> top > docs > PMC:3333881 > spans > 37468-37779 > annotations

PMC:3333881 / 37468-37779 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T28690 0-16 CD denotes Twenty-four-hour
T28691 17-31 JJ denotes post-infection
T28692 31-32 , denotes ,
T28693 33-38 JJ denotes total
T28694 39-42 NNP denotes RNA
T28695 43-46 VBD denotes was
T28696 47-55 VBN denotes analysed
T28697 56-59 IN denotes for
T28698 60-66 JJ denotes MIP-1α
T28699 67-77 NN denotes expression
T28700 78-80 IN denotes by
T28701 81-90 JJ denotes real-time
T28702 91-94 NNP denotes PCR
T28703 94-95 . denotes .
T28704 96-97 -LRB- denotes (
T28705 97-98 NNP denotes G
T28706 99-102 CC denotes and
T28707 103-104 NNP denotes H
T28708 104-105 -RRB- denotes )
T28709 106-110 NNP denotes U937
T28710 111-116 NNS denotes cells
T28711 117-118 -LRB- denotes (
T28712 118-119 CD denotes 5
T28713 120-121 RB denotes ×
T28714 122-125 CD denotes 107
T28715 125-126 -RRB- denotes )
T28716 127-131 VBD denotes were
T28717 132-143 VBN denotes transfected
T28718 144-148 IN denotes with
T28719 149-154 NNP denotes siRNA
T28720 155-158 NNP denotes Tat
T28721 159-161 CC denotes or
T28722 162-167 NNP denotes siRNA
T28723 168-175 NN denotes control
T28724 176-177 -LRB- denotes (
T28725 177-178 CD denotes 2
T28726 179-183 NN denotes nmol
T28727 183-184 -RRB- denotes )
T28728 184-185 , denotes ,
T28729 186-188 CC denotes or
T28730 189-193 VBD denotes left
T28731 194-207 JJ denotes untransfected
T28732 207-208 : denotes ;
T28733 209-211 CD denotes 24
T28734 212-213 NN denotes h
T28735 214-219 RB denotes later
T28736 219-220 , denotes ,
T28737 221-226 NNS denotes cells
T28738 227-231 VBD denotes were
T28739 232-240 VBN denotes infected
T28740 241-245 IN denotes with
T28741 246-262 JJ denotes HXB2-pseudotyped
T28742 263-268 NN denotes NL4-3
T28743 268-269 . denotes .
T28744 269-277 NN denotes FLAG-Tat
T28745 277-278 . denotes .
T28746 278-279 NN denotes R
T28747 279-280 NN denotes −
T28748 280-281 NNP denotes E
T28749 281-282 CD denotes −
T28750 283-290 NNS denotes virions
T28751 290-291 , denotes ,
T28752 292-294 CC denotes or
T28753 295-299 VBD denotes left
T28754 300-310 JJ denotes uninfected
T28755 310-311 . denotes .
R22460 T28690 T28691 nummod Twenty-four-hour,post-infection
R22461 T28691 T28695 nsubj post-infection,was
R22462 T28692 T28691 punct ",",post-infection
R22463 T28693 T28694 amod total,RNA
R22464 T28694 T28691 appos RNA,post-infection
R22465 T28695 T28695 ROOT was,was
R22466 T28696 T28695 attr analysed,was
R22467 T28697 T28696 prep for,analysed
R22468 T28698 T28699 amod MIP-1α,expression
R22469 T28699 T28697 pobj expression,for
R22470 T28700 T28699 prep by,expression
R22471 T28701 T28702 amod real-time,PCR
R22472 T28702 T28700 pobj PCR,by
R22473 T28703 T28695 punct .,was
R22474 T28704 T28709 punct (,U937
R22475 T28705 T28709 nmod G,U937
R22476 T28706 T28705 cc and,G
R22477 T28707 T28705 conj H,G
R22478 T28708 T28709 punct ),U937
R22479 T28709 T28710 compound U937,cells
R22480 T28710 T28717 nsubjpass cells,transfected
R22481 T28711 T28710 punct (,cells
R22482 T28712 T28714 quantmod 5,107
R22483 T28713 T28714 quantmod ×,107
R22484 T28714 T28710 appos 107,cells
R22485 T28715 T28710 punct ),cells
R22486 T28716 T28717 auxpass were,transfected
R22487 T28717 T28739 ccomp transfected,infected
R22488 T28718 T28717 prep with,transfected
R22489 T28719 T28720 compound siRNA,Tat
R22490 T28720 T28718 pobj Tat,with
R22491 T28721 T28720 cc or,Tat
R22492 T28722 T28723 compound siRNA,control
R22493 T28723 T28720 conj control,Tat
R22494 T28724 T28726 punct (,nmol
R22495 T28725 T28726 nummod 2,nmol
R22496 T28726 T28723 appos nmol,control
R22497 T28727 T28726 punct ),nmol
R22498 T28728 T28723 punct ",",control
R22499 T28729 T28723 cc or,control
R22500 T28730 T28717 advcl left,transfected
R22501 T28731 T28730 oprd untransfected,left
R22502 T28732 T28739 punct ;,infected
R22503 T28733 T28734 nummod 24,h
R22504 T28734 T28735 npadvmod h,later
R22505 T28735 T28739 advmod later,infected
R22506 T28736 T28739 punct ",",infected
R22507 T28737 T28739 nsubjpass cells,infected
R22508 T28738 T28739 auxpass were,infected
R22509 T28739 T28739 ROOT infected,infected
R22510 T28740 T28739 prep with,infected
R22511 T28741 T28742 amod HXB2-pseudotyped,NL4-3
R22512 T28742 T28740 pobj NL4-3,with
R22513 T28743 T28739 punct .,infected
R22514 T28744 T28744 ROOT FLAG-Tat,FLAG-Tat
R22515 T28745 T28744 punct .,FLAG-Tat
R22516 T28746 T28750 nmod R,virions
R22517 T28747 T28750 nummod −,virions
R22518 T28748 T28749 compound E,−
R22519 T28749 T28750 nummod −,virions
R22520 T28750 T28753 nsubj virions,left
R22521 T28751 T28750 punct ",",virions
R22522 T28752 T28750 cc or,virions
R22523 T28753 T28753 ROOT left,left
R22524 T28754 T28753 oprd uninfected,left
R22525 T28755 T28753 punct .,left

GO-CC

Id Subject Object Predicate Lexical cue
T28839 111-116 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T28840 221-226 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T28844 283-290 http://purl.obolibrary.org/obo/GO_0019012 denotes virions

sentences

Id Subject Object Predicate Lexical cue
T28294 0-311 Sentence denotes Twenty-four-hour post-infection, total RNA was analysed for MIP-1α expression by real-time PCR. (G and H) U937 cells (5 × 107) were transfected with siRNA Tat or siRNA control (2 nmol), or left untransfected; 24 h later, cells were infected with HXB2-pseudotyped NL4-3.FLAG-Tat.R−E− virions, or left uninfected.
T220 0-311 Sentence denotes Twenty-four-hour post-infection, total RNA was analysed for MIP-1α expression by real-time PCR. (G and H) U937 cells (5 × 107) were transfected with siRNA Tat or siRNA control (2 nmol), or left untransfected; 24 h later, cells were infected with HXB2-pseudotyped NL4-3.FLAG-Tat.R−E− virions, or left uninfected.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T29005 60-66 Protein denotes MIP-1α
T29006 67-77 Gene_expression denotes expression true
T29007 149-158 Protein denotes siRNA Tat
T29008 269-277 Protein denotes FLAG-Tat
R22639 T29005 T29006 themeOf MIP-1α,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T29039 60-66 Protein denotes MIP-1α
T29040 67-77 Gene_expression denotes expression
T29041 149-167 Protein denotes siRNA Tat or siRNA
R22650 T29039 T29040 themeOf MIP-1α,expression

test2

Id Subject Object Predicate Lexical cue
T28255 60-66 Protein denotes MIP-1α
T28256 67-77 Gene_expression denotes expression
T28257 149-158 Protein denotes siRNA Tat
T28258 269-277 Protein denotes FLAG-Tat
R22128 T28255 T28256 themeOf MIP-1α,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T28283 60-66 Protein denotes MIP-1α
T28284 67-77 Gene_expression denotes expression true
T28285 149-158 Protein denotes siRNA Tat
T28286 269-277 Protein denotes FLAG-Tat
R22136 T28283 T28284 themeOf MIP-1α,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T28344 60-66 P10147 denotes MIP-1α
T28345 155-158 P04608 denotes Tat
T28346 155-158 P04610 denotes Tat
T28347 155-158 P04605 denotes Tat
T28348 155-158 Q8UMQ1 denotes Tat
T28349 274-277 P04608 denotes Tat
T28350 274-277 P04610 denotes Tat
T28351 274-277 Q8UMQ1 denotes Tat
T28352 274-277 P04605 denotes Tat