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PMC:3333881 / 34840-35098 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15777 0-2 IN denotes As
T15778 3-13 JJ denotes additional
T15779 14-22 NN denotes findings
T15780 22-23 -COMMA- denotes ,
T15781 24-29 NN denotes IκB-α
T15782 30-33 VB denotes was
T15783 34-62 JJ denotes chromatin-immunoprecipitated
T15784 63-65 IN denotes at
T15785 66-69 DT denotes the
T15786 70-75 NN denotes NF-κB
T15787 76-85 NN denotes enhancers
T15788 86-88 IN denotes in
T15789 89-96 NN denotes absence
T15790 97-99 IN denotes of
T15791 100-103 NN denotes Tat
T15792 103-104 -COMMA- denotes ,
T15793 105-108 CC denotes and
T15794 109-111 PRP denotes it
T15795 112-115 VB denotes was
T15796 116-129 RB denotes significantly
T15797 130-137 VB denotes removed
T15798 138-140 IN denotes in
T15799 141-149 NN denotes presence
T15800 150-152 IN denotes of
T15801 153-156 NN denotes Tat
T15802 156-157 -COMMA- denotes ,
T15803 158-160 CC denotes or
T15804 161-170 VB denotes following
T15805 171-176 JJ denotes IκB-α
T15806 177-180 NN denotes RNA
T15807 181-193 NN denotes interference
T15808 194-195 -LRB- denotes (
T15809 195-201 NN denotes Figure
T15810 202-204 NN denotes 5J
T15811 204-205 -RRB- denotes )
T15812 205-206 -COMMA- denotes ,
T15813 207-217 VB denotes indicating
T15814 218-222 IN denotes that
T15815 223-226 NN denotes Tat
T15816 227-236 VB denotes displaced
T15817 237-242 JJ denotes IκB-α
T15818 243-247 IN denotes from
T15819 248-257 NN denotes promoters
R12736 T15779 T15777 arg2Of findings,As
R12737 T15779 T15778 arg1Of findings,additional
R12738 T15781 T15782 arg1Of IκB-α,was
R12739 T15781 T15783 arg1Of IκB-α,chromatin-immunoprecipitated
R12740 T15782 T15784 arg1Of was,at
R12741 T15782 T15788 arg1Of was,in
R12742 T15782 T15793 arg1Of was,and
R12743 T15783 T15782 arg2Of chromatin-immunoprecipitated,was
R12744 T15787 T15784 arg2Of enhancers,at
R12745 T15787 T15785 arg1Of enhancers,the
R12746 T15787 T15786 arg1Of enhancers,NF-κB
R12747 T15788 T15790 arg1Of in,of
R12748 T15789 T15788 arg2Of absence,in
R12749 T15791 T15788 arg3Of Tat,in
R12750 T15793 T15777 arg1Of and,As
R12751 T15793 T15780 arg1Of and,","
R12752 T15793 T15792 arg1Of and,","
R12753 T15794 T15795 arg1Of it,was
R12754 T15794 T15797 arg2Of it,removed
R12755 T15797 T15793 arg2Of removed,and
R12756 T15797 T15795 arg2Of removed,was
R12757 T15797 T15796 arg1Of removed,significantly
R12758 T15797 T15798 arg1Of removed,in
R12759 T15797 T15812 arg1Of removed,","
R12760 T15797 T15813 modOf removed,indicating
R12761 T15798 T15800 arg1Of in,of
R12762 T15799 T15798 arg2Of presence,in
R12763 T15801 T15803 arg1Of Tat,or
R12764 T15803 T15798 arg3Of or,in
R12765 T15803 T15802 arg1Of or,","
R12766 T15804 T15803 arg2Of following,or
R12767 T15807 T15804 arg2Of interference,following
R12768 T15807 T15805 arg1Of interference,IκB-α
R12769 T15807 T15806 arg1Of interference,RNA
R12770 T15807 T15808 arg1Of interference,(
R12771 T15810 T15808 arg2Of 5J,(
R12772 T15810 T15809 arg1Of 5J,Figure
R12773 T15811 T15808 arg3Of ),(
R12774 T15815 T15816 arg1Of Tat,displaced
R12775 T15815 T15817 arg1Of Tat,IκB-α
R12776 T15816 T15813 arg2Of displaced,indicating
R12777 T15816 T15814 arg1Of displaced,that
R12778 T15817 T15816 arg2Of IκB-α,displaced
R12779 T15817 T15818 arg1Of IκB-α,from
R12780 T15819 T15818 arg2Of promoters,from

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16541 227-236 VBD denotes displaced
T16568 0-2 IN denotes As
T16569 3-13 JJ denotes additional
T16570 14-22 NNS denotes findings
T16571 22-23 , denotes ,
T16572 24-29 NNP denotes IκB-α
T16573 30-33 VBD denotes was
T16574 34-62 VBN denotes chromatin-immunoprecipitated
T16575 63-65 IN denotes at
T16576 66-69 DT denotes the
T16577 70-75 JJ denotes NF-κB
T16578 76-85 NNS denotes enhancers
T16579 86-88 IN denotes in
T16580 89-96 NN denotes absence
T16581 97-99 IN denotes of
T16582 100-103 NNP denotes Tat
T16583 103-104 , denotes ,
T16584 105-108 CC denotes and
T16585 109-111 PRP denotes it
T16586 112-115 VBD denotes was
T16587 116-129 RB denotes significantly
T16588 130-137 VBN denotes removed
T16589 138-140 IN denotes in
T16590 141-149 NN denotes presence
T16591 150-152 IN denotes of
T16592 153-156 NNP denotes Tat
T16593 156-157 , denotes ,
T16594 158-160 CC denotes or
T16595 161-170 VBG denotes following
T16596 171-176 NNP denotes IκB-α
T16597 177-180 NNP denotes RNA
T16598 181-193 NN denotes interference
T16599 194-195 -LRB- denotes (
T16600 195-201 NN denotes Figure
T16601 202-204 CD denotes 5J
T16602 204-205 -RRB- denotes )
T16603 205-206 , denotes ,
T16604 207-217 VBG denotes indicating
T16605 218-222 IN denotes that
T16606 223-226 NNP denotes Tat
T16607 237-242 NNP denotes IκB-α
T16608 243-247 IN denotes from
T16609 248-257 NNS denotes promoters
T16610 257-258 . denotes .
R13331 T16541 T16604 ccomp displaced,indicating
R13358 T16568 T16574 prep As,chromatin-immunoprecipitated
R13359 T16569 T16570 amod additional,findings
R13360 T16570 T16568 pobj findings,As
R13361 T16571 T16574 punct ",",chromatin-immunoprecipitated
R13362 T16572 T16574 nsubjpass IκB-α,chromatin-immunoprecipitated
R13363 T16573 T16574 auxpass was,chromatin-immunoprecipitated
R13364 T16574 T16574 ROOT chromatin-immunoprecipitated,chromatin-immunoprecipitated
R13365 T16575 T16574 prep at,chromatin-immunoprecipitated
R13366 T16576 T16578 det the,enhancers
R13367 T16577 T16578 amod NF-κB,enhancers
R13368 T16578 T16575 pobj enhancers,at
R13369 T16579 T16578 prep in,enhancers
R13370 T16580 T16579 pobj absence,in
R13371 T16581 T16580 prep of,absence
R13372 T16582 T16581 pobj Tat,of
R13373 T16583 T16574 punct ",",chromatin-immunoprecipitated
R13374 T16584 T16574 cc and,chromatin-immunoprecipitated
R13375 T16585 T16588 nsubjpass it,removed
R13376 T16586 T16588 auxpass was,removed
R13377 T16587 T16588 advmod significantly,removed
R13378 T16588 T16574 conj removed,chromatin-immunoprecipitated
R13379 T16589 T16588 prep in,removed
R13380 T16590 T16589 pobj presence,in
R13381 T16591 T16590 prep of,presence
R13382 T16592 T16591 pobj Tat,of
R13383 T16593 T16588 punct ",",removed
R13384 T16594 T16588 cc or,removed
R13385 T16595 T16588 conj following,removed
R13386 T16596 T16598 compound IκB-α,interference
R13387 T16597 T16598 compound RNA,interference
R13388 T16598 T16595 dobj interference,following
R13389 T16599 T16600 punct (,Figure
R13390 T16600 T16598 appos Figure,interference
R13391 T16601 T16600 nummod 5J,Figure
R13392 T16602 T16600 punct ),Figure
R13393 T16603 T16595 punct ",",following
R13394 T16604 T16595 dep indicating,following
R13395 T16605 T16541 mark that,displaced
R13396 T16606 T16541 nsubj Tat,displaced
R13397 T16607 T16541 dobj IκB-α,displaced
R13398 T16608 T16541 prep from,displaced
R13399 T16609 T16608 pobj promoters,from
R13400 T16610 T16588 punct .,removed

GO-BP

Id Subject Object Predicate Lexical cue
T16620 177-193 http://purl.obolibrary.org/obo/GO_0016246 denotes RNA interference

GO-CC

Id Subject Object Predicate Lexical cue
T16629 34-43 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T15236 0-258 Sentence denotes As additional findings, IκB-α was chromatin-immunoprecipitated at the NF-κB enhancers in absence of Tat, and it was significantly removed in presence of Tat, or following IκB-α RNA interference (Figure 5J), indicating that Tat displaced IκB-α from promoters.
T208 0-258 Sentence denotes As additional findings, IκB-α was chromatin-immunoprecipitated at the NF-κB enhancers in absence of Tat, and it was significantly removed in presence of Tat, or following IκB-α RNA interference (Figure 5J), indicating that Tat displaced IκB-α from promoters.

events-check-again

Id Subject Object Predicate Lexical cue
T17390 24-29 Protein denotes IκB-α
T17391 34-62 Binding denotes chromatin-immunoprecipitated
T17392 100-103 Protein denotes Tat
T17393 130-137 Negative_regulation denotes removed
T17394 130-137 Negative_regulation denotes removed
T17395 153-156 Protein denotes Tat
T17396 171-176 Protein denotes IκB-α
T17397 181-193 Negative_regulation denotes interference
T17398 223-226 Protein denotes Tat
T17399 227-236 Negative_regulation denotes displaced
T17400 237-242 Protein denotes IκB-α
T17401 243-247 Binding denotes from
R13995 T17390 T17391 themeOf IκB-α,chromatin-immunoprecipitated
R13996 T17391 T17393 themeOf chromatin-immunoprecipitated,removed
R13997 T17391 T17394 themeOf chromatin-immunoprecipitated,removed
R13998 T17395 T17393 causeOf Tat,removed
R13999 T17396 T17397 themeOf IκB-α,interference
R14000 T17397 T17394 causeOf interference,removed
R14001 T17398 T17399 causeOf Tat,displaced
R14002 T17400 T17401 themeOf IκB-α,from
R14003 T17401 T17399 themeOf from,displaced

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T17535 24-29 Protein denotes IκB-α
T17536 70-85 Protein denotes NF-κB enhancers
T17537 100-103 Protein denotes Tat
T17538 153-156 Protein denotes Tat
T17539 171-180 Protein denotes IκB-α RNA
T17540 223-226 Protein denotes Tat
T17541 237-242 Protein denotes IκB-α
T17542 14-22 Binding denotes findings
T17543 14-22 Binding denotes findings
T17544 89-96 Transcription denotes absence
R14073 T17535 T17542 themeOf IκB-α,findings
R14074 T17535 T17543 themeOf IκB-α,findings
R14075 T17536 T17543 themeOf NF-κB enhancers,findings
R14076 T17537 T17544 themeOf Tat,absence

test2

Id Subject Object Predicate Lexical cue
T15065 24-29 Protein denotes IκB-α
T15066 34-44 Positive_regulation denotes chromatin-
T15067 44-62 Binding denotes immunoprecipitated
T15068 89-96 Negative_regulation denotes absence
T15069 100-103 Protein denotes Tat
T15070 153-156 Protein denotes Tat
T15071 161-170 Positive_regulation denotes following
T15072 171-176 Protein denotes IκB-α
T15073 181-193 Negative_regulation denotes interference
T15074 223-226 Protein denotes Tat
T15075 227-236 Negative_regulation denotes displaced
T15076 237-242 Protein denotes IκB-α
R12064 T15069 T15068 themeOf Tat,absence
R12065 T15072 T15073 themeOf IκB-α,interference
R12066 T15074 T15075 causeOf Tat,displaced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T15207 24-29 Protein denotes IκB-α
T15208 34-62 Binding denotes chromatin-immunoprecipitated
T15209 100-103 Protein denotes Tat
T15210 130-137 Negative_regulation denotes removed
T15211 130-137 Negative_regulation denotes removed
T15212 153-156 Protein denotes Tat
T15213 171-176 Protein denotes IκB-α
T15214 181-193 Negative_regulation denotes interference
T15215 223-226 Protein denotes Tat
T15216 227-236 Negative_regulation denotes displaced
T15217 237-242 Protein denotes IκB-α
T15218 243-247 Binding denotes from
R12178 T15207 T15208 themeOf IκB-α,chromatin-immunoprecipitated
R12179 T15208 T15210 themeOf chromatin-immunoprecipitated,removed
R12180 T15208 T15211 themeOf chromatin-immunoprecipitated,removed
R12181 T15212 T15210 causeOf Tat,removed
R12182 T15213 T15214 themeOf IκB-α,interference
R12183 T15214 T15211 causeOf interference,removed
R12184 T15215 T15216 causeOf Tat,displaced
R12185 T15217 T15218 themeOf IκB-α,from
R12186 T15218 T15216 themeOf from,displaced

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15968 100-103 P04610 denotes Tat
T15969 100-103 P04608 denotes Tat
T15970 100-103 P04605 denotes Tat
T15971 100-103 Q8UMQ1 denotes Tat
T15972 153-156 P04610 denotes Tat
T15973 153-156 P04605 denotes Tat
T15974 153-156 P04608 denotes Tat
T15975 153-156 Q8UMQ1 denotes Tat
T15976 223-226 P04605 denotes Tat
T15977 223-226 P04608 denotes Tat
T15978 223-226 P04610 denotes Tat
T15979 223-226 Q8UMQ1 denotes Tat