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PMC:3333881 / 31809-32150 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27340 0-16 CD denotes Twenty-four-hour
T27341 17-34 JJ denotes post-transfection
T27342 34-35 -COMMA- denotes ,
T27343 36-41 JJ denotes total
T27344 42-45 NN denotes RNA
T27345 46-49 VB denotes was
T27346 50-59 VB denotes extracted
T27347 60-63 CC denotes and
T27348 64-72 VB denotes analysed
T27349 73-75 IN denotes by
T27350 76-85 JJ denotes real-time
T27351 86-89 NN denotes PCR
T27352 90-92 TO denotes to
T27353 93-101 VB denotes evaluate
T27354 102-105 DT denotes the
T27355 106-116 NN denotes expression
T27356 117-119 IN denotes of
T27357 120-126 NN denotes MIP-1α
T27358 127-128 -LRB- denotes (
T27359 128-129 NN denotes A
T27360 129-130 -RRB- denotes )
T27361 130-131 -COMMA- denotes ,
T27362 132-136 NN denotes CSF3
T27363 137-138 -LRB- denotes (
T27364 138-139 NN denotes B
T27365 139-140 -RRB- denotes )
T27366 140-141 -COMMA- denotes ,
T27367 142-145 NN denotes LTA
T27368 146-147 -LRB- denotes (
T27369 147-148 NN denotes C
T27370 148-149 -RRB- denotes )
T27371 149-150 -COMMA- denotes ,
T27372 151-157 NN denotes NFKBIA
T27373 158-159 -LRB- denotes (
T27374 159-160 NN denotes D
T27375 160-161 -RRB- denotes )
T27376 161-162 -COMMA- denotes ,
T27377 163-167 NN denotes TLR2
T27378 168-169 -LRB- denotes (
T27379 169-170 NN denotes E
T27380 170-171 -RRB- denotes )
T27381 171-172 -COMMA- denotes ,
T27382 173-178 NN denotes GAPDH
T27383 179-180 -LRB- denotes (
T27384 180-181 NN denotes F
T27385 181-182 -RRB- denotes )
T27386 182-183 -COMMA- denotes ,
T27387 184-188 NN denotes ACTB
T27388 189-190 -LRB- denotes (
T27389 190-191 NN denotes G
T27390 191-192 -RRB- denotes )
T27391 193-199 NN denotes genes.
T27392 200-201 -LRB- denotes (
T27393 201-202 NN denotes H
T27394 202-203 -RRB- denotes )
T27395 204-208 NN denotes HeLa
T27396 209-214 NN denotes cells
T27397 215-216 -LRB- denotes (
T27398 216-223 CD denotes 5 × 106
T27399 223-224 -RRB- denotes )
T27400 225-229 VB denotes were
T27401 230-241 VB denotes transfected
T27402 242-246 IN denotes with
T27403 247-258 NN denotes p3xFLAG-Tat
T27404 258-259 -COMMA- denotes ,
T27405 260-262 CC denotes or
T27406 263-268 JJ denotes empty
T27407 269-275 NN denotes vector
T27408 276-277 -LRB- denotes (
T27409 277-282 NN denotes 10 µg
T27410 282-283 -RRB- denotes )
T27411 284-287 CC denotes and
T27412 288-292 NN denotes 48 h
T27413 293-298 JJ denotes later
T27414 299-303 NN denotes ChIP
T27415 304-307 VB denotes was
T27416 308-317 VB denotes performed
T27417 318-322 IN denotes with
T27418 323-331 JJ denotes anti-p65
T27419 332-340 NN denotes antibody
R21434 T27341 T27342 arg1Of post-transfection,","
R21435 T27343 T27342 arg2Of total,","
R21436 T27344 T27340 arg1Of RNA,Twenty-four-hour
R21437 T27344 T27341 arg1Of RNA,post-transfection
R21438 T27344 T27343 arg1Of RNA,total
R21439 T27344 T27345 arg1Of RNA,was
R21440 T27344 T27346 arg2Of RNA,extracted
R21441 T27344 T27348 arg2Of RNA,analysed
R21442 T27346 T27347 arg1Of extracted,and
R21443 T27347 T27345 arg2Of and,was
R21444 T27347 T27352 modOf and,to
R21445 T27348 T27347 arg2Of analysed,and
R21446 T27351 T27346 arg1Of PCR,extracted
R21447 T27351 T27348 arg1Of PCR,analysed
R21448 T27351 T27349 arg2Of PCR,by
R21449 T27351 T27350 arg1Of PCR,real-time
R21450 T27353 T27352 arg1Of evaluate,to
R21451 T27355 T27354 arg1Of expression,the
R21452 T27355 T27356 arg1Of expression,of
R21453 T27355 T27415 arg1Of expression,was
R21454 T27355 T27416 arg2Of expression,performed
R21455 T27357 T27358 arg1Of MIP-1α,(
R21456 T27357 T27361 arg1Of MIP-1α,","
R21457 T27359 T27358 arg2Of A,(
R21458 T27360 T27358 arg3Of ),(
R21459 T27361 T27366 arg1Of ",",","
R21460 T27362 T27361 arg2Of CSF3,","
R21461 T27362 T27363 arg1Of CSF3,(
R21462 T27364 T27363 arg2Of B,(
R21463 T27365 T27363 arg3Of ),(
R21464 T27366 T27371 arg1Of ",",","
R21465 T27367 T27366 arg2Of LTA,","
R21466 T27367 T27368 arg1Of LTA,(
R21467 T27369 T27368 arg2Of C,(
R21468 T27370 T27368 arg3Of ),(
R21469 T27371 T27356 arg2Of ",",of
R21470 T27372 T27373 arg1Of NFKBIA,(
R21471 T27372 T27376 arg1Of NFKBIA,","
R21472 T27374 T27373 arg2Of D,(
R21473 T27375 T27373 arg3Of ),(
R21474 T27376 T27381 arg1Of ",",","
R21475 T27377 T27376 arg2Of TLR2,","
R21476 T27377 T27378 arg1Of TLR2,(
R21477 T27379 T27378 arg2Of E,(
R21478 T27380 T27378 arg3Of ),(
R21479 T27381 T27386 arg1Of ",",","
R21480 T27382 T27381 arg2Of GAPDH,","
R21481 T27382 T27383 arg1Of GAPDH,(
R21482 T27384 T27383 arg2Of F,(
R21483 T27385 T27383 arg3Of ),(
R21484 T27386 T27371 arg2Of ",",","
R21485 T27386 T27400 modOf ",",were
R21486 T27387 T27386 arg2Of ACTB,","
R21487 T27387 T27388 arg1Of ACTB,(
R21488 T27389 T27388 arg2Of G,(
R21489 T27390 T27388 arg3Of ),(
R21490 T27393 T27392 arg2Of H,(
R21491 T27394 T27392 arg3Of ),(
R21492 T27396 T27391 arg1Of cells,genes.
R21493 T27396 T27392 arg1Of cells,(
R21494 T27396 T27395 arg1Of cells,HeLa
R21495 T27396 T27397 arg1Of cells,(
R21496 T27396 T27400 arg1Of cells,were
R21497 T27396 T27401 arg2Of cells,transfected
R21498 T27398 T27397 arg2Of 5 × 106,(
R21499 T27399 T27397 arg3Of ),(
R21500 T27401 T27400 arg2Of transfected,were
R21501 T27401 T27402 arg1Of transfected,with
R21502 T27403 T27405 arg1Of p3xFLAG-Tat,or
R21503 T27405 T27402 arg2Of or,with
R21504 T27405 T27404 arg1Of or,","
R21505 T27407 T27406 arg1Of vector,empty
R21506 T27407 T27408 arg1Of vector,(
R21507 T27407 T27411 arg1Of vector,and
R21508 T27409 T27408 arg2Of 10 µg,(
R21509 T27410 T27408 arg3Of ),(
R21510 T27411 T27405 arg2Of and,or
R21511 T27414 T27411 arg2Of ChIP,and
R21512 T27414 T27412 arg1Of ChIP,48 h
R21513 T27414 T27413 arg1Of ChIP,later
R21514 T27416 T27353 arg2Of performed,evaluate
R21515 T27416 T27415 arg2Of performed,was
R21516 T27416 T27417 arg1Of performed,with
R21517 T27419 T27417 arg2Of antibody,with
R21518 T27419 T27418 arg1Of antibody,anti-p65

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T27713 0-16 CD denotes Twenty-four-hour
T27714 17-34 JJ denotes post-transfection
T27715 34-35 , denotes ,
T27716 36-41 JJ denotes total
T27717 42-45 NNP denotes RNA
T27718 46-49 VBD denotes was
T27719 50-59 VBN denotes extracted
T27720 60-63 CC denotes and
T27721 64-72 VBN denotes analysed
T27722 73-75 IN denotes by
T27723 76-85 JJ denotes real-time
T27724 86-89 NNP denotes PCR
T27725 90-92 TO denotes to
T27726 93-101 VB denotes evaluate
T27727 102-105 DT denotes the
T27728 106-116 NN denotes expression
T27729 117-119 IN denotes of
T27730 120-126 NNP denotes MIP-1α
T27731 127-128 -LRB- denotes (
T27732 128-129 NNP denotes A
T27733 129-130 -RRB- denotes )
T27734 130-131 , denotes ,
T27735 132-136 NNP denotes CSF3
T27736 137-138 -LRB- denotes (
T27737 138-139 NNP denotes B
T27738 139-140 -RRB- denotes )
T27739 140-141 , denotes ,
T27740 142-145 NNP denotes LTA
T27741 146-147 -LRB- denotes (
T27742 147-148 NNP denotes C
T27743 148-149 -RRB- denotes )
T27744 149-150 , denotes ,
T27745 151-157 NNP denotes NFKBIA
T27746 158-159 -LRB- denotes (
T27747 159-160 NNP denotes D
T27748 160-161 -RRB- denotes )
T27749 161-162 , denotes ,
T27750 163-167 NNP denotes TLR2
T27751 168-169 -LRB- denotes (
T27752 169-170 NNP denotes E
T27753 170-171 -RRB- denotes )
T27754 171-172 , denotes ,
T27755 173-178 NNP denotes GAPDH
T27756 179-180 -LRB- denotes (
T27757 180-181 NN denotes F
T27758 181-182 -RRB- denotes )
T27759 182-183 , denotes ,
T27760 184-188 NNP denotes ACTB
T27761 189-190 -LRB- denotes (
T27762 190-191 NNP denotes G
T27763 191-192 -RRB- denotes )
T27764 193-198 NNS denotes genes
T27765 198-199 . denotes .
T27766 200-201 -LRB- denotes (
T27767 201-202 NNP denotes H
T27768 202-203 -RRB- denotes )
T27769 204-208 NNP denotes HeLa
T27770 209-214 NNS denotes cells
T27771 215-216 -LRB- denotes (
T27772 216-217 CD denotes 5
T27773 218-219 CD denotes ×
T27774 220-223 CD denotes 106
T27775 223-224 -RRB- denotes )
T27776 225-229 VBD denotes were
T27777 230-241 VBN denotes transfected
T27778 242-246 IN denotes with
T27779 247-258 NN denotes p3xFLAG-Tat
T27780 258-259 , denotes ,
T27781 260-262 CC denotes or
T27782 263-268 JJ denotes empty
T27783 269-275 NN denotes vector
T27784 276-277 -LRB- denotes (
T27785 277-279 CD denotes 10
T27786 280-282 NN denotes µg
T27787 282-283 -RRB- denotes )
T27788 284-287 CC denotes and
T27789 288-290 CD denotes 48
T27790 291-292 NN denotes h
T27791 293-298 RB denotes later
T27792 299-303 NNP denotes ChIP
T27793 304-307 VBD denotes was
T27794 308-317 VBN denotes performed
T27795 318-322 IN denotes with
T27796 323-331 JJ denotes anti-p65
T27797 332-340 NN denotes antibody
T27798 340-341 . denotes .
R21767 T27724 T27722 pobj PCR,by
R21768 T27725 T27726 aux to,evaluate
R21769 T27726 T27721 xcomp evaluate,analysed
R21770 T27727 T27728 det the,expression
R21771 T27728 T27726 dobj expression,evaluate
R21806 T27763 T27760 punct ),ACTB
R21807 T27764 T27729 pobj genes,of
R21808 T27765 T27719 punct .,extracted
R21809 T27766 T27777 punct (,transfected
R21810 T27767 T27770 compound H,cells
R21811 T27768 T27769 punct ),HeLa
R21812 T27769 T27770 compound HeLa,cells
R21813 T27770 T27777 nsubjpass cells,transfected
R21814 T27771 T27770 punct (,cells
R21815 T27772 T27774 nummod 5,106
R21780 T27737 T27735 appos B,CSF3
R21781 T27738 T27735 punct ),CSF3
R21782 T27739 T27735 punct ",",CSF3
R21783 T27740 T27735 conj LTA,CSF3
R21784 T27741 T27742 punct (,C
R21756 T27713 T27714 nummod Twenty-four-hour,post-transfection
R21757 T27714 T27714 ROOT post-transfection,post-transfection
R21758 T27715 T27714 punct ",",post-transfection
R21759 T27716 T27717 amod total,RNA
R21760 T27717 T27719 nsubjpass RNA,extracted
R21761 T27718 T27719 auxpass was,extracted
R21762 T27719 T27714 conj extracted,post-transfection
R21763 T27720 T27719 cc and,extracted
R21764 T27721 T27719 conj analysed,extracted
R21765 T27722 T27721 agent by,analysed
R21766 T27723 T27724 amod real-time,PCR
R21772 T27729 T27728 prep of,expression
R21773 T27730 T27729 pobj MIP-1α,of
R21774 T27731 T27730 punct (,MIP-1α
R21775 T27732 T27730 appos A,MIP-1α
R21776 T27733 T27730 punct ),MIP-1α
R21777 T27734 T27730 punct ",",MIP-1α
R21778 T27735 T27730 conj CSF3,MIP-1α
R21779 T27736 T27737 punct (,B
R21785 T27742 T27740 parataxis C,LTA
R21786 T27743 T27742 punct ),C
R21787 T27744 T27740 punct ",",LTA
R21788 T27745 T27740 conj NFKBIA,LTA
R21789 T27746 T27747 punct (,D
R21790 T27747 T27745 appos D,NFKBIA
R21791 T27748 T27745 punct ),NFKBIA
R21792 T27749 T27745 punct ",",NFKBIA
R21793 T27750 T27745 conj TLR2,NFKBIA
R21794 T27751 T27752 punct (,E
R21795 T27752 T27750 appos E,TLR2
R21796 T27753 T27750 punct ),TLR2
R21797 T27754 T27750 punct ",",TLR2
R21798 T27755 T27750 conj GAPDH,TLR2
R21799 T27756 T27757 punct (,F
R21800 T27757 T27755 appos F,GAPDH
R21801 T27758 T27755 punct ),GAPDH
R21802 T27759 T27755 punct ",",GAPDH
R21803 T27760 T27755 conj ACTB,GAPDH
R21804 T27761 T27762 punct (,G
R21805 T27762 T27760 appos G,ACTB
R21816 T27773 T27774 nummod ×,106
R21817 T27774 T27770 appos 106,cells
R21818 T27775 T27770 punct ),cells
R21819 T27776 T27777 auxpass were,transfected
R21820 T27777 T27777 ROOT transfected,transfected
R21821 T27778 T27777 prep with,transfected
R21822 T27779 T27778 pobj p3xFLAG-Tat,with
R21823 T27780 T27779 punct ",",p3xFLAG-Tat
R21824 T27781 T27779 cc or,p3xFLAG-Tat
R21825 T27782 T27783 amod empty,vector
R21826 T27783 T27779 conj vector,p3xFLAG-Tat
R21827 T27784 T27786 punct (,µg
R21828 T27785 T27786 nummod 10,µg
R21829 T27786 T27779 appos µg,p3xFLAG-Tat
R21830 T27787 T27786 punct ),µg
R21831 T27788 T27779 cc and,p3xFLAG-Tat
R21832 T27789 T27790 nummod 48,h
R21833 T27790 T27791 npadvmod h,later
R21834 T27791 T27794 advmod later,performed
R21835 T27792 T27794 nsubjpass ChIP,performed
R21836 T27793 T27794 auxpass was,performed
R21837 T27794 T27777 conj performed,transfected
R21838 T27795 T27794 prep with,performed
R21839 T27796 T27797 amod anti-p65,antibody
R21840 T27797 T27795 pobj antibody,with
R21841 T27798 T27794 punct .,performed

GO-MF

Id Subject Object Predicate Lexical cue
T27982 332-340 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T27972 209-214 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27975 332-340 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T27978 332-340 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T27260 0-341 Sentence denotes Twenty-four-hour post-transfection, total RNA was extracted and analysed by real-time PCR to evaluate the expression of MIP-1α (A), CSF3 (B), LTA (C), NFKBIA (D), TLR2 (E), GAPDH (F), ACTB (G) genes. (H) HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, or empty vector (10 µg) and 48 h later ChIP was performed with anti-p65 antibody.
T192 0-341 Sentence denotes Twenty-four-hour post-transfection, total RNA was extracted and analysed by real-time PCR to evaluate the expression of MIP-1α (A), CSF3 (B), LTA (C), NFKBIA (D), TLR2 (E), GAPDH (F), ACTB (G) genes. (H) HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, or empty vector (10 µg) and 48 h later ChIP was performed with anti-p65 antibody.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T28160 106-116 Gene_expression denotes expression true
T28161 106-116 Gene_expression denotes expression true
T28162 106-116 Gene_expression denotes expression true
T28163 106-116 Gene_expression denotes expression true
T28164 106-116 Gene_expression denotes expression true
T28165 106-116 Gene_expression denotes expression true
T28166 106-116 Gene_expression denotes expression true
T28167 120-126 Protein denotes MIP-1α
T28168 132-136 Protein denotes CSF3
T28169 142-145 Protein denotes LTA
T28170 151-157 Protein denotes NFKBIA
T28171 163-167 Protein denotes TLR2
T28172 173-178 Protein denotes GAPDH
T28173 184-188 Protein denotes ACTB
T28174 255-258 Protein denotes Tat
R22096 T28167 T28162 themeOf MIP-1α,expression
R22097 T28168 T28161 themeOf CSF3,expression
R22098 T28169 T28160 themeOf LTA,expression
R22099 T28170 T28163 themeOf NFKBIA,expression
R22100 T28171 T28165 themeOf TLR2,expression
R22101 T28172 T28164 themeOf GAPDH,expression
R22102 T28173 T28166 themeOf ACTB,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T28195 120-126 Protein denotes MIP-1α
T28196 173-178 Protein denotes GAPDH
T28197 106-116 Gene_expression denotes expression
T28198 106-116 Gene_expression denotes expression
T28199 93-101 Positive_regulation denotes evaluate
T28200 93-101 Positive_regulation denotes evaluate
T28201 247-254 Protein denotes p3xFLAG
T28202 255-258 Protein denotes Tat
T28203 323-340 Protein denotes anti-p65 antibody
R22108 T28195 T28197 themeOf MIP-1α,expression
R22109 T28196 T28198 themeOf GAPDH,expression
R22110 T28197 T28199 themeOf expression,evaluate
R22111 T28198 T28200 themeOf expression,evaluate

test2

Id Subject Object Predicate Lexical cue
T27210 106-116 Gene_expression denotes expression
T27211 120-126 Protein denotes MIP-1α
T27212 132-136 Protein denotes CSF3
T27213 142-145 Protein denotes LTA
T27214 151-157 Protein denotes NFKBIA
T27215 163-167 Protein denotes TLR2
T27216 173-178 Protein denotes GAPDH
T27217 184-188 Protein denotes ACTB
T27218 255-258 Protein denotes Tat
R21341 T27217 T27210 themeOf ACTB,expression
R21335 T27211 T27210 themeOf MIP-1α,expression
R21336 T27212 T27210 themeOf CSF3,expression
R21337 T27213 T27210 themeOf LTA,expression
R21338 T27214 T27210 themeOf NFKBIA,expression
R21339 T27215 T27210 themeOf TLR2,expression
R21340 T27216 T27210 themeOf GAPDH,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T27249 151-157 Protein denotes NFKBIA
T27250 163-167 Protein denotes TLR2
T27251 173-178 Protein denotes GAPDH
T27252 184-188 Protein denotes ACTB
T27253 255-258 Protein denotes Tat
T27239 106-116 Gene_expression denotes expression true
T27240 106-116 Gene_expression denotes expression true
T27241 106-116 Gene_expression denotes expression true
T27242 106-116 Gene_expression denotes expression true
T27243 106-116 Gene_expression denotes expression true
T27244 106-116 Gene_expression denotes expression true
T27245 106-116 Gene_expression denotes expression true
T27246 120-126 Protein denotes MIP-1α
T27247 132-136 Protein denotes CSF3
T27248 142-145 Protein denotes LTA
R21351 T27246 T27241 themeOf MIP-1α,expression
R21352 T27247 T27240 themeOf CSF3,expression
R21353 T27248 T27239 themeOf LTA,expression
R21354 T27249 T27242 themeOf NFKBIA,expression
R21355 T27250 T27244 themeOf TLR2,expression
R21356 T27251 T27243 themeOf GAPDH,expression
R21357 T27252 T27245 themeOf ACTB,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T27600 142-145 P01374 denotes LTA
T27601 151-157 P25963 denotes NFKBIA
T27602 163-167 O60603 denotes TLR2
T27603 173-178 P04406 denotes GAPDH
T27604 184-188 P60709 denotes ACTB
T27605 255-258 P04610 denotes Tat
T27606 255-258 P04605 denotes Tat
T27607 255-258 P04608 denotes Tat
T27608 255-258 Q8UMQ1 denotes Tat
T27609 328-331 Q04206 denotes p65
T27610 328-331 P21579 denotes p65
T27598 120-126 P10147 denotes MIP-1α
T27599 132-136 P09919 denotes CSF3