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PMC:3333881 / 31384-32977 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27266 10-13 NN denotes Tat
T27267 14-23 VB denotes activates
T27268 24-27 DT denotes the
T27269 28-41 JJ denotes p65-dependent
T27270 42-52 NN denotes expression
T27271 53-55 IN denotes of
T27272 56-72 JJ denotes NF-κB-responsive
T27273 73-78 NN denotes genes
T27274 79-81 IN denotes by
T27275 82-91 VB denotes occupying
T27276 92-95 DT denotes the
T27277 96-101 NN denotes NF-κB
T27278 102-111 NN denotes enhancers
T27279 112-115 CC denotes and
T27280 116-125 VB denotes promoting
T27281 126-129 DT denotes the
T27282 130-133 NN denotes p65
T27283 134-145 NN denotes recruitment
T27284 146-150 IN denotes with
T27285 151-156 JJ denotes IκB-α
T27286 157-169 NN denotes displacement
T27287 171-175 NN denotes HeLa
T27288 176-181 NN denotes cells
T27289 182-183 -LRB- denotes (
T27290 183-190 CD denotes 5 × 106
T27291 190-191 -RRB- denotes )
T27292 192-196 VB denotes were
T27293 197-208 VB denotes transfected
T27294 209-213 IN denotes with
T27295 214-225 NN denotes p3xFLAG-Tat
T27296 225-226 -COMMA- denotes ,
T27297 227-238 NN denotes p3xFLAG-Tat
T27298 239-240 NN denotes C
T27299 240-241 -LRB- denotes (
T27300 241-249 CD denotes 22,25,27
T27301 249-250 -RRB- denotes )
T27302 250-251 -COMMA- denotes ,
T27303 252-263 NN denotes p3xFLAG-Tat
T27304 264-265 NN denotes R
T27305 265-266 -LRB- denotes (
T27306 266-271 CD denotes 49–57
T27307 271-272 -RRB- denotes )
T27308 273-275 CC denotes or
T27309 276-281 JJ denotes empty
T27310 282-288 NN denotes vector
T27311 289-290 -LRB- denotes (
T27312 290-295 NN denotes 10 µg
T27313 295-296 -RRB- denotes )
T27314 296-297 -COLON- denotes ;
T27315 298-301 IN denotes for
T27316 302-305 NN denotes p65
T27317 306-309 NN denotes RNA
T27318 310-322 NN denotes interference
T27319 322-323 -COMMA- denotes ,
T27320 324-329 NN denotes cells
T27321 330-331 -LRB- denotes (
T27322 331-338 CD denotes 5 × 106
T27323 338-339 -RRB- denotes )
T27324 340-344 VB denotes were
T27325 345-356 VB denotes transfected
T27326 357-361 IN denotes with
T27327 362-373 NN denotes p3xFLAG-Tat
T27328 374-375 -LRB- denotes (
T27329 375-380 NN denotes 10 µg
T27330 380-381 -RRB- denotes )
T27331 382-385 CC denotes and
T27332 386-391 NN denotes siRNA
T27333 392-395 NN denotes p65
T27334 396-398 CC denotes or
T27335 399-404 NN denotes siRNA
T27336 405-412 NN denotes control
T27337 413-414 -LRB- denotes (
T27338 414-422 NN denotes 200 pmol
T27339 422-423 -RRB- denotes )
T27340 425-441 CD denotes Twenty-four-hour
T27341 442-459 JJ denotes post-transfection
T27342 459-460 -COMMA- denotes ,
T27343 461-466 JJ denotes total
T27344 467-470 NN denotes RNA
T27345 471-474 VB denotes was
T27346 475-484 VB denotes extracted
T27347 485-488 CC denotes and
T27348 489-497 VB denotes analysed
T27349 498-500 IN denotes by
T27350 501-510 JJ denotes real-time
T27351 511-514 NN denotes PCR
T27352 515-517 TO denotes to
T27353 518-526 VB denotes evaluate
T27354 527-530 DT denotes the
T27355 531-541 NN denotes expression
T27356 542-544 IN denotes of
T27357 545-551 NN denotes MIP-1α
T27358 552-553 -LRB- denotes (
T27359 553-554 NN denotes A
T27360 554-555 -RRB- denotes )
T27361 555-556 -COMMA- denotes ,
T27362 557-561 NN denotes CSF3
T27363 562-563 -LRB- denotes (
T27364 563-564 NN denotes B
T27365 564-565 -RRB- denotes )
T27366 565-566 -COMMA- denotes ,
T27367 567-570 NN denotes LTA
T27368 571-572 -LRB- denotes (
T27369 572-573 NN denotes C
T27370 573-574 -RRB- denotes )
T27371 574-575 -COMMA- denotes ,
T27372 576-582 NN denotes NFKBIA
T27373 583-584 -LRB- denotes (
T27374 584-585 NN denotes D
T27375 585-586 -RRB- denotes )
T27376 586-587 -COMMA- denotes ,
T27377 588-592 NN denotes TLR2
T27378 593-594 -LRB- denotes (
T27379 594-595 NN denotes E
T27380 595-596 -RRB- denotes )
T27381 596-597 -COMMA- denotes ,
T27382 598-603 NN denotes GAPDH
T27383 604-605 -LRB- denotes (
T27384 605-606 NN denotes F
T27385 606-607 -RRB- denotes )
T27386 607-608 -COMMA- denotes ,
T27387 609-613 NN denotes ACTB
T27388 614-615 -LRB- denotes (
T27389 615-616 NN denotes G
T27390 616-617 -RRB- denotes )
T27391 618-624 NN denotes genes.
T27392 625-626 -LRB- denotes (
T27393 626-627 NN denotes H
T27394 627-628 -RRB- denotes )
T27395 629-633 NN denotes HeLa
T27396 634-639 NN denotes cells
T27397 640-641 -LRB- denotes (
T27398 641-648 CD denotes 5 × 106
T27399 648-649 -RRB- denotes )
T27400 650-654 VB denotes were
T27401 655-666 VB denotes transfected
T27402 667-671 IN denotes with
T27403 672-683 NN denotes p3xFLAG-Tat
T27404 683-684 -COMMA- denotes ,
T27405 685-687 CC denotes or
T27406 688-693 JJ denotes empty
T27407 694-700 NN denotes vector
T27408 701-702 -LRB- denotes (
T27409 702-707 NN denotes 10 µg
T27410 707-708 -RRB- denotes )
T27411 709-712 CC denotes and
T27412 713-717 NN denotes 48 h
T27413 718-723 JJ denotes later
T27414 724-728 NN denotes ChIP
T27415 729-732 VB denotes was
T27416 733-742 VB denotes performed
T27417 743-747 IN denotes with
T27418 748-756 JJ denotes anti-p65
T27419 757-765 NN denotes antibody
T27420 767-776 JJ denotes Real-time
T27421 777-780 NN denotes PCR
T27422 781-784 VB denotes was
T27423 785-794 VB denotes performed
T27424 795-799 IN denotes with
T27425 800-807 NN denotes primers
T27426 808-816 JJ denotes specific
T27427 817-820 IN denotes for
T27428 821-824 DT denotes the
T27429 825-834 VB denotes indicated
T27430 835-845 NN denotes promoters.
T27431 846-847 -LRB- denotes (
T27432 847-848 CD denotes I
T27433 848-849 -RRB- denotes )
T27434 850-854 NN denotes HeLa
T27435 855-860 NN denotes cells
T27436 861-862 -LRB- denotes (
T27437 862-869 CD denotes 5 × 106
T27438 869-870 -RRB- denotes )
T27439 871-875 VB denotes were
T27440 876-887 VB denotes transfected
T27441 888-892 IN denotes with
T27442 893-898 JJ denotes empty
T27443 899-905 NN denotes vector
T27444 905-906 -COMMA- denotes ,
T27445 907-909 CC denotes or
T27446 910-921 NN denotes p3xFLAG-Tat
T27447 922-923 -LRB- denotes (
T27448 923-928 NN denotes 10 µg
T27449 928-929 -RRB- denotes )
T27450 930-932 IN denotes in
T27451 933-941 NN denotes presence
T27452 942-944 CC denotes or
T27453 945-952 NN denotes absence
T27454 953-955 IN denotes of
T27455 956-961 NN denotes siRNA
T27456 962-965 NN denotes p65
T27457 965-966 -COMMA- denotes ,
T27458 967-969 CC denotes or
T27459 970-975 NN denotes siRNA
T27460 976-983 NN denotes control
T27461 984-985 -LRB- denotes (
T27462 985-993 NN denotes 200 pmol
T27463 993-994 -RRB- denotes )
T27464 994-995 -COLON- denotes ;
T27465 996-1000 NN denotes 48 h
T27466 1001-1006 RB denotes later
T27467 1006-1007 -COMMA- denotes ,
T27468 1008-1012 NN denotes ChIP
T27469 1013-1016 VB denotes was
T27470 1017-1026 VB denotes performed
T27471 1027-1031 IN denotes with
T27472 1032-1041 JJ denotes anti-FLAG
T27473 1042-1050 NN denotes antibody
T27474 1052-1061 JJ denotes Real-time
T27475 1062-1065 NN denotes PCR
T27476 1066-1069 VB denotes was
T27477 1070-1079 VB denotes performed
T27478 1080-1084 IN denotes with
T27479 1085-1092 NN denotes primers
T27480 1093-1101 JJ denotes specific
T27481 1102-1105 IN denotes for
T27482 1106-1109 DT denotes the
T27483 1110-1119 VB denotes indicated
T27484 1120-1130 NN denotes promoters.
T27485 1131-1132 -LRB- denotes (
T27486 1132-1133 NN denotes J
T27487 1133-1134 -RRB- denotes )
T27488 1135-1139 NN denotes HeLa
T27489 1140-1145 NN denotes cells
T27490 1146-1147 -LRB- denotes (
T27491 1147-1154 CD denotes 5 × 106
T27492 1154-1155 -RRB- denotes )
T27493 1156-1160 VB denotes were
T27494 1161-1172 VB denotes transfected
T27495 1173-1177 IN denotes with
T27496 1178-1183 JJ denotes empty
T27497 1184-1190 NN denotes vector
T27498 1190-1191 -COMMA- denotes ,
T27499 1192-1203 NN denotes p3xFLAG-Tat
T27500 1204-1205 -LRB- denotes (
T27501 1205-1210 NN denotes 10 µg
T27502 1210-1211 -RRB- denotes )
T27503 1211-1212 -COMMA- denotes ,
T27504 1213-1215 CC denotes or
T27505 1216-1221 JJ denotes empty
T27506 1222-1228 NN denotes vector
T27507 1229-1233 CC denotes plus
T27508 1234-1239 NN denotes siRNA
T27509 1240-1245 NN denotes IκB-α
T27510 1246-1248 CC denotes or
T27511 1249-1254 NN denotes siRNA
T27512 1255-1262 NN denotes control
T27513 1263-1264 -LRB- denotes (
T27514 1264-1272 NN denotes 200 pmol
T27515 1272-1273 -RRB- denotes )
T27516 1273-1274 -COLON- denotes ;
T27517 1275-1279 NN denotes 48 h
T27518 1280-1285 RB denotes later
T27519 1285-1286 -COMMA- denotes ,
T27520 1287-1291 NN denotes ChIP
T27521 1292-1295 VB denotes was
T27522 1296-1305 VB denotes performed
T27523 1306-1310 IN denotes with
T27524 1311-1321 JJ denotes anti-IκB-α
T27525 1322-1330 NN denotes antibody
T27526 1332-1341 JJ denotes Real-time
T27527 1342-1345 NN denotes PCR
T27528 1346-1349 VB denotes was
T27529 1350-1359 VB denotes performed
T27530 1360-1364 IN denotes with
T27531 1365-1372 NN denotes primers
T27532 1373-1381 JJ denotes specific
T27533 1382-1385 IN denotes for
T27534 1386-1389 DT denotes the
T27535 1390-1399 JJ denotes indicated
T27536 1400-1409 NN denotes promoters
T27537 1411-1417 NN denotes Values
T27538 1418-1419 -LRB- denotes (
T27539 1419-1428 NN denotes mean ± SE
T27540 1428-1429 -COMMA- denotes ,
T27541 1430-1435 NN denotes n = 3
T27542 1435-1436 -RRB- denotes )
T27543 1437-1440 VB denotes are
T27544 1441-1446 VB denotes shown
T27545 1448-1451 DT denotes The
T27546 1452-1461 NN denotes asterisks
T27547 1462-1470 VB denotes indicate
T27548 1471-1484 RB denotes statistically
T27549 1485-1496 JJ denotes significant
T27550 1497-1508 NN denotes differences
T27551 1509-1517 VB denotes compared
T27552 1518-1520 TO denotes to
T27553 1521-1524 DT denotes the
T27554 1525-1532 NN denotes control
T27555 1533-1534 -LRB- denotes (
T27556 1534-1539 JJ denotes empty
T27557 1540-1546 NN denotes vector
T27558 1546-1547 -RRB- denotes )
T27559 1548-1557 VB denotes according
T27560 1558-1560 TO denotes to
T27561 1561-1564 DT denotes the
T27562 1565-1572 NN denotes Student
T27563 1572-1574 POS denotes 's
T27564 1575-1581 NN denotes t-test
T27565 1582-1583 -LRB- denotes (
T27566 1583-1585 NN denotes P 
T27567 1585-1586 SYM denotes <
T27568 1586-1591 CD denotes  0.05
T27569 1591-1592 -RRB- denotes )
R21360 T27266 T27280 arg1Of Tat,promoting
R21368 T27275 T27279 arg1Of occupying,and
R21369 T27278 T27275 arg2Of enhancers,occupying
R21370 T27278 T27276 arg1Of enhancers,the
R21371 T27278 T27277 arg1Of enhancers,NF-κB
R21373 T27280 T27279 arg2Of promoting,and
R21374 T27283 T27280 arg2Of recruitment,promoting
R21375 T27283 T27281 arg1Of recruitment,the
R21376 T27283 T27282 arg1Of recruitment,p65
R21377 T27283 T27284 arg1Of recruitment,with
R21378 T27286 T27284 arg2Of displacement,with
R21379 T27286 T27285 arg1Of displacement,IκB-α
R21380 T27288 T27287 arg1Of cells,HeLa
R21381 T27288 T27289 arg1Of cells,(
R21382 T27288 T27292 arg1Of cells,were
R21383 T27288 T27293 arg2Of cells,transfected
R21384 T27290 T27289 arg2Of 5 × 106,(
R21385 T27291 T27289 arg3Of ),(
R21386 T27293 T27292 arg2Of transfected,were
R21387 T27293 T27294 arg1Of transfected,with
R21388 T27293 T27314 arg1Of transfected,;
R21389 T27295 T27296 arg1Of p3xFLAG-Tat,","
R21390 T27296 T27302 arg1Of ",",","
R21391 T27298 T27296 arg2Of C,","
R21392 T27298 T27297 arg1Of C,p3xFLAG-Tat
R21393 T27298 T27299 arg1Of C,(
R21394 T27300 T27299 arg2Of "22,25,27",(
R21395 T27301 T27299 arg3Of ),(
R21396 T27302 T27308 arg1Of ",",or
R21397 T27304 T27302 arg2Of R,","
R21398 T27304 T27303 arg1Of R,p3xFLAG-Tat
R21399 T27304 T27305 arg1Of R,(
R21400 T27306 T27305 arg2Of 49–57,(
R21401 T27307 T27305 arg3Of ),(
R21402 T27308 T27294 arg2Of or,with
R21403 T27310 T27308 arg2Of vector,or
R21404 T27310 T27309 arg1Of vector,empty
R21405 T27310 T27311 arg1Of vector,(
R21406 T27312 T27311 arg2Of 10 µg,(
R21407 T27313 T27311 arg3Of ),(
R21408 T27318 T27315 arg2Of interference,for
R21409 T27318 T27316 arg1Of interference,p65
R21410 T27318 T27317 arg1Of interference,RNA
R21411 T27320 T27321 arg1Of cells,(
R21412 T27320 T27324 arg1Of cells,were
R21413 T27320 T27325 arg2Of cells,transfected
R21414 T27322 T27321 arg2Of 5 × 106,(
R21415 T27323 T27321 arg3Of ),(
R21416 T27325 T27314 arg2Of transfected,;
R21417 T27325 T27315 arg1Of transfected,for
R21418 T27325 T27319 arg1Of transfected,","
R21419 T27325 T27324 arg2Of transfected,were
R21420 T27325 T27326 arg1Of transfected,with
R21421 T27327 T27328 arg1Of p3xFLAG-Tat,(
R21422 T27327 T27331 arg1Of p3xFLAG-Tat,and
R21423 T27329 T27328 arg2Of 10 µg,(
R21424 T27330 T27328 arg3Of ),(
R21425 T27331 T27334 arg1Of and,or
R21426 T27333 T27331 arg2Of p65,and
R21427 T27333 T27332 arg1Of p65,siRNA
R21428 T27334 T27326 arg2Of or,with
R21429 T27336 T27334 arg2Of control,or
R21430 T27336 T27335 arg1Of control,siRNA
R21431 T27336 T27337 arg1Of control,(
R21432 T27338 T27337 arg2Of 200 pmol,(
R21433 T27339 T27337 arg3Of ),(
R21434 T27341 T27342 arg1Of post-transfection,","
R21435 T27343 T27342 arg2Of total,","
R21436 T27344 T27340 arg1Of RNA,Twenty-four-hour
R21437 T27344 T27341 arg1Of RNA,post-transfection
R21438 T27344 T27343 arg1Of RNA,total
R21439 T27344 T27345 arg1Of RNA,was
R21440 T27344 T27346 arg2Of RNA,extracted
R21441 T27344 T27348 arg2Of RNA,analysed
R21442 T27346 T27347 arg1Of extracted,and
R21443 T27347 T27345 arg2Of and,was
R21444 T27347 T27352 modOf and,to
R21445 T27348 T27347 arg2Of analysed,and
R21446 T27351 T27346 arg1Of PCR,extracted
R21447 T27351 T27348 arg1Of PCR,analysed
R21448 T27351 T27349 arg2Of PCR,by
R21449 T27351 T27350 arg1Of PCR,real-time
R21450 T27353 T27352 arg1Of evaluate,to
R21451 T27355 T27354 arg1Of expression,the
R21452 T27355 T27356 arg1Of expression,of
R21453 T27355 T27415 arg1Of expression,was
R21454 T27355 T27416 arg2Of expression,performed
R21455 T27357 T27358 arg1Of MIP-1α,(
R21456 T27357 T27361 arg1Of MIP-1α,","
R21457 T27359 T27358 arg2Of A,(
R21458 T27360 T27358 arg3Of ),(
R21459 T27361 T27366 arg1Of ",",","
R21460 T27362 T27361 arg2Of CSF3,","
R21461 T27362 T27363 arg1Of CSF3,(
R21462 T27364 T27363 arg2Of B,(
R21463 T27365 T27363 arg3Of ),(
R21464 T27366 T27371 arg1Of ",",","
R21465 T27367 T27366 arg2Of LTA,","
R21466 T27367 T27368 arg1Of LTA,(
R21467 T27369 T27368 arg2Of C,(
R21468 T27370 T27368 arg3Of ),(
R21469 T27371 T27356 arg2Of ",",of
R21470 T27372 T27373 arg1Of NFKBIA,(
R21471 T27372 T27376 arg1Of NFKBIA,","
R21472 T27374 T27373 arg2Of D,(
R21473 T27375 T27373 arg3Of ),(
R21474 T27376 T27381 arg1Of ",",","
R21475 T27377 T27376 arg2Of TLR2,","
R21476 T27377 T27378 arg1Of TLR2,(
R21477 T27379 T27378 arg2Of E,(
R21478 T27380 T27378 arg3Of ),(
R21479 T27381 T27386 arg1Of ",",","
R21480 T27382 T27381 arg2Of GAPDH,","
R21481 T27382 T27383 arg1Of GAPDH,(
R21482 T27384 T27383 arg2Of F,(
R21483 T27385 T27383 arg3Of ),(
R21484 T27386 T27371 arg2Of ",",","
R21485 T27386 T27400 modOf ",",were
R21486 T27387 T27386 arg2Of ACTB,","
R21487 T27387 T27388 arg1Of ACTB,(
R21488 T27389 T27388 arg2Of G,(
R21489 T27390 T27388 arg3Of ),(
R21490 T27393 T27392 arg2Of H,(
R21491 T27394 T27392 arg3Of ),(
R21492 T27396 T27391 arg1Of cells,genes.
R21493 T27396 T27392 arg1Of cells,(
R21494 T27396 T27395 arg1Of cells,HeLa
R21495 T27396 T27397 arg1Of cells,(
R21496 T27396 T27400 arg1Of cells,were
R21497 T27396 T27401 arg2Of cells,transfected
R21498 T27398 T27397 arg2Of 5 × 106,(
R21499 T27399 T27397 arg3Of ),(
R21500 T27401 T27400 arg2Of transfected,were
R21501 T27401 T27402 arg1Of transfected,with
R21502 T27403 T27405 arg1Of p3xFLAG-Tat,or
R21503 T27405 T27402 arg2Of or,with
R21504 T27405 T27404 arg1Of or,","
R21505 T27407 T27406 arg1Of vector,empty
R21506 T27407 T27408 arg1Of vector,(
R21507 T27407 T27411 arg1Of vector,and
R21508 T27409 T27408 arg2Of 10 µg,(
R21509 T27410 T27408 arg3Of ),(
R21510 T27411 T27405 arg2Of and,or
R21511 T27414 T27411 arg2Of ChIP,and
R21512 T27414 T27412 arg1Of ChIP,48 h
R21513 T27414 T27413 arg1Of ChIP,later
R21514 T27416 T27353 arg2Of performed,evaluate
R21515 T27416 T27415 arg2Of performed,was
R21516 T27416 T27417 arg1Of performed,with
R21517 T27419 T27417 arg2Of antibody,with
R21518 T27419 T27418 arg1Of antibody,anti-p65
R21519 T27421 T27420 arg1Of PCR,Real-time
R21520 T27421 T27422 arg1Of PCR,was
R21521 T27421 T27423 arg2Of PCR,performed
R21522 T27423 T27422 arg2Of performed,was
R21523 T27423 T27424 arg1Of performed,with
R21524 T27423 T27464 arg1Of performed,;
R21525 T27425 T27424 arg2Of primers,with
R21526 T27425 T27426 arg1Of primers,specific
R21527 T27425 T27439 modOf primers,were
R21528 T27426 T27427 arg1Of specific,for
R21529 T27430 T27427 arg2Of promoters.,for
R21530 T27430 T27428 arg1Of promoters.,the
R21531 T27430 T27429 arg2Of promoters.,indicated
R21532 T27432 T27431 arg2Of I,(
R21533 T27433 T27431 arg3Of ),(
R21534 T27435 T27431 arg1Of cells,(
R21535 T27435 T27434 arg1Of cells,HeLa
R21536 T27435 T27436 arg1Of cells,(
R21537 T27435 T27439 arg1Of cells,were
R21538 T27435 T27440 arg2Of cells,transfected
R21539 T27437 T27436 arg2Of 5 × 106,(
R21540 T27438 T27436 arg3Of ),(
R21541 T27440 T27439 arg2Of transfected,were
R21542 T27440 T27441 arg1Of transfected,with
R21543 T27443 T27442 arg1Of vector,empty
R21544 T27443 T27445 arg1Of vector,or
R21545 T27445 T27444 arg1Of or,","
R21546 T27445 T27458 arg1Of or,or
R21547 T27446 T27445 arg2Of p3xFLAG-Tat,or
R21548 T27446 T27447 arg1Of p3xFLAG-Tat,(
R21549 T27446 T27450 arg1Of p3xFLAG-Tat,in
R21550 T27448 T27447 arg2Of 10 µg,(
R21551 T27449 T27447 arg3Of ),(
R21552 T27451 T27452 arg1Of presence,or
R21553 T27452 T27450 arg2Of or,in
R21554 T27452 T27454 arg1Of or,of
R21555 T27453 T27452 arg2Of absence,or
R21556 T27456 T27454 arg2Of p65,of
R21557 T27456 T27455 arg1Of p65,siRNA
R21558 T27458 T27441 arg2Of or,with
R21559 T27458 T27457 arg1Of or,","
R21560 T27460 T27458 arg2Of control,or
R21561 T27460 T27459 arg1Of control,siRNA
R21562 T27460 T27461 arg1Of control,(
R21563 T27462 T27461 arg2Of 200 pmol,(
R21564 T27463 T27461 arg3Of ),(
R21565 T27466 T27465 arg1Of later,48 h
R21566 T27468 T27469 arg1Of ChIP,was
R21567 T27468 T27470 arg2Of ChIP,performed
R21568 T27470 T27464 arg2Of performed,;
R21569 T27470 T27466 arg1Of performed,later
R21570 T27470 T27467 arg1Of performed,","
R21571 T27470 T27469 arg2Of performed,was
R21572 T27470 T27471 arg1Of performed,with
R21573 T27473 T27471 arg2Of antibody,with
R21574 T27473 T27472 arg1Of antibody,anti-FLAG
R21575 T27475 T27474 arg1Of PCR,Real-time
R21576 T27475 T27476 arg1Of PCR,was
R21577 T27475 T27477 arg2Of PCR,performed
R21578 T27477 T27476 arg2Of performed,was
R21579 T27477 T27478 arg1Of performed,with
R21580 T27479 T27478 arg2Of primers,with
R21581 T27479 T27480 arg1Of primers,specific
R21582 T27480 T27481 arg1Of specific,for
R21583 T27484 T27481 arg2Of promoters.,for
R21584 T27484 T27482 arg1Of promoters.,the
R21585 T27484 T27483 arg2Of promoters.,indicated
R21586 T27484 T27485 arg1Of promoters.,(
R21587 T27486 T27485 arg2Of J,(
R21588 T27487 T27485 arg3Of ),(
R21589 T27489 T27488 arg1Of cells,HeLa
R21590 T27489 T27490 arg1Of cells,(
R21591 T27489 T27493 arg1Of cells,were
R21592 T27489 T27494 arg2Of cells,transfected
R21593 T27491 T27490 arg2Of 5 × 106,(
R21594 T27492 T27490 arg3Of ),(
R21595 T27494 T27476 modOf transfected,was
R21596 T27494 T27493 arg2Of transfected,were
R21597 T27494 T27495 arg1Of transfected,with
R21598 T27494 T27516 arg1Of transfected,;
R21599 T27497 T27496 arg1Of vector,empty
R21600 T27497 T27498 arg1Of vector,","
R21601 T27498 T27504 arg1Of ",",or
R21602 T27499 T27498 arg2Of p3xFLAG-Tat,","
R21603 T27499 T27500 arg1Of p3xFLAG-Tat,(
R21604 T27501 T27500 arg2Of 10 µg,(
R21605 T27502 T27500 arg3Of ),(
R21606 T27504 T27503 arg1Of or,","
R21607 T27504 T27510 arg1Of or,or
R21608 T27506 T27505 arg1Of vector,empty
R21609 T27506 T27507 arg1Of vector,plus
R21610 T27507 T27504 arg2Of plus,or
R21611 T27509 T27507 arg2Of IκB-α,plus
R21612 T27509 T27508 arg1Of IκB-α,siRNA
R21613 T27510 T27495 arg2Of or,with
R21614 T27512 T27510 arg2Of control,or
R21615 T27512 T27511 arg1Of control,siRNA
R21616 T27512 T27513 arg1Of control,(
R21617 T27514 T27513 arg2Of 200 pmol,(
R21618 T27515 T27513 arg3Of ),(
R21619 T27518 T27517 arg1Of later,48 h
R21620 T27520 T27521 arg1Of ChIP,was
R21621 T27520 T27522 arg2Of ChIP,performed
R21622 T27522 T27516 arg2Of performed,;
R21623 T27522 T27518 arg1Of performed,later
R21624 T27522 T27519 arg1Of performed,","
R21625 T27522 T27521 arg2Of performed,was
R21626 T27522 T27523 arg1Of performed,with
R21627 T27525 T27523 arg2Of antibody,with
R21628 T27525 T27524 arg1Of antibody,anti-IκB-α
R21629 T27527 T27526 arg1Of PCR,Real-time
R21630 T27527 T27528 arg1Of PCR,was
R21631 T27527 T27529 arg2Of PCR,performed
R21632 T27529 T27528 arg2Of performed,was
R21633 T27529 T27530 arg1Of performed,with
R21634 T27531 T27530 arg2Of primers,with
R21635 T27531 T27532 arg1Of primers,specific
R21636 T27532 T27533 arg1Of specific,for
R21637 T27536 T27533 arg2Of promoters,for
R21638 T27536 T27534 arg1Of promoters,the
R21639 T27536 T27535 arg1Of promoters,indicated
R21640 T27537 T27538 arg1Of Values,(
R21641 T27537 T27543 arg1Of Values,are
R21642 T27537 T27544 arg2Of Values,shown
R21643 T27539 T27538 arg2Of mean ± SE,(
R21644 T27539 T27540 arg1Of mean ± SE,","
R21645 T27541 T27540 arg2Of n = 3,","
R21646 T27542 T27538 arg3Of ),(
R21647 T27544 T27543 arg2Of shown,are
R21648 T27546 T27545 arg1Of asterisks,The
R21649 T27546 T27547 arg1Of asterisks,indicate
R21650 T27547 T27559 arg1Of indicate,according
R21651 T27549 T27548 arg1Of significant,statistically
R21652 T27550 T27547 arg2Of differences,indicate
R21653 T27550 T27549 arg1Of differences,significant
R21654 T27550 T27551 arg1Of differences,compared
R21655 T27552 T27551 arg2Of to,compared
R21656 T27554 T27552 arg2Of control,to
R21657 T27554 T27553 arg1Of control,the
R21658 T27554 T27555 arg1Of control,(
R21659 T27557 T27555 arg2Of vector,(
R21660 T27557 T27556 arg1Of vector,empty
R21661 T27558 T27555 arg3Of ),(
R21662 T27560 T27559 arg2Of to,according
R21663 T27562 T27561 arg1Of Student,the
R21664 T27562 T27563 arg2Of Student,'s
R21665 T27564 T27560 arg2Of t-test,to
R21666 T27564 T27563 arg1Of t-test,'s
R21667 T27564 T27565 arg1Of t-test,(
R21668 T27566 T27565 arg2Of P ,(
R21669 T27566 T27567 arg1Of P ,<
R21670 T27567 T27568 arg1Of <, 0.05
R21671 T27569 T27565 arg3Of ),(
R21358 T27266 T27267 arg1Of Tat,activates
R21359 T27266 T27275 arg1Of Tat,occupying
R21361 T27267 T27274 arg1Of activates,by
R21362 T27270 T27267 arg2Of expression,activates
R21363 T27270 T27268 arg1Of expression,the
R21364 T27270 T27269 arg1Of expression,p65-dependent
R21365 T27270 T27271 arg1Of expression,of
R21366 T27273 T27271 arg2Of genes,of
R21367 T27273 T27272 arg1Of genes,NF-κB-responsive
R21372 T27279 T27274 arg2Of and,by

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T27629 10-13 NNP denotes Tat
T27630 14-23 VBZ denotes activates
T27631 24-27 DT denotes the
T27632 28-41 JJ denotes p65-dependent
T27633 42-52 NN denotes expression
T27634 53-55 IN denotes of
T27635 56-72 JJ denotes NF-κB-responsive
T27636 73-78 NNS denotes genes
T27637 79-81 IN denotes by
T27638 82-91 VBG denotes occupying
T27639 92-95 DT denotes the
T27640 96-101 JJ denotes NF-κB
T27641 102-111 NNS denotes enhancers
T27642 112-115 CC denotes and
T27643 116-125 VBG denotes promoting
T27644 126-129 DT denotes the
T27645 130-133 CD denotes p65
T27646 134-145 NN denotes recruitment
T27647 146-150 IN denotes with
T27648 151-156 JJ denotes IκB-α
T27649 157-169 NN denotes displacement
T27650 169-170 . denotes .
T27651 171-175 NNP denotes HeLa
T27652 176-181 NNS denotes cells
T27653 182-183 -LRB- denotes (
T27654 183-184 CD denotes 5
T27655 185-186 CD denotes ×
T27656 187-190 CD denotes 106
T27657 190-191 -RRB- denotes )
T27658 192-196 VBD denotes were
T27659 197-208 VBN denotes transfected
T27660 209-213 IN denotes with
T27661 214-225 NN denotes p3xFLAG-Tat
T27662 225-226 , denotes ,
T27663 227-238 NN denotes p3xFLAG-Tat
T27664 239-240 NNP denotes C
T27665 240-241 -LRB- denotes (
T27666 241-249 CD denotes 22,25,27
T27667 249-250 -RRB- denotes )
T27668 250-251 , denotes ,
T27669 252-263 JJ denotes p3xFLAG-Tat
T27670 264-265 NN denotes R
T27671 265-266 -LRB- denotes (
T27672 266-268 CD denotes 49
T27673 269-271 CD denotes 57
T27674 271-272 -RRB- denotes )
T27675 273-275 CC denotes or
T27676 276-281 JJ denotes empty
T27677 282-288 NN denotes vector
T27678 289-290 -LRB- denotes (
T27679 290-292 CD denotes 10
T27680 293-295 NN denotes µg
T27681 295-296 -RRB- denotes )
T27682 296-297 : denotes ;
T27683 298-301 IN denotes for
T27684 302-305 CD denotes p65
T27685 306-309 NNP denotes RNA
T27686 310-322 NN denotes interference
T27687 322-323 , denotes ,
T27688 324-329 NNS denotes cells
T27689 330-331 -LRB- denotes (
T27690 331-332 CD denotes 5
T27691 333-334 CD denotes ×
T27692 335-338 CD denotes 106
T27693 338-339 -RRB- denotes )
T27694 340-344 VBD denotes were
T27695 345-356 VBN denotes transfected
T27696 357-361 IN denotes with
T27697 362-373 NN denotes p3xFLAG-Tat
T27698 374-375 -LRB- denotes (
T27699 375-377 CD denotes 10
T27700 378-380 NN denotes µg
T27701 380-381 -RRB- denotes )
T27702 382-385 CC denotes and
T27703 386-391 NNP denotes siRNA
T27704 392-395 CD denotes p65
T27705 396-398 CC denotes or
T27706 399-404 JJ denotes siRNA
T27707 405-412 NN denotes control
T27708 413-414 -LRB- denotes (
T27709 414-417 CD denotes 200
T27710 418-422 NN denotes pmol
T27711 422-423 -RRB- denotes )
T27712 423-424 . denotes .
T27713 425-441 CD denotes Twenty-four-hour
T27714 442-459 JJ denotes post-transfection
T27715 459-460 , denotes ,
T27716 461-466 JJ denotes total
T27717 467-470 NNP denotes RNA
T27718 471-474 VBD denotes was
T27719 475-484 VBN denotes extracted
T27720 485-488 CC denotes and
T27721 489-497 VBN denotes analysed
T27722 498-500 IN denotes by
T27723 501-510 JJ denotes real-time
T27724 511-514 NNP denotes PCR
T27725 515-517 TO denotes to
T27726 518-526 VB denotes evaluate
T27727 527-530 DT denotes the
T27728 531-541 NN denotes expression
T27729 542-544 IN denotes of
T27730 545-551 NNP denotes MIP-1α
T27731 552-553 -LRB- denotes (
T27732 553-554 NNP denotes A
T27733 554-555 -RRB- denotes )
T27734 555-556 , denotes ,
T27735 557-561 NNP denotes CSF3
T27736 562-563 -LRB- denotes (
T27737 563-564 NNP denotes B
T27738 564-565 -RRB- denotes )
T27739 565-566 , denotes ,
T27740 567-570 NNP denotes LTA
T27741 571-572 -LRB- denotes (
T27742 572-573 NNP denotes C
T27743 573-574 -RRB- denotes )
T27744 574-575 , denotes ,
T27745 576-582 NNP denotes NFKBIA
T27746 583-584 -LRB- denotes (
T27747 584-585 NNP denotes D
T27748 585-586 -RRB- denotes )
T27749 586-587 , denotes ,
T27750 588-592 NNP denotes TLR2
T27751 593-594 -LRB- denotes (
T27752 594-595 NNP denotes E
T27753 595-596 -RRB- denotes )
T27754 596-597 , denotes ,
T27755 598-603 NNP denotes GAPDH
T27756 604-605 -LRB- denotes (
T27757 605-606 NN denotes F
T27758 606-607 -RRB- denotes )
T27759 607-608 , denotes ,
T27760 609-613 NNP denotes ACTB
T27761 614-615 -LRB- denotes (
T27762 615-616 NNP denotes G
T27763 616-617 -RRB- denotes )
T27764 618-623 NNS denotes genes
T27765 623-624 . denotes .
T27766 625-626 -LRB- denotes (
T27767 626-627 NNP denotes H
T27768 627-628 -RRB- denotes )
T27769 629-633 NNP denotes HeLa
T27770 634-639 NNS denotes cells
T27771 640-641 -LRB- denotes (
T27772 641-642 CD denotes 5
T27773 643-644 CD denotes ×
T27774 645-648 CD denotes 106
T27775 648-649 -RRB- denotes )
T27776 650-654 VBD denotes were
T27777 655-666 VBN denotes transfected
T27778 667-671 IN denotes with
T27779 672-683 NN denotes p3xFLAG-Tat
T27780 683-684 , denotes ,
T27781 685-687 CC denotes or
T27782 688-693 JJ denotes empty
T27783 694-700 NN denotes vector
T27784 701-702 -LRB- denotes (
T27785 702-704 CD denotes 10
T27786 705-707 NN denotes µg
T27787 707-708 -RRB- denotes )
T27788 709-712 CC denotes and
T27789 713-715 CD denotes 48
T27790 716-717 NN denotes h
T27791 718-723 RB denotes later
T27792 724-728 NNP denotes ChIP
T27793 729-732 VBD denotes was
T27794 733-742 VBN denotes performed
T27795 743-747 IN denotes with
T27796 748-756 JJ denotes anti-p65
T27797 757-765 NN denotes antibody
T27798 765-766 . denotes .
T27799 767-776 JJ denotes Real-time
T27800 777-780 NNP denotes PCR
T27801 781-784 VBD denotes was
T27802 785-794 VBN denotes performed
T27803 795-799 IN denotes with
T27804 800-807 NNS denotes primers
T27805 808-816 JJ denotes specific
T27806 817-820 IN denotes for
T27807 821-824 DT denotes the
T27808 825-834 VBN denotes indicated
T27809 835-844 NNS denotes promoters
T27810 844-845 . denotes .
T27811 846-847 -LRB- denotes (
T27812 847-848 PRP denotes I
T27813 848-849 -RRB- denotes )
T27814 850-854 NNP denotes HeLa
T27815 855-860 NNS denotes cells
T27816 861-862 -LRB- denotes (
T27817 862-863 CD denotes 5
T27818 864-865 CD denotes ×
T27819 866-869 CD denotes 106
T27820 869-870 -RRB- denotes )
T27821 871-875 VBD denotes were
T27822 876-887 VBN denotes transfected
T27823 888-892 IN denotes with
T27824 893-898 JJ denotes empty
T27825 899-905 NN denotes vector
T27826 905-906 , denotes ,
T27827 907-909 CC denotes or
T27828 910-921 NN denotes p3xFLAG-Tat
T27829 922-923 -LRB- denotes (
T27830 923-925 CD denotes 10
T27831 926-928 NN denotes µg
T27832 928-929 -RRB- denotes )
T27833 930-932 IN denotes in
T27834 933-941 NN denotes presence
T27835 942-944 CC denotes or
T27836 945-952 NN denotes absence
T27837 953-955 IN denotes of
T27838 956-961 NNP denotes siRNA
T27839 962-965 CD denotes p65
T27840 965-966 , denotes ,
T27841 967-969 CC denotes or
T27842 970-975 NN denotes siRNA
T27843 976-983 NN denotes control
T27844 984-985 -LRB- denotes (
T27845 985-988 CD denotes 200
T27846 989-993 NN denotes pmol
T27847 993-994 -RRB- denotes )
T27848 994-995 : denotes ;
T27849 996-998 CD denotes 48
T27850 999-1000 NN denotes h
T27851 1001-1006 RB denotes later
T27852 1006-1007 , denotes ,
T27853 1008-1012 NNP denotes ChIP
T27854 1013-1016 VBD denotes was
T27855 1017-1026 VBN denotes performed
T27856 1027-1031 IN denotes with
T27857 1032-1041 JJ denotes anti-FLAG
T27858 1042-1050 NN denotes antibody
T27859 1050-1051 . denotes .
T27860 1052-1061 JJ denotes Real-time
T27861 1062-1065 NNP denotes PCR
T27862 1066-1069 VBD denotes was
T27863 1070-1079 VBN denotes performed
T27864 1080-1084 IN denotes with
T27865 1085-1092 NNS denotes primers
T27866 1093-1101 JJ denotes specific
T27867 1102-1105 IN denotes for
T27868 1106-1109 DT denotes the
T27869 1110-1119 VBN denotes indicated
T27870 1120-1129 NNS denotes promoters
T27871 1129-1130 . denotes .
T27872 1131-1132 -LRB- denotes (
T27873 1132-1133 NNP denotes J
T27874 1133-1134 -RRB- denotes )
T27875 1135-1139 NNP denotes HeLa
T27876 1140-1145 NNS denotes cells
T27877 1146-1147 -LRB- denotes (
T27878 1147-1148 CD denotes 5
T27879 1149-1150 CD denotes ×
T27880 1151-1154 CD denotes 106
T27881 1154-1155 -RRB- denotes )
T27882 1156-1160 VBD denotes were
T27883 1161-1172 VBN denotes transfected
T27884 1173-1177 IN denotes with
T27885 1178-1183 JJ denotes empty
T27886 1184-1190 NN denotes vector
T27887 1190-1191 , denotes ,
T27888 1192-1203 NN denotes p3xFLAG-Tat
T27889 1204-1205 -LRB- denotes (
T27890 1205-1207 CD denotes 10
T27891 1208-1210 NN denotes µg
T27892 1210-1211 -RRB- denotes )
T27893 1211-1212 , denotes ,
T27894 1213-1215 CC denotes or
T27895 1216-1221 JJ denotes empty
T27896 1222-1228 NN denotes vector
T27897 1229-1233 CC denotes plus
T27898 1234-1239 NNP denotes siRNA
T27899 1240-1245 NNP denotes IκB-α
T27900 1246-1248 CC denotes or
T27901 1249-1254 NNP denotes siRNA
T27902 1255-1262 NN denotes control
T27903 1263-1264 -LRB- denotes (
T27904 1264-1267 CD denotes 200
T27905 1268-1272 NN denotes pmol
T27906 1272-1273 -RRB- denotes )
T27907 1273-1274 : denotes ;
T27908 1275-1277 CD denotes 48
T27909 1278-1279 NN denotes h
T27910 1280-1285 RB denotes later
T27911 1285-1286 , denotes ,
T27912 1287-1291 NNP denotes ChIP
T27913 1292-1295 VBD denotes was
T27914 1296-1305 VBN denotes performed
T27915 1306-1310 IN denotes with
T27916 1311-1321 JJ denotes anti-IκB-α
T27917 1322-1330 NN denotes antibody
T27918 1330-1331 . denotes .
T27919 1332-1341 JJ denotes Real-time
T27920 1342-1345 NNP denotes PCR
T27921 1346-1349 VBD denotes was
T27922 1350-1359 VBN denotes performed
T27923 1360-1364 IN denotes with
T27924 1365-1372 NNS denotes primers
T27925 1373-1381 JJ denotes specific
T27926 1382-1385 IN denotes for
T27927 1386-1389 DT denotes the
T27928 1390-1399 VBN denotes indicated
T27929 1400-1409 NNS denotes promoters
T27930 1409-1410 . denotes .
T27931 1411-1417 NNS denotes Values
T27932 1418-1419 -LRB- denotes (
T27933 1419-1423 JJ denotes mean
T27934 1424-1425 NN denotes ±
T27935 1426-1428 NNP denotes SE
T27936 1428-1429 , denotes ,
T27937 1430-1431 JJ denotes n
T27938 1432-1433 SYM denotes =
T27939 1434-1435 LS denotes 3
T27940 1435-1436 -RRB- denotes )
T27941 1437-1440 VBP denotes are
T27942 1441-1446 VBN denotes shown
T27943 1446-1447 . denotes .
T27944 1448-1451 DT denotes The
T27945 1452-1461 NNS denotes asterisks
T27946 1462-1470 VBP denotes indicate
T27947 1471-1484 RB denotes statistically
T27948 1485-1496 JJ denotes significant
T27949 1497-1508 NNS denotes differences
T27950 1509-1517 VBN denotes compared
T27951 1518-1520 TO denotes to
T27952 1521-1524 DT denotes the
T27953 1525-1532 NN denotes control
T27954 1533-1534 -LRB- denotes (
T27955 1534-1539 JJ denotes empty
T27956 1540-1546 NN denotes vector
T27957 1546-1547 -RRB- denotes )
T27958 1548-1557 VBG denotes according
T27959 1558-1560 TO denotes to
T27960 1561-1564 DT denotes the
T27961 1565-1572 NN denotes Student
T27962 1572-1574 POS denotes 's
T27963 1575-1581 JJS denotes t-test
T27964 1582-1583 -LRB- denotes (
T27965 1583-1584 NNP denotes P
T27966 1585-1586 CD denotes <
T27967 1587-1591 CD denotes 0.05
T27968 1591-1592 -RRB- denotes )
T27969 1592-1593 . denotes .
R21767 T27724 T27722 pobj PCR,by
R21768 T27725 T27726 aux to,evaluate
R21769 T27726 T27721 xcomp evaluate,analysed
R21770 T27727 T27728 det the,expression
R21771 T27728 T27726 dobj expression,evaluate
R21806 T27763 T27760 punct ),ACTB
R21807 T27764 T27729 pobj genes,of
R21808 T27765 T27719 punct .,extracted
R21809 T27766 T27777 punct (,transfected
R21810 T27767 T27770 compound H,cells
R21811 T27768 T27769 punct ),HeLa
R21812 T27769 T27770 compound HeLa,cells
R21813 T27770 T27777 nsubjpass cells,transfected
R21814 T27771 T27770 punct (,cells
R21815 T27772 T27774 nummod 5,106
R21849 T27806 T27805 prep for,specific
R21850 T27807 T27809 det the,promoters
R21851 T27808 T27809 amod indicated,promoters
R21852 T27809 T27806 pobj promoters,for
R21853 T27810 T27802 punct .,performed
R21854 T27811 T27814 punct (,HeLa
R21855 T27812 T27814 nsubj I,HeLa
R21856 T27813 T27814 punct ),HeLa
R21857 T27814 T27822 nsubjpass HeLa,transfected
R21858 T27815 T27814 dobj cells,HeLa
R21859 T27816 T27815 punct (,cells
R21860 T27817 T27819 nummod 5,106
R21861 T27818 T27819 nummod ×,106
R21862 T27819 T27815 appos 106,cells
R21863 T27820 T27815 punct ),cells
R21864 T27821 T27822 auxpass were,transfected
R21865 T27822 T27855 ccomp transfected,performed
R21866 T27823 T27822 prep with,transfected
R21867 T27824 T27825 amod empty,vector
R21868 T27825 T27823 pobj vector,with
R21869 T27826 T27825 punct ",",vector
R21870 T27827 T27825 cc or,vector
R21871 T27828 T27825 conj p3xFLAG-Tat,vector
R21872 T27829 T27828 punct (,p3xFLAG-Tat
R21873 T27830 T27831 nummod 10,µg
R21874 T27831 T27828 appos µg,p3xFLAG-Tat
R21875 T27832 T27828 punct ),p3xFLAG-Tat
R21876 T27833 T27825 prep in,vector
R21877 T27834 T27833 pobj presence,in
R21878 T27835 T27834 cc or,presence
R21879 T27836 T27834 conj absence,presence
R21880 T27837 T27836 prep of,absence
R21881 T27838 T27839 compound siRNA,p65
R21882 T27839 T27837 pobj p65,of
R21883 T27840 T27839 punct ",",p65
R21884 T27841 T27839 cc or,p65
R21885 T27842 T27843 compound siRNA,control
R21886 T27843 T27839 conj control,p65
R21887 T27844 T27846 punct (,pmol
R21888 T27845 T27846 nummod 200,pmol
R21889 T27846 T27843 appos pmol,control
R21890 T27847 T27822 punct ),transfected
R21891 T27848 T27855 punct ;,performed
R21892 T27849 T27850 nummod 48,h
R21893 T27850 T27851 npadvmod h,later
R21894 T27851 T27855 advmod later,performed
R21895 T27852 T27855 punct ",",performed
R21896 T27853 T27855 nsubjpass ChIP,performed
R21897 T27854 T27855 auxpass was,performed
R21898 T27855 T27855 ROOT performed,performed
R21899 T27856 T27855 prep with,performed
R21900 T27857 T27858 amod anti-FLAG,antibody
R21901 T27858 T27856 pobj antibody,with
R21902 T27859 T27855 punct .,performed
R21903 T27860 T27861 compound Real-time,PCR
R21904 T27861 T27863 nsubjpass PCR,performed
R21905 T27862 T27863 auxpass was,performed
R21906 T27863 T27863 ROOT performed,performed
R21907 T27864 T27863 prep with,performed
R21908 T27865 T27864 pobj primers,with
R21909 T27866 T27865 amod specific,primers
R21910 T27867 T27866 prep for,specific
R21911 T27868 T27870 det the,promoters
R21912 T27869 T27870 amod indicated,promoters
R21913 T27870 T27867 pobj promoters,for
R21914 T27871 T27863 punct .,performed
R21915 T27872 T27883 punct (,transfected
R21916 T27873 T27876 compound J,cells
R21917 T27874 T27875 punct ),HeLa
R21918 T27875 T27876 compound HeLa,cells
R21919 T27876 T27883 nsubjpass cells,transfected
R21920 T27877 T27876 punct (,cells
R21921 T27878 T27880 nummod 5,106
R21922 T27879 T27880 nummod ×,106
R21923 T27880 T27876 appos 106,cells
R21924 T27881 T27876 punct ),cells
R21925 T27882 T27883 auxpass were,transfected
R21926 T27883 T27914 advcl transfected,performed
R21927 T27884 T27883 prep with,transfected
R21928 T27885 T27886 amod empty,vector
R21929 T27886 T27884 pobj vector,with
R21930 T27887 T27886 punct ",",vector
R21931 T27888 T27886 conj p3xFLAG-Tat,vector
R21932 T27889 T27888 punct (,p3xFLAG-Tat
R21933 T27890 T27891 nummod 10,µg
R21934 T27891 T27888 appos µg,p3xFLAG-Tat
R21935 T27892 T27888 punct ),p3xFLAG-Tat
R21936 T27893 T27888 punct ",",p3xFLAG-Tat
R21937 T27894 T27888 cc or,p3xFLAG-Tat
R21938 T27895 T27896 amod empty,vector
R21939 T27896 T27888 conj vector,p3xFLAG-Tat
R21940 T27897 T27896 cc plus,vector
R21941 T27898 T27899 compound siRNA,IκB-α
R21942 T27899 T27896 conj IκB-α,vector
R21943 T27900 T27899 cc or,IκB-α
R21944 T27901 T27902 compound siRNA,control
R21945 T27902 T27899 conj control,IκB-α
R21946 T27903 T27902 punct (,control
R21947 T27904 T27905 nummod 200,pmol
R21948 T27905 T27902 appos pmol,control
R21949 T27906 T27902 punct ),control
R21950 T27907 T27899 punct ;,IκB-α
R21951 T27908 T27909 nummod 48,h
R21952 T27909 T27910 npadvmod h,later
R21953 T27910 T27899 conj later,IκB-α
R21954 T27911 T27914 punct ",",performed
R21955 T27912 T27914 nsubjpass ChIP,performed
R21956 T27913 T27914 auxpass was,performed
R21957 T27914 T27914 ROOT performed,performed
R21958 T27915 T27914 prep with,performed
R21959 T27916 T27917 amod anti-IκB-α,antibody
R21960 T27917 T27915 pobj antibody,with
R21961 T27918 T27914 punct .,performed
R21962 T27919 T27920 compound Real-time,PCR
R21963 T27920 T27922 nsubjpass PCR,performed
R21964 T27921 T27922 auxpass was,performed
R21965 T27922 T27922 ROOT performed,performed
R21966 T27923 T27922 prep with,performed
R21967 T27924 T27923 pobj primers,with
R21968 T27925 T27924 amod specific,primers
R21969 T27926 T27925 prep for,specific
R21970 T27927 T27929 det the,promoters
R21971 T27928 T27929 amod indicated,promoters
R21972 T27929 T27926 pobj promoters,for
R21973 T27930 T27922 punct .,performed
R21974 T27931 T27942 nsubjpass Values,shown
R21975 T27932 T27935 punct (,SE
R21976 T27933 T27935 amod mean,SE
R21977 T27934 T27935 compound ±,SE
R21978 T27935 T27931 appos SE,Values
R21979 T27936 T27935 punct ",",SE
R21980 T27937 T27935 appos n,SE
R21981 T27938 T27939 punct =,3
R21982 T27939 T27937 nummod 3,n
R21983 T27940 T27935 punct ),SE
R21984 T27941 T27942 auxpass are,shown
R21985 T27942 T27942 ROOT shown,shown
R21986 T27943 T27942 punct .,shown
R21987 T27944 T27945 det The,asterisks
R21988 T27945 T27946 nsubj asterisks,indicate
R21989 T27946 T27946 ROOT indicate,indicate
R21990 T27947 T27948 advmod statistically,significant
R21991 T27948 T27949 amod significant,differences
R21992 T27949 T27946 dobj differences,indicate
R21993 T27950 T27949 acl compared,differences
R21994 T27951 T27950 prep to,compared
R21995 T27952 T27953 det the,control
R21996 T27953 T27951 pobj control,to
R21997 T27954 T27953 punct (,control
R21998 T27955 T27956 amod empty,vector
R21999 T27956 T27953 appos vector,control
R22000 T27957 T27953 punct ),control
R22001 T27958 T27946 prep according,indicate
R22002 T27959 T27958 prep to,according
R22003 T27960 T27961 det the,Student
R22004 T27961 T27963 poss Student,t-test
R22005 T27962 T27961 case 's,Student
R22006 T27963 T27959 pobj t-test,to
R22007 T27964 T27963 punct (,t-test
R22008 T27965 T27968 nmod P,)
R22009 T27966 T27965 nummod <,P
R22010 T27967 T27965 nummod 0.05,P
R22011 T27968 T27963 punct ),t-test
R22012 T27969 T27946 punct .,indicate
R21694 T27651 T27652 compound HeLa,cells
R21780 T27737 T27735 appos B,CSF3
R21781 T27738 T27735 punct ),CSF3
R21782 T27739 T27735 punct ",",CSF3
R21783 T27740 T27735 conj LTA,CSF3
R21784 T27741 T27742 punct (,C
R21672 T27629 T27630 nsubj Tat,activates
R21673 T27630 T27630 ROOT activates,activates
R21674 T27631 T27633 det the,expression
R21675 T27632 T27633 amod p65-dependent,expression
R21676 T27633 T27630 dobj expression,activates
R21677 T27634 T27633 prep of,expression
R21678 T27635 T27636 amod NF-κB-responsive,genes
R21679 T27636 T27634 pobj genes,of
R21680 T27637 T27630 prep by,activates
R21681 T27638 T27637 pcomp occupying,by
R21682 T27639 T27641 det the,enhancers
R21683 T27640 T27641 amod NF-κB,enhancers
R21684 T27641 T27638 dobj enhancers,occupying
R21685 T27642 T27638 cc and,occupying
R21686 T27643 T27638 conj promoting,occupying
R21687 T27644 T27646 det the,recruitment
R21688 T27645 T27646 nummod p65,recruitment
R21689 T27646 T27643 dobj recruitment,promoting
R21690 T27647 T27643 prep with,promoting
R21691 T27648 T27649 amod IκB-α,displacement
R21692 T27649 T27647 pobj displacement,with
R21693 T27650 T27630 punct .,activates
R21695 T27652 T27659 nsubjpass cells,transfected
R21696 T27653 T27652 punct (,cells
R21697 T27654 T27656 nummod 5,106
R21698 T27655 T27656 nummod ×,106
R21699 T27656 T27652 appos 106,cells
R21700 T27657 T27652 punct ),cells
R21701 T27658 T27659 auxpass were,transfected
R21702 T27659 T27659 ROOT transfected,transfected
R21703 T27660 T27659 prep with,transfected
R21704 T27661 T27660 pobj p3xFLAG-Tat,with
R21705 T27662 T27659 punct ",",transfected
R21706 T27663 T27664 compound p3xFLAG-Tat,C
R21707 T27664 T27659 npadvmod C,transfected
R21708 T27665 T27664 punct (,C
R21709 T27666 T27664 appos "22,25,27",C
R21710 T27667 T27664 punct ),C
R21711 T27668 T27664 punct ",",C
R21712 T27669 T27670 amod p3xFLAG-Tat,R
R21713 T27670 T27664 appos R,C
R21714 T27671 T27673 punct (,57
R21715 T27672 T27673 nummod 49,57
R21716 T27673 T27670 appos 57,R
R21717 T27674 T27673 punct ),57
R21718 T27675 T27673 cc or,57
R21719 T27676 T27677 amod empty,vector
R21720 T27677 T27673 conj vector,57
R21721 T27678 T27677 punct (,vector
R21722 T27679 T27680 nummod 10,µg
R21723 T27680 T27677 appos µg,vector
R21724 T27681 T27677 punct ),vector
R21725 T27682 T27659 punct ;,transfected
R21726 T27683 T27659 prep for,transfected
R21727 T27684 T27686 nummod p65,interference
R21728 T27685 T27686 compound RNA,interference
R21729 T27686 T27683 pobj interference,for
R21730 T27687 T27686 punct ",",interference
R21731 T27688 T27686 appos cells,interference
R21732 T27689 T27688 punct (,cells
R21733 T27690 T27692 nummod 5,106
R21734 T27691 T27692 nummod ×,106
R21735 T27692 T27688 appos 106,cells
R21736 T27693 T27688 punct ),cells
R21737 T27694 T27695 auxpass were,transfected
R21738 T27695 T27659 conj transfected,transfected
R21739 T27696 T27695 prep with,transfected
R21740 T27697 T27696 pobj p3xFLAG-Tat,with
R21741 T27698 T27697 punct (,p3xFLAG-Tat
R21742 T27699 T27700 nummod 10,µg
R21743 T27700 T27697 appos µg,p3xFLAG-Tat
R21744 T27701 T27697 punct ),p3xFLAG-Tat
R21745 T27702 T27695 cc and,transfected
R21746 T27703 T27695 conj siRNA,transfected
R21747 T27704 T27707 nummod p65,control
R21748 T27705 T27704 cc or,p65
R21749 T27706 T27707 amod siRNA,control
R21750 T27707 T27707 ROOT control,control
R21751 T27708 T27710 punct (,pmol
R21752 T27709 T27710 nummod 200,pmol
R21753 T27710 T27707 appos pmol,control
R21754 T27711 T27710 punct ),pmol
R21755 T27712 T27659 punct .,transfected
R21756 T27713 T27714 nummod Twenty-four-hour,post-transfection
R21757 T27714 T27714 ROOT post-transfection,post-transfection
R21758 T27715 T27714 punct ",",post-transfection
R21759 T27716 T27717 amod total,RNA
R21760 T27717 T27719 nsubjpass RNA,extracted
R21761 T27718 T27719 auxpass was,extracted
R21762 T27719 T27714 conj extracted,post-transfection
R21763 T27720 T27719 cc and,extracted
R21764 T27721 T27719 conj analysed,extracted
R21765 T27722 T27721 agent by,analysed
R21766 T27723 T27724 amod real-time,PCR
R21772 T27729 T27728 prep of,expression
R21773 T27730 T27729 pobj MIP-1α,of
R21774 T27731 T27730 punct (,MIP-1α
R21775 T27732 T27730 appos A,MIP-1α
R21776 T27733 T27730 punct ),MIP-1α
R21777 T27734 T27730 punct ",",MIP-1α
R21778 T27735 T27730 conj CSF3,MIP-1α
R21779 T27736 T27737 punct (,B
R21785 T27742 T27740 parataxis C,LTA
R21786 T27743 T27742 punct ),C
R21787 T27744 T27740 punct ",",LTA
R21788 T27745 T27740 conj NFKBIA,LTA
R21789 T27746 T27747 punct (,D
R21790 T27747 T27745 appos D,NFKBIA
R21791 T27748 T27745 punct ),NFKBIA
R21792 T27749 T27745 punct ",",NFKBIA
R21793 T27750 T27745 conj TLR2,NFKBIA
R21794 T27751 T27752 punct (,E
R21795 T27752 T27750 appos E,TLR2
R21796 T27753 T27750 punct ),TLR2
R21797 T27754 T27750 punct ",",TLR2
R21798 T27755 T27750 conj GAPDH,TLR2
R21799 T27756 T27757 punct (,F
R21800 T27757 T27755 appos F,GAPDH
R21801 T27758 T27755 punct ),GAPDH
R21802 T27759 T27755 punct ",",GAPDH
R21803 T27760 T27755 conj ACTB,GAPDH
R21804 T27761 T27762 punct (,G
R21805 T27762 T27760 appos G,ACTB
R21816 T27773 T27774 nummod ×,106
R21817 T27774 T27770 appos 106,cells
R21818 T27775 T27770 punct ),cells
R21819 T27776 T27777 auxpass were,transfected
R21820 T27777 T27777 ROOT transfected,transfected
R21821 T27778 T27777 prep with,transfected
R21822 T27779 T27778 pobj p3xFLAG-Tat,with
R21823 T27780 T27779 punct ",",p3xFLAG-Tat
R21824 T27781 T27779 cc or,p3xFLAG-Tat
R21825 T27782 T27783 amod empty,vector
R21826 T27783 T27779 conj vector,p3xFLAG-Tat
R21827 T27784 T27786 punct (,µg
R21828 T27785 T27786 nummod 10,µg
R21829 T27786 T27779 appos µg,p3xFLAG-Tat
R21830 T27787 T27786 punct ),µg
R21831 T27788 T27779 cc and,p3xFLAG-Tat
R21832 T27789 T27790 nummod 48,h
R21833 T27790 T27791 npadvmod h,later
R21834 T27791 T27794 advmod later,performed
R21835 T27792 T27794 nsubjpass ChIP,performed
R21836 T27793 T27794 auxpass was,performed
R21837 T27794 T27777 conj performed,transfected
R21838 T27795 T27794 prep with,performed
R21839 T27796 T27797 amod anti-p65,antibody
R21840 T27797 T27795 pobj antibody,with
R21841 T27798 T27794 punct .,performed
R21842 T27799 T27800 compound Real-time,PCR
R21843 T27800 T27802 nsubjpass PCR,performed
R21844 T27801 T27802 auxpass was,performed
R21845 T27802 T27802 ROOT performed,performed
R21846 T27803 T27802 prep with,performed
R21847 T27804 T27803 pobj primers,with
R21848 T27805 T27804 amod specific,primers

GO-BP

Id Subject Object Predicate Lexical cue
T27981 306-322 http://purl.obolibrary.org/obo/GO_0016246 denotes RNA interference

GO-MF

Id Subject Object Predicate Lexical cue
T27982 757-765 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T27983 1042-1050 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T27984 1322-1330 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T27972 634-639 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27973 855-860 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27974 1140-1145 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27975 757-765 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T27976 1042-1050 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T27977 1322-1330 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T27978 757-765 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T27979 1042-1050 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T27980 1322-1330 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T27970 176-181 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27971 324-329 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T27258 10-170 Sentence denotes Tat activates the p65-dependent expression of NF-κB-responsive genes by occupying the NF-κB enhancers and promoting the p65 recruitment with IκB-α displacement.
T27259 171-424 Sentence denotes HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, p3xFLAG-Tat C(22,25,27), p3xFLAG-Tat R(49–57) or empty vector (10 µg); for p65 RNA interference, cells (5 × 106) were transfected with p3xFLAG-Tat (10 µg) and siRNA p65 or siRNA control (200 pmol).
T27260 425-766 Sentence denotes Twenty-four-hour post-transfection, total RNA was extracted and analysed by real-time PCR to evaluate the expression of MIP-1α (A), CSF3 (B), LTA (C), NFKBIA (D), TLR2 (E), GAPDH (F), ACTB (G) genes. (H) HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, or empty vector (10 µg) and 48 h later ChIP was performed with anti-p65 antibody.
T27261 767-1051 Sentence denotes Real-time PCR was performed with primers specific for the indicated promoters. (I) HeLa cells (5 × 106) were transfected with empty vector, or p3xFLAG-Tat (10 µg) in presence or absence of siRNA p65, or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-FLAG antibody.
T27262 1052-1331 Sentence denotes Real-time PCR was performed with primers specific for the indicated promoters. (J) HeLa cells (5 × 106) were transfected with empty vector, p3xFLAG-Tat (10 µg), or empty vector plus siRNA IκB-α or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-IκB-α antibody.
T27263 1332-1410 Sentence denotes Real-time PCR was performed with primers specific for the indicated promoters.
T27264 1411-1447 Sentence denotes Values (mean ± SE, n = 3) are shown.
T27265 1448-1593 Sentence denotes The asterisks indicate statistically significant differences compared to the control (empty vector) according to the Student's t-test (P < 0.05).
T189 0-9 Sentence denotes Figure 5.
T190 10-170 Sentence denotes Tat activates the p65-dependent expression of NF-κB-responsive genes by occupying the NF-κB enhancers and promoting the p65 recruitment with IκB-α displacement.
T191 171-424 Sentence denotes HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, p3xFLAG-Tat C(22,25,27), p3xFLAG-Tat R(49–57) or empty vector (10 µg); for p65 RNA interference, cells (5 × 106) were transfected with p3xFLAG-Tat (10 µg) and siRNA p65 or siRNA control (200 pmol).
T192 425-766 Sentence denotes Twenty-four-hour post-transfection, total RNA was extracted and analysed by real-time PCR to evaluate the expression of MIP-1α (A), CSF3 (B), LTA (C), NFKBIA (D), TLR2 (E), GAPDH (F), ACTB (G) genes. (H) HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, or empty vector (10 µg) and 48 h later ChIP was performed with anti-p65 antibody.
T193 767-1051 Sentence denotes Real-time PCR was performed with primers specific for the indicated promoters. (I) HeLa cells (5 × 106) were transfected with empty vector, or p3xFLAG-Tat (10 µg) in presence or absence of siRNA p65, or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-FLAG antibody.
T194 1052-1331 Sentence denotes Real-time PCR was performed with primers specific for the indicated promoters. (J) HeLa cells (5 × 106) were transfected with empty vector, p3xFLAG-Tat (10 µg), or empty vector plus siRNA IκB-α or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-IκB-α antibody.
T195 1332-1410 Sentence denotes Real-time PCR was performed with primers specific for the indicated promoters.
T196 1411-1447 Sentence denotes Values (mean ± SE, n = 3) are shown.
T197 1448-1593 Sentence denotes The asterisks indicate statistically significant differences compared to the control (empty vector) according to the Student's t-test (P < 0.05).

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T28144 10-13 Protein denotes Tat
T28145 28-31 Protein denotes p65
T28146 82-91 Binding denotes occupying
T28147 116-125 Positive_regulation denotes promoting
T28148 116-125 Positive_regulation denotes promoting
T28149 130-133 Protein denotes p65
T28150 134-145 Binding denotes recruitment
T28151 151-156 Protein denotes IκB-α
T28152 157-169 Binding denotes displacement true
T28153 222-225 Protein denotes Tat
T28154 235-250 Protein denotes Tat C(22,25,27)
T28155 260-272 Protein denotes Tat R(49–57)
T28156 302-305 Protein denotes p65
T28157 310-322 Negative_regulation denotes interference
T28158 370-373 Protein denotes Tat
T28159 386-395 Protein denotes siRNA p65
T28160 531-541 Gene_expression denotes expression true
T28161 531-541 Gene_expression denotes expression true
T28162 531-541 Gene_expression denotes expression true
T28163 531-541 Gene_expression denotes expression true
T28164 531-541 Gene_expression denotes expression true
T28165 531-541 Gene_expression denotes expression true
T28166 531-541 Gene_expression denotes expression true
T28167 545-551 Protein denotes MIP-1α
T28168 557-561 Protein denotes CSF3
T28169 567-570 Protein denotes LTA
T28170 576-582 Protein denotes NFKBIA
T28171 588-592 Protein denotes TLR2
T28172 598-603 Protein denotes GAPDH
T28173 609-613 Protein denotes ACTB
T28174 680-683 Protein denotes Tat
T28175 918-921 Protein denotes Tat
T28176 956-965 Protein denotes siRNA p65
T28177 1200-1203 Protein denotes Tat
T28178 1234-1245 Protein denotes siRNA IκB-α
R22087 T28144 T28146 themeOf Tat,occupying
R22088 T28144 T28148 causeOf Tat,promoting
R22089 T28144 T28147 causeOf Tat,promoting
R22090 T28149 T28150 themeOf p65,recruitment
R22091 T28149 T28152 themeOf p65,displacement
R22092 T28150 T28148 themeOf recruitment,promoting
R22093 T28151 T28152 themeOf IκB-α,displacement
R22094 T28152 T28147 themeOf displacement,promoting
R22095 T28156 T28157 themeOf p65,interference
R22096 T28167 T28162 themeOf MIP-1α,expression
R22097 T28168 T28161 themeOf CSF3,expression
R22098 T28169 T28160 themeOf LTA,expression
R22099 T28170 T28163 themeOf NFKBIA,expression
R22100 T28171 T28165 themeOf TLR2,expression
R22101 T28172 T28164 themeOf GAPDH,expression
R22102 T28173 T28166 themeOf ACTB,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T28179 10-13 Protein denotes Tat
T28180 28-31 Protein denotes p65
T28181 56-61 Protein denotes NF-κB
T28182 96-111 Protein denotes NF-κB enhancers
T28183 130-133 Protein denotes p65
T28184 151-156 Protein denotes IκB-α
T28185 82-91 Binding denotes occupying
T28186 134-145 Binding denotes recruitment
T28187 116-125 Positive_regulation denotes promoting
T28188 214-221 Protein denotes p3xFLAG
T28189 222-225 Protein denotes Tat
T28190 252-259 Protein denotes p3xFLAG
T28191 260-263 Protein denotes Tat
T28192 302-309 Protein denotes p65 RNA
T28193 386-404 Protein denotes siRNA p65 or siRNA
T28194 310-322 Negative_regulation denotes interference
T28195 545-551 Protein denotes MIP-1α
T28196 598-603 Protein denotes GAPDH
T28197 531-541 Gene_expression denotes expression
T28198 531-541 Gene_expression denotes expression
T28199 518-526 Positive_regulation denotes evaluate
T28200 518-526 Positive_regulation denotes evaluate
T28201 672-679 Protein denotes p3xFLAG
T28202 680-683 Protein denotes Tat
T28203 748-765 Protein denotes anti-p65 antibody
T28204 956-965 Protein denotes siRNA p65
T28205 1240-1245 Protein denotes IκB-α
T28206 1311-1330 Protein denotes anti-IκB-α antibody
R22103 T28182 T28185 themeOf NF-κB enhancers,occupying
R22104 T28183 T28186 themeOf p65,recruitment
R22105 T28184 T28186 themeOf IκB-α,recruitment
R22106 T28186 T28187 themeOf recruitment,promoting
R22107 T28192 T28194 themeOf p65 RNA,interference
R22108 T28195 T28197 themeOf MIP-1α,expression
R22109 T28196 T28198 themeOf GAPDH,expression
R22110 T28197 T28199 themeOf expression,evaluate
R22111 T28198 T28200 themeOf expression,evaluate

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T27195 10-13 Protein denotes Tat
T27196 28-31 Protein denotes p65
T27197 82-91 Binding denotes occupying
T27198 116-125 Positive_regulation denotes promoting
T27199 130-133 Protein denotes p65 true
T27200 134-145 Binding denotes recruitment
T27201 151-156 Protein denotes IκB-α true
T27202 157-169 Binding denotes displacement true
T27203 222-225 Protein denotes Tat true
T27204 235-251 Protein denotes Tat C(22,25,27), true
T27205 260-272 Protein denotes Tat R(49–57) true
T27206 302-305 Protein denotes p65 true
T27207 310-322 Negative_regulation denotes interference true
T27208 370-373 Protein denotes Tat
T27209 386-395 Protein denotes siRNA p65
T27210 531-541 Gene_expression denotes expression
T27211 545-551 Protein denotes MIP-1α
T27212 557-561 Protein denotes CSF3
T27213 567-570 Protein denotes LTA
T27214 576-582 Protein denotes NFKBIA
T27215 588-592 Protein denotes TLR2
T27216 598-603 Protein denotes GAPDH
T27217 609-613 Protein denotes ACTB
T27218 680-683 Protein denotes Tat
T27219 918-921 Protein denotes Tat
T27220 956-965 Protein denotes siRNA p65
T27221 1200-1203 Protein denotes Tat
T27222 1234-1245 Protein denotes siRNA IκB-α
R21327 T27195 T27197 themeOf Tat,occupying
R21328 T27195 T27198 causeOf Tat,promoting
R21329 T27199 T27202 themeOf p65,displacement
R21330 T27199 T27200 themeOf p65,recruitment
R21331 T27200 T27198 themeOf recruitment,promoting
R21332 T27201 T27202 themeOf IκB-α,displacement
R21333 T27202 T27198 themeOf displacement,promoting
R21334 T27206 T27207 themeOf p65,interference
R21341 T27217 T27210 themeOf ACTB,expression
R21335 T27211 T27210 themeOf MIP-1α,expression
R21336 T27212 T27210 themeOf CSF3,expression
R21337 T27213 T27210 themeOf LTA,expression
R21338 T27214 T27210 themeOf NFKBIA,expression
R21339 T27215 T27210 themeOf TLR2,expression
R21340 T27216 T27210 themeOf GAPDH,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T27249 576-582 Protein denotes NFKBIA
T27250 588-592 Protein denotes TLR2
T27251 598-603 Protein denotes GAPDH
T27252 609-613 Protein denotes ACTB
T27253 680-683 Protein denotes Tat
T27254 918-921 Protein denotes Tat
T27255 956-965 Protein denotes siRNA p65
T27256 1200-1203 Protein denotes Tat
T27257 1234-1245 Protein denotes siRNA IκB-α
T27223 10-13 Protein denotes Tat
T27224 28-31 Protein denotes p65
T27225 82-91 Binding denotes occupying
T27226 116-125 Positive_regulation denotes promoting
T27227 116-125 Positive_regulation denotes promoting
T27228 130-133 Protein denotes p65
T27229 134-145 Binding denotes recruitment
T27230 151-156 Protein denotes IκB-α
T27231 157-169 Binding denotes displacement true
T27232 222-225 Protein denotes Tat
T27233 235-250 Protein denotes Tat C(22,25,27)
T27234 260-272 Protein denotes Tat R(49–57)
T27235 302-305 Protein denotes p65
T27236 310-322 Negative_regulation denotes interference
T27237 370-373 Protein denotes Tat
T27238 386-395 Protein denotes siRNA p65
T27239 531-541 Gene_expression denotes expression true
T27240 531-541 Gene_expression denotes expression true
T27241 531-541 Gene_expression denotes expression true
T27242 531-541 Gene_expression denotes expression true
T27243 531-541 Gene_expression denotes expression true
T27244 531-541 Gene_expression denotes expression true
T27245 531-541 Gene_expression denotes expression true
T27246 545-551 Protein denotes MIP-1α
T27247 557-561 Protein denotes CSF3
T27248 567-570 Protein denotes LTA
R21342 T27223 T27225 themeOf Tat,occupying
R21343 T27223 T27227 causeOf Tat,promoting
R21344 T27223 T27226 causeOf Tat,promoting
R21345 T27228 T27229 themeOf p65,recruitment
R21346 T27228 T27231 themeOf p65,displacement
R21347 T27229 T27227 themeOf recruitment,promoting
R21348 T27230 T27231 themeOf IκB-α,displacement
R21349 T27231 T27226 themeOf displacement,promoting
R21350 T27235 T27236 themeOf p65,interference
R21351 T27246 T27241 themeOf MIP-1α,expression
R21352 T27247 T27240 themeOf CSF3,expression
R21353 T27248 T27239 themeOf LTA,expression
R21354 T27249 T27242 themeOf NFKBIA,expression
R21355 T27250 T27244 themeOf TLR2,expression
R21356 T27251 T27243 themeOf GAPDH,expression
R21357 T27252 T27245 themeOf ACTB,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T27570 10-13 P04608 denotes Tat
T27571 10-13 P04610 denotes Tat
T27572 10-13 Q8UMQ1 denotes Tat
T27573 10-13 P04605 denotes Tat
T27574 28-31 Q04206 denotes p65
T27575 28-31 P21579 denotes p65
T27600 567-570 P01374 denotes LTA
T27601 576-582 P25963 denotes NFKBIA
T27602 588-592 O60603 denotes TLR2
T27603 598-603 P04406 denotes GAPDH
T27604 609-613 P60709 denotes ACTB
T27605 680-683 P04610 denotes Tat
T27606 680-683 P04605 denotes Tat
T27607 680-683 P04608 denotes Tat
T27608 680-683 Q8UMQ1 denotes Tat
T27609 753-756 Q04206 denotes p65
T27610 753-756 P21579 denotes p65
T27611 918-921 Q8UMQ1 denotes Tat
T27612 918-921 P04605 denotes Tat
T27613 918-921 P04610 denotes Tat
T27614 918-921 P04608 denotes Tat
T27615 962-965 Q04206 denotes p65
T27616 962-965 P21579 denotes p65
T27617 1200-1203 P04610 denotes Tat
T27618 1200-1203 Q8UMQ1 denotes Tat
T27619 1200-1203 P04608 denotes Tat
T27620 1200-1203 P04605 denotes Tat
T27576 130-133 Q04206 denotes p65
T27577 130-133 P21579 denotes p65
T27578 222-225 P04610 denotes Tat
T27579 222-225 P04608 denotes Tat
T27580 222-225 P04605 denotes Tat
T27581 222-225 Q8UMQ1 denotes Tat
T27582 235-238 Q8UMQ1 denotes Tat
T27583 235-238 P04610 denotes Tat
T27584 235-238 P04608 denotes Tat
T27585 235-238 P04605 denotes Tat
T27586 260-263 P04610 denotes Tat
T27587 260-263 P04605 denotes Tat
T27588 260-263 P04608 denotes Tat
T27589 260-263 Q8UMQ1 denotes Tat
T27590 302-305 P21579 denotes p65
T27591 302-305 Q04206 denotes p65
T27592 370-373 P04608 denotes Tat
T27593 370-373 P04610 denotes Tat
T27594 370-373 P04605 denotes Tat
T27595 370-373 Q8UMQ1 denotes Tat
T27596 392-395 P21579 denotes p65
T27597 392-395 Q04206 denotes p65
T27598 545-551 P10147 denotes MIP-1α
T27599 557-561 P09919 denotes CSF3