PMC:3333881 / 30145-35098 JSON TXT

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2_test

Id	Subject	Object	Predicate	Lexical cue
22187158-15203102-77584451	2966-2968	15203102	denotes	56
22187158-10751368-77584452	3084-3086	10751368	denotes	57
22187158-19596987-77584453	3087-3089	19596987	denotes	58
22187158-8570619-77584454	3152-3154	8570619	denotes	59
22187158-11602715-77584455	3155-3157	11602715	denotes	60
22187158-10751368-77584456	3176-3178	10751368	denotes	57
22187158-10964543-77584457	3179-3181	10964543	denotes	61
22187158-20403075-77584458	3182-3184	20403075	denotes	62

pmc-enju-pas

Id	Subject	Object	Predicate	Lexical cue
T15237	0-3	NN	denotes	Tat
T15238	4-13	VB	denotes	activates
T15239	14-17	DT	denotes	the
T15240	18-31	JJ	denotes	p65-dependent
T15241	32-42	NN	denotes	expression
T15242	43-45	IN	denotes	of
T15243	46-62	JJ	denotes	NF-κB-responsive
T15244	63-68	NN	denotes	genes
T15245	68-69	-COMMA-	denotes	,
T15246	70-78	VB	denotes	occupies
T15247	79-82	DT	denotes	the
T15248	83-88	NN	denotes	NF-κB
T15249	89-98	NN	denotes	enhancers
T15250	99-102	CC	denotes	and
T15251	103-111	VB	denotes	promotes
T15252	112-115	DT	denotes	the
T15253	116-119	NN	denotes	p65
T15254	120-131	NN	denotes	recruitment
T15255	132-136	IN	denotes	with
T15256	137-142	NN	denotes	IκB-α
T15257	143-155	NN	denotes	displacement
T15258	156-158	PRP	denotes	We
T15259	159-167	VB	denotes	analysed
T15260	168-171	DT	denotes	the
T15261	172-178	NN	denotes	action
T15262	179-181	IN	denotes	of
T15263	182-185	NN	denotes	Tat
T15264	186-188	IN	denotes	on
T15265	189-192	DT	denotes	the
T15266	193-203	NN	denotes	expression
T15267	204-206	IN	denotes	of
T15268	207-223	JJ	denotes	NF-κB-responsive
T15269	224-229	NN	denotes	genes
T15270	230-232	FW	denotes	in
T15271	233-237	FW	denotes	vivo
T15272	239-241	TO	denotes	To
T15273	242-246	DT	denotes	this
T15274	247-250	NN	denotes	end
T15275	250-251	-COMMA-	denotes	,
T15276	252-256	NN	denotes	HeLa
T15277	257-262	NN	denotes	cells
T15278	263-267	VB	denotes	were
T15279	268-279	VB	denotes	transfected
T15280	280-284	IN	denotes	with
T15281	285-293	NN	denotes	FLAG-Tat
T15282	293-294	-COMMA-	denotes	,
T15283	295-303	NN	denotes	FLAG-Tat
T15284	304-305	NN	denotes	C
T15285	305-306	-LRB-	denotes	(
T15286	306-314	CD	denotes	22,25,27
T15287	314-315	-RRB-	denotes	)
T15288	315-316	NN	denotes	A
T15289	317-319	CC	denotes	or
T15290	320-328	NN	denotes	FLAG-Tat
T15291	329-330	NN	denotes	R
T15292	330-331	-LRB-	denotes	(
T15293	331-336	CD	denotes	49–57
T15294	336-337	-RRB-	denotes	)
T15295	337-338	NN	denotes	A
T15296	338-339	-COMMA-	denotes	,
T15297	340-343	CC	denotes	and
T15298	344-348	NN	denotes	48 h
T15299	349-354	RB	denotes	later
T15300	355-358	DT	denotes	the
T15301	359-369	NN	denotes	expression
T15302	370-372	IN	denotes	of
T15303	373-374	DT	denotes	a
T15304	375-381	NN	denotes	number
T15305	382-384	IN	denotes	of
T15306	385-400	JJ	denotes	NF-κB-dependent
T15307	401-406	NN	denotes	genes
T15308	407-410	VB	denotes	was
T15309	411-419	VB	denotes	analysed
T15310	420-422	IN	denotes	by
T15311	423-432	JJ	denotes	real-time
T15312	433-436	NN	denotes	PCR
T15313	438-441	NN	denotes	Tat
T15314	442-455	RB	denotes	significantly
T15315	456-465	VB	denotes	increased
T15316	466-469	DT	denotes	the
T15317	470-480	NN	denotes	expression
T15318	481-483	IN	denotes	of
T15319	484-490	NN	denotes	MIP-1α
T15320	490-491	-COMMA-	denotes	,
T15321	492-496	NN	denotes	CSF3
T15322	496-497	-COMMA-	denotes	,
T15323	498-501	NN	denotes	LTA
T15324	501-502	-COMMA-	denotes	,
T15325	503-509	NN	denotes	NFKBIA
T15326	510-513	CC	denotes	and
T15327	514-518	NN	denotes	TLR2
T15328	518-519	-COMMA-	denotes	,
T15329	520-525	IN	denotes	while
T15330	526-529	DT	denotes	the
T15331	530-537	NN	denotes	mutants
T15332	538-541	NN	denotes	Tat
T15333	542-543	NN	denotes	C
T15334	543-544	-LRB-	denotes	(
T15335	544-552	CD	denotes	22,25,27
T15336	552-553	-RRB-	denotes	)
T15337	553-554	NN	denotes	A
T15338	555-558	CC	denotes	and
T15339	559-562	NN	denotes	Tat
T15340	563-564	NN	denotes	R
T15341	564-565	-LRB-	denotes	(
T15342	565-570	CD	denotes	49–57
T15343	570-571	-RRB-	denotes	)
T15344	571-572	NN	denotes	A
T15345	573-577	VB	denotes	were
T15346	578-589	JJ	denotes	ineffective
T15347	590-591	-LRB-	denotes	(
T15348	591-597	NN	denotes	Figure
T15349	598-602	NN	denotes	5A–E
T15350	602-603	-RRB-	denotes	)
T15351	605-608	DT	denotes	The
T15352	609-622	JJ	denotes	Tat-dependent
T15353	623-638	NN	denotes	transactivation
T15354	639-641	IN	denotes	of
T15355	642-645	DT	denotes	the
T15356	646-661	JJ	denotes	NF-κB-dependent
T15357	662-667	NN	denotes	genes
T15358	668-671	VB	denotes	was
T15359	672-681	VB	denotes	abolished
T15360	682-686	WRB	denotes	when
T15361	687-692	NN	denotes	cells
T15362	693-697	VB	denotes	were
T15363	698-709	VB	denotes	transfected
T15364	710-714	IN	denotes	with
T15365	715-720	NN	denotes	siRNA
T15366	721-724	NN	denotes	p65
T15367	724-725	-COMMA-	denotes	,
T15368	726-736	VB	denotes	indicating
T15369	737-741	IN	denotes	that
T15370	742-745	DT	denotes	the
T15371	746-749	NN	denotes	Tat
T15372	750-765	JJ	denotes	transcriptional
T15373	766-776	NN	denotes	activation
T15374	777-780	VB	denotes	was
T15375	781-789	VB	denotes	mediated
T15376	790-792	IN	denotes	by
T15377	793-796	NN	denotes	p65
T15378	797-798	-LRB-	denotes	(
T15379	798-804	NN	denotes	Figure
T15380	805-809	NN	denotes	5A–E
T15381	809-810	-RRB-	denotes	)
T15382	812-823	RB	denotes	Differently
T15383	823-824	-COMMA-	denotes	,
T15384	825-828	DT	denotes	the
T15385	829-839	NN	denotes	expression
T15386	840-842	IN	denotes	of
T15387	843-846	DT	denotes	the
T15388	847-864	JJ	denotes	NF-κB-independent
T15389	865-870	NN	denotes	genes
T15390	871-876	NN	denotes	GAPDH
T15391	877-880	CC	denotes	and
T15392	881-885	NN	denotes	ACTB
T15393	886-889	VB	denotes	was
T15394	890-900	JJ	denotes	unaffected
T15395	901-903	IN	denotes	by
T15396	904-913	JJ	denotes	wild-type
T15397	914-917	CC	denotes	and
T15398	918-921	NN	denotes	Tat
T15399	922-929	NN	denotes	mutants
T15400	930-931	-LRB-	denotes	(
T15401	931-937	NN	denotes	Figure
T15402	938-940	NN	denotes	5F
T15403	941-944	CC	denotes	and
T15404	945-946	NN	denotes	G
T15405	946-947	-RRB-	denotes	)
T15406	949-954	DT	denotes	These
T15407	955-962	NN	denotes	results
T15408	963-967	VB	denotes	were
T15409	968-978	JJ	denotes	consistent
T15410	979-983	IN	denotes	with
T15411	984-987	DT	denotes	the
T15412	988-999	NN	denotes	requirement
T15413	1000-1002	IN	denotes	of
T15414	1003-1007	CC	denotes	both
T15415	1008-1011	DT	denotes	the
T15416	1012-1025	JJ	denotes	cysteine-rich
T15417	1026-1029	CC	denotes	and
T15418	1030-1043	JJ	denotes	arginine-rich
T15419	1044-1051	NN	denotes	domains
T15420	1052-1054	IN	denotes	of
T15421	1055-1058	NN	denotes	Tat
T15422	1059-1061	TO	denotes	to
T15423	1062-1069	VB	denotes	enhance
T15424	1070-1073	DT	denotes	the
T15425	1074-1079	NN	denotes	NF-κB
T15426	1080-1088	NN	denotes	activity
T15427	1088-1089	-COMMA-	denotes	,
T15428	1090-1100	VB	denotes	suggesting
T15429	1101-1105	IN	denotes	that
T15430	1106-1109	DT	denotes	the
T15431	1110-1123	NN	denotes	up-regulation
T15432	1124-1126	IN	denotes	of
T15433	1127-1143	JJ	denotes	NF-κB-responsive
T15434	1144-1149	NN	denotes	genes
T15435	1150-1152	IN	denotes	by
T15436	1153-1156	NN	denotes	Tat
T15437	1157-1162	MD	denotes	might
T15438	1163-1168	VB	denotes	occur
T15439	1169-1176	IN	denotes	through
T15440	1177-1185	JJ	denotes	physical
T15441	1186-1197	NN	denotes	interaction
T15442	1198-1200	IN	denotes	of
T15443	1201-1204	DT	denotes	the
T15444	1205-1210	JJ	denotes	viral
T15445	1211-1218	NN	denotes	protein
T15446	1219-1223	IN	denotes	with
T15447	1224-1227	NN	denotes	p65
T15448	1228-1231	CC	denotes	and
T15449	1232-1237	NN	denotes	IκB-α
T15450	2833-2839	NN	denotes	MIP-1α
T15451	2839-2840	-COMMA-	denotes	,
T15452	2841-2846	WDT	denotes	which
T15453	2847-2850	VB	denotes	was
T15454	2851-2854	DT	denotes	the
T15455	2855-2861	RB	denotes	mostly
T15456	2862-2871	VB	denotes	activated
T15457	2872-2876	NN	denotes	gene
T15458	2877-2879	IN	denotes	by
T15459	2880-2883	NN	denotes	Tat
T15460	2883-2884	-COMMA-	denotes	,
T15461	2885-2892	VB	denotes	encodes
T15462	2893-2896	IN	denotes	for
T15463	2897-2898	DT	denotes	a
T15464	2899-2908	NN	denotes	chemokine
T15465	2909-2913	WDT	denotes	that
T15466	2914-2922	VB	denotes	promotes
T15467	2923-2926	DT	denotes	the
T15468	2927-2938	NN	denotes	recruitment
T15469	2939-2941	IN	denotes	of
T15470	2942-2958	JJ	denotes	pro-inflammatory
T15471	2959-2964	NN	denotes	cells
T15472	2965-2966	-LRB-	denotes	(
T15473	2966-2968	CD	denotes	56
T15474	2968-2969	-RRB-	denotes	)
T15475	2971-2983	RB	denotes	Consistently
T15476	2984-2988	IN	denotes	with
T15477	2989-2992	PRP-DOLLAR-	denotes	our
T15478	2993-3001	NN	denotes	findings
T15479	3001-3002	-COMMA-	denotes	,
T15480	3003-3009	NN	denotes	MIP-1α
T15481	3010-3020	NN	denotes	expression
T15482	3021-3024	VB	denotes	was
T15483	3025-3034	VB	denotes	increased
T15484	3035-3037	IN	denotes	in
T15485	3038-3043	JJ	denotes	glial
T15486	3044-3049	NN	denotes	cells
T15487	3050-3053	CC	denotes	and
T15488	3054-3059	NN	denotes	lymph
T15489	3060-3065	NN	denotes	nodes
T15490	3066-3068	IN	denotes	of
T15491	3069-3073	NN	denotes	AIDS
T15492	3074-3082	NN	denotes	patients
T15493	3083-3084	-LRB-	denotes	(
T15494	3084-3089	CD	denotes	57,58
T15495	3089-3090	-RRB-	denotes	)
T15496	3090-3091	-COLON-	denotes	;
T15497	3092-3100	RB	denotes	moreover
T15498	3100-3101	-COMMA-	denotes	,
T15499	3102-3108	NN	denotes	MIP-1α
T15500	3109-3119	NN	denotes	production
T15501	3120-3123	VB	denotes	was
T15502	3124-3131	VB	denotes	induced
T15503	3132-3134	IN	denotes	by
T15504	3135-3140	NN	denotes	HIV-1
T15505	3141-3150	NN	denotes	infection
T15506	3151-3152	-LRB-	denotes	(
T15507	3152-3157	CD	denotes	59,60
T15508	3157-3158	-RRB-	denotes	)
T15509	3159-3162	CC	denotes	and
T15510	3163-3166	NN	denotes	Tat
T15511	3167-3174	NN	denotes	protein
T15512	3175-3176	-LRB-	denotes	(
T15513	3176-3184	CD	denotes	57,61,62
T15514	3184-3185	-RRB-	denotes	)
T15515	3187-3190	DT	denotes	The
T15516	3191-3206	JJ	denotes	transcriptional
T15517	3207-3217	NN	denotes	regulation
T15518	3218-3220	IN	denotes	of
T15519	3221-3227	NN	denotes	MIP-1α
T15520	3228-3231	VB	denotes	has
T15521	3232-3236	VB	denotes	been
T15522	3237-3243	RB	denotes	poorly
T15523	3244-3257	VB	denotes	characterized
T15524	3259-3271	JJ	denotes	Jaspar-based
T15525	3272-3280	NN	denotes	analysis
T15526	3281-3282	-LRB-	denotes	(
T15527	3282-3286	NN	denotes	http
T15528	3286-3287	-COLON-	denotes	:
T15529	3287-3308	LS	denotes	//jaspar.genereg.net/
T15530	3308-3309	-RRB-	denotes	)
T15531	3310-3319	VB	denotes	predicted
T15532	3320-3325	CD	denotes	three
T15533	3326-3334	JJ	denotes	putative
T15534	3335-3340	NN	denotes	NF-κB
T15535	3341-3350	NN	denotes	enhancers
T15536	3351-3353	IN	denotes	in
T15537	3354-3357	DT	denotes	the
T15538	3358-3366	JJ	denotes	proximal
T15539	3367-3375	NN	denotes	promoter
T15540	3376-3382	NN	denotes	region
T15541	3383-3385	IN	denotes	of
T15542	3386-3389	DT	denotes	the
T15543	3390-3396	NN	denotes	MIP-1α
T15544	3397-3401	NN	denotes	gene
T15545	3401-3402	-COLON-	denotes	:
T15546	3403-3409	NN	denotes	NF-κB1
T15547	3409-3410	-COMMA-	denotes	,
T15548	3411-3422	CD	denotes	−1023/−1014
T15549	3423-3434	NN	denotes	nucleotides
T15550	3434-3435	-COLON-	denotes	;
T15551	3436-3442	NN	denotes	NF-κB2
T15552	3442-3443	-COMMA-	denotes	,
T15553	3444-3453	CD	denotes	−661/−652
T15554	3454-3465	NN	denotes	nucleotides
T15555	3465-3466	-COLON-	denotes	;
T15556	3467-3473	NN	denotes	NF-κB3
T15557	3473-3474	-COMMA-	denotes	,
T15558	3475-3484	CD	denotes	+370/+379
T15559	3485-3496	NN	denotes	nucleotides
T15560	3497-3498	-LRB-	denotes	(
T15561	3498-3511	JJ	denotes	Supplementary
T15562	3512-3518	NN	denotes	Figure
T15563	3519-3522	NN	denotes	S3A
T15564	3522-3523	-RRB-	denotes	)
T15565	3525-3527	TO	denotes	To
T15566	3528-3536	VB	denotes	validate
T15567	3537-3540	DT	denotes	the
T15568	3541-3550	VB	denotes	predicted
T15569	3551-3556	NN	denotes	NF-κB
T15570	3557-3564	NN	denotes	binding
T15571	3565-3570	NN	denotes	sites
T15572	3571-3573	IN	denotes	of
T15573	3574-3577	DT	denotes	the
T15574	3578-3584	NN	denotes	MIP-1α
T15575	3585-3593	NN	denotes	promoter
T15576	3593-3594	-COMMA-	denotes	,
T15577	3595-3597	PRP	denotes	we
T15578	3598-3608	VB	denotes	stimulated
T15579	3609-3613	NN	denotes	HeLa
T15580	3614-3619	NN	denotes	cells
T15581	3620-3624	IN	denotes	with
T15582	3625-3630	NN	denotes	TNF-α
T15583	3630-3631	-COMMA-	denotes	,
T15584	3632-3633	DT	denotes	a
T15585	3634-3644	JJ	denotes	well-known
T15586	3645-3650	NN	denotes	NF-κB
T15587	3651-3658	NN	denotes	inducer
T15588	3658-3659	-COMMA-	denotes	,
T15589	3660-3663	CC	denotes	and
T15590	3664-3672	VB	denotes	measured
T15591	3673-3676	DT	denotes	the
T15592	3677-3687	NN	denotes	expression
T15593	3688-3694	NN	denotes	levels
T15594	3695-3697	IN	denotes	of
T15595	3698-3704	NN	denotes	MIP-1α
T15596	3705-3707	IN	denotes	by
T15597	3708-3717	JJ	denotes	real-time
T15598	3718-3721	NN	denotes	PCR
T15599	3721-3722	-COMMA-	denotes	,
T15600	3723-3726	CC	denotes	and
T15601	3727-3730	DT	denotes	the
T15602	3731-3734	NN	denotes	p65
T15603	3735-3744	NN	denotes	occupancy
T15604	3745-3747	IN	denotes	of
T15605	3748-3751	DT	denotes	the
T15606	3752-3757	NN	denotes	NF-κB
T15607	3758-3763	NN	denotes	sites
T15608	3764-3766	IN	denotes	by
T15609	3767-3771	NN	denotes	ChIP
T15610	3773-3778	NN	denotes	TNF-α
T15611	3779-3788	VB	denotes	activated
T15612	3789-3792	DT	denotes	the
T15613	3793-3803	NN	denotes	expression
T15614	3804-3806	IN	denotes	of
T15615	3807-3813	NN	denotes	MIP-1α
T15616	3814-3817	CC	denotes	and
T15617	3818-3825	VB	denotes	induced
T15618	3826-3829	DT	denotes	the
T15619	3830-3833	NN	denotes	p65
T15620	3834-3845	NN	denotes	recruitment
T15621	3846-3848	TO	denotes	to
T15622	3849-3852	DT	denotes	the
T15623	3853-3859	NN	denotes	NF-κB1
T15624	3860-3864	NN	denotes	site
T15625	3865-3867	IN	denotes	of
T15626	3868-3874	NN	denotes	MIP-1α
T15627	3875-3882	IN	denotes	without
T15628	3883-3892	VB	denotes	affecting
T15629	3893-3896	DT	denotes	the
T15630	3897-3906	NN	denotes	occupancy
T15631	3907-3909	IN	denotes	of
T15632	3910-3913	DT	denotes	the
T15633	3914-3922	JJ	denotes	putative
T15634	3923-3929	NN	denotes	NF-κB2
T15635	3930-3933	CC	denotes	and
T15636	3934-3940	NN	denotes	NF-κB3
T15637	3941-3946	NN	denotes	sites
T15638	3947-3948	-LRB-	denotes	(
T15639	3948-3961	JJ	denotes	Supplementary
T15640	3962-3968	NNP	denotes	Figure
T15641	3969-3972	NN	denotes	S3B
T15642	3973-3976	CC	denotes	and
T15643	3977-3980	NN	denotes	S3C
T15644	3980-3981	-RRB-	denotes	)
T15645	3983-3986	NN	denotes	Tat
T15646	3987-3991	RB	denotes	also
T15647	3992-4000	VB	denotes	promoted
T15648	4001-4004	DT	denotes	the
T15649	4005-4016	NN	denotes	recruitment
T15650	4017-4019	IN	denotes	of
T15651	4020-4023	NN	denotes	p65
T15652	4024-4026	TO	denotes	to
T15653	4027-4030	DT	denotes	the
T15654	4031-4037	NN	denotes	NF-κB1
T15655	4038-4042	NN	denotes	site
T15656	4043-4045	IN	denotes	of
T15657	4046-4052	NN	denotes	MIP-1α
T15658	4052-4053	-COMMA-	denotes	,
T15659	4054-4059	IN	denotes	while
T15660	4060-4062	PRP	denotes	it
T15661	4063-4066	VB	denotes	did
T15662	4067-4070	RB	denotes	not
T15663	4071-4077	VB	denotes	affect
T15664	4078-4081	DT	denotes	the
T15665	4082-4090	JJ	denotes	putative
T15666	4091-4097	NN	denotes	NF-κB2
T15667	4098-4101	CC	denotes	and
T15668	4102-4108	NN	denotes	NF-κB3
T15669	4109-4114	NN	denotes	sites
T15670	4115-4116	-LRB-	denotes	(
T15671	4116-4129	JJ	denotes	Supplementary
T15672	4130-4136	NNP	denotes	Figure
T15673	4137-4140	NN	denotes	S3D
T15674	4140-4141	-RRB-	denotes	)
T15675	4143-4153	RB	denotes	Altogether
T15676	4154-4159	DT	denotes	these
T15677	4160-4167	NN	denotes	results
T15678	4168-4177	VB	denotes	indicated
T15679	4178-4182	IN	denotes	that
T15680	4183-4186	DT	denotes	the
T15681	4187-4193	NN	denotes	NF-κB1
T15682	4194-4198	NN	denotes	site
T15683	4199-4202	VB	denotes	was
T15684	4203-4206	DT	denotes	the
T15685	4207-4211	RB	denotes	only
T15686	4212-4221	JJ	denotes	effective
T15687	4222-4227	NN	denotes	NF-κB
T15688	4228-4236	NN	denotes	enhancer
T15689	4237-4239	IN	denotes	of
T15690	4240-4243	DT	denotes	the
T15691	4244-4250	NN	denotes	MIP-1α
T15692	4251-4259	NN	denotes	promoter
T15693	4260-4262	IN	denotes	in
T15694	4263-4271	NN	denotes	response
T15695	4272-4274	TO	denotes	to
T15696	4275-4280	NN	denotes	TNF-α
T15697	4281-4284	CC	denotes	and
T15698	4285-4288	NN	denotes	Tat
T15699	4290-4299	RB	denotes	Similarly
T15700	4300-4302	TO	denotes	to
T15701	4303-4309	NN	denotes	MIP-1α
T15702	4309-4310	-COMMA-	denotes	,
T15703	4311-4314	NN	denotes	Tat
T15704	4315-4324	VB	denotes	increased
T15705	4325-4328	DT	denotes	the
T15706	4329-4340	NN	denotes	recruitment
T15707	4341-4343	IN	denotes	of
T15708	4344-4347	NN	denotes	p65
T15709	4348-4350	TO	denotes	to
T15710	4351-4354	DT	denotes	the
T15711	4355-4360	NN	denotes	NF-κB
T15712	4361-4370	NN	denotes	enhancers
T15713	4371-4373	IN	denotes	of
T15714	4374-4378	NN	denotes	CSF3
T15715	4378-4379	-COMMA-	denotes	,
T15716	4380-4383	NN	denotes	LTA
T15717	4383-4384	-COMMA-	denotes	,
T15718	4385-4391	NN	denotes	NFKBIA
T15719	4392-4395	CC	denotes	and
T15720	4396-4400	NN	denotes	TLR2
T15721	4400-4401	-COMMA-	denotes	,
T15722	4402-4407	IN	denotes	while
T15723	4408-4410	PRP	denotes	it
T15724	4411-4414	VB	denotes	was
T15725	4415-4426	JJ	denotes	ineffective
T15726	4427-4429	IN	denotes	at
T15727	4430-4433	DT	denotes	the
T15728	4434-4443	NN	denotes	promoters
T15729	4444-4446	IN	denotes	of
T15730	4447-4452	NN	denotes	GAPDH
T15731	4453-4456	CC	denotes	and
T15732	4457-4461	NN	denotes	ACTB
T15733	4462-4463	-LRB-	denotes	(
T15734	4463-4469	NN	denotes	Figure
T15735	4470-4472	NN	denotes	5H
T15736	4472-4473	-RRB-	denotes	)
T15737	4475-4477	IN	denotes	By
T15738	4478-4482	NN	denotes	ChIP
T15739	4482-4483	-COMMA-	denotes	,
T15740	4484-4487	NN	denotes	Tat
T15741	4488-4493	VB	denotes	bound
T15742	4494-4496	TO	denotes	to
T15743	4497-4500	DT	denotes	the
T15744	4501-4517	JJ	denotes	NF-κB-responsive
T15745	4518-4527	NN	denotes	promoters
T15746	4527-4528	-COMMA-	denotes	,
T15747	4529-4532	CC	denotes	and
T15748	4533-4536	RB	denotes	not
T15749	4537-4539	TO	denotes	to
T15750	4540-4543	DT	denotes	the
T15751	4544-4549	NN	denotes	GAPDH
T15752	4550-4553	CC	denotes	and
T15753	4554-4558	NN	denotes	ACTB
T15754	4559-4568	NN	denotes	promoters
T15755	4568-4569	-COMMA-	denotes	,
T15756	4570-4574	IN	denotes	with
T15757	4575-4579	NN	denotes	loss
T15758	4580-4582	IN	denotes	of
T15759	4583-4590	NN	denotes	binding
T15760	4591-4600	VB	denotes	following
T15761	4601-4604	NN	denotes	p65
T15762	4605-4608	NN	denotes	RNA
T15763	4609-4621	NN	denotes	interference
T15764	4622-4623	-LRB-	denotes	(
T15765	4623-4629	NN	denotes	Figure
T15766	4630-4632	NN	denotes	5I
T15767	4632-4633	-RRB-	denotes	)
T15768	4633-4634	-COMMA-	denotes	,
T15769	4635-4645	VB	denotes	suggesting
T15770	4646-4650	IN	denotes	that
T15771	4651-4654	NN	denotes	Tat
T15772	4655-4664	NN	denotes	occupancy
T15773	4665-4673	VB	denotes	occurred
T15774	4674-4677	IN	denotes	via
T15775	4678-4681	NN	denotes	p65
T15776	4682-4693	NN	denotes	interaction
T15777	4695-4697	IN	denotes	As
T15778	4698-4708	JJ	denotes	additional
T15779	4709-4717	NN	denotes	findings
T15780	4717-4718	-COMMA-	denotes	,
T15781	4719-4724	NN	denotes	IκB-α
T15782	4725-4728	VB	denotes	was
T15783	4729-4757	JJ	denotes	chromatin-immunoprecipitated
T15784	4758-4760	IN	denotes	at
T15785	4761-4764	DT	denotes	the
T15786	4765-4770	NN	denotes	NF-κB
T15787	4771-4780	NN	denotes	enhancers
T15788	4781-4783	IN	denotes	in
T15789	4784-4791	NN	denotes	absence
T15790	4792-4794	IN	denotes	of
T15791	4795-4798	NN	denotes	Tat
T15792	4798-4799	-COMMA-	denotes	,
T15793	4800-4803	CC	denotes	and
T15794	4804-4806	PRP	denotes	it
T15795	4807-4810	VB	denotes	was
T15796	4811-4824	RB	denotes	significantly
T15797	4825-4832	VB	denotes	removed
T15798	4833-4835	IN	denotes	in
T15799	4836-4844	NN	denotes	presence
T15800	4845-4847	IN	denotes	of
T15801	4848-4851	NN	denotes	Tat
T15802	4851-4852	-COMMA-	denotes	,
T15803	4853-4855	CC	denotes	or
T15804	4856-4865	VB	denotes	following
T15805	4866-4871	JJ	denotes	IκB-α
T15806	4872-4875	NN	denotes	RNA
T15807	4876-4888	NN	denotes	interference
T15808	4889-4890	-LRB-	denotes	(
T15809	4890-4896	NN	denotes	Figure
T15810	4897-4899	NN	denotes	5J
T15811	4899-4900	-RRB-	denotes	)
T15812	4900-4901	-COMMA-	denotes	,
T15813	4902-4912	VB	denotes	indicating
T15814	4913-4917	IN	denotes	that
T15815	4918-4921	NN	denotes	Tat
T15816	4922-4931	VB	denotes	displaced
T15817	4932-4937	JJ	denotes	IκB-α
T15818	4938-4942	IN	denotes	from
T15819	4943-4952	NN	denotes	promoters
T27266	1249-1252	NN	denotes	Tat
T27267	1253-1262	VB	denotes	activates
T27268	1263-1266	DT	denotes	the
T27269	1267-1280	JJ	denotes	p65-dependent
T27270	1281-1291	NN	denotes	expression
T27271	1292-1294	IN	denotes	of
T27272	1295-1311	JJ	denotes	NF-κB-responsive
T27273	1312-1317	NN	denotes	genes
T27274	1318-1320	IN	denotes	by
T27275	1321-1330	VB	denotes	occupying
T27276	1331-1334	DT	denotes	the
T27277	1335-1340	NN	denotes	NF-κB
T27278	1341-1350	NN	denotes	enhancers
T27279	1351-1354	CC	denotes	and
T27280	1355-1364	VB	denotes	promoting
T27281	1365-1368	DT	denotes	the
T27282	1369-1372	NN	denotes	p65
T27283	1373-1384	NN	denotes	recruitment
T27284	1385-1389	IN	denotes	with
T27285	1390-1395	JJ	denotes	IκB-α
T27286	1396-1408	NN	denotes	displacement
T27287	1410-1414	NN	denotes	HeLa
T27288	1415-1420	NN	denotes	cells
T27289	1421-1422	-LRB-	denotes	(
T27290	1422-1429	CD	denotes	5 × 106
T27291	1429-1430	-RRB-	denotes	)
T27292	1431-1435	VB	denotes	were
T27293	1436-1447	VB	denotes	transfected
T27294	1448-1452	IN	denotes	with
T27295	1453-1464	NN	denotes	p3xFLAG-Tat
T27296	1464-1465	-COMMA-	denotes	,
T27297	1466-1477	NN	denotes	p3xFLAG-Tat
T27298	1478-1479	NN	denotes	C
T27299	1479-1480	-LRB-	denotes	(
T27300	1480-1488	CD	denotes	22,25,27
T27301	1488-1489	-RRB-	denotes	)
T27302	1489-1490	-COMMA-	denotes	,
T27303	1491-1502	NN	denotes	p3xFLAG-Tat
T27304	1503-1504	NN	denotes	R
T27305	1504-1505	-LRB-	denotes	(
T27306	1505-1510	CD	denotes	49–57
T27307	1510-1511	-RRB-	denotes	)
T27308	1512-1514	CC	denotes	or
T27309	1515-1520	JJ	denotes	empty
T27310	1521-1527	NN	denotes	vector
T27311	1528-1529	-LRB-	denotes	(
T27312	1529-1534	NN	denotes	10 µg
T27313	1534-1535	-RRB-	denotes	)
T27314	1535-1536	-COLON-	denotes	;
T27315	1537-1540	IN	denotes	for
T27316	1541-1544	NN	denotes	p65
T27317	1545-1548	NN	denotes	RNA
T27318	1549-1561	NN	denotes	interference
T27319	1561-1562	-COMMA-	denotes	,
T27320	1563-1568	NN	denotes	cells
T27321	1569-1570	-LRB-	denotes	(
T27322	1570-1577	CD	denotes	5 × 106
T27323	1577-1578	-RRB-	denotes	)
T27324	1579-1583	VB	denotes	were
T27325	1584-1595	VB	denotes	transfected
T27326	1596-1600	IN	denotes	with
T27327	1601-1612	NN	denotes	p3xFLAG-Tat
T27328	1613-1614	-LRB-	denotes	(
T27329	1614-1619	NN	denotes	10 µg
T27330	1619-1620	-RRB-	denotes	)
T27331	1621-1624	CC	denotes	and
T27332	1625-1630	NN	denotes	siRNA
T27333	1631-1634	NN	denotes	p65
T27334	1635-1637	CC	denotes	or
T27335	1638-1643	NN	denotes	siRNA
T27336	1644-1651	NN	denotes	control
T27337	1652-1653	-LRB-	denotes	(
T27338	1653-1661	NN	denotes	200 pmol
T27339	1661-1662	-RRB-	denotes	)
T27340	1664-1680	CD	denotes	Twenty-four-hour
T27341	1681-1698	JJ	denotes	post-transfection
T27342	1698-1699	-COMMA-	denotes	,
T27343	1700-1705	JJ	denotes	total
T27344	1706-1709	NN	denotes	RNA
T27345	1710-1713	VB	denotes	was
T27346	1714-1723	VB	denotes	extracted
T27347	1724-1727	CC	denotes	and
T27348	1728-1736	VB	denotes	analysed
T27349	1737-1739	IN	denotes	by
T27350	1740-1749	JJ	denotes	real-time
T27351	1750-1753	NN	denotes	PCR
T27352	1754-1756	TO	denotes	to
T27353	1757-1765	VB	denotes	evaluate
T27354	1766-1769	DT	denotes	the
T27355	1770-1780	NN	denotes	expression
T27356	1781-1783	IN	denotes	of
T27357	1784-1790	NN	denotes	MIP-1α
T27358	1791-1792	-LRB-	denotes	(
T27359	1792-1793	NN	denotes	A
T27360	1793-1794	-RRB-	denotes	)
T27361	1794-1795	-COMMA-	denotes	,
T27362	1796-1800	NN	denotes	CSF3
T27363	1801-1802	-LRB-	denotes	(
T27364	1802-1803	NN	denotes	B
T27365	1803-1804	-RRB-	denotes	)
T27366	1804-1805	-COMMA-	denotes	,
T27367	1806-1809	NN	denotes	LTA
T27368	1810-1811	-LRB-	denotes	(
T27369	1811-1812	NN	denotes	C
T27370	1812-1813	-RRB-	denotes	)
T27371	1813-1814	-COMMA-	denotes	,
T27372	1815-1821	NN	denotes	NFKBIA
T27373	1822-1823	-LRB-	denotes	(
T27374	1823-1824	NN	denotes	D
T27375	1824-1825	-RRB-	denotes	)
T27376	1825-1826	-COMMA-	denotes	,
T27377	1827-1831	NN	denotes	TLR2
T27378	1832-1833	-LRB-	denotes	(
T27379	1833-1834	NN	denotes	E
T27380	1834-1835	-RRB-	denotes	)
T27381	1835-1836	-COMMA-	denotes	,
T27382	1837-1842	NN	denotes	GAPDH
T27383	1843-1844	-LRB-	denotes	(
T27384	1844-1845	NN	denotes	F
T27385	1845-1846	-RRB-	denotes	)
T27386	1846-1847	-COMMA-	denotes	,
T27387	1848-1852	NN	denotes	ACTB
T27388	1853-1854	-LRB-	denotes	(
T27389	1854-1855	NN	denotes	G
T27390	1855-1856	-RRB-	denotes	)
T27391	1857-1863	NN	denotes	genes.
T27392	1864-1865	-LRB-	denotes	(
T27393	1865-1866	NN	denotes	H
T27394	1866-1867	-RRB-	denotes	)
T27395	1868-1872	NN	denotes	HeLa
T27396	1873-1878	NN	denotes	cells
T27397	1879-1880	-LRB-	denotes	(
T27398	1880-1887	CD	denotes	5 × 106
T27399	1887-1888	-RRB-	denotes	)
T27400	1889-1893	VB	denotes	were
T27401	1894-1905	VB	denotes	transfected
T27402	1906-1910	IN	denotes	with
T27403	1911-1922	NN	denotes	p3xFLAG-Tat
T27404	1922-1923	-COMMA-	denotes	,
T27405	1924-1926	CC	denotes	or
T27406	1927-1932	JJ	denotes	empty
T27407	1933-1939	NN	denotes	vector
T27408	1940-1941	-LRB-	denotes	(
T27409	1941-1946	NN	denotes	10 µg
T27410	1946-1947	-RRB-	denotes	)
T27411	1948-1951	CC	denotes	and
T27412	1952-1956	NN	denotes	48 h
T27413	1957-1962	JJ	denotes	later
T27414	1963-1967	NN	denotes	ChIP
T27415	1968-1971	VB	denotes	was
T27416	1972-1981	VB	denotes	performed
T27417	1982-1986	IN	denotes	with
T27418	1987-1995	JJ	denotes	anti-p65
T27419	1996-2004	NN	denotes	antibody
T27420	2006-2015	JJ	denotes	Real-time
T27421	2016-2019	NN	denotes	PCR
T27422	2020-2023	VB	denotes	was
T27423	2024-2033	VB	denotes	performed
T27424	2034-2038	IN	denotes	with
T27425	2039-2046	NN	denotes	primers
T27426	2047-2055	JJ	denotes	specific
T27427	2056-2059	IN	denotes	for
T27428	2060-2063	DT	denotes	the
T27429	2064-2073	VB	denotes	indicated
T27430	2074-2084	NN	denotes	promoters.
T27431	2085-2086	-LRB-	denotes	(
T27432	2086-2087	CD	denotes	I
T27433	2087-2088	-RRB-	denotes	)
T27434	2089-2093	NN	denotes	HeLa
T27435	2094-2099	NN	denotes	cells
T27436	2100-2101	-LRB-	denotes	(
T27437	2101-2108	CD	denotes	5 × 106
T27438	2108-2109	-RRB-	denotes	)
T27439	2110-2114	VB	denotes	were
T27440	2115-2126	VB	denotes	transfected
T27441	2127-2131	IN	denotes	with
T27442	2132-2137	JJ	denotes	empty
T27443	2138-2144	NN	denotes	vector
T27444	2144-2145	-COMMA-	denotes	,
T27445	2146-2148	CC	denotes	or
T27446	2149-2160	NN	denotes	p3xFLAG-Tat
T27447	2161-2162	-LRB-	denotes	(
T27448	2162-2167	NN	denotes	10 µg
T27449	2167-2168	-RRB-	denotes	)
T27450	2169-2171	IN	denotes	in
T27451	2172-2180	NN	denotes	presence
T27452	2181-2183	CC	denotes	or
T27453	2184-2191	NN	denotes	absence
T27454	2192-2194	IN	denotes	of
T27455	2195-2200	NN	denotes	siRNA
T27456	2201-2204	NN	denotes	p65
T27457	2204-2205	-COMMA-	denotes	,
T27458	2206-2208	CC	denotes	or
T27459	2209-2214	NN	denotes	siRNA
T27460	2215-2222	NN	denotes	control
T27461	2223-2224	-LRB-	denotes	(
T27462	2224-2232	NN	denotes	200 pmol
T27463	2232-2233	-RRB-	denotes	)
T27464	2233-2234	-COLON-	denotes	;
T27465	2235-2239	NN	denotes	48 h
T27466	2240-2245	RB	denotes	later
T27467	2245-2246	-COMMA-	denotes	,
T27468	2247-2251	NN	denotes	ChIP
T27469	2252-2255	VB	denotes	was
T27470	2256-2265	VB	denotes	performed
T27471	2266-2270	IN	denotes	with
T27472	2271-2280	JJ	denotes	anti-FLAG
T27473	2281-2289	NN	denotes	antibody
T27474	2291-2300	JJ	denotes	Real-time
T27475	2301-2304	NN	denotes	PCR
T27476	2305-2308	VB	denotes	was
T27477	2309-2318	VB	denotes	performed
T27478	2319-2323	IN	denotes	with
T27479	2324-2331	NN	denotes	primers
T27480	2332-2340	JJ	denotes	specific
T27481	2341-2344	IN	denotes	for
T27482	2345-2348	DT	denotes	the
T27483	2349-2358	VB	denotes	indicated
T27484	2359-2369	NN	denotes	promoters.
T27485	2370-2371	-LRB-	denotes	(
T27486	2371-2372	NN	denotes	J
T27487	2372-2373	-RRB-	denotes	)
T27488	2374-2378	NN	denotes	HeLa
T27489	2379-2384	NN	denotes	cells
T27490	2385-2386	-LRB-	denotes	(
T27491	2386-2393	CD	denotes	5 × 106
T27492	2393-2394	-RRB-	denotes	)
T27493	2395-2399	VB	denotes	were
T27494	2400-2411	VB	denotes	transfected
T27495	2412-2416	IN	denotes	with
T27496	2417-2422	JJ	denotes	empty
T27497	2423-2429	NN	denotes	vector
T27498	2429-2430	-COMMA-	denotes	,
T27499	2431-2442	NN	denotes	p3xFLAG-Tat
T27500	2443-2444	-LRB-	denotes	(
T27501	2444-2449	NN	denotes	10 µg
T27502	2449-2450	-RRB-	denotes	)
T27503	2450-2451	-COMMA-	denotes	,
T27504	2452-2454	CC	denotes	or
T27505	2455-2460	JJ	denotes	empty
T27506	2461-2467	NN	denotes	vector
T27507	2468-2472	CC	denotes	plus
T27508	2473-2478	NN	denotes	siRNA
T27509	2479-2484	NN	denotes	IκB-α
T27510	2485-2487	CC	denotes	or
T27511	2488-2493	NN	denotes	siRNA
T27512	2494-2501	NN	denotes	control
T27513	2502-2503	-LRB-	denotes	(
T27514	2503-2511	NN	denotes	200 pmol
T27515	2511-2512	-RRB-	denotes	)
T27516	2512-2513	-COLON-	denotes	;
T27517	2514-2518	NN	denotes	48 h
T27518	2519-2524	RB	denotes	later
T27519	2524-2525	-COMMA-	denotes	,
T27520	2526-2530	NN	denotes	ChIP
T27521	2531-2534	VB	denotes	was
T27522	2535-2544	VB	denotes	performed
T27523	2545-2549	IN	denotes	with
T27524	2550-2560	JJ	denotes	anti-IκB-α
T27525	2561-2569	NN	denotes	antibody
T27526	2571-2580	JJ	denotes	Real-time
T27527	2581-2584	NN	denotes	PCR
T27528	2585-2588	VB	denotes	was
T27529	2589-2598	VB	denotes	performed
T27530	2599-2603	IN	denotes	with
T27531	2604-2611	NN	denotes	primers
T27532	2612-2620	JJ	denotes	specific
T27533	2621-2624	IN	denotes	for
T27534	2625-2628	DT	denotes	the
T27535	2629-2638	JJ	denotes	indicated
T27536	2639-2648	NN	denotes	promoters
T27537	2650-2656	NN	denotes	Values
T27538	2657-2658	-LRB-	denotes	(
T27539	2658-2667	NN	denotes	mean ± SE
T27540	2667-2668	-COMMA-	denotes	,
T27541	2669-2674	NN	denotes	n = 3
T27542	2674-2675	-RRB-	denotes	)
T27543	2676-2679	VB	denotes	are
T27544	2680-2685	VB	denotes	shown
T27545	2687-2690	DT	denotes	The
T27546	2691-2700	NN	denotes	asterisks
T27547	2701-2709	VB	denotes	indicate
T27548	2710-2723	RB	denotes	statistically
T27549	2724-2735	JJ	denotes	significant
T27550	2736-2747	NN	denotes	differences
T27551	2748-2756	VB	denotes	compared
T27552	2757-2759	TO	denotes	to
T27553	2760-2763	DT	denotes	the
T27554	2764-2771	NN	denotes	control
T27555	2772-2773	-LRB-	denotes	(
T27556	2773-2778	JJ	denotes	empty
T27557	2779-2785	NN	denotes	vector
T27558	2785-2786	-RRB-	denotes	)
T27559	2787-2796	VB	denotes	according
T27560	2797-2799	TO	denotes	to
T27561	2800-2803	DT	denotes	the
T27562	2804-2811	NN	denotes	Student
T27563	2811-2813	POS	denotes	's
T27564	2814-2820	NN	denotes	t-test
T27565	2821-2822	-LRB-	denotes	(
T27566	2822-2824	NN	denotes	P
T27567	2824-2825	SYM	denotes	<
T27568	2825-2830	CD	denotes	0.05
T27569	2830-2831	-RRB-	denotes	)
R12187	T15237	T15238	arg1Of	Tat,activates
R12188	T15237	T15246	arg1Of	Tat,occupies
R12189	T15237	T15251	arg1Of	Tat,promotes
R12190	T15238	T15245	arg1Of	activates,","
R12191	T15241	T15238	arg2Of	expression,activates
R12192	T15241	T15239	arg1Of	expression,the
R12193	T15241	T15240	arg1Of	expression,p65-dependent
R12194	T15241	T15242	arg1Of	expression,of
R12195	T15244	T15242	arg2Of	genes,of
R12196	T15244	T15243	arg1Of	genes,NF-κB-responsive
R12197	T15245	T15250	arg1Of	",",and
R12198	T15246	T15245	arg2Of	occupies,","
R12199	T15249	T15246	arg2Of	enhancers,occupies
R12200	T15249	T15247	arg1Of	enhancers,the
R12201	T15249	T15248	arg1Of	enhancers,NF-κB
R12202	T15251	T15250	arg2Of	promotes,and
R12203	T15254	T15251	arg2Of	recruitment,promotes
R12204	T15254	T15252	arg1Of	recruitment,the
R12205	T15254	T15253	arg1Of	recruitment,p65
R12206	T15254	T15255	arg1Of	recruitment,with
R12207	T15257	T15255	arg2Of	displacement,with
R12208	T15257	T15256	arg1Of	displacement,IκB-α
R12209	T15258	T15259	arg1Of	We,analysed
R12210	T15259	T15271	arg1Of	analysed,vivo
R12211	T15261	T15259	arg2Of	action,analysed
R12212	T15261	T15260	arg1Of	action,the
R12213	T15261	T15262	arg1Of	action,of
R12214	T15261	T15264	arg1Of	action,on
R12215	T15263	T15262	arg2Of	Tat,of
R12216	T15266	T15264	arg2Of	expression,on
R12217	T15266	T15265	arg1Of	expression,the
R12218	T15266	T15267	arg1Of	expression,of
R12219	T15269	T15267	arg2Of	genes,of
R12220	T15269	T15268	arg1Of	genes,NF-κB-responsive
R12221	T15271	T15270	arg1Of	vivo,in
R12222	T15274	T15272	arg2Of	end,To
R12223	T15274	T15273	arg1Of	end,this
R12224	T15277	T15276	arg1Of	cells,HeLa
R12225	T15277	T15278	arg1Of	cells,were
R12226	T15277	T15279	arg2Of	cells,transfected
R12227	T15279	T15272	arg1Of	transfected,To
R12228	T15279	T15275	arg1Of	transfected,","
R12229	T15279	T15278	arg2Of	transfected,were
R12230	T15279	T15280	arg1Of	transfected,with
R12231	T15281	T15282	arg1Of	FLAG-Tat,","
R12232	T15282	T15289	arg1Of	",",or
R12233	T15286	T15285	arg2Of	"22,25,27",(
R12234	T15287	T15285	arg3Of	),(
R12235	T15288	T15282	arg2Of	A,","
R12236	T15288	T15283	arg1Of	A,FLAG-Tat
R12237	T15288	T15284	arg1Of	A,C
R12238	T15288	T15285	arg1Of	A,(
R12239	T15289	T15297	arg1Of	or,and
R12240	T15291	T15290	arg1Of	R,FLAG-Tat
R12241	T15291	T15292	arg1Of	R,(
R12242	T15293	T15292	arg2Of	49–57,(
R12243	T15294	T15292	arg3Of	),(
R12244	T15295	T15289	arg2Of	A,or
R12245	T15295	T15291	arg1Of	A,R
R12246	T15297	T15280	arg2Of	and,with
R12247	T15297	T15296	arg1Of	and,","
R12248	T15298	T15297	arg2Of	48 h,and
R12249	T15298	T15308	modOf	48 h,was
R12250	T15301	T15299	arg1Of	expression,later
R12251	T15301	T15300	arg1Of	expression,the
R12252	T15301	T15302	arg1Of	expression,of
R12253	T15301	T15308	arg1Of	expression,was
R12254	T15301	T15309	arg2Of	expression,analysed
R12255	T15304	T15302	arg2Of	number,of
R12256	T15304	T15303	arg1Of	number,a
R12257	T15304	T15305	arg1Of	number,of
R12258	T15307	T15305	arg2Of	genes,of
R12259	T15307	T15306	arg1Of	genes,NF-κB-dependent
R12260	T15309	T15308	arg2Of	analysed,was
R12261	T15312	T15309	arg1Of	PCR,analysed
R12262	T15312	T15310	arg2Of	PCR,by
R12263	T15312	T15311	arg1Of	PCR,real-time
R12264	T15313	T15315	arg1Of	Tat,increased
R12265	T15315	T15314	arg1Of	increased,significantly
R12266	T15315	T15328	arg1Of	increased,","
R12267	T15315	T15329	arg1Of	increased,while
R12268	T15317	T15315	arg2Of	expression,increased
R12269	T15317	T15316	arg1Of	expression,the
R12270	T15317	T15318	arg1Of	expression,of
R12271	T15319	T15320	arg1Of	MIP-1α,","
R12272	T15320	T15322	arg1Of	",",","
R12273	T15321	T15320	arg2Of	CSF3,","
R12274	T15322	T15324	arg1Of	",",","
R12275	T15323	T15322	arg2Of	LTA,","
R12276	T15324	T15326	arg1Of	",",and
R12277	T15325	T15324	arg2Of	NFKBIA,","
R12278	T15326	T15318	arg2Of	and,of
R12279	T15327	T15326	arg2Of	TLR2,and
R12280	T15335	T15334	arg2Of	"22,25,27",(
R12281	T15336	T15334	arg3Of	),(
R12282	T15337	T15332	arg1Of	A,Tat
R12283	T15337	T15333	arg1Of	A,C
R12284	T15337	T15334	arg1Of	A,(
R12285	T15337	T15338	arg1Of	A,and
R12286	T15338	T15330	arg1Of	and,the
R12287	T15338	T15331	arg1Of	and,mutants
R12288	T15338	T15345	arg1Of	and,were
R12289	T15338	T15346	arg1Of	and,ineffective
R12290	T15340	T15339	arg1Of	R,Tat
R12291	T15340	T15341	arg1Of	R,(
R12292	T15342	T15341	arg2Of	49–57,(
R12293	T15343	T15341	arg3Of	),(
R12294	T15344	T15338	arg2Of	A,and
R12295	T15344	T15340	arg1Of	A,R
R12296	T15345	T15329	arg2Of	were,while
R12297	T15346	T15345	arg2Of	ineffective,were
R12298	T15346	T15347	arg1Of	ineffective,(
R12299	T15349	T15347	arg2Of	5A–E,(
R12300	T15349	T15348	arg1Of	5A–E,Figure
R12301	T15350	T15347	arg3Of	),(
R12302	T15353	T15351	arg1Of	transactivation,The
R12303	T15353	T15352	arg1Of	transactivation,Tat-dependent
R12304	T15353	T15354	arg1Of	transactivation,of
R12305	T15353	T15358	arg1Of	transactivation,was
R12306	T15353	T15359	arg2Of	transactivation,abolished
R12307	T15357	T15354	arg2Of	genes,of
R12308	T15357	T15355	arg1Of	genes,the
R12309	T15357	T15356	arg1Of	genes,NF-κB-dependent
R12310	T15359	T15358	arg2Of	abolished,was
R12311	T15359	T15360	arg1Of	abolished,when
R12312	T15359	T15367	arg1Of	abolished,","
R12313	T15359	T15368	modOf	abolished,indicating
R12314	T15361	T15362	arg1Of	cells,were
R12315	T15361	T15363	arg2Of	cells,transfected
R12316	T15363	T15360	arg2Of	transfected,when
R12317	T15363	T15362	arg2Of	transfected,were
R12318	T15363	T15364	arg1Of	transfected,with
R12319	T15366	T15364	arg2Of	p65,with
R12320	T15366	T15365	arg1Of	p65,siRNA
R12321	T15373	T15370	arg1Of	activation,the
R12322	T15373	T15371	arg1Of	activation,Tat
R12323	T15373	T15372	arg1Of	activation,transcriptional
R12324	T15373	T15374	arg1Of	activation,was
R12325	T15373	T15375	arg2Of	activation,mediated
R12326	T15375	T15368	arg2Of	mediated,indicating
R12327	T15375	T15369	arg1Of	mediated,that
R12328	T15375	T15374	arg2Of	mediated,was
R12329	T15377	T15375	arg1Of	p65,mediated
R12330	T15377	T15376	arg2Of	p65,by
R12331	T15377	T15378	arg1Of	p65,(
R12332	T15380	T15378	arg2Of	5A–E,(
R12333	T15380	T15379	arg1Of	5A–E,Figure
R12334	T15381	T15378	arg3Of	),(
R12335	T15385	T15384	arg1Of	expression,the
R12336	T15385	T15386	arg1Of	expression,of
R12337	T15385	T15393	arg1Of	expression,was
R12338	T15385	T15394	arg2Of	expression,unaffected
R12339	T15389	T15387	arg1Of	genes,the
R12340	T15389	T15388	arg1Of	genes,NF-κB-independent
R12341	T15390	T15391	arg1Of	GAPDH,and
R12342	T15391	T15386	arg2Of	and,of
R12343	T15391	T15389	arg1Of	and,genes
R12344	T15392	T15391	arg2Of	ACTB,and
R12345	T15394	T15382	arg1Of	unaffected,Differently
R12346	T15394	T15383	arg1Of	unaffected,","
R12347	T15394	T15393	arg2Of	unaffected,was
R12348	T15394	T15395	arg1Of	unaffected,by
R12349	T15396	T15397	arg1Of	wild-type,and
R12350	T15397	T15395	arg2Of	and,by
R12351	T15397	T15400	arg1Of	and,(
R12352	T15399	T15397	arg2Of	mutants,and
R12353	T15399	T15398	arg1Of	mutants,Tat
R12354	T15402	T15401	arg1Of	5F,Figure
R12355	T15402	T15403	arg1Of	5F,and
R12356	T15403	T15400	arg2Of	and,(
R12357	T15404	T15403	arg2Of	G,and
R12358	T15405	T15400	arg3Of	),(
R12359	T15407	T15406	arg1Of	results,These
R12360	T15407	T15408	arg1Of	results,were
R12361	T15407	T15409	arg1Of	results,consistent
R12362	T15409	T15408	arg2Of	consistent,were
R12363	T15409	T15410	arg1Of	consistent,with
R12364	T15412	T15410	arg2Of	requirement,with
R12365	T15412	T15411	arg1Of	requirement,the
R12366	T15412	T15413	arg1Of	requirement,of
R12367	T15416	T15417	arg1Of	cysteine-rich,and
R12368	T15418	T15417	arg2Of	arginine-rich,and
R12369	T15419	T15413	arg2Of	domains,of
R12370	T15419	T15414	arg1Of	domains,both
R12371	T15419	T15415	arg1Of	domains,the
R12372	T15419	T15416	arg1Of	domains,cysteine-rich
R12373	T15419	T15418	arg1Of	domains,arginine-rich
R12374	T15419	T15420	arg1Of	domains,of
R12375	T15421	T15420	arg2Of	Tat,of
R12376	T15421	T15422	modOf	Tat,to
R12377	T15423	T15422	arg1Of	enhance,to
R12378	T15423	T15427	arg1Of	enhance,","
R12379	T15423	T15428	modOf	enhance,suggesting
R12380	T15426	T15423	arg2Of	activity,enhance
R12381	T15426	T15424	arg1Of	activity,the
R12382	T15426	T15425	arg1Of	activity,NF-κB
R12383	T15431	T15430	arg1Of	up-regulation,the
R12384	T15431	T15432	arg1Of	up-regulation,of
R12385	T15431	T15435	arg1Of	up-regulation,by
R12386	T15431	T15437	arg1Of	up-regulation,might
R12387	T15431	T15438	arg1Of	up-regulation,occur
R12388	T15434	T15432	arg2Of	genes,of
R12389	T15434	T15433	arg1Of	genes,NF-κB-responsive
R12390	T15436	T15435	arg2Of	Tat,by
R12391	T15438	T15428	arg2Of	occur,suggesting
R12392	T15438	T15429	arg1Of	occur,that
R12393	T15438	T15437	arg2Of	occur,might
R12394	T15438	T15439	arg1Of	occur,through
R12395	T15441	T15439	arg2Of	interaction,through
R12396	T15441	T15440	arg1Of	interaction,physical
R12397	T15441	T15442	arg1Of	interaction,of
R12398	T15441	T15446	arg1Of	interaction,with
R12399	T15445	T15442	arg2Of	protein,of
R12400	T15445	T15443	arg1Of	protein,the
R12401	T15445	T15444	arg1Of	protein,viral
R12402	T15447	T15448	arg1Of	p65,and
R12403	T15448	T15446	arg2Of	and,with
R12404	T15449	T15448	arg2Of	IκB-α,and
R12405	T15450	T15451	arg1Of	MIP-1α,","
R12406	T15450	T15452	arg1Of	MIP-1α,which
R12407	T15450	T15453	arg1Of	MIP-1α,was
R12408	T15450	T15461	arg1Of	MIP-1α,encodes
R12409	T15456	T15455	arg1Of	activated,mostly
R12410	T15457	T15453	arg2Of	gene,was
R12411	T15457	T15454	arg1Of	gene,the
R12412	T15457	T15456	arg1Of	gene,activated
R12413	T15457	T15458	arg1Of	gene,by
R12414	T15459	T15458	arg2Of	Tat,by
R12415	T15461	T15460	arg1Of	encodes,","
R12416	T15461	T15462	arg1Of	encodes,for
R12417	T15464	T15462	arg2Of	chemokine,for
R12418	T15464	T15463	arg1Of	chemokine,a
R12419	T15464	T15465	arg1Of	chemokine,that
R12420	T15464	T15466	arg1Of	chemokine,promotes
R12421	T15468	T15466	arg2Of	recruitment,promotes
R12422	T15468	T15467	arg1Of	recruitment,the
R12423	T15468	T15469	arg1Of	recruitment,of
R12424	T15471	T15469	arg2Of	cells,of
R12425	T15471	T15470	arg1Of	cells,pro-inflammatory
R12426	T15471	T15472	arg1Of	cells,(
R12427	T15473	T15472	arg2Of	56,(
R12428	T15474	T15472	arg3Of	),(
R12429	T15478	T15476	arg2Of	findings,with
R12430	T15478	T15477	arg1Of	findings,our
R12431	T15481	T15480	arg1Of	expression,MIP-1α
R12432	T15481	T15482	arg1Of	expression,was
R12433	T15481	T15483	arg2Of	expression,increased
R12434	T15483	T15475	arg1Of	increased,Consistently
R12435	T15483	T15476	arg1Of	increased,with
R12436	T15483	T15479	arg1Of	increased,","
R12437	T15483	T15482	arg2Of	increased,was
R12438	T15483	T15484	arg1Of	increased,in
R12439	T15483	T15496	arg1Of	increased,;
R12440	T15486	T15485	arg1Of	cells,glial
R12441	T15486	T15487	arg1Of	cells,and
R12442	T15487	T15484	arg2Of	and,in
R12443	T15489	T15487	arg2Of	nodes,and
R12444	T15489	T15488	arg1Of	nodes,lymph
R12445	T15489	T15490	arg1Of	nodes,of
R12446	T15492	T15490	arg2Of	patients,of
R12447	T15492	T15491	arg1Of	patients,AIDS
R12448	T15492	T15493	arg1Of	patients,(
R12449	T15494	T15493	arg2Of	"57,58",(
R12450	T15495	T15493	arg3Of	),(
R12451	T15500	T15499	arg1Of	production,MIP-1α
R12452	T15500	T15501	arg1Of	production,was
R12453	T15500	T15502	arg2Of	production,induced
R12454	T15502	T15496	arg2Of	induced,;
R12455	T15502	T15497	arg1Of	induced,moreover
R12456	T15502	T15498	arg1Of	induced,","
R12457	T15502	T15501	arg2Of	induced,was
R12458	T15505	T15504	arg1Of	infection,HIV-1
R12459	T15505	T15506	arg1Of	infection,(
R12460	T15505	T15509	arg1Of	infection,and
R12461	T15507	T15506	arg2Of	"59,60",(
R12462	T15508	T15506	arg3Of	),(
R12463	T15509	T15502	arg1Of	and,induced
R12464	T15509	T15503	arg2Of	and,by
R12465	T15511	T15509	arg2Of	protein,and
R12466	T15511	T15510	arg1Of	protein,Tat
R12467	T15511	T15512	arg1Of	protein,(
R12468	T15513	T15512	arg2Of	"57,61,62",(
R12469	T15514	T15512	arg3Of	),(
R12470	T15517	T15515	arg1Of	regulation,The
R12471	T15517	T15516	arg1Of	regulation,transcriptional
R12472	T15517	T15518	arg1Of	regulation,of
R12473	T15517	T15520	arg1Of	regulation,has
R12474	T15517	T15521	arg1Of	regulation,been
R12475	T15517	T15523	arg2Of	regulation,characterized
R12476	T15519	T15518	arg2Of	MIP-1α,of
R12477	T15523	T15520	arg2Of	characterized,has
R12478	T15523	T15521	arg2Of	characterized,been
R12479	T15523	T15522	arg1Of	characterized,poorly
R12480	T15525	T15524	arg1Of	analysis,Jaspar-based
R12481	T15525	T15526	arg1Of	analysis,(
R12482	T15525	T15531	arg1Of	analysis,predicted
R12483	T15527	T15526	arg2Of	http,(
R12484	T15528	T15526	arg3Of	:,(
R12485	T15529	T15530	arg1Of	//jaspar.genereg.net/,)
R12486	T15531	T15529	arg1Of	predicted,//jaspar.genereg.net/
R12487	T15535	T15531	arg2Of	enhancers,predicted
R12488	T15535	T15532	arg1Of	enhancers,three
R12489	T15535	T15533	arg1Of	enhancers,putative
R12490	T15535	T15534	arg1Of	enhancers,NF-κB
R12491	T15535	T15536	arg1Of	enhancers,in
R12492	T15535	T15545	arg1Of	enhancers,:
R12493	T15540	T15536	arg2Of	region,in
R12494	T15540	T15537	arg1Of	region,the
R12495	T15540	T15538	arg1Of	region,proximal
R12496	T15540	T15539	arg1Of	region,promoter
R12497	T15540	T15541	arg1Of	region,of
R12498	T15544	T15541	arg2Of	gene,of
R12499	T15544	T15542	arg1Of	gene,the
R12500	T15544	T15543	arg1Of	gene,MIP-1α
R12501	T15546	T15545	arg2Of	NF-κB1,:
R12502	T15546	T15547	arg1Of	NF-κB1,","
R12503	T15546	T15550	arg1Of	NF-κB1,;
R12504	T15549	T15547	arg2Of	nucleotides,","
R12505	T15549	T15548	arg1Of	nucleotides,−1023/−1014
R12506	T15551	T15550	arg2Of	NF-κB2,;
R12507	T15551	T15552	arg1Of	NF-κB2,","
R12508	T15551	T15555	arg1Of	NF-κB2,;
R12509	T15554	T15552	arg2Of	nucleotides,","
R12510	T15554	T15553	arg1Of	nucleotides,−661/−652
R12511	T15556	T15555	arg2Of	NF-κB3,;
R12512	T15556	T15557	arg1Of	NF-κB3,","
R12513	T15559	T15557	arg2Of	nucleotides,","
R12514	T15559	T15558	arg1Of	nucleotides,+370/+379
R12515	T15559	T15560	arg1Of	nucleotides,(
R12516	T15563	T15560	arg2Of	S3A,(
R12517	T15563	T15561	arg1Of	S3A,Supplementary
R12518	T15563	T15562	arg1Of	S3A,Figure
R12519	T15564	T15560	arg3Of	),(
R12520	T15566	T15565	arg1Of	validate,To
R12521	T15571	T15566	arg2Of	sites,validate
R12522	T15571	T15567	arg1Of	sites,the
R12523	T15571	T15568	arg2Of	sites,predicted
R12524	T15571	T15569	arg1Of	sites,NF-κB
R12525	T15571	T15570	arg1Of	sites,binding
R12526	T15571	T15572	arg1Of	sites,of
R12527	T15575	T15572	arg2Of	promoter,of
R12528	T15575	T15573	arg1Of	promoter,the
R12529	T15575	T15574	arg1Of	promoter,MIP-1α
R12530	T15577	T15566	arg1Of	we,validate
R12531	T15577	T15578	arg1Of	we,stimulated
R12532	T15577	T15590	arg1Of	we,measured
R12533	T15578	T15581	arg1Of	stimulated,with
R12534	T15578	T15589	arg1Of	stimulated,and
R12535	T15580	T15578	arg2Of	cells,stimulated
R12536	T15580	T15579	arg1Of	cells,HeLa
R12537	T15582	T15581	arg2Of	TNF-α,with
R12538	T15582	T15583	arg1Of	TNF-α,","
R12539	T15587	T15583	arg2Of	inducer,","
R12540	T15587	T15584	arg1Of	inducer,a
R12541	T15587	T15585	arg1Of	inducer,well-known
R12542	T15587	T15586	arg1Of	inducer,NF-κB
R12543	T15589	T15565	modOf	and,To
R12544	T15589	T15576	arg1Of	and,","
R12545	T15589	T15588	arg1Of	and,","
R12546	T15590	T15589	arg2Of	measured,and
R12547	T15593	T15591	arg1Of	levels,the
R12548	T15593	T15592	arg1Of	levels,expression
R12549	T15593	T15594	arg1Of	levels,of
R12550	T15593	T15600	arg1Of	levels,and
R12551	T15595	T15594	arg2Of	MIP-1α,of
R12552	T15595	T15596	arg1Of	MIP-1α,by
R12553	T15598	T15596	arg2Of	PCR,by
R12554	T15598	T15597	arg1Of	PCR,real-time
R12555	T15600	T15590	arg2Of	and,measured
R12556	T15600	T15599	arg1Of	and,","
R12557	T15603	T15600	arg2Of	occupancy,and
R12558	T15603	T15601	arg1Of	occupancy,the
R12559	T15603	T15602	arg1Of	occupancy,p65
R12560	T15603	T15604	arg1Of	occupancy,of
R12561	T15603	T15608	arg1Of	occupancy,by
R12562	T15607	T15604	arg2Of	sites,of
R12563	T15607	T15605	arg1Of	sites,the
R12564	T15607	T15606	arg1Of	sites,NF-κB
R12565	T15609	T15608	arg2Of	ChIP,by
R12566	T15610	T15611	arg1Of	TNF-α,activated
R12567	T15610	T15617	arg1Of	TNF-α,induced
R12568	T15610	T15628	arg1Of	TNF-α,affecting
R12569	T15611	T15616	arg1Of	activated,and
R12570	T15613	T15611	arg2Of	expression,activated
R12571	T15613	T15612	arg1Of	expression,the
R12572	T15613	T15614	arg1Of	expression,of
R12573	T15615	T15614	arg2Of	MIP-1α,of
R12574	T15617	T15616	arg2Of	induced,and
R12575	T15617	T15627	arg1Of	induced,without
R12576	T15620	T15617	arg2Of	recruitment,induced
R12577	T15620	T15618	arg1Of	recruitment,the
R12578	T15620	T15619	arg1Of	recruitment,p65
R12579	T15620	T15621	arg1Of	recruitment,to
R12580	T15624	T15621	arg2Of	site,to
R12581	T15624	T15622	arg1Of	site,the
R12582	T15624	T15623	arg1Of	site,NF-κB1
R12583	T15624	T15625	arg1Of	site,of
R12584	T15626	T15625	arg2Of	MIP-1α,of
R12585	T15628	T15627	arg2Of	affecting,without
R12586	T15630	T15628	arg2Of	occupancy,affecting
R12587	T15630	T15629	arg1Of	occupancy,the
R12588	T15630	T15631	arg1Of	occupancy,of
R12589	T15634	T15635	arg1Of	NF-κB2,and
R12590	T15636	T15635	arg2Of	NF-κB3,and
R12591	T15637	T15631	arg2Of	sites,of
R12592	T15637	T15632	arg1Of	sites,the
R12593	T15637	T15633	arg1Of	sites,putative
R12594	T15637	T15634	arg1Of	sites,NF-κB2
R12595	T15637	T15636	arg1Of	sites,NF-κB3
R12596	T15637	T15638	arg1Of	sites,(
R12597	T15641	T15639	arg1Of	S3B,Supplementary
R12598	T15641	T15640	arg1Of	S3B,Figure
R12599	T15641	T15642	arg1Of	S3B,and
R12600	T15642	T15638	arg2Of	and,(
R12601	T15643	T15642	arg2Of	S3C,and
R12602	T15644	T15638	arg3Of	),(
R12603	T15645	T15647	arg1Of	Tat,promoted
R12604	T15647	T15646	arg1Of	promoted,also
R12605	T15647	T15658	arg1Of	promoted,","
R12606	T15647	T15659	arg1Of	promoted,while
R12607	T15649	T15647	arg2Of	recruitment,promoted
R12608	T15649	T15648	arg1Of	recruitment,the
R12609	T15649	T15650	arg1Of	recruitment,of
R12610	T15649	T15652	arg1Of	recruitment,to
R12611	T15651	T15650	arg2Of	p65,of
R12612	T15655	T15652	arg2Of	site,to
R12613	T15655	T15653	arg1Of	site,the
R12614	T15655	T15654	arg1Of	site,NF-κB1
R12615	T15655	T15656	arg1Of	site,of
R12616	T15657	T15656	arg2Of	MIP-1α,of
R12617	T15660	T15661	arg1Of	it,did
R12618	T15660	T15663	arg1Of	it,affect
R12619	T15663	T15659	arg2Of	affect,while
R12620	T15663	T15661	arg2Of	affect,did
R12621	T15663	T15662	arg1Of	affect,not
R12622	T15666	T15667	arg1Of	NF-κB2,and
R12623	T15668	T15667	arg2Of	NF-κB3,and
R12624	T15669	T15663	arg2Of	sites,affect
R12625	T15669	T15664	arg1Of	sites,the
R12626	T15669	T15665	arg1Of	sites,putative
R12627	T15669	T15666	arg1Of	sites,NF-κB2
R12628	T15669	T15668	arg1Of	sites,NF-κB3
R12629	T15669	T15670	arg1Of	sites,(
R12630	T15673	T15670	arg2Of	S3D,(
R12631	T15673	T15671	arg1Of	S3D,Supplementary
R12632	T15673	T15672	arg1Of	S3D,Figure
R12633	T15674	T15670	arg3Of	),(
R12634	T15677	T15676	arg1Of	results,these
R12635	T15677	T15678	arg1Of	results,indicated
R12636	T15678	T15675	arg1Of	indicated,Altogether
R12637	T15682	T15680	arg1Of	site,the
R12638	T15682	T15681	arg1Of	site,NF-κB1
R12639	T15682	T15683	arg1Of	site,was
R12640	T15683	T15678	arg2Of	was,indicated
R12641	T15683	T15679	arg1Of	was,that
R12642	T15683	T15693	arg1Of	was,in
R12643	T15688	T15683	arg2Of	enhancer,was
R12644	T15688	T15684	arg1Of	enhancer,the
R12645	T15688	T15685	arg1Of	enhancer,only
R12646	T15688	T15686	arg1Of	enhancer,effective
R12647	T15688	T15687	arg1Of	enhancer,NF-κB
R12648	T15688	T15689	arg1Of	enhancer,of
R12649	T15692	T15689	arg2Of	promoter,of
R12650	T15692	T15690	arg1Of	promoter,the
R12651	T15692	T15691	arg1Of	promoter,MIP-1α
R12652	T15694	T15693	arg2Of	response,in
R12653	T15694	T15695	arg1Of	response,to
R12654	T15696	T15697	arg1Of	TNF-α,and
R12655	T15697	T15695	arg2Of	and,to
R12656	T15698	T15697	arg2Of	Tat,and
R12657	T15699	T15700	arg1Of	Similarly,to
R12658	T15701	T15700	arg2Of	MIP-1α,to
R12659	T15703	T15704	arg1Of	Tat,increased
R12660	T15704	T15699	arg1Of	increased,Similarly
R12661	T15704	T15702	arg1Of	increased,","
R12662	T15704	T15721	arg1Of	increased,","
R12663	T15704	T15722	arg1Of	increased,while
R12664	T15706	T15704	arg2Of	recruitment,increased
R12665	T15706	T15705	arg1Of	recruitment,the
R12666	T15706	T15707	arg1Of	recruitment,of
R12667	T15706	T15709	arg1Of	recruitment,to
R12668	T15706	T15713	arg1Of	recruitment,of
R12669	T15708	T15707	arg2Of	p65,of
R12670	T15712	T15709	arg2Of	enhancers,to
R12671	T15712	T15710	arg1Of	enhancers,the
R12672	T15712	T15711	arg1Of	enhancers,NF-κB
R12673	T15714	T15715	arg1Of	CSF3,","
R12674	T15715	T15717	arg1Of	",",","
R12675	T15716	T15715	arg2Of	LTA,","
R12676	T15717	T15719	arg1Of	",",and
R12677	T15718	T15717	arg2Of	NFKBIA,","
R12678	T15719	T15713	arg2Of	and,of
R12679	T15720	T15719	arg2Of	TLR2,and
R12680	T15723	T15724	arg1Of	it,was
R12681	T15723	T15725	arg1Of	it,ineffective
R12682	T15724	T15722	arg2Of	was,while
R12683	T15724	T15726	arg1Of	was,at
R12684	T15725	T15724	arg2Of	ineffective,was
R12685	T15728	T15726	arg2Of	promoters,at
R12686	T15728	T15727	arg1Of	promoters,the
R12687	T15728	T15729	arg1Of	promoters,of
R12688	T15730	T15731	arg1Of	GAPDH,and
R12689	T15731	T15729	arg2Of	and,of
R12690	T15731	T15733	arg1Of	and,(
R12691	T15732	T15731	arg2Of	ACTB,and
R12692	T15735	T15733	arg2Of	5H,(
R12693	T15735	T15734	arg1Of	5H,Figure
R12694	T15736	T15733	arg3Of	),(
R12695	T15738	T15737	arg2Of	ChIP,By
R12696	T15740	T15741	arg1Of	Tat,bound
R12697	T15741	T15737	arg1Of	bound,By
R12698	T15741	T15739	arg1Of	bound,","
R12699	T15741	T15742	arg1Of	bound,to
R12700	T15741	T15749	arg1Of	bound,to
R12701	T15741	T15755	arg1Of	bound,","
R12702	T15741	T15756	arg1Of	bound,with
R12703	T15741	T15768	arg1Of	bound,","
R12704	T15741	T15769	modOf	bound,suggesting
R12705	T15742	T15747	arg1Of	to,and
R12706	T15745	T15742	arg2Of	promoters,to
R12707	T15745	T15743	arg1Of	promoters,the
R12708	T15745	T15744	arg1Of	promoters,NF-κB-responsive
R12709	T15747	T15746	arg1Of	and,","
R12710	T15749	T15747	arg2Of	to,and
R12711	T15749	T15748	arg1Of	to,not
R12712	T15751	T15752	arg1Of	GAPDH,and
R12713	T15753	T15752	arg2Of	ACTB,and
R12714	T15754	T15749	arg2Of	promoters,to
R12715	T15754	T15750	arg1Of	promoters,the
R12716	T15754	T15751	arg1Of	promoters,GAPDH
R12717	T15754	T15753	arg1Of	promoters,ACTB
R12718	T15757	T15756	arg2Of	loss,with
R12719	T15757	T15758	arg1Of	loss,of
R12720	T15757	T15760	arg1Of	loss,following
R12721	T15759	T15758	arg2Of	binding,of
R12722	T15763	T15760	arg2Of	interference,following
R12723	T15763	T15761	arg1Of	interference,p65
R12724	T15763	T15762	arg1Of	interference,RNA
R12725	T15763	T15764	arg1Of	interference,(
R12726	T15766	T15764	arg2Of	5I,(
R12727	T15766	T15765	arg1Of	5I,Figure
R12728	T15767	T15764	arg3Of	),(
R12729	T15772	T15771	arg1Of	occupancy,Tat
R12730	T15772	T15773	arg1Of	occupancy,occurred
R12731	T15773	T15769	arg2Of	occurred,suggesting
R12732	T15773	T15770	arg1Of	occurred,that
R12733	T15773	T15774	arg1Of	occurred,via
R12734	T15776	T15774	arg2Of	interaction,via
R12735	T15776	T15775	arg1Of	interaction,p65
R12736	T15779	T15777	arg2Of	findings,As
R12737	T15779	T15778	arg1Of	findings,additional
R12738	T15781	T15782	arg1Of	IκB-α,was
R12739	T15781	T15783	arg1Of	IκB-α,chromatin-immunoprecipitated
R12740	T15782	T15784	arg1Of	was,at
R12741	T15782	T15788	arg1Of	was,in
R12742	T15782	T15793	arg1Of	was,and
R12743	T15783	T15782	arg2Of	chromatin-immunoprecipitated,was
R12744	T15787	T15784	arg2Of	enhancers,at
R12745	T15787	T15785	arg1Of	enhancers,the
R12746	T15787	T15786	arg1Of	enhancers,NF-κB
R12747	T15788	T15790	arg1Of	in,of
R12748	T15789	T15788	arg2Of	absence,in
R12749	T15791	T15788	arg3Of	Tat,in
R12750	T15793	T15777	arg1Of	and,As
R12751	T15793	T15780	arg1Of	and,","
R12752	T15793	T15792	arg1Of	and,","
R12753	T15794	T15795	arg1Of	it,was
R12754	T15794	T15797	arg2Of	it,removed
R12755	T15797	T15793	arg2Of	removed,and
R12756	T15797	T15795	arg2Of	removed,was
R12757	T15797	T15796	arg1Of	removed,significantly
R12758	T15797	T15798	arg1Of	removed,in
R12759	T15797	T15812	arg1Of	removed,","
R12760	T15797	T15813	modOf	removed,indicating
R12761	T15798	T15800	arg1Of	in,of
R12762	T15799	T15798	arg2Of	presence,in
R12763	T15801	T15803	arg1Of	Tat,or
R12764	T15803	T15798	arg3Of	or,in
R12765	T15803	T15802	arg1Of	or,","
R12766	T15804	T15803	arg2Of	following,or
R12767	T15807	T15804	arg2Of	interference,following
R12768	T15807	T15805	arg1Of	interference,IκB-α
R12769	T15807	T15806	arg1Of	interference,RNA
R12770	T15807	T15808	arg1Of	interference,(
R12771	T15810	T15808	arg2Of	5J,(
R12772	T15810	T15809	arg1Of	5J,Figure
R12773	T15811	T15808	arg3Of	),(
R12774	T15815	T15816	arg1Of	Tat,displaced
R12775	T15815	T15817	arg1Of	Tat,IκB-α
R12776	T15816	T15813	arg2Of	displaced,indicating
R12777	T15816	T15814	arg1Of	displaced,that
R12778	T15817	T15816	arg2Of	IκB-α,displaced
R12779	T15817	T15818	arg1Of	IκB-α,from
R12780	T15819	T15818	arg2Of	promoters,from
R21360	T27266	T27280	arg1Of	Tat,promoting
R21368	T27275	T27279	arg1Of	occupying,and
R21369	T27278	T27275	arg2Of	enhancers,occupying
R21370	T27278	T27276	arg1Of	enhancers,the
R21371	T27278	T27277	arg1Of	enhancers,NF-κB
R21373	T27280	T27279	arg2Of	promoting,and
R21374	T27283	T27280	arg2Of	recruitment,promoting
R21375	T27283	T27281	arg1Of	recruitment,the
R21376	T27283	T27282	arg1Of	recruitment,p65
R21377	T27283	T27284	arg1Of	recruitment,with
R21378	T27286	T27284	arg2Of	displacement,with
R21379	T27286	T27285	arg1Of	displacement,IκB-α
R21380	T27288	T27287	arg1Of	cells,HeLa
R21381	T27288	T27289	arg1Of	cells,(
R21382	T27288	T27292	arg1Of	cells,were
R21383	T27288	T27293	arg2Of	cells,transfected
R21384	T27290	T27289	arg2Of	5 × 106,(
R21385	T27291	T27289	arg3Of	),(
R21386	T27293	T27292	arg2Of	transfected,were
R21387	T27293	T27294	arg1Of	transfected,with
R21388	T27293	T27314	arg1Of	transfected,;
R21389	T27295	T27296	arg1Of	p3xFLAG-Tat,","
R21390	T27296	T27302	arg1Of	",",","
R21391	T27298	T27296	arg2Of	C,","
R21392	T27298	T27297	arg1Of	C,p3xFLAG-Tat
R21393	T27298	T27299	arg1Of	C,(
R21394	T27300	T27299	arg2Of	"22,25,27",(
R21395	T27301	T27299	arg3Of	),(
R21396	T27302	T27308	arg1Of	",",or
R21397	T27304	T27302	arg2Of	R,","
R21398	T27304	T27303	arg1Of	R,p3xFLAG-Tat
R21399	T27304	T27305	arg1Of	R,(
R21400	T27306	T27305	arg2Of	49–57,(
R21401	T27307	T27305	arg3Of	),(
R21402	T27308	T27294	arg2Of	or,with
R21403	T27310	T27308	arg2Of	vector,or
R21404	T27310	T27309	arg1Of	vector,empty
R21405	T27310	T27311	arg1Of	vector,(
R21406	T27312	T27311	arg2Of	10 µg,(
R21407	T27313	T27311	arg3Of	),(
R21408	T27318	T27315	arg2Of	interference,for
R21409	T27318	T27316	arg1Of	interference,p65
R21410	T27318	T27317	arg1Of	interference,RNA
R21411	T27320	T27321	arg1Of	cells,(
R21412	T27320	T27324	arg1Of	cells,were
R21413	T27320	T27325	arg2Of	cells,transfected
R21414	T27322	T27321	arg2Of	5 × 106,(
R21415	T27323	T27321	arg3Of	),(
R21416	T27325	T27314	arg2Of	transfected,;
R21417	T27325	T27315	arg1Of	transfected,for
R21418	T27325	T27319	arg1Of	transfected,","
R21419	T27325	T27324	arg2Of	transfected,were
R21420	T27325	T27326	arg1Of	transfected,with
R21421	T27327	T27328	arg1Of	p3xFLAG-Tat,(
R21422	T27327	T27331	arg1Of	p3xFLAG-Tat,and
R21423	T27329	T27328	arg2Of	10 µg,(
R21424	T27330	T27328	arg3Of	),(
R21425	T27331	T27334	arg1Of	and,or
R21426	T27333	T27331	arg2Of	p65,and
R21427	T27333	T27332	arg1Of	p65,siRNA
R21428	T27334	T27326	arg2Of	or,with
R21429	T27336	T27334	arg2Of	control,or
R21430	T27336	T27335	arg1Of	control,siRNA
R21431	T27336	T27337	arg1Of	control,(
R21432	T27338	T27337	arg2Of	200 pmol,(
R21433	T27339	T27337	arg3Of	),(
R21434	T27341	T27342	arg1Of	post-transfection,","
R21435	T27343	T27342	arg2Of	total,","
R21436	T27344	T27340	arg1Of	RNA,Twenty-four-hour
R21437	T27344	T27341	arg1Of	RNA,post-transfection
R21438	T27344	T27343	arg1Of	RNA,total
R21439	T27344	T27345	arg1Of	RNA,was
R21440	T27344	T27346	arg2Of	RNA,extracted
R21441	T27344	T27348	arg2Of	RNA,analysed
R21442	T27346	T27347	arg1Of	extracted,and
R21443	T27347	T27345	arg2Of	and,was
R21444	T27347	T27352	modOf	and,to
R21445	T27348	T27347	arg2Of	analysed,and
R21446	T27351	T27346	arg1Of	PCR,extracted
R21447	T27351	T27348	arg1Of	PCR,analysed
R21448	T27351	T27349	arg2Of	PCR,by
R21449	T27351	T27350	arg1Of	PCR,real-time
R21450	T27353	T27352	arg1Of	evaluate,to
R21451	T27355	T27354	arg1Of	expression,the
R21452	T27355	T27356	arg1Of	expression,of
R21453	T27355	T27415	arg1Of	expression,was
R21454	T27355	T27416	arg2Of	expression,performed
R21455	T27357	T27358	arg1Of	MIP-1α,(
R21456	T27357	T27361	arg1Of	MIP-1α,","
R21457	T27359	T27358	arg2Of	A,(
R21458	T27360	T27358	arg3Of	),(
R21459	T27361	T27366	arg1Of	",",","
R21460	T27362	T27361	arg2Of	CSF3,","
R21461	T27362	T27363	arg1Of	CSF3,(
R21462	T27364	T27363	arg2Of	B,(
R21463	T27365	T27363	arg3Of	),(
R21464	T27366	T27371	arg1Of	",",","
R21465	T27367	T27366	arg2Of	LTA,","
R21466	T27367	T27368	arg1Of	LTA,(
R21467	T27369	T27368	arg2Of	C,(
R21468	T27370	T27368	arg3Of	),(
R21469	T27371	T27356	arg2Of	",",of
R21470	T27372	T27373	arg1Of	NFKBIA,(
R21471	T27372	T27376	arg1Of	NFKBIA,","
R21472	T27374	T27373	arg2Of	D,(
R21473	T27375	T27373	arg3Of	),(
R21474	T27376	T27381	arg1Of	",",","
R21475	T27377	T27376	arg2Of	TLR2,","
R21476	T27377	T27378	arg1Of	TLR2,(
R21477	T27379	T27378	arg2Of	E,(
R21478	T27380	T27378	arg3Of	),(
R21479	T27381	T27386	arg1Of	",",","
R21480	T27382	T27381	arg2Of	GAPDH,","
R21481	T27382	T27383	arg1Of	GAPDH,(
R21482	T27384	T27383	arg2Of	F,(
R21483	T27385	T27383	arg3Of	),(
R21484	T27386	T27371	arg2Of	",",","
R21485	T27386	T27400	modOf	",",were
R21486	T27387	T27386	arg2Of	ACTB,","
R21487	T27387	T27388	arg1Of	ACTB,(
R21488	T27389	T27388	arg2Of	G,(
R21489	T27390	T27388	arg3Of	),(
R21490	T27393	T27392	arg2Of	H,(
R21491	T27394	T27392	arg3Of	),(
R21492	T27396	T27391	arg1Of	cells,genes.
R21493	T27396	T27392	arg1Of	cells,(
R21494	T27396	T27395	arg1Of	cells,HeLa
R21495	T27396	T27397	arg1Of	cells,(
R21496	T27396	T27400	arg1Of	cells,were
R21497	T27396	T27401	arg2Of	cells,transfected
R21498	T27398	T27397	arg2Of	5 × 106,(
R21499	T27399	T27397	arg3Of	),(
R21500	T27401	T27400	arg2Of	transfected,were
R21501	T27401	T27402	arg1Of	transfected,with
R21502	T27403	T27405	arg1Of	p3xFLAG-Tat,or
R21503	T27405	T27402	arg2Of	or,with
R21504	T27405	T27404	arg1Of	or,","
R21505	T27407	T27406	arg1Of	vector,empty
R21506	T27407	T27408	arg1Of	vector,(
R21507	T27407	T27411	arg1Of	vector,and
R21508	T27409	T27408	arg2Of	10 µg,(
R21509	T27410	T27408	arg3Of	),(
R21510	T27411	T27405	arg2Of	and,or
R21511	T27414	T27411	arg2Of	ChIP,and
R21512	T27414	T27412	arg1Of	ChIP,48 h
R21513	T27414	T27413	arg1Of	ChIP,later
R21514	T27416	T27353	arg2Of	performed,evaluate
R21515	T27416	T27415	arg2Of	performed,was
R21516	T27416	T27417	arg1Of	performed,with
R21517	T27419	T27417	arg2Of	antibody,with
R21518	T27419	T27418	arg1Of	antibody,anti-p65
R21519	T27421	T27420	arg1Of	PCR,Real-time
R21520	T27421	T27422	arg1Of	PCR,was
R21521	T27421	T27423	arg2Of	PCR,performed
R21522	T27423	T27422	arg2Of	performed,was
R21523	T27423	T27424	arg1Of	performed,with
R21524	T27423	T27464	arg1Of	performed,;
R21525	T27425	T27424	arg2Of	primers,with
R21526	T27425	T27426	arg1Of	primers,specific
R21527	T27425	T27439	modOf	primers,were
R21528	T27426	T27427	arg1Of	specific,for
R21529	T27430	T27427	arg2Of	promoters.,for
R21530	T27430	T27428	arg1Of	promoters.,the
R21531	T27430	T27429	arg2Of	promoters.,indicated
R21532	T27432	T27431	arg2Of	I,(
R21533	T27433	T27431	arg3Of	),(
R21534	T27435	T27431	arg1Of	cells,(
R21535	T27435	T27434	arg1Of	cells,HeLa
R21536	T27435	T27436	arg1Of	cells,(
R21537	T27435	T27439	arg1Of	cells,were
R21538	T27435	T27440	arg2Of	cells,transfected
R21539	T27437	T27436	arg2Of	5 × 106,(
R21540	T27438	T27436	arg3Of	),(
R21541	T27440	T27439	arg2Of	transfected,were
R21542	T27440	T27441	arg1Of	transfected,with
R21543	T27443	T27442	arg1Of	vector,empty
R21544	T27443	T27445	arg1Of	vector,or
R21545	T27445	T27444	arg1Of	or,","
R21546	T27445	T27458	arg1Of	or,or
R21547	T27446	T27445	arg2Of	p3xFLAG-Tat,or
R21548	T27446	T27447	arg1Of	p3xFLAG-Tat,(
R21549	T27446	T27450	arg1Of	p3xFLAG-Tat,in
R21550	T27448	T27447	arg2Of	10 µg,(
R21551	T27449	T27447	arg3Of	),(
R21552	T27451	T27452	arg1Of	presence,or
R21553	T27452	T27450	arg2Of	or,in
R21554	T27452	T27454	arg1Of	or,of
R21555	T27453	T27452	arg2Of	absence,or
R21556	T27456	T27454	arg2Of	p65,of
R21557	T27456	T27455	arg1Of	p65,siRNA
R21558	T27458	T27441	arg2Of	or,with
R21559	T27458	T27457	arg1Of	or,","
R21560	T27460	T27458	arg2Of	control,or
R21561	T27460	T27459	arg1Of	control,siRNA
R21562	T27460	T27461	arg1Of	control,(
R21563	T27462	T27461	arg2Of	200 pmol,(
R21564	T27463	T27461	arg3Of	),(
R21565	T27466	T27465	arg1Of	later,48 h
R21566	T27468	T27469	arg1Of	ChIP,was
R21567	T27468	T27470	arg2Of	ChIP,performed
R21568	T27470	T27464	arg2Of	performed,;
R21569	T27470	T27466	arg1Of	performed,later
R21570	T27470	T27467	arg1Of	performed,","
R21571	T27470	T27469	arg2Of	performed,was
R21572	T27470	T27471	arg1Of	performed,with
R21573	T27473	T27471	arg2Of	antibody,with
R21574	T27473	T27472	arg1Of	antibody,anti-FLAG
R21575	T27475	T27474	arg1Of	PCR,Real-time
R21576	T27475	T27476	arg1Of	PCR,was
R21577	T27475	T27477	arg2Of	PCR,performed
R21578	T27477	T27476	arg2Of	performed,was
R21579	T27477	T27478	arg1Of	performed,with
R21580	T27479	T27478	arg2Of	primers,with
R21581	T27479	T27480	arg1Of	primers,specific
R21582	T27480	T27481	arg1Of	specific,for
R21583	T27484	T27481	arg2Of	promoters.,for
R21584	T27484	T27482	arg1Of	promoters.,the
R21585	T27484	T27483	arg2Of	promoters.,indicated
R21586	T27484	T27485	arg1Of	promoters.,(
R21587	T27486	T27485	arg2Of	J,(
R21588	T27487	T27485	arg3Of	),(
R21589	T27489	T27488	arg1Of	cells,HeLa
R21590	T27489	T27490	arg1Of	cells,(
R21591	T27489	T27493	arg1Of	cells,were
R21592	T27489	T27494	arg2Of	cells,transfected
R21593	T27491	T27490	arg2Of	5 × 106,(
R21594	T27492	T27490	arg3Of	),(
R21595	T27494	T27476	modOf	transfected,was
R21596	T27494	T27493	arg2Of	transfected,were
R21597	T27494	T27495	arg1Of	transfected,with
R21598	T27494	T27516	arg1Of	transfected,;
R21599	T27497	T27496	arg1Of	vector,empty
R21600	T27497	T27498	arg1Of	vector,","
R21601	T27498	T27504	arg1Of	",",or
R21602	T27499	T27498	arg2Of	p3xFLAG-Tat,","
R21603	T27499	T27500	arg1Of	p3xFLAG-Tat,(
R21604	T27501	T27500	arg2Of	10 µg,(
R21605	T27502	T27500	arg3Of	),(
R21606	T27504	T27503	arg1Of	or,","
R21607	T27504	T27510	arg1Of	or,or
R21608	T27506	T27505	arg1Of	vector,empty
R21609	T27506	T27507	arg1Of	vector,plus
R21610	T27507	T27504	arg2Of	plus,or
R21611	T27509	T27507	arg2Of	IκB-α,plus
R21612	T27509	T27508	arg1Of	IκB-α,siRNA
R21613	T27510	T27495	arg2Of	or,with
R21614	T27512	T27510	arg2Of	control,or
R21615	T27512	T27511	arg1Of	control,siRNA
R21616	T27512	T27513	arg1Of	control,(
R21617	T27514	T27513	arg2Of	200 pmol,(
R21618	T27515	T27513	arg3Of	),(
R21619	T27518	T27517	arg1Of	later,48 h
R21620	T27520	T27521	arg1Of	ChIP,was
R21621	T27520	T27522	arg2Of	ChIP,performed
R21622	T27522	T27516	arg2Of	performed,;
R21623	T27522	T27518	arg1Of	performed,later
R21624	T27522	T27519	arg1Of	performed,","
R21625	T27522	T27521	arg2Of	performed,was
R21626	T27522	T27523	arg1Of	performed,with
R21627	T27525	T27523	arg2Of	antibody,with
R21628	T27525	T27524	arg1Of	antibody,anti-IκB-α
R21629	T27527	T27526	arg1Of	PCR,Real-time
R21630	T27527	T27528	arg1Of	PCR,was
R21631	T27527	T27529	arg2Of	PCR,performed
R21632	T27529	T27528	arg2Of	performed,was
R21633	T27529	T27530	arg1Of	performed,with
R21634	T27531	T27530	arg2Of	primers,with
R21635	T27531	T27532	arg1Of	primers,specific
R21636	T27532	T27533	arg1Of	specific,for
R21637	T27536	T27533	arg2Of	promoters,for
R21638	T27536	T27534	arg1Of	promoters,the
R21639	T27536	T27535	arg1Of	promoters,indicated
R21640	T27537	T27538	arg1Of	Values,(
R21641	T27537	T27543	arg1Of	Values,are
R21642	T27537	T27544	arg2Of	Values,shown
R21643	T27539	T27538	arg2Of	mean ± SE,(
R21644	T27539	T27540	arg1Of	mean ± SE,","
R21645	T27541	T27540	arg2Of	n = 3,","
R21646	T27542	T27538	arg3Of	),(
R21647	T27544	T27543	arg2Of	shown,are
R21648	T27546	T27545	arg1Of	asterisks,The
R21649	T27546	T27547	arg1Of	asterisks,indicate
R21650	T27547	T27559	arg1Of	indicate,according
R21651	T27549	T27548	arg1Of	significant,statistically
R21652	T27550	T27547	arg2Of	differences,indicate
R21653	T27550	T27549	arg1Of	differences,significant
R21654	T27550	T27551	arg1Of	differences,compared
R21655	T27552	T27551	arg2Of	to,compared
R21656	T27554	T27552	arg2Of	control,to
R21657	T27554	T27553	arg1Of	control,the
R21658	T27554	T27555	arg1Of	control,(
R21659	T27557	T27555	arg2Of	vector,(
R21660	T27557	T27556	arg1Of	vector,empty
R21661	T27558	T27555	arg3Of	),(
R21662	T27560	T27559	arg2Of	to,according
R21663	T27562	T27561	arg1Of	Student,the
R21664	T27562	T27563	arg2Of	Student,'s
R21665	T27564	T27560	arg2Of	t-test,to
R21666	T27564	T27563	arg1Of	t-test,'s
R21667	T27564	T27565	arg1Of	t-test,(
R21668	T27566	T27565	arg2Of	P ,(
R21669	T27566	T27567	arg1Of	P ,<
R21670	T27567	T27568	arg1Of	<, 0.05
R21671	T27569	T27565	arg3Of	),(
R21358	T27266	T27267	arg1Of	Tat,activates
R21359	T27266	T27275	arg1Of	Tat,occupying
R21361	T27267	T27274	arg1Of	activates,by
R21362	T27270	T27267	arg2Of	expression,activates
R21363	T27270	T27268	arg1Of	expression,the
R21364	T27270	T27269	arg1Of	expression,p65-dependent
R21365	T27270	T27271	arg1Of	expression,of
R21366	T27273	T27271	arg2Of	genes,of
R21367	T27273	T27272	arg1Of	genes,NF-κB-responsive
R21372	T27279	T27274	arg2Of	and,by

bionlp-st-ge-2016-coref

Id	Subject	Object	Predicate	Lexical cue
T15820	526-537	Anaphor	denotes	the mutants
T15821	538-554	Antecedent	denotes	Tat C(22,25,27)A
T15822	559-572	Antecedent	denotes	Tat R(49–57)A
T15823	1201-1218	Anaphor	denotes	the viral protein
T15824	1153-1156	Antecedent	denotes	Tat
T15825	2841-2846	Anaphor	denotes	which
T15826	2833-2839	Antecedent	denotes	MIP-1α
T15827	4060-4062	Anaphor	denotes	it
T15828	3983-3986	Antecedent	denotes	Tat
T15829	4408-4410	Anaphor	denotes	it
T15830	4311-4314	Antecedent	denotes	Tat
T15831	4583-4590	Anaphor	denotes	binding
T15832	4488-4493	Antecedent	denotes	bound
R12781	T15820	T15821	boundBy	the mutants,"Tat C(22,25,27)A"
R12782	T15820	T15822	boundBy	the mutants,Tat R(49–57)A
R12783	T15823	T15824	boundBy	the viral protein,Tat
R12784	T15825	T15826	boundBy	which,MIP-1α
R12785	T15827	T15828	boundBy	it,Tat
R12786	T15829	T15830	boundBy	it,Tat
R12787	T15831	T15832	boundBy	binding,bound

bionlp-st-ge-2016-spacy-parsed

Id	Subject	Object	Predicate	Lexical cue
T15998	0-3	NNP	denotes	Tat
T15999	4-13	VBZ	denotes	activates
T16000	14-17	DT	denotes	the
T16001	18-31	JJ	denotes	p65-dependent
T16002	32-42	NN	denotes	expression
T16003	43-45	IN	denotes	of
T16004	46-62	JJ	denotes	NF-κB-responsive
T16005	63-68	NNS	denotes	genes
T16006	68-69	,	denotes	,
T16007	70-78	VBZ	denotes	occupies
T16008	79-82	DT	denotes	the
T16009	83-88	JJ	denotes	NF-κB
T16010	89-98	NNS	denotes	enhancers
T16011	99-102	CC	denotes	and
T16012	103-111	VBZ	denotes	promotes
T16013	112-115	DT	denotes	the
T16014	116-119	CD	denotes	p65
T16015	120-131	NN	denotes	recruitment
T16016	132-136	IN	denotes	with
T16017	137-142	JJ	denotes	IκB-α
T16018	143-155	NN	denotes	displacement
T16019	156-158	PRP	denotes	We
T16020	159-167	VBD	denotes	analysed
T16021	168-171	DT	denotes	the
T16022	172-178	NN	denotes	action
T16023	179-181	IN	denotes	of
T16024	182-185	NNP	denotes	Tat
T16025	186-188	IN	denotes	on
T16026	189-192	DT	denotes	the
T16027	193-203	NN	denotes	expression
T16028	204-206	IN	denotes	of
T16029	207-223	JJ	denotes	NF-κB-responsive
T16030	224-229	NNS	denotes	genes
T16031	230-232	IN	denotes	in
T16032	233-237	NN	denotes	vivo
T16033	237-238	.	denotes	.
T16034	239-241	TO	denotes	To
T16035	242-246	DT	denotes	this
T16036	247-250	NN	denotes	end
T16037	250-251	,	denotes	,
T16038	252-256	NNP	denotes	HeLa
T16039	257-262	NNS	denotes	cells
T16040	263-267	VBD	denotes	were
T16041	268-279	VBN	denotes	transfected
T16042	280-284	IN	denotes	with
T16043	285-293	NNP	denotes	FLAG-Tat
T16044	293-294	,	denotes	,
T16045	295-303	NNP	denotes	FLAG-Tat
T16046	304-305	NNP	denotes	C
T16047	305-306	-LRB-	denotes	(
T16048	306-314	CD	denotes	22,25,27
T16049	314-315	-RRB-	denotes	)
T16050	315-316	DT	denotes	A
T16051	317-319	CC	denotes	or
T16052	320-328	JJ	denotes	FLAG-Tat
T16053	329-330	NN	denotes	R
T16054	330-331	-LRB-	denotes	(
T16055	331-333	CD	denotes	49
T16056	334-336	CD	denotes	57
T16057	336-337	-RRB-	denotes	)
T16058	337-338	DT	denotes	A
T16059	338-339	,	denotes	,
T16060	340-343	CC	denotes	and
T16061	344-346	CD	denotes	48
T16062	347-348	NN	denotes	h
T16063	349-354	RB	denotes	later
T16064	355-358	DT	denotes	the
T16065	359-369	NN	denotes	expression
T16066	370-372	IN	denotes	of
T16067	373-374	DT	denotes	a
T16068	375-381	NN	denotes	number
T16069	382-384	IN	denotes	of
T16070	385-400	JJ	denotes	NF-κB-dependent
T16071	401-406	NNS	denotes	genes
T16072	407-410	VBD	denotes	was
T16073	411-419	VBN	denotes	analysed
T16074	420-422	IN	denotes	by
T16075	423-432	JJ	denotes	real-time
T16076	433-436	NNP	denotes	PCR
T16077	436-437	.	denotes	.
T16078	438-441	NNP	denotes	Tat
T16079	442-455	RB	denotes	significantly
T16080	456-465	VBD	denotes	increased
T16081	466-469	DT	denotes	the
T16082	470-480	NN	denotes	expression
T16083	481-483	IN	denotes	of
T16084	484-490	NNP	denotes	MIP-1α
T16085	490-491	,	denotes	,
T16086	492-496	NNP	denotes	CSF3
T16087	496-497	,	denotes	,
T16088	498-501	NNP	denotes	LTA
T16089	501-502	,	denotes	,
T16090	503-509	NNP	denotes	NFKBIA
T16091	510-513	CC	denotes	and
T16092	514-518	NNP	denotes	TLR2
T16093	518-519	,	denotes	,
T16094	520-525	IN	denotes	while
T16095	526-529	DT	denotes	the
T16096	530-537	NNS	denotes	mutants
T16097	538-541	NNP	denotes	Tat
T16098	542-543	NNP	denotes	C
T16099	543-544	-LRB-	denotes	(
T16100	544-552	CD	denotes	22,25,27
T16101	552-553	-RRB-	denotes	)
T16102	553-554	DT	denotes	A
T16103	555-558	CC	denotes	and
T16104	559-562	NNP	denotes	Tat
T16105	563-564	NNP	denotes	R
T16106	564-565	-LRB-	denotes	(
T16107	565-567	CD	denotes	49
T16108	568-570	CD	denotes	57
T16109	570-571	-RRB-	denotes	)
T16110	571-572	DT	denotes	A
T16111	573-577	VBD	denotes	were
T16112	578-589	JJ	denotes	ineffective
T16113	590-591	-LRB-	denotes	(
T16114	591-597	NN	denotes	Figure
T16115	598-600	CD	denotes	5A
T16116	601-602	NNP	denotes	E
T16117	602-603	-RRB-	denotes	)
T16118	603-604	.	denotes	.
T16119	605-608	DT	denotes	The
T16120	609-622	JJ	denotes	Tat-dependent
T16121	623-638	NN	denotes	transactivation
T16122	639-641	IN	denotes	of
T16123	642-645	DT	denotes	the
T16124	646-661	JJ	denotes	NF-κB-dependent
T16125	662-667	NNS	denotes	genes
T16126	668-671	VBD	denotes	was
T16127	672-681	VBN	denotes	abolished
T16128	682-686	WRB	denotes	when
T16129	687-692	NNS	denotes	cells
T16130	693-697	VBD	denotes	were
T16131	698-709	VBN	denotes	transfected
T16132	710-714	IN	denotes	with
T16133	715-720	NNP	denotes	siRNA
T16134	721-724	CD	denotes	p65
T16135	724-725	,	denotes	,
T16136	726-736	VBG	denotes	indicating
T16137	737-741	IN	denotes	that
T16138	742-745	DT	denotes	the
T16139	746-749	NNP	denotes	Tat
T16140	750-765	JJ	denotes	transcriptional
T16141	766-776	NN	denotes	activation
T16142	777-780	VBD	denotes	was
T16143	781-789	VBN	denotes	mediated
T16144	790-792	IN	denotes	by
T16145	793-796	NNS	denotes	p65
T16146	797-798	-LRB-	denotes	(
T16147	798-804	NN	denotes	Figure
T16148	805-807	CD	denotes	5A
T16149	808-809	NNP	denotes	E
T16150	809-810	-RRB-	denotes	)
T16151	810-811	.	denotes	.
T16152	812-823	RB	denotes	Differently
T16153	823-824	,	denotes	,
T16154	825-828	DT	denotes	the
T16155	829-839	NN	denotes	expression
T16156	840-842	IN	denotes	of
T16157	843-846	DT	denotes	the
T16158	847-864	JJ	denotes	NF-κB-independent
T16159	865-870	NNS	denotes	genes
T16160	871-876	NNP	denotes	GAPDH
T16161	877-880	CC	denotes	and
T16162	881-885	NNP	denotes	ACTB
T16163	886-889	VBD	denotes	was
T16164	890-900	JJ	denotes	unaffected
T16165	901-903	IN	denotes	by
T16166	904-913	JJ	denotes	wild-type
T16167	914-917	CC	denotes	and
T16168	918-921	NNP	denotes	Tat
T16169	922-929	NNS	denotes	mutants
T16170	930-931	-LRB-	denotes	(
T16171	931-937	NN	denotes	Figure
T16172	938-940	CD	denotes	5F
T16173	941-944	CC	denotes	and
T16174	945-946	NNP	denotes	G
T16175	946-947	-RRB-	denotes	)
T16176	947-948	.	denotes	.
T16177	949-954	DT	denotes	These
T16178	955-962	NNS	denotes	results
T16179	963-967	VBD	denotes	were
T16180	968-978	JJ	denotes	consistent
T16181	979-983	IN	denotes	with
T16182	984-987	DT	denotes	the
T16183	988-999	NN	denotes	requirement
T16184	1000-1002	IN	denotes	of
T16185	1003-1007	DT	denotes	both
T16186	1008-1011	DT	denotes	the
T16187	1012-1025	NN	denotes	cysteine-rich
T16188	1026-1029	CC	denotes	and
T16189	1030-1043	JJ	denotes	arginine-rich
T16190	1044-1051	NNS	denotes	domains
T16191	1052-1054	IN	denotes	of
T16192	1055-1058	NNP	denotes	Tat
T16193	1059-1061	TO	denotes	to
T16194	1062-1069	VB	denotes	enhance
T16195	1070-1073	DT	denotes	the
T16196	1074-1079	NN	denotes	NF-κB
T16197	1080-1088	NN	denotes	activity
T16198	1088-1089	,	denotes	,
T16199	1090-1100	VBG	denotes	suggesting
T16200	1101-1105	IN	denotes	that
T16201	1106-1109	DT	denotes	the
T16202	1110-1123	NN	denotes	up-regulation
T16203	1124-1126	IN	denotes	of
T16204	1127-1143	JJ	denotes	NF-κB-responsive
T16205	1144-1149	NNS	denotes	genes
T16206	1150-1152	IN	denotes	by
T16207	1153-1156	NNP	denotes	Tat
T16208	1157-1162	MD	denotes	might
T16209	1163-1168	VB	denotes	occur
T16210	1169-1176	IN	denotes	through
T16211	1177-1185	JJ	denotes	physical
T16212	1186-1197	NN	denotes	interaction
T16213	1198-1200	IN	denotes	of
T16214	1201-1204	DT	denotes	the
T16215	1205-1210	JJ	denotes	viral
T16216	1211-1218	NN	denotes	protein
T16217	1219-1223	IN	denotes	with
T16218	1224-1227	CD	denotes	p65
T16219	1228-1231	CC	denotes	and
T16220	1232-1237	NNP	denotes	IκB-α
T16221	1237-1238	.	denotes	.
T16222	2833-2839	NN	denotes	MIP-1α
T16223	2839-2840	,	denotes	,
T16224	2841-2846	WDT	denotes	which
T16225	2847-2850	VBD	denotes	was
T16226	2851-2854	DT	denotes	the
T16227	2855-2861	RB	denotes	mostly
T16228	2862-2871	VBN	denotes	activated
T16229	2872-2876	NN	denotes	gene
T16230	2877-2879	IN	denotes	by
T16231	2880-2883	NNP	denotes	Tat
T16232	2883-2884	,	denotes	,
T16233	2885-2892	VBZ	denotes	encodes
T16234	2893-2896	IN	denotes	for
T16235	2897-2898	DT	denotes	a
T16236	2899-2908	NN	denotes	chemokine
T16237	2909-2913	WDT	denotes	that
T16238	2914-2922	VBZ	denotes	promotes
T16239	2923-2926	DT	denotes	the
T16240	2927-2938	NN	denotes	recruitment
T16241	2939-2941	IN	denotes	of
T16242	2942-2958	JJ	denotes	pro-inflammatory
T16243	2959-2964	NNS	denotes	cells
T16244	2965-2966	-LRB-	denotes	(
T16245	2966-2968	CD	denotes	56
T16246	2968-2969	-RRB-	denotes	)
T16247	2969-2970	.	denotes	.
T16248	2971-2983	RB	denotes	Consistently
T16249	2984-2988	IN	denotes	with
T16250	2989-2992	PRP$	denotes	our
T16251	2993-3001	NNS	denotes	findings
T16252	3001-3002	,	denotes	,
T16253	3003-3009	JJ	denotes	MIP-1α
T16254	3010-3020	NN	denotes	expression
T16255	3021-3024	VBD	denotes	was
T16256	3025-3034	VBN	denotes	increased
T16257	3035-3037	IN	denotes	in
T16258	3038-3043	JJ	denotes	glial
T16259	3044-3049	NNS	denotes	cells
T16260	3050-3053	CC	denotes	and
T16261	3054-3059	JJ	denotes	lymph
T16262	3060-3065	NNS	denotes	nodes
T16263	3066-3068	IN	denotes	of
T16264	3069-3073	NNP	denotes	AIDS
T16265	3074-3082	NNS	denotes	patients
T16266	3083-3084	-LRB-	denotes	(
T16267	3084-3089	CD	denotes	57,58
T16268	3089-3090	-RRB-	denotes	)
T16269	3090-3091	:	denotes	;
T16270	3092-3100	RB	denotes	moreover
T16271	3100-3101	,	denotes	,
T16272	3102-3108	JJ	denotes	MIP-1α
T16273	3109-3119	NN	denotes	production
T16274	3120-3123	VBD	denotes	was
T16275	3124-3131	VBN	denotes	induced
T16276	3132-3134	IN	denotes	by
T16277	3135-3140	NNP	denotes	HIV-1
T16278	3141-3150	NN	denotes	infection
T16279	3151-3152	-LRB-	denotes	(
T16280	3152-3157	CD	denotes	59,60
T16281	3157-3158	-RRB-	denotes	)
T16282	3159-3162	CC	denotes	and
T16283	3163-3166	NNP	denotes	Tat
T16284	3167-3174	NN	denotes	protein
T16285	3175-3176	-LRB-	denotes	(
T16286	3176-3184	CD	denotes	57,61,62
T16287	3184-3185	-RRB-	denotes	)
T16288	3185-3186	.	denotes	.
T16289	3187-3190	DT	denotes	The
T16290	3191-3206	JJ	denotes	transcriptional
T16291	3207-3217	NN	denotes	regulation
T16292	3218-3220	IN	denotes	of
T16293	3221-3227	NN	denotes	MIP-1α
T16294	3228-3231	VBZ	denotes	has
T16295	3232-3236	VBN	denotes	been
T16296	3237-3243	RB	denotes	poorly
T16297	3244-3257	VBN	denotes	characterized
T16298	3257-3258	.	denotes	.
T16299	3259-3271	JJ	denotes	Jaspar-based
T16300	3272-3280	NN	denotes	analysis
T16301	3281-3282	-LRB-	denotes	(
T16302	3282-3308	NN	denotes	http://jaspar.genereg.net/
T16303	3308-3309	-RRB-	denotes	)
T16304	3310-3319	VBD	denotes	predicted
T16305	3320-3325	CD	denotes	three
T16306	3326-3334	JJ	denotes	putative
T16307	3335-3340	NN	denotes	NF-κB
T16308	3341-3350	NNS	denotes	enhancers
T16309	3351-3353	IN	denotes	in
T16310	3354-3357	DT	denotes	the
T16311	3358-3366	JJ	denotes	proximal
T16312	3367-3375	NN	denotes	promoter
T16313	3376-3382	NN	denotes	region
T16314	3383-3385	IN	denotes	of
T16315	3386-3389	DT	denotes	the
T16316	3390-3396	JJ	denotes	MIP-1α
T16317	3397-3401	NN	denotes	gene
T16318	3401-3402	:	denotes	:
T16319	3403-3409	NN	denotes	NF-κB1
T16320	3409-3410	,	denotes	,
T16321	3411-3412	VBP	denotes	−
T16322	3412-3416	CD	denotes	1023
T16323	3416-3417	CD	denotes	/
T16324	3417-3418	NN	denotes	−
T16325	3418-3422	CD	denotes	1014
T16326	3423-3434	NNS	denotes	nucleotides
T16327	3434-3435	:	denotes	;
T16328	3436-3442	NNP	denotes	NF-κB2
T16329	3442-3443	,	denotes	,
T16330	3444-3445	CD	denotes	−
T16331	3445-3448	CD	denotes	661
T16332	3448-3449	NN	denotes	/
T16333	3449-3450	NN	denotes	−
T16334	3450-3453	CD	denotes	652
T16335	3454-3465	NNS	denotes	nucleotides
T16336	3465-3466	:	denotes	;
T16337	3467-3473	NNP	denotes	NF-κB3
T16338	3473-3474	,	denotes	,
T16339	3475-3479	CD	denotes	+370
T16340	3479-3480	NN	denotes	/
T16341	3480-3484	CD	denotes	+379
T16342	3485-3496	NNS	denotes	nucleotides
T16343	3497-3498	-LRB-	denotes	(
T16344	3498-3511	NNP	denotes	Supplementary
T16345	3512-3518	NNP	denotes	Figure
T16346	3519-3522	NNP	denotes	S3A
T16347	3522-3523	-RRB-	denotes	)
T16348	3523-3524	.	denotes	.
T16349	3525-3527	TO	denotes	To
T16350	3528-3536	VB	denotes	validate
T16351	3537-3540	DT	denotes	the
T16352	3541-3550	VBN	denotes	predicted
T16353	3551-3556	NN	denotes	NF-κB
T16354	3557-3564	JJ	denotes	binding
T16355	3565-3570	NNS	denotes	sites
T16356	3571-3573	IN	denotes	of
T16357	3574-3577	DT	denotes	the
T16358	3578-3584	JJ	denotes	MIP-1α
T16359	3585-3593	NN	denotes	promoter
T16360	3593-3594	,	denotes	,
T16361	3595-3597	PRP	denotes	we
T16362	3598-3608	VBD	denotes	stimulated
T16363	3609-3613	NNP	denotes	HeLa
T16364	3614-3619	NNS	denotes	cells
T16365	3620-3624	IN	denotes	with
T16366	3625-3630	NNP	denotes	TNF-α
T16367	3630-3631	,	denotes	,
T16368	3632-3633	DT	denotes	a
T16369	3634-3644	JJ	denotes	well-known
T16370	3645-3650	NN	denotes	NF-κB
T16371	3651-3658	NN	denotes	inducer
T16372	3658-3659	,	denotes	,
T16373	3660-3663	CC	denotes	and
T16374	3664-3672	VBD	denotes	measured
T16375	3673-3676	DT	denotes	the
T16376	3677-3687	NN	denotes	expression
T16377	3688-3694	NNS	denotes	levels
T16378	3695-3697	IN	denotes	of
T16379	3698-3704	NN	denotes	MIP-1α
T16380	3705-3707	IN	denotes	by
T16381	3708-3717	JJ	denotes	real-time
T16382	3718-3721	NNP	denotes	PCR
T16383	3721-3722	,	denotes	,
T16384	3723-3726	CC	denotes	and
T16385	3727-3730	DT	denotes	the
T16386	3731-3734	NNS	denotes	p65
T16387	3735-3744	NN	denotes	occupancy
T16388	3745-3747	IN	denotes	of
T16389	3748-3751	DT	denotes	the
T16390	3752-3757	NNP	denotes	NF-κB
T16391	3758-3763	NNS	denotes	sites
T16392	3764-3766	IN	denotes	by
T16393	3767-3771	NNP	denotes	ChIP
T16394	3771-3772	.	denotes	.
T16395	3773-3778	JJ	denotes	TNF-α
T16396	3779-3788	VBN	denotes	activated
T16397	3789-3792	DT	denotes	the
T16398	3793-3803	NN	denotes	expression
T16399	3804-3806	IN	denotes	of
T16400	3807-3813	NN	denotes	MIP-1α
T16401	3814-3817	CC	denotes	and
T16402	3818-3825	VBD	denotes	induced
T16403	3826-3829	DT	denotes	the
T16404	3830-3833	CD	denotes	p65
T16405	3834-3845	NN	denotes	recruitment
T16406	3846-3848	TO	denotes	to
T16407	3849-3852	DT	denotes	the
T16408	3853-3859	JJ	denotes	NF-κB1
T16409	3860-3864	NN	denotes	site
T16410	3865-3867	IN	denotes	of
T16411	3868-3874	NN	denotes	MIP-1α
T16412	3875-3882	IN	denotes	without
T16413	3883-3892	VBG	denotes	affecting
T16414	3893-3896	DT	denotes	the
T16415	3897-3906	NN	denotes	occupancy
T16416	3907-3909	IN	denotes	of
T16417	3910-3913	DT	denotes	the
T16418	3914-3922	JJ	denotes	putative
T16419	3923-3929	NN	denotes	NF-κB2
T16420	3930-3933	CC	denotes	and
T16421	3934-3940	JJ	denotes	NF-κB3
T16422	3941-3946	NNS	denotes	sites
T16423	3947-3948	-LRB-	denotes	(
T16424	3948-3961	NNP	denotes	Supplementary
T16425	3962-3968	NNP	denotes	Figure
T16426	3969-3972	NNP	denotes	S3B
T16427	3973-3976	CC	denotes	and
T16428	3977-3980	NNP	denotes	S3C
T16429	3980-3981	-RRB-	denotes	)
T16430	3981-3982	.	denotes	.
T16431	3983-3986	NNP	denotes	Tat
T16432	3987-3991	RB	denotes	also
T16433	3992-4000	VBD	denotes	promoted
T16434	4001-4004	DT	denotes	the
T16435	4005-4016	NN	denotes	recruitment
T16436	4017-4019	IN	denotes	of
T16437	4020-4023	CD	denotes	p65
T16438	4024-4026	TO	denotes	to
T16439	4027-4030	DT	denotes	the
T16440	4031-4037	JJ	denotes	NF-κB1
T16441	4038-4042	NN	denotes	site
T16442	4043-4045	IN	denotes	of
T16443	4046-4052	NNP	denotes	MIP-1α
T16444	4052-4053	,	denotes	,
T16445	4054-4059	IN	denotes	while
T16446	4060-4062	PRP	denotes	it
T16447	4063-4066	VBD	denotes	did
T16448	4067-4070	RB	denotes	not
T16449	4071-4077	VB	denotes	affect
T16450	4078-4081	DT	denotes	the
T16451	4082-4090	JJ	denotes	putative
T16452	4091-4097	NN	denotes	NF-κB2
T16453	4098-4101	CC	denotes	and
T16454	4102-4108	JJ	denotes	NF-κB3
T16455	4109-4114	NNS	denotes	sites
T16456	4115-4116	-LRB-	denotes	(
T16457	4116-4129	NNP	denotes	Supplementary
T16458	4130-4136	NNP	denotes	Figure
T16459	4137-4140	NNP	denotes	S3D
T16460	4140-4141	-RRB-	denotes	)
T16461	4141-4142	.	denotes	.
T16462	4143-4153	RB	denotes	Altogether
T16463	4154-4159	DT	denotes	these
T16464	4160-4167	NNS	denotes	results
T16465	4168-4177	VBD	denotes	indicated
T16466	4178-4182	IN	denotes	that
T16467	4183-4186	DT	denotes	the
T16468	4187-4193	JJ	denotes	NF-κB1
T16469	4194-4198	NN	denotes	site
T16470	4199-4202	VBD	denotes	was
T16471	4203-4206	DT	denotes	the
T16472	4207-4211	JJ	denotes	only
T16473	4212-4221	JJ	denotes	effective
T16474	4222-4227	NN	denotes	NF-κB
T16475	4228-4236	NN	denotes	enhancer
T16476	4237-4239	IN	denotes	of
T16477	4240-4243	DT	denotes	the
T16478	4244-4250	JJ	denotes	MIP-1α
T16479	4251-4259	NN	denotes	promoter
T16480	4260-4262	IN	denotes	in
T16481	4263-4271	NN	denotes	response
T16482	4272-4274	TO	denotes	to
T16483	4275-4280	NNP	denotes	TNF-α
T16484	4281-4284	CC	denotes	and
T16485	4285-4288	NNP	denotes	Tat
T16486	4288-4289	.	denotes	.
T16487	4290-4299	RB	denotes	Similarly
T16488	4300-4302	TO	denotes	to
T16489	4303-4309	NNP	denotes	MIP-1α
T16490	4309-4310	,	denotes	,
T16491	4311-4314	NNP	denotes	Tat
T16492	4315-4324	VBD	denotes	increased
T16493	4325-4328	DT	denotes	the
T16494	4329-4340	NN	denotes	recruitment
T16495	4341-4343	IN	denotes	of
T16496	4344-4347	CD	denotes	p65
T16497	4348-4350	TO	denotes	to
T16498	4351-4354	DT	denotes	the
T16499	4355-4360	JJ	denotes	NF-κB
T16500	4361-4370	NNS	denotes	enhancers
T16501	4371-4373	IN	denotes	of
T16502	4374-4378	NNP	denotes	CSF3
T16503	4378-4379	,	denotes	,
T16504	4380-4383	NNP	denotes	LTA
T16505	4383-4384	,	denotes	,
T16506	4385-4391	NNP	denotes	NFKBIA
T16507	4392-4395	CC	denotes	and
T16508	4396-4400	NNP	denotes	TLR2
T16509	4400-4401	,	denotes	,
T16510	4402-4407	IN	denotes	while
T16511	4408-4410	PRP	denotes	it
T16512	4411-4414	VBD	denotes	was
T16513	4415-4426	JJ	denotes	ineffective
T16514	4427-4429	IN	denotes	at
T16515	4430-4433	DT	denotes	the
T16516	4434-4443	NNS	denotes	promoters
T16517	4444-4446	IN	denotes	of
T16518	4447-4452	NNP	denotes	GAPDH
T16519	4453-4456	CC	denotes	and
T16520	4457-4461	NNP	denotes	ACTB
T16521	4462-4463	-LRB-	denotes	(
T16522	4463-4469	NNP	denotes	Figure
T16523	4470-4472	NNP	denotes	5H
T16524	4472-4473	-RRB-	denotes	)
T16525	4473-4474	.	denotes	.
T16526	4475-4477	IN	denotes	By
T16527	4478-4482	NNP	denotes	ChIP
T16528	4482-4483	,	denotes	,
T16529	4484-4487	NNP	denotes	Tat
T16530	4488-4493	VBD	denotes	bound
T16531	4494-4496	TO	denotes	to
T16532	4497-4500	DT	denotes	the
T16533	4501-4517	JJ	denotes	NF-κB-responsive
T16534	4518-4527	NNS	denotes	promoters
T16535	4527-4528	,	denotes	,
T16536	4529-4532	CC	denotes	and
T16537	4533-4536	RB	denotes	not
T16538	4537-4539	TO	denotes	to
T16539	4540-4543	DT	denotes	the
T16540	4544-4549	NNP	denotes	GAPDH
T16541	4922-4931	VBD	denotes	displaced
T16542	4550-4553	CC	denotes	and
T16543	4554-4558	NNP	denotes	ACTB
T16544	4559-4568	NNS	denotes	promoters
T16545	4568-4569	,	denotes	,
T16546	4570-4574	IN	denotes	with
T16547	4575-4579	NN	denotes	loss
T16548	4580-4582	IN	denotes	of
T16549	4583-4590	JJ	denotes	binding
T16550	4591-4600	VBG	denotes	following
T16551	4601-4604	CD	denotes	p65
T16552	4605-4608	NNP	denotes	RNA
T16553	4609-4621	NN	denotes	interference
T16554	4622-4623	-LRB-	denotes	(
T16555	4623-4629	NNP	denotes	Figure
T16556	4630-4632	NNP	denotes	5I
T16557	4632-4633	-RRB-	denotes	)
T16558	4633-4634	,	denotes	,
T16559	4635-4645	VBG	denotes	suggesting
T16560	4646-4650	IN	denotes	that
T16561	4651-4654	NNP	denotes	Tat
T16562	4655-4664	NN	denotes	occupancy
T16563	4665-4673	VBD	denotes	occurred
T16564	4674-4677	IN	denotes	via
T16565	4678-4681	CD	denotes	p65
T16566	4682-4693	NN	denotes	interaction
T16567	4693-4694	.	denotes	.
T16568	4695-4697	IN	denotes	As
T16569	4698-4708	JJ	denotes	additional
T16570	4709-4717	NNS	denotes	findings
T16571	4717-4718	,	denotes	,
T16572	4719-4724	NNP	denotes	IκB-α
T16573	4725-4728	VBD	denotes	was
T16574	4729-4757	VBN	denotes	chromatin-immunoprecipitated
T16575	4758-4760	IN	denotes	at
T16576	4761-4764	DT	denotes	the
T16577	4765-4770	JJ	denotes	NF-κB
T16578	4771-4780	NNS	denotes	enhancers
T16579	4781-4783	IN	denotes	in
T16580	4784-4791	NN	denotes	absence
T16581	4792-4794	IN	denotes	of
T16582	4795-4798	NNP	denotes	Tat
T16583	4798-4799	,	denotes	,
T16584	4800-4803	CC	denotes	and
T16585	4804-4806	PRP	denotes	it
T16586	4807-4810	VBD	denotes	was
T16587	4811-4824	RB	denotes	significantly
T16588	4825-4832	VBN	denotes	removed
T16589	4833-4835	IN	denotes	in
T16590	4836-4844	NN	denotes	presence
T16591	4845-4847	IN	denotes	of
T16592	4848-4851	NNP	denotes	Tat
T16593	4851-4852	,	denotes	,
T16594	4853-4855	CC	denotes	or
T16595	4856-4865	VBG	denotes	following
T16596	4866-4871	NNP	denotes	IκB-α
T16597	4872-4875	NNP	denotes	RNA
T16598	4876-4888	NN	denotes	interference
T16599	4889-4890	-LRB-	denotes	(
T16600	4890-4896	NN	denotes	Figure
T16601	4897-4899	CD	denotes	5J
T16602	4899-4900	-RRB-	denotes	)
T16603	4900-4901	,	denotes	,
T16604	4902-4912	VBG	denotes	indicating
T16605	4913-4917	IN	denotes	that
T16606	4918-4921	NNP	denotes	Tat
T16607	4932-4937	NNP	denotes	IκB-α
T16608	4938-4942	IN	denotes	from
T16609	4943-4952	NNS	denotes	promoters
T16610	4952-4953	.	denotes	.
T27629	1249-1252	NNP	denotes	Tat
T27630	1253-1262	VBZ	denotes	activates
T27631	1263-1266	DT	denotes	the
T27632	1267-1280	JJ	denotes	p65-dependent
T27633	1281-1291	NN	denotes	expression
T27634	1292-1294	IN	denotes	of
T27635	1295-1311	JJ	denotes	NF-κB-responsive
T27636	1312-1317	NNS	denotes	genes
T27637	1318-1320	IN	denotes	by
T27638	1321-1330	VBG	denotes	occupying
T27639	1331-1334	DT	denotes	the
T27640	1335-1340	JJ	denotes	NF-κB
T27641	1341-1350	NNS	denotes	enhancers
T27642	1351-1354	CC	denotes	and
T27643	1355-1364	VBG	denotes	promoting
T27644	1365-1368	DT	denotes	the
T27645	1369-1372	CD	denotes	p65
T27646	1373-1384	NN	denotes	recruitment
T27647	1385-1389	IN	denotes	with
T27648	1390-1395	JJ	denotes	IκB-α
T27649	1396-1408	NN	denotes	displacement
T27650	1408-1409	.	denotes	.
T27651	1410-1414	NNP	denotes	HeLa
T27652	1415-1420	NNS	denotes	cells
T27653	1421-1422	-LRB-	denotes	(
T27654	1422-1423	CD	denotes	5
T27655	1424-1425	CD	denotes	×
T27656	1426-1429	CD	denotes	106
T27657	1429-1430	-RRB-	denotes	)
T27658	1431-1435	VBD	denotes	were
T27659	1436-1447	VBN	denotes	transfected
T27660	1448-1452	IN	denotes	with
T27661	1453-1464	NN	denotes	p3xFLAG-Tat
T27662	1464-1465	,	denotes	,
T27663	1466-1477	NN	denotes	p3xFLAG-Tat
T27664	1478-1479	NNP	denotes	C
T27665	1479-1480	-LRB-	denotes	(
T27666	1480-1488	CD	denotes	22,25,27
T27667	1488-1489	-RRB-	denotes	)
T27668	1489-1490	,	denotes	,
T27669	1491-1502	JJ	denotes	p3xFLAG-Tat
T27670	1503-1504	NN	denotes	R
T27671	1504-1505	-LRB-	denotes	(
T27672	1505-1507	CD	denotes	49
T27673	1508-1510	CD	denotes	57
T27674	1510-1511	-RRB-	denotes	)
T27675	1512-1514	CC	denotes	or
T27676	1515-1520	JJ	denotes	empty
T27677	1521-1527	NN	denotes	vector
T27678	1528-1529	-LRB-	denotes	(
T27679	1529-1531	CD	denotes	10
T27680	1532-1534	NN	denotes	µg
T27681	1534-1535	-RRB-	denotes	)
T27682	1535-1536	:	denotes	;
T27683	1537-1540	IN	denotes	for
T27684	1541-1544	CD	denotes	p65
T27685	1545-1548	NNP	denotes	RNA
T27686	1549-1561	NN	denotes	interference
T27687	1561-1562	,	denotes	,
T27688	1563-1568	NNS	denotes	cells
T27689	1569-1570	-LRB-	denotes	(
T27690	1570-1571	CD	denotes	5
T27691	1572-1573	CD	denotes	×
T27692	1574-1577	CD	denotes	106
T27693	1577-1578	-RRB-	denotes	)
T27694	1579-1583	VBD	denotes	were
T27695	1584-1595	VBN	denotes	transfected
T27696	1596-1600	IN	denotes	with
T27697	1601-1612	NN	denotes	p3xFLAG-Tat
T27698	1613-1614	-LRB-	denotes	(
T27699	1614-1616	CD	denotes	10
T27700	1617-1619	NN	denotes	µg
T27701	1619-1620	-RRB-	denotes	)
T27702	1621-1624	CC	denotes	and
T27703	1625-1630	NNP	denotes	siRNA
T27704	1631-1634	CD	denotes	p65
T27705	1635-1637	CC	denotes	or
T27706	1638-1643	JJ	denotes	siRNA
T27707	1644-1651	NN	denotes	control
T27708	1652-1653	-LRB-	denotes	(
T27709	1653-1656	CD	denotes	200
T27710	1657-1661	NN	denotes	pmol
T27711	1661-1662	-RRB-	denotes	)
T27712	1662-1663	.	denotes	.
T27713	1664-1680	CD	denotes	Twenty-four-hour
T27714	1681-1698	JJ	denotes	post-transfection
T27715	1698-1699	,	denotes	,
T27716	1700-1705	JJ	denotes	total
T27717	1706-1709	NNP	denotes	RNA
T27718	1710-1713	VBD	denotes	was
T27719	1714-1723	VBN	denotes	extracted
T27720	1724-1727	CC	denotes	and
T27721	1728-1736	VBN	denotes	analysed
T27722	1737-1739	IN	denotes	by
T27723	1740-1749	JJ	denotes	real-time
T27724	1750-1753	NNP	denotes	PCR
T27725	1754-1756	TO	denotes	to
T27726	1757-1765	VB	denotes	evaluate
T27727	1766-1769	DT	denotes	the
T27728	1770-1780	NN	denotes	expression
T27729	1781-1783	IN	denotes	of
T27730	1784-1790	NNP	denotes	MIP-1α
T27731	1791-1792	-LRB-	denotes	(
T27732	1792-1793	NNP	denotes	A
T27733	1793-1794	-RRB-	denotes	)
T27734	1794-1795	,	denotes	,
T27735	1796-1800	NNP	denotes	CSF3
T27736	1801-1802	-LRB-	denotes	(
T27737	1802-1803	NNP	denotes	B
T27738	1803-1804	-RRB-	denotes	)
T27739	1804-1805	,	denotes	,
T27740	1806-1809	NNP	denotes	LTA
T27741	1810-1811	-LRB-	denotes	(
T27742	1811-1812	NNP	denotes	C
T27743	1812-1813	-RRB-	denotes	)
T27744	1813-1814	,	denotes	,
T27745	1815-1821	NNP	denotes	NFKBIA
T27746	1822-1823	-LRB-	denotes	(
T27747	1823-1824	NNP	denotes	D
T27748	1824-1825	-RRB-	denotes	)
T27749	1825-1826	,	denotes	,
T27750	1827-1831	NNP	denotes	TLR2
T27751	1832-1833	-LRB-	denotes	(
T27752	1833-1834	NNP	denotes	E
T27753	1834-1835	-RRB-	denotes	)
T27754	1835-1836	,	denotes	,
T27755	1837-1842	NNP	denotes	GAPDH
T27756	1843-1844	-LRB-	denotes	(
T27757	1844-1845	NN	denotes	F
T27758	1845-1846	-RRB-	denotes	)
T27759	1846-1847	,	denotes	,
T27760	1848-1852	NNP	denotes	ACTB
T27761	1853-1854	-LRB-	denotes	(
T27762	1854-1855	NNP	denotes	G
T27763	1855-1856	-RRB-	denotes	)
T27764	1857-1862	NNS	denotes	genes
T27765	1862-1863	.	denotes	.
T27766	1864-1865	-LRB-	denotes	(
T27767	1865-1866	NNP	denotes	H
T27768	1866-1867	-RRB-	denotes	)
T27769	1868-1872	NNP	denotes	HeLa
T27770	1873-1878	NNS	denotes	cells
T27771	1879-1880	-LRB-	denotes	(
T27772	1880-1881	CD	denotes	5
T27773	1882-1883	CD	denotes	×
T27774	1884-1887	CD	denotes	106
T27775	1887-1888	-RRB-	denotes	)
T27776	1889-1893	VBD	denotes	were
T27777	1894-1905	VBN	denotes	transfected
T27778	1906-1910	IN	denotes	with
T27779	1911-1922	NN	denotes	p3xFLAG-Tat
T27780	1922-1923	,	denotes	,
T27781	1924-1926	CC	denotes	or
T27782	1927-1932	JJ	denotes	empty
T27783	1933-1939	NN	denotes	vector
T27784	1940-1941	-LRB-	denotes	(
T27785	1941-1943	CD	denotes	10
T27786	1944-1946	NN	denotes	µg
T27787	1946-1947	-RRB-	denotes	)
T27788	1948-1951	CC	denotes	and
T27789	1952-1954	CD	denotes	48
T27790	1955-1956	NN	denotes	h
T27791	1957-1962	RB	denotes	later
T27792	1963-1967	NNP	denotes	ChIP
T27793	1968-1971	VBD	denotes	was
T27794	1972-1981	VBN	denotes	performed
T27795	1982-1986	IN	denotes	with
T27796	1987-1995	JJ	denotes	anti-p65
T27797	1996-2004	NN	denotes	antibody
T27798	2004-2005	.	denotes	.
T27799	2006-2015	JJ	denotes	Real-time
T27800	2016-2019	NNP	denotes	PCR
T27801	2020-2023	VBD	denotes	was
T27802	2024-2033	VBN	denotes	performed
T27803	2034-2038	IN	denotes	with
T27804	2039-2046	NNS	denotes	primers
T27805	2047-2055	JJ	denotes	specific
T27806	2056-2059	IN	denotes	for
T27807	2060-2063	DT	denotes	the
T27808	2064-2073	VBN	denotes	indicated
T27809	2074-2083	NNS	denotes	promoters
T27810	2083-2084	.	denotes	.
T27811	2085-2086	-LRB-	denotes	(
T27812	2086-2087	PRP	denotes	I
T27813	2087-2088	-RRB-	denotes	)
T27814	2089-2093	NNP	denotes	HeLa
T27815	2094-2099	NNS	denotes	cells
T27816	2100-2101	-LRB-	denotes	(
T27817	2101-2102	CD	denotes	5
T27818	2103-2104	CD	denotes	×
T27819	2105-2108	CD	denotes	106
T27820	2108-2109	-RRB-	denotes	)
T27821	2110-2114	VBD	denotes	were
T27822	2115-2126	VBN	denotes	transfected
T27823	2127-2131	IN	denotes	with
T27824	2132-2137	JJ	denotes	empty
T27825	2138-2144	NN	denotes	vector
T27826	2144-2145	,	denotes	,
T27827	2146-2148	CC	denotes	or
T27828	2149-2160	NN	denotes	p3xFLAG-Tat
T27829	2161-2162	-LRB-	denotes	(
T27830	2162-2164	CD	denotes	10
T27831	2165-2167	NN	denotes	µg
T27832	2167-2168	-RRB-	denotes	)
T27833	2169-2171	IN	denotes	in
T27834	2172-2180	NN	denotes	presence
T27835	2181-2183	CC	denotes	or
T27836	2184-2191	NN	denotes	absence
T27837	2192-2194	IN	denotes	of
T27838	2195-2200	NNP	denotes	siRNA
T27839	2201-2204	CD	denotes	p65
T27840	2204-2205	,	denotes	,
T27841	2206-2208	CC	denotes	or
T27842	2209-2214	NN	denotes	siRNA
T27843	2215-2222	NN	denotes	control
T27844	2223-2224	-LRB-	denotes	(
T27845	2224-2227	CD	denotes	200
T27846	2228-2232	NN	denotes	pmol
T27847	2232-2233	-RRB-	denotes	)
T27848	2233-2234	:	denotes	;
T27849	2235-2237	CD	denotes	48
T27850	2238-2239	NN	denotes	h
T27851	2240-2245	RB	denotes	later
T27852	2245-2246	,	denotes	,
T27853	2247-2251	NNP	denotes	ChIP
T27854	2252-2255	VBD	denotes	was
T27855	2256-2265	VBN	denotes	performed
T27856	2266-2270	IN	denotes	with
T27857	2271-2280	JJ	denotes	anti-FLAG
T27858	2281-2289	NN	denotes	antibody
T27859	2289-2290	.	denotes	.
T27860	2291-2300	JJ	denotes	Real-time
T27861	2301-2304	NNP	denotes	PCR
T27862	2305-2308	VBD	denotes	was
T27863	2309-2318	VBN	denotes	performed
T27864	2319-2323	IN	denotes	with
T27865	2324-2331	NNS	denotes	primers
T27866	2332-2340	JJ	denotes	specific
T27867	2341-2344	IN	denotes	for
T27868	2345-2348	DT	denotes	the
T27869	2349-2358	VBN	denotes	indicated
T27870	2359-2368	NNS	denotes	promoters
T27871	2368-2369	.	denotes	.
T27872	2370-2371	-LRB-	denotes	(
T27873	2371-2372	NNP	denotes	J
T27874	2372-2373	-RRB-	denotes	)
T27875	2374-2378	NNP	denotes	HeLa
T27876	2379-2384	NNS	denotes	cells
T27877	2385-2386	-LRB-	denotes	(
T27878	2386-2387	CD	denotes	5
T27879	2388-2389	CD	denotes	×
T27880	2390-2393	CD	denotes	106
T27881	2393-2394	-RRB-	denotes	)
T27882	2395-2399	VBD	denotes	were
T27883	2400-2411	VBN	denotes	transfected
T27884	2412-2416	IN	denotes	with
T27885	2417-2422	JJ	denotes	empty
T27886	2423-2429	NN	denotes	vector
T27887	2429-2430	,	denotes	,
T27888	2431-2442	NN	denotes	p3xFLAG-Tat
T27889	2443-2444	-LRB-	denotes	(
T27890	2444-2446	CD	denotes	10
T27891	2447-2449	NN	denotes	µg
T27892	2449-2450	-RRB-	denotes	)
T27893	2450-2451	,	denotes	,
T27894	2452-2454	CC	denotes	or
T27895	2455-2460	JJ	denotes	empty
T27896	2461-2467	NN	denotes	vector
T27897	2468-2472	CC	denotes	plus
T27898	2473-2478	NNP	denotes	siRNA
T27899	2479-2484	NNP	denotes	IκB-α
T27900	2485-2487	CC	denotes	or
T27901	2488-2493	NNP	denotes	siRNA
T27902	2494-2501	NN	denotes	control
T27903	2502-2503	-LRB-	denotes	(
T27904	2503-2506	CD	denotes	200
T27905	2507-2511	NN	denotes	pmol
T27906	2511-2512	-RRB-	denotes	)
T27907	2512-2513	:	denotes	;
T27908	2514-2516	CD	denotes	48
T27909	2517-2518	NN	denotes	h
T27910	2519-2524	RB	denotes	later
T27911	2524-2525	,	denotes	,
T27912	2526-2530	NNP	denotes	ChIP
T27913	2531-2534	VBD	denotes	was
T27914	2535-2544	VBN	denotes	performed
T27915	2545-2549	IN	denotes	with
T27916	2550-2560	JJ	denotes	anti-IκB-α
T27917	2561-2569	NN	denotes	antibody
T27918	2569-2570	.	denotes	.
T27919	2571-2580	JJ	denotes	Real-time
T27920	2581-2584	NNP	denotes	PCR
T27921	2585-2588	VBD	denotes	was
T27922	2589-2598	VBN	denotes	performed
T27923	2599-2603	IN	denotes	with
T27924	2604-2611	NNS	denotes	primers
T27925	2612-2620	JJ	denotes	specific
T27926	2621-2624	IN	denotes	for
T27927	2625-2628	DT	denotes	the
T27928	2629-2638	VBN	denotes	indicated
T27929	2639-2648	NNS	denotes	promoters
T27930	2648-2649	.	denotes	.
T27931	2650-2656	NNS	denotes	Values
T27932	2657-2658	-LRB-	denotes	(
T27933	2658-2662	JJ	denotes	mean
T27934	2663-2664	NN	denotes	±
T27935	2665-2667	NNP	denotes	SE
T27936	2667-2668	,	denotes	,
T27937	2669-2670	JJ	denotes	n
T27938	2671-2672	SYM	denotes	=
T27939	2673-2674	LS	denotes	3
T27940	2674-2675	-RRB-	denotes	)
T27941	2676-2679	VBP	denotes	are
T27942	2680-2685	VBN	denotes	shown
T27943	2685-2686	.	denotes	.
T27944	2687-2690	DT	denotes	The
T27945	2691-2700	NNS	denotes	asterisks
T27946	2701-2709	VBP	denotes	indicate
T27947	2710-2723	RB	denotes	statistically
T27948	2724-2735	JJ	denotes	significant
T27949	2736-2747	NNS	denotes	differences
T27950	2748-2756	VBN	denotes	compared
T27951	2757-2759	TO	denotes	to
T27952	2760-2763	DT	denotes	the
T27953	2764-2771	NN	denotes	control
T27954	2772-2773	-LRB-	denotes	(
T27955	2773-2778	JJ	denotes	empty
T27956	2779-2785	NN	denotes	vector
T27957	2785-2786	-RRB-	denotes	)
T27958	2787-2796	VBG	denotes	according
T27959	2797-2799	TO	denotes	to
T27960	2800-2803	DT	denotes	the
T27961	2804-2811	NN	denotes	Student
T27962	2811-2813	POS	denotes	's
T27963	2814-2820	JJS	denotes	t-test
T27964	2821-2822	-LRB-	denotes	(
T27965	2822-2823	NNP	denotes	P
T27966	2824-2825	CD	denotes	<
T27967	2826-2830	CD	denotes	0.05
T27968	2830-2831	-RRB-	denotes	)
T27969	2831-2832	.	denotes	.
R12788	T15998	T15999	nsubj	Tat,activates
R12789	T15999	T15999	ROOT	activates,activates
R12790	T16000	T16002	det	the,expression
R12791	T16001	T16002	amod	p65-dependent,expression
R12792	T16002	T15999	dobj	expression,activates
R12793	T16003	T16002	prep	of,expression
R12794	T16004	T16005	amod	NF-κB-responsive,genes
R12795	T16005	T16003	pobj	genes,of
R12796	T16006	T15999	punct	",",activates
R12797	T16007	T15999	conj	occupies,activates
R12798	T16008	T16010	det	the,enhancers
R12799	T16009	T16010	amod	NF-κB,enhancers
R12800	T16010	T16007	dobj	enhancers,occupies
R12801	T16011	T16007	cc	and,occupies
R12802	T16012	T16007	conj	promotes,occupies
R12803	T16013	T16015	det	the,recruitment
R12804	T16014	T16015	nummod	p65,recruitment
R12805	T16015	T16012	dobj	recruitment,promotes
R12806	T16016	T16012	prep	with,promotes
R12807	T16017	T16018	amod	IκB-α,displacement
R12808	T16018	T16016	pobj	displacement,with
R12809	T16019	T16020	nsubj	We,analysed
R12810	T16020	T16012	conj	analysed,promotes
R12811	T16021	T16022	det	the,action
R12812	T16022	T16020	dobj	action,analysed
R12813	T16023	T16022	prep	of,action
R12814	T16024	T16023	pobj	Tat,of
R12815	T16025	T16022	prep	on,action
R12816	T16026	T16027	det	the,expression
R12817	T16027	T16025	pobj	expression,on
R12818	T16028	T16027	prep	of,expression
R12819	T16029	T16030	amod	NF-κB-responsive,genes
R12820	T16030	T16028	pobj	genes,of
R12821	T16031	T16020	prep	in,analysed
R12822	T16032	T16031	pobj	vivo,in
R12823	T16033	T15999	punct	.,activates
R12824	T16034	T16041	prep	To,transfected
R12825	T16035	T16036	det	this,end
R12826	T16036	T16034	pobj	end,To
R12827	T16037	T16041	punct	",",transfected
R12828	T16038	T16039	compound	HeLa,cells
R12829	T16039	T16041	nsubjpass	cells,transfected
R12830	T16040	T16041	auxpass	were,transfected
R12831	T16041	T16041	ROOT	transfected,transfected
R12832	T16042	T16041	prep	with,transfected
R12833	T16043	T16042	pobj	FLAG-Tat,with
R12834	T16044	T16043	punct	",",FLAG-Tat
R12835	T16045	T16046	compound	FLAG-Tat,C
R12836	T16046	T16043	conj	C,FLAG-Tat
R12837	T16047	T16046	punct	(,C
R12838	T16048	T16046	appos	"22,25,27",C
R12839	T16049	T16046	punct	),C
R12840	T16050	T16053	det	A,R
R12841	T16051	T16052	cc	or,FLAG-Tat
R12842	T16052	T16053	compound	FLAG-Tat,R
R12843	T16053	T16053	ROOT	R,R
R12844	T16054	T16053	punct	(,R
R12845	T16055	T16053	appos	49,R
R12846	T16056	T16053	appos	57,R
R12847	T16057	T16053	punct	),R
R12848	T16058	T16062	det	A,h
R12849	T16059	T16058	punct	",",A
R12850	T16060	T16058	cc	and,A
R12851	T16061	T16062	nummod	48,h
R12852	T16062	T16063	npadvmod	h,later
R12853	T16063	T16073	advmod	later,analysed
R12854	T16064	T16065	det	the,expression
R12855	T16065	T16073	nsubjpass	expression,analysed
R12856	T16066	T16065	prep	of,expression
R12857	T16067	T16068	det	a,number
R12858	T16068	T16066	pobj	number,of
R12859	T16069	T16068	prep	of,number
R12860	T16070	T16071	amod	NF-κB-dependent,genes
R12861	T16071	T16069	pobj	genes,of
R12862	T16072	T16073	auxpass	was,analysed
R12863	T16073	T16073	ROOT	analysed,analysed
R12864	T16074	T16073	agent	by,analysed
R12865	T16075	T16076	amod	real-time,PCR
R12866	T16076	T16074	pobj	PCR,by
R12867	T16077	T16073	punct	.,analysed
R12868	T16078	T16080	nsubj	Tat,increased
R12869	T16079	T16080	advmod	significantly,increased
R12870	T16080	T16080	ROOT	increased,increased
R12871	T16081	T16082	det	the,expression
R12872	T16082	T16080	dobj	expression,increased
R12873	T16083	T16082	prep	of,expression
R12874	T16084	T16083	pobj	MIP-1α,of
R12875	T16085	T16084	punct	",",MIP-1α
R12876	T16086	T16084	conj	CSF3,MIP-1α
R12877	T16087	T16086	punct	",",CSF3
R12878	T16088	T16086	conj	LTA,CSF3
R12879	T16089	T16088	punct	",",LTA
R12880	T16090	T16088	conj	NFKBIA,LTA
R12881	T16091	T16090	cc	and,NFKBIA
R12882	T16092	T16090	conj	TLR2,NFKBIA
R12883	T16093	T16080	punct	",",increased
R12884	T16094	T16080	prep	while,increased
R12885	T16095	T16096	det	the,mutants
R12886	T16096	T16094	pobj	mutants,while
R12887	T16097	T16098	compound	Tat,C
R12888	T16098	T16096	appos	C,mutants
R12889	T16099	T16100	punct	(,"22,25,27"
R12890	T16100	T16098	parataxis	"22,25,27",C
R12891	T16101	T16102	punct	),A
R12892	T16102	T16096	appos	A,mutants
R12893	T16103	T16102	cc	and,A
R12894	T16104	T16105	compound	Tat,R
R12895	T16105	T16102	conj	R,A
R12896	T16106	T16105	punct	(,R
R12897	T16107	T16105	appos	49,R
R12898	T16108	T16105	appos	57,R
R12899	T16109	T16105	punct	),R
R12900	T16110	T16111	nsubj	A,were
R12901	T16111	T16111	ROOT	were,were
R12902	T16112	T16111	acomp	ineffective,were
R12903	T16113	T16114	punct	(,Figure
R12904	T16114	T16111	parataxis	Figure,were
R12905	T16115	T16114	nummod	5A,Figure
R12906	T16116	T16114	appos	E,Figure
R12907	T16117	T16114	punct	),Figure
R12908	T16118	T16111	punct	.,were
R12909	T16119	T16121	det	The,transactivation
R12910	T16120	T16121	amod	Tat-dependent,transactivation
R12911	T16121	T16127	nsubjpass	transactivation,abolished
R12912	T16122	T16121	prep	of,transactivation
R12913	T16123	T16125	det	the,genes
R12914	T16124	T16125	amod	NF-κB-dependent,genes
R12915	T16125	T16122	pobj	genes,of
R12916	T16126	T16127	auxpass	was,abolished
R12917	T16127	T16127	ROOT	abolished,abolished
R12918	T16128	T16131	advmod	when,transfected
R12919	T16129	T16131	nsubjpass	cells,transfected
R12920	T16130	T16131	auxpass	were,transfected
R12921	T16131	T16127	advcl	transfected,abolished
R12922	T16132	T16131	prep	with,transfected
R12923	T16133	T16134	compound	siRNA,p65
R12924	T16134	T16132	pobj	p65,with
R12925	T16135	T16127	punct	",",abolished
R12926	T16136	T16127	advcl	indicating,abolished
R12927	T16137	T16143	mark	that,mediated
R12928	T16138	T16141	det	the,activation
R12929	T16139	T16141	nmod	Tat,activation
R12930	T16140	T16141	amod	transcriptional,activation
R12931	T16141	T16143	nsubjpass	activation,mediated
R12932	T16142	T16143	auxpass	was,mediated
R12933	T16143	T16136	ccomp	mediated,indicating
R12934	T16144	T16143	agent	by,mediated
R12935	T16145	T16144	pobj	p65,by
R12936	T16146	T16147	punct	(,Figure
R12937	T16147	T16145	appos	Figure,p65
R12938	T16148	T16147	nummod	5A,Figure
R12939	T16149	T16147	appos	E,Figure
R12940	T16150	T16147	punct	),Figure
R12941	T16151	T16127	punct	.,abolished
R12942	T16152	T16164	advmod	Differently,unaffected
R12943	T16153	T16164	punct	",",unaffected
R12944	T16154	T16155	det	the,expression
R12945	T16155	T16164	nsubjpass	expression,unaffected
R12946	T16156	T16155	prep	of,expression
R12947	T16157	T16159	det	the,genes
R12948	T16158	T16159	amod	NF-κB-independent,genes
R12949	T16159	T16156	pobj	genes,of
R12950	T16160	T16155	appos	GAPDH,expression
R12951	T16161	T16160	cc	and,GAPDH
R12952	T16162	T16160	conj	ACTB,GAPDH
R12953	T16163	T16164	auxpass	was,unaffected
R12954	T16164	T16164	ROOT	unaffected,unaffected
R12955	T16165	T16164	agent	by,unaffected
R12956	T16166	T16165	pobj	wild-type,by
R12957	T16167	T16166	cc	and,wild-type
R12958	T16168	T16166	conj	Tat,wild-type
R12959	T16169	T16166	conj	mutants,wild-type
R12960	T16170	T16171	punct	(,Figure
R12961	T16171	T16169	appos	Figure,mutants
R12962	T16172	T16171	nummod	5F,Figure
R12963	T16173	T16171	cc	and,Figure
R12964	T16174	T16171	conj	G,Figure
R12965	T16175	T16169	punct	),mutants
R12966	T16176	T16164	punct	.,unaffected
R12967	T16177	T16178	det	These,results
R12968	T16178	T16179	nsubj	results,were
R12969	T16179	T16179	ROOT	were,were
R12970	T16180	T16179	acomp	consistent,were
R12971	T16181	T16180	prep	with,consistent
R12972	T16182	T16183	det	the,requirement
R12973	T16183	T16181	pobj	requirement,with
R12974	T16184	T16183	prep	of,requirement
R12975	T16185	T16187	preconj	both,cysteine-rich
R12976	T16186	T16187	det	the,cysteine-rich
R12977	T16187	T16184	pobj	cysteine-rich,of
R12978	T16188	T16187	cc	and,cysteine-rich
R12979	T16189	T16190	amod	arginine-rich,domains
R12980	T16190	T16187	conj	domains,cysteine-rich
R12981	T16191	T16190	prep	of,domains
R12982	T16192	T16191	pobj	Tat,of
R12983	T16193	T16194	aux	to,enhance
R12984	T16194	T16179	xcomp	enhance,were
R12985	T16195	T16197	det	the,activity
R12986	T16196	T16197	compound	NF-κB,activity
R12987	T16197	T16194	dobj	activity,enhance
R12988	T16198	T16179	punct	",",were
R12989	T16199	T16179	advcl	suggesting,were
R12990	T16200	T16209	mark	that,occur
R12991	T16201	T16202	det	the,up-regulation
R12992	T16202	T16209	nsubj	up-regulation,occur
R12993	T16203	T16202	prep	of,up-regulation
R12994	T16204	T16205	amod	NF-κB-responsive,genes
R12995	T16205	T16203	pobj	genes,of
R12996	T16206	T16202	prep	by,up-regulation
R12997	T16207	T16206	pobj	Tat,by
R12998	T16208	T16209	aux	might,occur
R12999	T16209	T16199	ccomp	occur,suggesting
R13000	T16210	T16209	prep	through,occur
R13001	T16211	T16212	amod	physical,interaction
R13002	T16212	T16210	pobj	interaction,through
R13003	T16213	T16212	prep	of,interaction
R13004	T16214	T16216	det	the,protein
R13005	T16215	T16216	amod	viral,protein
R13006	T16216	T16213	pobj	protein,of
R13007	T16217	T16212	prep	with,interaction
R13008	T16218	T16217	pobj	p65,with
R13009	T16219	T16218	cc	and,p65
R13010	T16220	T16218	conj	IκB-α,p65
R13011	T16221	T16179	punct	.,were
R13012	T16222	T16233	nsubj	MIP-1α,encodes
R13013	T16223	T16222	punct	",",MIP-1α
R13014	T16224	T16225	nsubj	which,was
R13015	T16225	T16222	relcl	was,MIP-1α
R13016	T16226	T16229	det	the,gene
R13017	T16227	T16228	advmod	mostly,activated
R13018	T16228	T16229	amod	activated,gene
R13019	T16229	T16225	attr	gene,was
R13020	T16230	T16229	prep	by,gene
R13021	T16231	T16230	pobj	Tat,by
R13022	T16232	T16222	punct	",",MIP-1α
R13023	T16233	T16233	ROOT	encodes,encodes
R13024	T16234	T16233	prep	for,encodes
R13025	T16235	T16236	det	a,chemokine
R13026	T16236	T16234	pobj	chemokine,for
R13027	T16237	T16238	nsubj	that,promotes
R13028	T16238	T16236	relcl	promotes,chemokine
R13029	T16239	T16240	det	the,recruitment
R13030	T16240	T16238	dobj	recruitment,promotes
R13031	T16241	T16240	prep	of,recruitment
R13032	T16242	T16243	amod	pro-inflammatory,cells
R13033	T16243	T16241	pobj	cells,of
R13034	T16244	T16245	punct	(,56
R13035	T16245	T16238	npadvmod	56,promotes
R13036	T16246	T16236	punct	),chemokine
R13037	T16247	T16233	punct	.,encodes
R13038	T16248	T16256	advmod	Consistently,increased
R13039	T16249	T16248	prep	with,Consistently
R13040	T16250	T16251	poss	our,findings
R13041	T16251	T16249	pobj	findings,with
R13042	T16252	T16256	punct	",",increased
R13043	T16253	T16254	amod	MIP-1α,expression
R13044	T16254	T16256	nsubjpass	expression,increased
R13045	T16255	T16256	auxpass	was,increased
R13046	T16256	T16275	ccomp	increased,induced
R13047	T16257	T16256	prep	in,increased
R13048	T16258	T16259	amod	glial,cells
R13049	T16259	T16257	pobj	cells,in
R13050	T16260	T16259	cc	and,cells
R13051	T16261	T16262	amod	lymph,nodes
R13052	T16262	T16259	conj	nodes,cells
R13053	T16263	T16262	prep	of,nodes
R13054	T16264	T16265	compound	AIDS,patients
R13055	T16265	T16263	pobj	patients,of
R13056	T16266	T16265	punct	(,patients
R13057	T16267	T16265	appos	"57,58",patients
R13058	T16268	T16265	punct	),patients
R13059	T16269	T16275	punct	;,induced
R13060	T16270	T16275	advmod	moreover,induced
R13061	T16271	T16275	punct	",",induced
R13062	T16272	T16273	compound	MIP-1α,production
R13063	T16273	T16275	nsubjpass	production,induced
R13064	T16274	T16275	auxpass	was,induced
R13065	T16275	T16275	ROOT	induced,induced
R13066	T16276	T16275	agent	by,induced
R13067	T16277	T16278	compound	HIV-1,infection
R13068	T16278	T16276	pobj	infection,by
R13069	T16279	T16280	punct	(,"59,60"
R13070	T16280	T16278	appos	"59,60",infection
R13071	T16281	T16275	punct	),induced
R13072	T16282	T16275	cc	and,induced
R13073	T16283	T16284	compound	Tat,protein
R13074	T16284	T16275	conj	protein,induced
R13075	T16285	T16286	punct	(,"57,61,62"
R13076	T16286	T16284	appos	"57,61,62",protein
R13077	T16287	T16284	punct	),protein
R13078	T16288	T16275	punct	.,induced
R13079	T16289	T16291	det	The,regulation
R13080	T16290	T16291	amod	transcriptional,regulation
R13081	T16291	T16297	nsubjpass	regulation,characterized
R13082	T16292	T16291	prep	of,regulation
R13083	T16293	T16292	pobj	MIP-1α,of
R13084	T16294	T16297	aux	has,characterized
R13085	T16295	T16297	auxpass	been,characterized
R13086	T16296	T16297	advmod	poorly,characterized
R13087	T16297	T16297	ROOT	characterized,characterized
R13088	T16298	T16297	punct	.,characterized
R13089	T16299	T16300	amod	Jaspar-based,analysis
R13090	T16300	T16304	nsubj	analysis,predicted
R13091	T16301	T16300	punct	(,analysis
R13092	T16302	T16300	appos	http://jaspar.genereg.net/,analysis
R13093	T16303	T16300	punct	),analysis
R13094	T16304	T16304	ROOT	predicted,predicted
R13095	T16305	T16308	nummod	three,enhancers
R13096	T16306	T16308	amod	putative,enhancers
R13097	T16307	T16308	compound	NF-κB,enhancers
R13098	T16308	T16304	dobj	enhancers,predicted
R13099	T16309	T16308	prep	in,enhancers
R13100	T16310	T16313	det	the,region
R13101	T16311	T16313	amod	proximal,region
R13102	T16312	T16313	compound	promoter,region
R13103	T16313	T16309	pobj	region,in
R13104	T16314	T16313	prep	of,region
R13105	T16315	T16317	det	the,gene
R13106	T16316	T16317	compound	MIP-1α,gene
R13107	T16317	T16314	pobj	gene,of
R13108	T16318	T16308	punct	:,enhancers
R13109	T16319	T16308	appos	NF-κB1,enhancers
R13110	T16320	T16304	punct	",",predicted
R13111	T16321	T16324	meta	−,−
R13112	T16322	T16323	nummod	1023,/
R13113	T16323	T16324	dep	/,−
R13114	T16324	T16304	dep	−,predicted
R13115	T16325	T16326	nummod	1014,nucleotides
R13116	T16326	T16324	dobj	nucleotides,−
R13117	T16327	T16324	punct	;,−
R13118	T16328	T16324	conj	NF-κB2,−
R13119	T16329	T16328	punct	",",NF-κB2
R13120	T16330	T16333	nummod	−,−
R13121	T16331	T16333	nummod	661,−
R13122	T16332	T16333	compound	/,−
R13123	T16333	T16328	appos	−,NF-κB2
R13124	T16334	T16335	nummod	652,nucleotides
R13125	T16335	T16333	appos	nucleotides,−
R13126	T16336	T16333	punct	;,−
R13127	T16337	T16333	conj	NF-κB3,−
R13128	T16338	T16337	punct	",",NF-κB3
R13129	T16339	T16340	nummod	+370,/
R13130	T16340	T16333	appos	/,−
R13131	T16341	T16342	nummod	+379,nucleotides
R13132	T16342	T16340	appos	nucleotides,/
R13133	T16343	T16346	punct	(,S3A
R13134	T16344	T16346	compound	Supplementary,S3A
R13135	T16345	T16346	compound	Figure,S3A
R13136	T16346	T16342	appos	S3A,nucleotides
R13137	T16347	T16333	punct	),−
R13138	T16348	T16304	punct	.,predicted
R13139	T16349	T16350	aux	To,validate
R13140	T16350	T16362	advcl	validate,stimulated
R13141	T16351	T16355	det	the,sites
R13142	T16352	T16355	amod	predicted,sites
R13143	T16353	T16355	amod	NF-κB,sites
R13144	T16354	T16355	amod	binding,sites
R13145	T16355	T16350	dobj	sites,validate
R13146	T16356	T16355	prep	of,sites
R13147	T16357	T16359	det	the,promoter
R13148	T16358	T16359	amod	MIP-1α,promoter
R13149	T16359	T16356	pobj	promoter,of
R13150	T16360	T16362	punct	",",stimulated
R13151	T16361	T16362	nsubj	we,stimulated
R13152	T16362	T16362	ROOT	stimulated,stimulated
R13153	T16363	T16364	compound	HeLa,cells
R13154	T16364	T16362	dobj	cells,stimulated
R13155	T16365	T16362	prep	with,stimulated
R13156	T16366	T16365	pobj	TNF-α,with
R13157	T16367	T16366	punct	",",TNF-α
R13158	T16368	T16371	det	a,inducer
R13159	T16369	T16371	amod	well-known,inducer
R13160	T16370	T16371	compound	NF-κB,inducer
R13161	T16371	T16366	appos	inducer,TNF-α
R13162	T16372	T16362	punct	",",stimulated
R13163	T16373	T16362	cc	and,stimulated
R13164	T16374	T16362	conj	measured,stimulated
R13165	T16375	T16377	det	the,levels
R13166	T16376	T16377	compound	expression,levels
R13167	T16377	T16374	dobj	levels,measured
R13168	T16378	T16377	prep	of,levels
R13169	T16379	T16378	pobj	MIP-1α,of
R13170	T16380	T16374	prep	by,measured
R13171	T16381	T16382	amod	real-time,PCR
R13172	T16382	T16380	pobj	PCR,by
R13173	T16383	T16374	punct	",",measured
R13174	T16384	T16374	cc	and,measured
R13175	T16385	T16387	det	the,occupancy
R13176	T16386	T16387	amod	p65,occupancy
R13177	T16387	T16374	conj	occupancy,measured
R13178	T16388	T16387	prep	of,occupancy
R13179	T16389	T16391	det	the,sites
R13180	T16390	T16391	compound	NF-κB,sites
R13181	T16391	T16388	pobj	sites,of
R13182	T16392	T16387	prep	by,occupancy
R13183	T16393	T16392	pobj	ChIP,by
R13184	T16394	T16362	punct	.,stimulated
R13185	T16395	T16396	nsubj	TNF-α,activated
R13186	T16396	T16396	ROOT	activated,activated
R13187	T16397	T16398	det	the,expression
R13188	T16398	T16396	dobj	expression,activated
R13189	T16399	T16398	prep	of,expression
R13190	T16400	T16399	pobj	MIP-1α,of
R13191	T16401	T16396	cc	and,activated
R13192	T16402	T16396	conj	induced,activated
R13193	T16403	T16405	det	the,recruitment
R13194	T16404	T16405	nummod	p65,recruitment
R13195	T16405	T16402	dobj	recruitment,induced
R13196	T16406	T16402	prep	to,induced
R13197	T16407	T16409	det	the,site
R13198	T16408	T16409	amod	NF-κB1,site
R13199	T16409	T16406	pobj	site,to
R13200	T16410	T16409	prep	of,site
R13201	T16411	T16410	pobj	MIP-1α,of
R13202	T16412	T16402	prep	without,induced
R13203	T16413	T16412	pcomp	affecting,without
R13204	T16414	T16415	det	the,occupancy
R13205	T16415	T16413	dobj	occupancy,affecting
R13206	T16416	T16415	prep	of,occupancy
R13207	T16417	T16419	det	the,NF-κB2
R13208	T16418	T16419	amod	putative,NF-κB2
R13209	T16419	T16416	pobj	NF-κB2,of
R13210	T16420	T16419	cc	and,NF-κB2
R13211	T16421	T16422	amod	NF-κB3,sites
R13212	T16422	T16419	conj	sites,NF-κB2
R13213	T16423	T16419	punct	(,NF-κB2
R13214	T16424	T16426	compound	Supplementary,S3B
R13215	T16425	T16426	compound	Figure,S3B
R13216	T16426	T16419	appos	S3B,NF-κB2
R13217	T16427	T16426	cc	and,S3B
R13218	T16428	T16426	conj	S3C,S3B
R13219	T16429	T16419	punct	),NF-κB2
R13220	T16430	T16396	punct	.,activated
R13221	T16431	T16433	nsubj	Tat,promoted
R13222	T16432	T16433	advmod	also,promoted
R13223	T16433	T16433	ROOT	promoted,promoted
R13224	T16434	T16435	det	the,recruitment
R13225	T16435	T16433	dobj	recruitment,promoted
R13226	T16436	T16435	prep	of,recruitment
R13227	T16437	T16436	pobj	p65,of
R13228	T16438	T16433	prep	to,promoted
R13229	T16439	T16441	det	the,site
R13230	T16440	T16441	amod	NF-κB1,site
R13231	T16441	T16438	pobj	site,to
R13232	T16442	T16441	prep	of,site
R13233	T16443	T16442	pobj	MIP-1α,of
R13234	T16444	T16433	punct	",",promoted
R13235	T16445	T16449	mark	while,affect
R13236	T16446	T16449	nsubj	it,affect
R13237	T16447	T16449	aux	did,affect
R13238	T16448	T16449	neg	not,affect
R13239	T16449	T16433	advcl	affect,promoted
R13240	T16450	T16452	det	the,NF-κB2
R13241	T16451	T16452	amod	putative,NF-κB2
R13242	T16452	T16449	dobj	NF-κB2,affect
R13243	T16453	T16452	cc	and,NF-κB2
R13244	T16454	T16455	amod	NF-κB3,sites
R13245	T16455	T16452	conj	sites,NF-κB2
R13246	T16456	T16459	punct	(,S3D
R13247	T16457	T16459	compound	Supplementary,S3D
R13248	T16458	T16459	compound	Figure,S3D
R13249	T16459	T16455	appos	S3D,sites
R13250	T16460	T16455	punct	),sites
R13251	T16461	T16433	punct	.,promoted
R13252	T16462	T16465	advmod	Altogether,indicated
R13253	T16463	T16464	det	these,results
R13254	T16464	T16465	nsubj	results,indicated
R13255	T16465	T16465	ROOT	indicated,indicated
R13256	T16466	T16470	mark	that,was
R13257	T16467	T16469	det	the,site
R13258	T16468	T16469	amod	NF-κB1,site
R13259	T16469	T16470	nsubj	site,was
R13260	T16470	T16465	ccomp	was,indicated
R13261	T16471	T16475	det	the,enhancer
R13262	T16472	T16475	amod	only,enhancer
R13263	T16473	T16475	amod	effective,enhancer
R13264	T16474	T16475	compound	NF-κB,enhancer
R13265	T16475	T16470	attr	enhancer,was
R13266	T16476	T16475	prep	of,enhancer
R13267	T16477	T16479	det	the,promoter
R13268	T16478	T16479	amod	MIP-1α,promoter
R13269	T16479	T16476	pobj	promoter,of
R13270	T16480	T16470	prep	in,was
R13271	T16481	T16480	pobj	response,in
R13272	T16482	T16481	prep	to,response
R13273	T16483	T16482	pobj	TNF-α,to
R13274	T16484	T16483	cc	and,TNF-α
R13275	T16485	T16483	conj	Tat,TNF-α
R13276	T16486	T16465	punct	.,indicated
R13277	T16487	T16492	advmod	Similarly,increased
R13278	T16488	T16487	prep	to,Similarly
R13279	T16489	T16488	pobj	MIP-1α,to
R13280	T16490	T16492	punct	",",increased
R13281	T16491	T16492	nsubj	Tat,increased
R13282	T16492	T16492	ROOT	increased,increased
R13283	T16493	T16494	det	the,recruitment
R13284	T16494	T16492	dobj	recruitment,increased
R13285	T16495	T16494	prep	of,recruitment
R13286	T16496	T16495	pobj	p65,of
R13287	T16497	T16492	prep	to,increased
R13288	T16498	T16500	det	the,enhancers
R13289	T16499	T16500	amod	NF-κB,enhancers
R13290	T16500	T16497	pobj	enhancers,to
R13291	T16501	T16500	prep	of,enhancers
R13292	T16502	T16501	pobj	CSF3,of
R13293	T16503	T16502	punct	",",CSF3
R13294	T16504	T16502	conj	LTA,CSF3
R13295	T16505	T16504	punct	",",LTA
R13296	T16506	T16504	conj	NFKBIA,LTA
R13297	T16507	T16506	cc	and,NFKBIA
R13298	T16508	T16506	conj	TLR2,NFKBIA
R13299	T16509	T16492	punct	",",increased
R13300	T16510	T16512	mark	while,was
R13301	T16511	T16512	nsubj	it,was
R13302	T16512	T16492	advcl	was,increased
R13303	T16513	T16512	acomp	ineffective,was
R13304	T16514	T16512	prep	at,was
R13305	T16515	T16516	det	the,promoters
R13306	T16516	T16514	pobj	promoters,at
R13307	T16517	T16516	prep	of,promoters
R13308	T16518	T16517	pobj	GAPDH,of
R13309	T16519	T16518	cc	and,GAPDH
R13310	T16520	T16518	conj	ACTB,GAPDH
R13311	T16521	T16523	punct	(,5H
R13312	T16522	T16523	compound	Figure,5H
R13313	T16523	T16520	appos	5H,ACTB
R13314	T16524	T16523	punct	),5H
R13315	T16525	T16492	punct	.,increased
R13316	T16526	T16530	prep	By,bound
R13317	T16527	T16526	pobj	ChIP,By
R13318	T16528	T16530	punct	",",bound
R13319	T16529	T16530	nsubj	Tat,bound
R13320	T16530	T16530	ROOT	bound,bound
R13321	T16531	T16530	prep	to,bound
R13322	T16532	T16534	det	the,promoters
R13323	T16533	T16534	amod	NF-κB-responsive,promoters
R13324	T16534	T16531	pobj	promoters,to
R13325	T16535	T16530	punct	",",bound
R13326	T16536	T16530	cc	and,bound
R13327	T16537	T16538	neg	not,to
R13328	T16538	T16530	conj	to,bound
R13329	T16539	T16540	det	the,GAPDH
R13330	T16540	T16538	pobj	GAPDH,to
R13331	T16541	T16604	ccomp	displaced,indicating
R13332	T16542	T16540	cc	and,GAPDH
R13333	T16543	T16540	conj	ACTB,GAPDH
R13334	T16544	T16540	conj	promoters,GAPDH
R13335	T16545	T16530	punct	",",bound
R13336	T16546	T16530	prep	with,bound
R13337	T16547	T16546	pobj	loss,with
R13338	T16548	T16547	prep	of,loss
R13339	T16549	T16550	amod	binding,following
R13340	T16550	T16548	pobj	following,of
R13341	T16551	T16553	nummod	p65,interference
R13342	T16552	T16553	compound	RNA,interference
R13343	T16553	T16550	dobj	interference,following
R13344	T16554	T16556	punct	(,5I
R13345	T16555	T16556	compound	Figure,5I
R13346	T16556	T16553	appos	5I,interference
R13347	T16557	T16556	punct	),5I
R13348	T16558	T16530	punct	",",bound
R13349	T16559	T16530	advcl	suggesting,bound
R13350	T16560	T16563	mark	that,occurred
R13351	T16561	T16562	compound	Tat,occupancy
R13352	T16562	T16563	nsubj	occupancy,occurred
R13353	T16563	T16559	ccomp	occurred,suggesting
R13354	T16564	T16563	prep	via,occurred
R13355	T16565	T16566	nummod	p65,interaction
R13356	T16566	T16564	pobj	interaction,via
R13357	T16567	T16530	punct	.,bound
R13358	T16568	T16574	prep	As,chromatin-immunoprecipitated
R13359	T16569	T16570	amod	additional,findings
R13360	T16570	T16568	pobj	findings,As
R13361	T16571	T16574	punct	",",chromatin-immunoprecipitated
R13362	T16572	T16574	nsubjpass	IκB-α,chromatin-immunoprecipitated
R13363	T16573	T16574	auxpass	was,chromatin-immunoprecipitated
R13364	T16574	T16574	ROOT	chromatin-immunoprecipitated,chromatin-immunoprecipitated
R13365	T16575	T16574	prep	at,chromatin-immunoprecipitated
R13366	T16576	T16578	det	the,enhancers
R13367	T16577	T16578	amod	NF-κB,enhancers
R13368	T16578	T16575	pobj	enhancers,at
R13369	T16579	T16578	prep	in,enhancers
R13370	T16580	T16579	pobj	absence,in
R13371	T16581	T16580	prep	of,absence
R13372	T16582	T16581	pobj	Tat,of
R13373	T16583	T16574	punct	",",chromatin-immunoprecipitated
R13374	T16584	T16574	cc	and,chromatin-immunoprecipitated
R13375	T16585	T16588	nsubjpass	it,removed
R13376	T16586	T16588	auxpass	was,removed
R13377	T16587	T16588	advmod	significantly,removed
R13378	T16588	T16574	conj	removed,chromatin-immunoprecipitated
R13379	T16589	T16588	prep	in,removed
R13380	T16590	T16589	pobj	presence,in
R13381	T16591	T16590	prep	of,presence
R13382	T16592	T16591	pobj	Tat,of
R13383	T16593	T16588	punct	",",removed
R13384	T16594	T16588	cc	or,removed
R13385	T16595	T16588	conj	following,removed
R13386	T16596	T16598	compound	IκB-α,interference
R13387	T16597	T16598	compound	RNA,interference
R13388	T16598	T16595	dobj	interference,following
R13389	T16599	T16600	punct	(,Figure
R13390	T16600	T16598	appos	Figure,interference
R13391	T16601	T16600	nummod	5J,Figure
R13392	T16602	T16600	punct	),Figure
R13393	T16603	T16595	punct	",",following
R13394	T16604	T16595	dep	indicating,following
R13395	T16605	T16541	mark	that,displaced
R13396	T16606	T16541	nsubj	Tat,displaced
R13397	T16607	T16541	dobj	IκB-α,displaced
R13398	T16608	T16541	prep	from,displaced
R13399	T16609	T16608	pobj	promoters,from
R13400	T16610	T16588	punct	.,removed
R21767	T27724	T27722	pobj	PCR,by
R21768	T27725	T27726	aux	to,evaluate
R21769	T27726	T27721	xcomp	evaluate,analysed
R21770	T27727	T27728	det	the,expression
R21771	T27728	T27726	dobj	expression,evaluate
R21806	T27763	T27760	punct	),ACTB
R21807	T27764	T27729	pobj	genes,of
R21808	T27765	T27719	punct	.,extracted
R21809	T27766	T27777	punct	(,transfected
R21810	T27767	T27770	compound	H,cells
R21811	T27768	T27769	punct	),HeLa
R21812	T27769	T27770	compound	HeLa,cells
R21813	T27770	T27777	nsubjpass	cells,transfected
R21814	T27771	T27770	punct	(,cells
R21815	T27772	T27774	nummod	5,106
R21849	T27806	T27805	prep	for,specific
R21850	T27807	T27809	det	the,promoters
R21851	T27808	T27809	amod	indicated,promoters
R21852	T27809	T27806	pobj	promoters,for
R21853	T27810	T27802	punct	.,performed
R21854	T27811	T27814	punct	(,HeLa
R21855	T27812	T27814	nsubj	I,HeLa
R21856	T27813	T27814	punct	),HeLa
R21857	T27814	T27822	nsubjpass	HeLa,transfected
R21858	T27815	T27814	dobj	cells,HeLa
R21859	T27816	T27815	punct	(,cells
R21860	T27817	T27819	nummod	5,106
R21861	T27818	T27819	nummod	×,106
R21862	T27819	T27815	appos	106,cells
R21863	T27820	T27815	punct	),cells
R21864	T27821	T27822	auxpass	were,transfected
R21865	T27822	T27855	ccomp	transfected,performed
R21866	T27823	T27822	prep	with,transfected
R21867	T27824	T27825	amod	empty,vector
R21868	T27825	T27823	pobj	vector,with
R21869	T27826	T27825	punct	",",vector
R21870	T27827	T27825	cc	or,vector
R21871	T27828	T27825	conj	p3xFLAG-Tat,vector
R21872	T27829	T27828	punct	(,p3xFLAG-Tat
R21873	T27830	T27831	nummod	10,µg
R21874	T27831	T27828	appos	µg,p3xFLAG-Tat
R21875	T27832	T27828	punct	),p3xFLAG-Tat
R21876	T27833	T27825	prep	in,vector
R21877	T27834	T27833	pobj	presence,in
R21878	T27835	T27834	cc	or,presence
R21879	T27836	T27834	conj	absence,presence
R21880	T27837	T27836	prep	of,absence
R21881	T27838	T27839	compound	siRNA,p65
R21882	T27839	T27837	pobj	p65,of
R21883	T27840	T27839	punct	",",p65
R21884	T27841	T27839	cc	or,p65
R21885	T27842	T27843	compound	siRNA,control
R21886	T27843	T27839	conj	control,p65
R21887	T27844	T27846	punct	(,pmol
R21888	T27845	T27846	nummod	200,pmol
R21889	T27846	T27843	appos	pmol,control
R21890	T27847	T27822	punct	),transfected
R21891	T27848	T27855	punct	;,performed
R21892	T27849	T27850	nummod	48,h
R21893	T27850	T27851	npadvmod	h,later
R21894	T27851	T27855	advmod	later,performed
R21895	T27852	T27855	punct	",",performed
R21896	T27853	T27855	nsubjpass	ChIP,performed
R21897	T27854	T27855	auxpass	was,performed
R21898	T27855	T27855	ROOT	performed,performed
R21899	T27856	T27855	prep	with,performed
R21900	T27857	T27858	amod	anti-FLAG,antibody
R21901	T27858	T27856	pobj	antibody,with
R21902	T27859	T27855	punct	.,performed
R21903	T27860	T27861	compound	Real-time,PCR
R21904	T27861	T27863	nsubjpass	PCR,performed
R21905	T27862	T27863	auxpass	was,performed
R21906	T27863	T27863	ROOT	performed,performed
R21907	T27864	T27863	prep	with,performed
R21908	T27865	T27864	pobj	primers,with
R21909	T27866	T27865	amod	specific,primers
R21910	T27867	T27866	prep	for,specific
R21911	T27868	T27870	det	the,promoters
R21912	T27869	T27870	amod	indicated,promoters
R21913	T27870	T27867	pobj	promoters,for
R21914	T27871	T27863	punct	.,performed
R21915	T27872	T27883	punct	(,transfected
R21916	T27873	T27876	compound	J,cells
R21917	T27874	T27875	punct	),HeLa
R21918	T27875	T27876	compound	HeLa,cells
R21919	T27876	T27883	nsubjpass	cells,transfected
R21920	T27877	T27876	punct	(,cells
R21921	T27878	T27880	nummod	5,106
R21922	T27879	T27880	nummod	×,106
R21923	T27880	T27876	appos	106,cells
R21924	T27881	T27876	punct	),cells
R21925	T27882	T27883	auxpass	were,transfected
R21926	T27883	T27914	advcl	transfected,performed
R21927	T27884	T27883	prep	with,transfected
R21928	T27885	T27886	amod	empty,vector
R21929	T27886	T27884	pobj	vector,with
R21930	T27887	T27886	punct	",",vector
R21931	T27888	T27886	conj	p3xFLAG-Tat,vector
R21932	T27889	T27888	punct	(,p3xFLAG-Tat
R21933	T27890	T27891	nummod	10,µg
R21934	T27891	T27888	appos	µg,p3xFLAG-Tat
R21935	T27892	T27888	punct	),p3xFLAG-Tat
R21936	T27893	T27888	punct	",",p3xFLAG-Tat
R21937	T27894	T27888	cc	or,p3xFLAG-Tat
R21938	T27895	T27896	amod	empty,vector
R21939	T27896	T27888	conj	vector,p3xFLAG-Tat
R21940	T27897	T27896	cc	plus,vector
R21941	T27898	T27899	compound	siRNA,IκB-α
R21942	T27899	T27896	conj	IκB-α,vector
R21943	T27900	T27899	cc	or,IκB-α
R21944	T27901	T27902	compound	siRNA,control
R21945	T27902	T27899	conj	control,IκB-α
R21946	T27903	T27902	punct	(,control
R21947	T27904	T27905	nummod	200,pmol
R21948	T27905	T27902	appos	pmol,control
R21949	T27906	T27902	punct	),control
R21950	T27907	T27899	punct	;,IκB-α
R21951	T27908	T27909	nummod	48,h
R21952	T27909	T27910	npadvmod	h,later
R21953	T27910	T27899	conj	later,IκB-α
R21954	T27911	T27914	punct	",",performed
R21955	T27912	T27914	nsubjpass	ChIP,performed
R21956	T27913	T27914	auxpass	was,performed
R21957	T27914	T27914	ROOT	performed,performed
R21958	T27915	T27914	prep	with,performed
R21959	T27916	T27917	amod	anti-IκB-α,antibody
R21960	T27917	T27915	pobj	antibody,with
R21961	T27918	T27914	punct	.,performed
R21962	T27919	T27920	compound	Real-time,PCR
R21963	T27920	T27922	nsubjpass	PCR,performed
R21964	T27921	T27922	auxpass	was,performed
R21965	T27922	T27922	ROOT	performed,performed
R21966	T27923	T27922	prep	with,performed
R21967	T27924	T27923	pobj	primers,with
R21968	T27925	T27924	amod	specific,primers
R21969	T27926	T27925	prep	for,specific
R21970	T27927	T27929	det	the,promoters
R21971	T27928	T27929	amod	indicated,promoters
R21972	T27929	T27926	pobj	promoters,for
R21973	T27930	T27922	punct	.,performed
R21974	T27931	T27942	nsubjpass	Values,shown
R21975	T27932	T27935	punct	(,SE
R21976	T27933	T27935	amod	mean,SE
R21977	T27934	T27935	compound	±,SE
R21978	T27935	T27931	appos	SE,Values
R21979	T27936	T27935	punct	",",SE
R21980	T27937	T27935	appos	n,SE
R21981	T27938	T27939	punct	=,3
R21982	T27939	T27937	nummod	3,n
R21983	T27940	T27935	punct	),SE
R21984	T27941	T27942	auxpass	are,shown
R21985	T27942	T27942	ROOT	shown,shown
R21986	T27943	T27942	punct	.,shown
R21987	T27944	T27945	det	The,asterisks
R21988	T27945	T27946	nsubj	asterisks,indicate
R21989	T27946	T27946	ROOT	indicate,indicate
R21990	T27947	T27948	advmod	statistically,significant
R21991	T27948	T27949	amod	significant,differences
R21992	T27949	T27946	dobj	differences,indicate
R21993	T27950	T27949	acl	compared,differences
R21994	T27951	T27950	prep	to,compared
R21995	T27952	T27953	det	the,control
R21996	T27953	T27951	pobj	control,to
R21997	T27954	T27953	punct	(,control
R21998	T27955	T27956	amod	empty,vector
R21999	T27956	T27953	appos	vector,control
R22000	T27957	T27953	punct	),control
R22001	T27958	T27946	prep	according,indicate
R22002	T27959	T27958	prep	to,according
R22003	T27960	T27961	det	the,Student
R22004	T27961	T27963	poss	Student,t-test
R22005	T27962	T27961	case	's,Student
R22006	T27963	T27959	pobj	t-test,to
R22007	T27964	T27963	punct	(,t-test
R22008	T27965	T27968	nmod	P,)
R22009	T27966	T27965	nummod	<,P
R22010	T27967	T27965	nummod	0.05,P
R22011	T27968	T27963	punct	),t-test
R22012	T27969	T27946	punct	.,indicate
R21694	T27651	T27652	compound	HeLa,cells
R21780	T27737	T27735	appos	B,CSF3
R21781	T27738	T27735	punct	),CSF3
R21782	T27739	T27735	punct	",",CSF3
R21783	T27740	T27735	conj	LTA,CSF3
R21784	T27741	T27742	punct	(,C
R21672	T27629	T27630	nsubj	Tat,activates
R21673	T27630	T27630	ROOT	activates,activates
R21674	T27631	T27633	det	the,expression
R21675	T27632	T27633	amod	p65-dependent,expression
R21676	T27633	T27630	dobj	expression,activates
R21677	T27634	T27633	prep	of,expression
R21678	T27635	T27636	amod	NF-κB-responsive,genes
R21679	T27636	T27634	pobj	genes,of
R21680	T27637	T27630	prep	by,activates
R21681	T27638	T27637	pcomp	occupying,by
R21682	T27639	T27641	det	the,enhancers
R21683	T27640	T27641	amod	NF-κB,enhancers
R21684	T27641	T27638	dobj	enhancers,occupying
R21685	T27642	T27638	cc	and,occupying
R21686	T27643	T27638	conj	promoting,occupying
R21687	T27644	T27646	det	the,recruitment
R21688	T27645	T27646	nummod	p65,recruitment
R21689	T27646	T27643	dobj	recruitment,promoting
R21690	T27647	T27643	prep	with,promoting
R21691	T27648	T27649	amod	IκB-α,displacement
R21692	T27649	T27647	pobj	displacement,with
R21693	T27650	T27630	punct	.,activates
R21695	T27652	T27659	nsubjpass	cells,transfected
R21696	T27653	T27652	punct	(,cells
R21697	T27654	T27656	nummod	5,106
R21698	T27655	T27656	nummod	×,106
R21699	T27656	T27652	appos	106,cells
R21700	T27657	T27652	punct	),cells
R21701	T27658	T27659	auxpass	were,transfected
R21702	T27659	T27659	ROOT	transfected,transfected
R21703	T27660	T27659	prep	with,transfected
R21704	T27661	T27660	pobj	p3xFLAG-Tat,with
R21705	T27662	T27659	punct	",",transfected
R21706	T27663	T27664	compound	p3xFLAG-Tat,C
R21707	T27664	T27659	npadvmod	C,transfected
R21708	T27665	T27664	punct	(,C
R21709	T27666	T27664	appos	"22,25,27",C
R21710	T27667	T27664	punct	),C
R21711	T27668	T27664	punct	",",C
R21712	T27669	T27670	amod	p3xFLAG-Tat,R
R21713	T27670	T27664	appos	R,C
R21714	T27671	T27673	punct	(,57
R21715	T27672	T27673	nummod	49,57
R21716	T27673	T27670	appos	57,R
R21717	T27674	T27673	punct	),57
R21718	T27675	T27673	cc	or,57
R21719	T27676	T27677	amod	empty,vector
R21720	T27677	T27673	conj	vector,57
R21721	T27678	T27677	punct	(,vector
R21722	T27679	T27680	nummod	10,µg
R21723	T27680	T27677	appos	µg,vector
R21724	T27681	T27677	punct	),vector
R21725	T27682	T27659	punct	;,transfected
R21726	T27683	T27659	prep	for,transfected
R21727	T27684	T27686	nummod	p65,interference
R21728	T27685	T27686	compound	RNA,interference
R21729	T27686	T27683	pobj	interference,for
R21730	T27687	T27686	punct	",",interference
R21731	T27688	T27686	appos	cells,interference
R21732	T27689	T27688	punct	(,cells
R21733	T27690	T27692	nummod	5,106
R21734	T27691	T27692	nummod	×,106
R21735	T27692	T27688	appos	106,cells
R21736	T27693	T27688	punct	),cells
R21737	T27694	T27695	auxpass	were,transfected
R21738	T27695	T27659	conj	transfected,transfected
R21739	T27696	T27695	prep	with,transfected
R21740	T27697	T27696	pobj	p3xFLAG-Tat,with
R21741	T27698	T27697	punct	(,p3xFLAG-Tat
R21742	T27699	T27700	nummod	10,µg
R21743	T27700	T27697	appos	µg,p3xFLAG-Tat
R21744	T27701	T27697	punct	),p3xFLAG-Tat
R21745	T27702	T27695	cc	and,transfected
R21746	T27703	T27695	conj	siRNA,transfected
R21747	T27704	T27707	nummod	p65,control
R21748	T27705	T27704	cc	or,p65
R21749	T27706	T27707	amod	siRNA,control
R21750	T27707	T27707	ROOT	control,control
R21751	T27708	T27710	punct	(,pmol
R21752	T27709	T27710	nummod	200,pmol
R21753	T27710	T27707	appos	pmol,control
R21754	T27711	T27710	punct	),pmol
R21755	T27712	T27659	punct	.,transfected
R21756	T27713	T27714	nummod	Twenty-four-hour,post-transfection
R21757	T27714	T27714	ROOT	post-transfection,post-transfection
R21758	T27715	T27714	punct	",",post-transfection
R21759	T27716	T27717	amod	total,RNA
R21760	T27717	T27719	nsubjpass	RNA,extracted
R21761	T27718	T27719	auxpass	was,extracted
R21762	T27719	T27714	conj	extracted,post-transfection
R21763	T27720	T27719	cc	and,extracted
R21764	T27721	T27719	conj	analysed,extracted
R21765	T27722	T27721	agent	by,analysed
R21766	T27723	T27724	amod	real-time,PCR
R21772	T27729	T27728	prep	of,expression
R21773	T27730	T27729	pobj	MIP-1α,of
R21774	T27731	T27730	punct	(,MIP-1α
R21775	T27732	T27730	appos	A,MIP-1α
R21776	T27733	T27730	punct	),MIP-1α
R21777	T27734	T27730	punct	",",MIP-1α
R21778	T27735	T27730	conj	CSF3,MIP-1α
R21779	T27736	T27737	punct	(,B
R21785	T27742	T27740	parataxis	C,LTA
R21786	T27743	T27742	punct	),C
R21787	T27744	T27740	punct	",",LTA
R21788	T27745	T27740	conj	NFKBIA,LTA
R21789	T27746	T27747	punct	(,D
R21790	T27747	T27745	appos	D,NFKBIA
R21791	T27748	T27745	punct	),NFKBIA
R21792	T27749	T27745	punct	",",NFKBIA
R21793	T27750	T27745	conj	TLR2,NFKBIA
R21794	T27751	T27752	punct	(,E
R21795	T27752	T27750	appos	E,TLR2
R21796	T27753	T27750	punct	),TLR2
R21797	T27754	T27750	punct	",",TLR2
R21798	T27755	T27750	conj	GAPDH,TLR2
R21799	T27756	T27757	punct	(,F
R21800	T27757	T27755	appos	F,GAPDH
R21801	T27758	T27755	punct	),GAPDH
R21802	T27759	T27755	punct	",",GAPDH
R21803	T27760	T27755	conj	ACTB,GAPDH
R21804	T27761	T27762	punct	(,G
R21805	T27762	T27760	appos	G,ACTB
R21816	T27773	T27774	nummod	×,106
R21817	T27774	T27770	appos	106,cells
R21818	T27775	T27770	punct	),cells
R21819	T27776	T27777	auxpass	were,transfected
R21820	T27777	T27777	ROOT	transfected,transfected
R21821	T27778	T27777	prep	with,transfected
R21822	T27779	T27778	pobj	p3xFLAG-Tat,with
R21823	T27780	T27779	punct	",",p3xFLAG-Tat
R21824	T27781	T27779	cc	or,p3xFLAG-Tat
R21825	T27782	T27783	amod	empty,vector
R21826	T27783	T27779	conj	vector,p3xFLAG-Tat
R21827	T27784	T27786	punct	(,µg
R21828	T27785	T27786	nummod	10,µg
R21829	T27786	T27779	appos	µg,p3xFLAG-Tat
R21830	T27787	T27786	punct	),µg
R21831	T27788	T27779	cc	and,p3xFLAG-Tat
R21832	T27789	T27790	nummod	48,h
R21833	T27790	T27791	npadvmod	h,later
R21834	T27791	T27794	advmod	later,performed
R21835	T27792	T27794	nsubjpass	ChIP,performed
R21836	T27793	T27794	auxpass	was,performed
R21837	T27794	T27777	conj	performed,transfected
R21838	T27795	T27794	prep	with,performed
R21839	T27796	T27797	amod	anti-p65,antibody
R21840	T27797	T27795	pobj	antibody,with
R21841	T27798	T27794	punct	.,performed
R21842	T27799	T27800	compound	Real-time,PCR
R21843	T27800	T27802	nsubjpass	PCR,performed
R21844	T27801	T27802	auxpass	was,performed
R21845	T27802	T27802	ROOT	performed,performed
R21846	T27803	T27802	prep	with,performed
R21847	T27804	T27803	pobj	primers,with
R21848	T27805	T27804	amod	specific,primers

UBERON-AE

Id	Subject	Object	Predicate	Lexical cue
T15077	3054-3059	http://purl.obolibrary.org/obo/UBERON_0002391	denotes	lymph
T15078	3054-3065	http://purl.obolibrary.org/obo/UBERON_0000029	denotes	lymph nodes

GO-BP

Id	Subject	Object	Predicate	Lexical cue
T16611	623-638	http://purl.obolibrary.org/obo/GO_2000144	denotes	transactivation
T16612	750-765	http://purl.obolibrary.org/obo/GO_0006351	denotes	transcriptional
T16613	3191-3206	http://purl.obolibrary.org/obo/GO_0006351	denotes	transcriptional
T16614	750-789	http://purl.obolibrary.org/obo/GO_1900622	denotes	transcriptional activation was mediated
T16615	1113-1123	http://purl.obolibrary.org/obo/GO_0065007	denotes	regulation
T16616	3207-3217	http://purl.obolibrary.org/obo/GO_0065007	denotes	regulation
T16617	3773-3788	http://purl.obolibrary.org/obo/GO_1904469	denotes	TNF-α activated
T16618	4263-4278	http://purl.obolibrary.org/obo/GO_0034612	denotes	response to TNF
T16619	4605-4621	http://purl.obolibrary.org/obo/GO_0016246	denotes	RNA interference
T16620	4872-4888	http://purl.obolibrary.org/obo/GO_0016246	denotes	RNA interference
T27981	1545-1561	http://purl.obolibrary.org/obo/GO_0016246	denotes	RNA interference

GO-MF

Id	Subject	Object	Predicate	Lexical cue
T16621	3551-3564	http://purl.obolibrary.org/obo/GO_0051059	denotes	NF-κB binding
T16622	3557-3564	http://purl.obolibrary.org/obo/GO_0005488	denotes	binding
T16623	4583-4590	http://purl.obolibrary.org/obo/GO_0005488	denotes	binding
T27982	1996-2004	http://purl.obolibrary.org/obo/GO_0003823	denotes	antibody
T27983	2281-2289	http://purl.obolibrary.org/obo/GO_0003823	denotes	antibody
T27984	2561-2569	http://purl.obolibrary.org/obo/GO_0003823	denotes	antibody

GO-CC

Id	Subject	Object	Predicate	Lexical cue
T16624	257-262	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T16625	687-692	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T16626	2959-2964	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T16627	3044-3049	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T16628	3614-3619	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T16629	4729-4738	http://purl.obolibrary.org/obo/GO_0000785	denotes	chromatin
T27972	1873-1878	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T27973	2094-2099	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T27974	2379-2384	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T27975	1996-2004	http://purl.obolibrary.org/obo/GO_0019815	denotes	antibody
T27976	2281-2289	http://purl.obolibrary.org/obo/GO_0019815	denotes	antibody
T27977	2561-2569	http://purl.obolibrary.org/obo/GO_0019815	denotes	antibody
T27978	1996-2004	http://purl.obolibrary.org/obo/GO_0042571	denotes	antibody
T27979	2281-2289	http://purl.obolibrary.org/obo/GO_0042571	denotes	antibody
T27980	2561-2569	http://purl.obolibrary.org/obo/GO_0042571	denotes	antibody
T27970	1415-1420	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T27971	1563-1568	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells

sentences

Id	Subject	Object	Predicate	Lexical cue
T15219	0-155	Sentence	denotes	Tat activates the p65-dependent expression of NF-κB-responsive genes, occupies the NF-κB enhancers and promotes the p65 recruitment with IκB-α displacement
T15220	156-238	Sentence	denotes	We analysed the action of Tat on the expression of NF-κB-responsive genes in vivo.
T15221	239-437	Sentence	denotes	To this end, HeLa cells were transfected with FLAG-Tat, FLAG-Tat C(22,25,27)A or FLAG-Tat R(49–57)A, and 48 h later the expression of a number of NF-κB-dependent genes was analysed by real-time PCR.
T15222	438-604	Sentence	denotes	Tat significantly increased the expression of MIP-1α, CSF3, LTA, NFKBIA and TLR2, while the mutants Tat C(22,25,27)A and Tat R(49–57)A were ineffective (Figure 5A–E).
T15223	605-811	Sentence	denotes	The Tat-dependent transactivation of the NF-κB-dependent genes was abolished when cells were transfected with siRNA p65, indicating that the Tat transcriptional activation was mediated by p65 (Figure 5A–E).
T15224	812-948	Sentence	denotes	Differently, the expression of the NF-κB-independent genes GAPDH and ACTB was unaffected by wild-type and Tat mutants (Figure 5F and G).
T15225	949-1238	Sentence	denotes	These results were consistent with the requirement of both the cysteine-rich and arginine-rich domains of Tat to enhance the NF-κB activity, suggesting that the up-regulation of NF-κB-responsive genes by Tat might occur through physical interaction of the viral protein with p65 and IκB-α.
T15226	2833-2970	Sentence	denotes	MIP-1α, which was the mostly activated gene by Tat, encodes for a chemokine that promotes the recruitment of pro-inflammatory cells (56).
T15227	2971-3186	Sentence	denotes	Consistently with our findings, MIP-1α expression was increased in glial cells and lymph nodes of AIDS patients (57,58); moreover, MIP-1α production was induced by HIV-1 infection (59,60) and Tat protein (57,61,62).
T15228	3187-3258	Sentence	denotes	The transcriptional regulation of MIP-1α has been poorly characterized.
T15229	3259-3524	Sentence	denotes	Jaspar-based analysis (http://jaspar.genereg.net/) predicted three putative NF-κB enhancers in the proximal promoter region of the MIP-1α gene: NF-κB1, −1023/−1014 nucleotides; NF-κB2, −661/−652 nucleotides; NF-κB3, +370/+379 nucleotides (Supplementary Figure S3A).
T15230	3525-3772	Sentence	denotes	To validate the predicted NF-κB binding sites of the MIP-1α promoter, we stimulated HeLa cells with TNF-α, a well-known NF-κB inducer, and measured the expression levels of MIP-1α by real-time PCR, and the p65 occupancy of the NF-κB sites by ChIP.
T15231	3773-3982	Sentence	denotes	TNF-α activated the expression of MIP-1α and induced the p65 recruitment to the NF-κB1 site of MIP-1α without affecting the occupancy of the putative NF-κB2 and NF-κB3 sites (Supplementary Figure S3B and S3C).
T15232	3983-4142	Sentence	denotes	Tat also promoted the recruitment of p65 to the NF-κB1 site of MIP-1α, while it did not affect the putative NF-κB2 and NF-κB3 sites (Supplementary Figure S3D).
T15233	4143-4289	Sentence	denotes	Altogether these results indicated that the NF-κB1 site was the only effective NF-κB enhancer of the MIP-1α promoter in response to TNF-α and Tat.
T15234	4290-4474	Sentence	denotes	Similarly to MIP-1α, Tat increased the recruitment of p65 to the NF-κB enhancers of CSF3, LTA, NFKBIA and TLR2, while it was ineffective at the promoters of GAPDH and ACTB (Figure 5H).
T15235	4475-4694	Sentence	denotes	By ChIP, Tat bound to the NF-κB-responsive promoters, and not to the GAPDH and ACTB promoters, with loss of binding following p65 RNA interference (Figure 5I), suggesting that Tat occupancy occurred via p65 interaction.
T15236	4695-4953	Sentence	denotes	As additional findings, IκB-α was chromatin-immunoprecipitated at the NF-κB enhancers in absence of Tat, and it was significantly removed in presence of Tat, or following IκB-α RNA interference (Figure 5J), indicating that Tat displaced IκB-α from promoters.
T27258	1249-1409	Sentence	denotes	Tat activates the p65-dependent expression of NF-κB-responsive genes by occupying the NF-κB enhancers and promoting the p65 recruitment with IκB-α displacement.
T27259	1410-1663	Sentence	denotes	HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, p3xFLAG-Tat C(22,25,27), p3xFLAG-Tat R(49–57) or empty vector (10 µg); for p65 RNA interference, cells (5 × 106) were transfected with p3xFLAG-Tat (10 µg) and siRNA p65 or siRNA control (200 pmol).
T27260	1664-2005	Sentence	denotes	Twenty-four-hour post-transfection, total RNA was extracted and analysed by real-time PCR to evaluate the expression of MIP-1α (A), CSF3 (B), LTA (C), NFKBIA (D), TLR2 (E), GAPDH (F), ACTB (G) genes. (H) HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, or empty vector (10 µg) and 48 h later ChIP was performed with anti-p65 antibody.
T27261	2006-2290	Sentence	denotes	Real-time PCR was performed with primers specific for the indicated promoters. (I) HeLa cells (5 × 106) were transfected with empty vector, or p3xFLAG-Tat (10 µg) in presence or absence of siRNA p65, or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-FLAG antibody.
T27262	2291-2570	Sentence	denotes	Real-time PCR was performed with primers specific for the indicated promoters. (J) HeLa cells (5 × 106) were transfected with empty vector, p3xFLAG-Tat (10 µg), or empty vector plus siRNA IκB-α or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-IκB-α antibody.
T27263	2571-2649	Sentence	denotes	Real-time PCR was performed with primers specific for the indicated promoters.
T27264	2650-2686	Sentence	denotes	Values (mean ± SE, n = 3) are shown.
T27265	2687-2832	Sentence	denotes	The asterisks indicate statistically significant differences compared to the control (empty vector) according to the Student's t-test (P < 0.05).
T182	0-155	Sentence	denotes	Tat activates the p65-dependent expression of NF-κB-responsive genes, occupies the NF-κB enhancers and promotes the p65 recruitment with IκB-α displacement
T183	156-238	Sentence	denotes	We analysed the action of Tat on the expression of NF-κB-responsive genes in vivo.
T184	239-437	Sentence	denotes	To this end, HeLa cells were transfected with FLAG-Tat, FLAG-Tat C(22,25,27)A or FLAG-Tat R(49–57)A, and 48 h later the expression of a number of NF-κB-dependent genes was analysed by real-time PCR.
T185	438-604	Sentence	denotes	Tat significantly increased the expression of MIP-1α, CSF3, LTA, NFKBIA and TLR2, while the mutants Tat C(22,25,27)A and Tat R(49–57)A were ineffective (Figure 5A–E).
T186	605-811	Sentence	denotes	The Tat-dependent transactivation of the NF-κB-dependent genes was abolished when cells were transfected with siRNA p65, indicating that the Tat transcriptional activation was mediated by p65 (Figure 5A–E).
T187	812-948	Sentence	denotes	Differently, the expression of the NF-κB-independent genes GAPDH and ACTB was unaffected by wild-type and Tat mutants (Figure 5F and G).
T188	949-1238	Sentence	denotes	These results were consistent with the requirement of both the cysteine-rich and arginine-rich domains of Tat to enhance the NF-κB activity, suggesting that the up-regulation of NF-κB-responsive genes by Tat might occur through physical interaction of the viral protein with p65 and IκB-α.
T189	1239-1248	Sentence	denotes	Figure 5.
T190	1249-1409	Sentence	denotes	Tat activates the p65-dependent expression of NF-κB-responsive genes by occupying the NF-κB enhancers and promoting the p65 recruitment with IκB-α displacement.
T191	1410-1663	Sentence	denotes	HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, p3xFLAG-Tat C(22,25,27), p3xFLAG-Tat R(49–57) or empty vector (10 µg); for p65 RNA interference, cells (5 × 106) were transfected with p3xFLAG-Tat (10 µg) and siRNA p65 or siRNA control (200 pmol).
T192	1664-2005	Sentence	denotes	Twenty-four-hour post-transfection, total RNA was extracted and analysed by real-time PCR to evaluate the expression of MIP-1α (A), CSF3 (B), LTA (C), NFKBIA (D), TLR2 (E), GAPDH (F), ACTB (G) genes. (H) HeLa cells (5 × 106) were transfected with p3xFLAG-Tat, or empty vector (10 µg) and 48 h later ChIP was performed with anti-p65 antibody.
T193	2006-2290	Sentence	denotes	Real-time PCR was performed with primers specific for the indicated promoters. (I) HeLa cells (5 × 106) were transfected with empty vector, or p3xFLAG-Tat (10 µg) in presence or absence of siRNA p65, or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-FLAG antibody.
T194	2291-2570	Sentence	denotes	Real-time PCR was performed with primers specific for the indicated promoters. (J) HeLa cells (5 × 106) were transfected with empty vector, p3xFLAG-Tat (10 µg), or empty vector plus siRNA IκB-α or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-IκB-α antibody.
T195	2571-2649	Sentence	denotes	Real-time PCR was performed with primers specific for the indicated promoters.
T196	2650-2686	Sentence	denotes	Values (mean ± SE, n = 3) are shown.
T197	2687-2832	Sentence	denotes	The asterisks indicate statistically significant differences compared to the control (empty vector) according to the Student's t-test (P < 0.05).
T198	2833-2970	Sentence	denotes	MIP-1α, which was the mostly activated gene by Tat, encodes for a chemokine that promotes the recruitment of pro-inflammatory cells (56).
T199	2971-3186	Sentence	denotes	Consistently with our findings, MIP-1α expression was increased in glial cells and lymph nodes of AIDS patients (57,58); moreover, MIP-1α production was induced by HIV-1 infection (59,60) and Tat protein (57,61,62).
T200	3187-3258	Sentence	denotes	The transcriptional regulation of MIP-1α has been poorly characterized.
T201	3259-3524	Sentence	denotes	Jaspar-based analysis (http://jaspar.genereg.net/) predicted three putative NF-κB enhancers in the proximal promoter region of the MIP-1α gene: NF-κB1, −1023/−1014 nucleotides; NF-κB2, −661/−652 nucleotides; NF-κB3, +370/+379 nucleotides (Supplementary Figure S3A).
T202	3525-3772	Sentence	denotes	To validate the predicted NF-κB binding sites of the MIP-1α promoter, we stimulated HeLa cells with TNF-α, a well-known NF-κB inducer, and measured the expression levels of MIP-1α by real-time PCR, and the p65 occupancy of the NF-κB sites by ChIP.
T203	3773-3982	Sentence	denotes	TNF-α activated the expression of MIP-1α and induced the p65 recruitment to the NF-κB1 site of MIP-1α without affecting the occupancy of the putative NF-κB2 and NF-κB3 sites (Supplementary Figure S3B and S3C).
T204	3983-4142	Sentence	denotes	Tat also promoted the recruitment of p65 to the NF-κB1 site of MIP-1α, while it did not affect the putative NF-κB2 and NF-κB3 sites (Supplementary Figure S3D).
T205	4143-4289	Sentence	denotes	Altogether these results indicated that the NF-κB1 site was the only effective NF-κB enhancer of the MIP-1α promoter in response to TNF-α and Tat.
T206	4290-4474	Sentence	denotes	Similarly to MIP-1α, Tat increased the recruitment of p65 to the NF-κB enhancers of CSF3, LTA, NFKBIA and TLR2, while it was ineffective at the promoters of GAPDH and ACTB (Figure 5H).
T207	4475-4694	Sentence	denotes	By ChIP, Tat bound to the NF-κB-responsive promoters, and not to the GAPDH and ACTB promoters, with loss of binding following p65 RNA interference (Figure 5I), suggesting that Tat occupancy occurred via p65 interaction.
T208	4695-4953	Sentence	denotes	As additional findings, IκB-α was chromatin-immunoprecipitated at the NF-κB enhancers in absence of Tat, and it was significantly removed in presence of Tat, or following IκB-α RNA interference (Figure 5J), indicating that Tat displaced IκB-α from promoters.

events-check-again

Id	Subject	Object	Predicate	Lexical cue	Negation	Speculation
T17262	0-3	Protein	denotes	Tat
T17263	18-21	Protein	denotes	p65
T17264	70-78	Binding	denotes	occupies
T17265	103-111	Positive_regulation	denotes	promotes
T17266	103-111	Positive_regulation	denotes	promotes
T17267	116-119	Protein	denotes	p65
T17268	120-131	Binding	denotes	recruitment
T17269	137-142	Protein	denotes	IκB-α
T17270	143-155	Binding	denotes	displacement	true
T17271	182-185	Protein	denotes	Tat
T17272	285-293	Protein	denotes	FLAG-Tat
T17273	295-316	Protein	denotes	FLAG-Tat C(22,25,27)A
T17274	320-338	Protein	denotes	FLAG-Tat R(49–57)A
T17275	438-441	Protein	denotes	Tat
T17276	456-465	Positive_regulation	denotes	increased
T17277	456-465	Positive_regulation	denotes	increased
T17278	456-465	Positive_regulation	denotes	increased
T17279	456-465	Positive_regulation	denotes	increased
T17280	456-465	Positive_regulation	denotes	increased
T17281	470-480	Gene_expression	denotes	expression
T17282	470-480	Gene_expression	denotes	expression
T17283	470-480	Gene_expression	denotes	expression
T17284	470-480	Gene_expression	denotes	expression
T17285	470-480	Gene_expression	denotes	expression
T17287	492-496	Protein	denotes	CSF3
T17288	498-501	Protein	denotes	LTA
T17289	503-509	Protein	denotes	NFKBIA
T17290	514-518	Protein	denotes	TLR2
T17291	538-554	Protein	denotes	Tat C(22,25,27)A
T17292	559-572	Protein	denotes	Tat R(49–57)A
T17293	578-589	Positive_regulation	denotes	ineffective	true
T17294	578-589	Positive_regulation	denotes	ineffective	true
T17295	578-589	Positive_regulation	denotes	ineffective	true
T17296	578-589	Positive_regulation	denotes	ineffective	true
T17297	578-589	Positive_regulation	denotes	ineffective	true
T17298	578-589	Positive_regulation	denotes	ineffective	true
T17299	578-589	Positive_regulation	denotes	ineffective	true
T17300	578-589	Positive_regulation	denotes	ineffective	true
T17301	578-589	Positive_regulation	denotes	ineffective	true
T17302	578-589	Positive_regulation	denotes	ineffective	true
T17303	609-612	Protein	denotes	Tat
T17304	715-724	Protein	denotes	siRNA p65
T17305	746-749	Protein	denotes	Tat
T17306	793-796	Protein	denotes	p65
T17307	871-876	Protein	denotes	GAPDH
T17308	881-885	Protein	denotes	ACTB
T17309	918-921	Protein	denotes	Tat
T17310	1055-1058	Protein	denotes	Tat
T17311	1153-1156	Protein	denotes	Tat
T17312	1186-1197	Binding	denotes	interaction
T17313	1224-1227	Protein	denotes	p65
T17314	1232-1237	Protein	denotes	IκB-α
T17315	2833-2839	Protein	denotes	MIP-1α
T17316	2862-2871	Positive_regulation	denotes	activated
T17317	2880-2883	Protein	denotes	Tat
T17318	3003-3009	Protein	denotes	MIP-1α
T17319	3010-3020	Gene_expression	denotes	expression
T17320	3025-3034	Positive_regulation	denotes	increased
T17321	3102-3108	Protein	denotes	MIP-1α
T17322	3109-3119	Gene_expression	denotes	production
T17323	3124-3131	Positive_regulation	denotes	induced
T17324	3163-3166	Protein	denotes	Tat
T17325	3191-3206	Transcription	denotes	transcriptional
T17326	3207-3217	Regulation	denotes	regulation
T17327	3221-3227	Protein	denotes	MIP-1α
T17328	3390-3396	Protein	denotes	MIP-1α
T17329	3578-3584	Protein	denotes	MIP-1α
T17330	3625-3630	Protein	denotes	TNF-α
T17331	3677-3687	Gene_expression	denotes	expression		true
T17332	3698-3704	Protein	denotes	MIP-1α
T17333	3731-3734	Protein	denotes	p65
T17334	3735-3744	Binding	denotes	occupancy		true
T17335	3752-3763	Entity	denotes	NF-κB sites
T17336	3773-3778	Protein	denotes	TNF-α
T17337	3779-3788	Positive_regulation	denotes	activated
T17338	3793-3803	Gene_expression	denotes	expression
T17339	3807-3813	Protein	denotes	MIP-1α
T17340	3818-3825	Positive_regulation	denotes	induced
T17341	3830-3833	Protein	denotes	p65
T17342	3834-3845	Binding	denotes	recruitment
T17343	3853-3864	Entity	denotes	NF-κB1 site
T17344	3868-3874	Protein	denotes	MIP-1α
T17345	3883-3892	Positive_regulation	denotes	affecting	true
T17346	3897-3906	Binding	denotes	occupancy
T17347	3983-3986	Protein	denotes	Tat
T17348	3992-4000	Positive_regulation	denotes	promoted
T17349	4005-4016	Binding	denotes	recruitment
T17350	4020-4023	Protein	denotes	p65
T17351	4031-4042	Entity	denotes	NF-κB1 site
T17352	4046-4052	Protein	denotes	MIP-1α
T17353	4244-4250	Protein	denotes	MIP-1α
T17354	4275-4280	Protein	denotes	TNF-α
T17355	4285-4288	Protein	denotes	Tat
T17356	4303-4309	Protein	denotes	MIP-1α
T17357	4311-4314	Protein	denotes	Tat
T17358	4315-4324	Positive_regulation	denotes	increased
T17359	4315-4324	Positive_regulation	denotes	increased
T17360	4315-4324	Positive_regulation	denotes	increased
T17361	4315-4324	Positive_regulation	denotes	increased
T17362	4329-4340	Binding	denotes	recruitment
T17363	4329-4340	Binding	denotes	recruitment
T17364	4329-4340	Binding	denotes	recruitment
T17365	4329-4340	Binding	denotes	recruitment
T17366	4344-4347	Protein	denotes	p65
T17367	4355-4370	Entity	denotes	NF-κB enhancers
T17368	4374-4378	Protein	denotes	CSF3
T17369	4380-4383	Protein	denotes	LTA
T17370	4385-4391	Protein	denotes	NFKBIA
T17371	4396-4400	Protein	denotes	TLR2
T17372	4415-4426	Positive_regulation	denotes	ineffective	true
T17373	4415-4426	Positive_regulation	denotes	ineffective	true
T17374	4434-4443	Entity	denotes	promoters
T17375	4447-4452	Protein	denotes	GAPDH
T17376	4457-4461	Protein	denotes	ACTB
T17377	4484-4487	Protein	denotes	Tat
T17378	4488-4493	Binding	denotes	bound	true
T17379	4544-4549	Protein	denotes	GAPDH
T17380	4554-4558	Protein	denotes	ACTB
T17381	4559-4568	Entity	denotes	promoters
T17382	4575-4579	Negative_regulation	denotes	loss
T17383	4601-4604	Protein	denotes	p65
T17384	4609-4621	Negative_regulation	denotes	interference
T17385	4651-4654	Protein	denotes	Tat
T17386	4655-4664	Binding	denotes	occupancy
T17387	4674-4677	Positive_regulation	denotes	via		true
T17388	4678-4681	Protein	denotes	p65
T17389	4682-4693	Binding	denotes	interaction		true
T17390	4719-4724	Protein	denotes	IκB-α
T17391	4729-4757	Binding	denotes	chromatin-immunoprecipitated
T17392	4795-4798	Protein	denotes	Tat
T17393	4825-4832	Negative_regulation	denotes	removed
T17394	4825-4832	Negative_regulation	denotes	removed
T17395	4848-4851	Protein	denotes	Tat
T17396	4866-4871	Protein	denotes	IκB-α
T17397	4876-4888	Negative_regulation	denotes	interference
T17398	4918-4921	Protein	denotes	Tat
T17399	4922-4931	Negative_regulation	denotes	displaced
T17400	4932-4937	Protein	denotes	IκB-α
T17401	4938-4942	Binding	denotes	from
T28144	1249-1252	Protein	denotes	Tat
T28145	1267-1270	Protein	denotes	p65
T28146	1321-1330	Binding	denotes	occupying
T28147	1355-1364	Positive_regulation	denotes	promoting
T28148	1355-1364	Positive_regulation	denotes	promoting
T28149	1369-1372	Protein	denotes	p65
T28150	1373-1384	Binding	denotes	recruitment
T28151	1390-1395	Protein	denotes	IκB-α
T28152	1396-1408	Binding	denotes	displacement	true
T28153	1461-1464	Protein	denotes	Tat
T28154	1474-1489	Protein	denotes	Tat C(22,25,27)
T28155	1499-1511	Protein	denotes	Tat R(49–57)
T28156	1541-1544	Protein	denotes	p65
T28157	1549-1561	Negative_regulation	denotes	interference
T28158	1609-1612	Protein	denotes	Tat
T28159	1625-1634	Protein	denotes	siRNA p65
T28160	1770-1780	Gene_expression	denotes	expression		true
T28161	1770-1780	Gene_expression	denotes	expression		true
T28162	1770-1780	Gene_expression	denotes	expression		true
T28163	1770-1780	Gene_expression	denotes	expression		true
T28164	1770-1780	Gene_expression	denotes	expression		true
T28165	1770-1780	Gene_expression	denotes	expression		true
T28166	1770-1780	Gene_expression	denotes	expression		true
T28167	1784-1790	Protein	denotes	MIP-1α
T28168	1796-1800	Protein	denotes	CSF3
T28169	1806-1809	Protein	denotes	LTA
T28170	1815-1821	Protein	denotes	NFKBIA
T28171	1827-1831	Protein	denotes	TLR2
T28172	1837-1842	Protein	denotes	GAPDH
T28173	1848-1852	Protein	denotes	ACTB
T28174	1919-1922	Protein	denotes	Tat
T28175	2157-2160	Protein	denotes	Tat
T28176	2195-2204	Protein	denotes	siRNA p65
T28177	2439-2442	Protein	denotes	Tat
T28178	2473-2484	Protein	denotes	siRNA IκB-α
T17286	484-490	Protein	denotes	MIP-1α
R13884	T17262	T17266	causeOf	Tat,promotes
R13885	T17262	T17265	causeOf	Tat,promotes
R13886	T17262	T17264	themeOf	Tat,occupies
R13887	T17267	T17268	themeOf	p65,recruitment
R13888	T17267	T17270	themeOf	p65,displacement
R13889	T17268	T17266	themeOf	recruitment,promotes
R13890	T17269	T17270	themeOf	IκB-α,displacement
R13891	T17270	T17265	themeOf	displacement,promotes
R13892	T17275	T17280	causeOf	Tat,increased
R13893	T17275	T17278	causeOf	Tat,increased
R13894	T17275	T17277	causeOf	Tat,increased
R13895	T17275	T17276	causeOf	Tat,increased
R13896	T17275	T17279	causeOf	Tat,increased
R13897	T17281	T17278	themeOf	expression,increased
R13898	T17281	T17296	themeOf	expression,ineffective
R13899	T17281	T17298	themeOf	expression,ineffective
R13900	T17282	T17276	themeOf	expression,increased
R13901	T17282	T17301	themeOf	expression,ineffective
R13902	T17282	T17295	themeOf	expression,ineffective
R13903	T17283	T17279	themeOf	expression,increased
R13904	T17283	T17297	themeOf	expression,ineffective
R13905	T17283	T17294	themeOf	expression,ineffective
R13906	T17284	T17277	themeOf	expression,increased
R13907	T17284	T17299	themeOf	expression,ineffective
R13908	T17284	T17300	themeOf	expression,ineffective
R13909	T17285	T17280	themeOf	expression,increased
R13910	T17285	T17293	themeOf	expression,ineffective
R13911	T17285	T17302	themeOf	expression,ineffective
R13912	T17286	T17285	themeOf	MIP-1α,expression
R13913	T17287	T17281	themeOf	CSF3,expression
R13914	T17288	T17284	themeOf	LTA,expression
R13915	T17289	T17282	themeOf	NFKBIA,expression
R13916	T17290	T17283	themeOf	TLR2,expression
R13917	T17291	T17293	causeOf	"Tat C(22,25,27)A",ineffective
R13918	T17291	T17296	causeOf	"Tat C(22,25,27)A",ineffective
R13919	T17291	T17299	causeOf	"Tat C(22,25,27)A",ineffective
R13920	T17291	T17301	causeOf	"Tat C(22,25,27)A",ineffective
R13921	T17291	T17297	causeOf	"Tat C(22,25,27)A",ineffective
R13922	T17292	T17302	causeOf	Tat R(49–57)A,ineffective
R13923	T17292	T17298	causeOf	Tat R(49–57)A,ineffective
R13924	T17292	T17300	causeOf	Tat R(49–57)A,ineffective
R13925	T17292	T17295	causeOf	Tat R(49–57)A,ineffective
R13926	T17292	T17294	causeOf	Tat R(49–57)A,ineffective
R13927	T17311	T17312	themeOf	Tat,interaction
R13928	T17313	T17312	themeOf	p65,interaction
R13929	T17315	T17316	themeOf	MIP-1α,activated
R13930	T17317	T17316	causeOf	Tat,activated
R13931	T17318	T17319	themeOf	MIP-1α,expression
R13932	T17319	T17320	themeOf	expression,increased
R13933	T17321	T17322	themeOf	MIP-1α,production
R13934	T17322	T17323	themeOf	production,induced
R13935	T17324	T17323	causeOf	Tat,induced
R13936	T17325	T17326	themeOf	transcriptional,regulation
R13937	T17327	T17325	themeOf	MIP-1α,transcriptional
R13938	T17332	T17331	themeOf	MIP-1α,expression
R13939	T17333	T17334	themeOf	p65,occupancy
R13940	T17335	T17334	themeOf	NF-κB sites,occupancy
R13941	T17335	T17332	partOf	NF-κB sites,MIP-1α
R13942	T17336	T17337	causeOf	TNF-α,activated
R13943	T17336	T17340	causeOf	TNF-α,induced
R13944	T17336	T17345	causeOf	TNF-α,affecting
R13945	T17338	T17337	themeOf	expression,activated
R13946	T17339	T17338	themeOf	MIP-1α,expression
R13947	T17341	T17342	themeOf	p65,recruitment
R13948	T17341	T17346	themeOf	p65,occupancy
R13949	T17342	T17340	themeOf	recruitment,induced
R13950	T17343	T17342	themeOf	NF-κB1 site,recruitment
R13951	T17343	T17344	partOf	NF-κB1 site,MIP-1α
R13952	T17346	T17345	themeOf	occupancy,affecting
R13953	T17347	T17348	causeOf	Tat,promoted
R13954	T17349	T17348	themeOf	recruitment,promoted
R13955	T17350	T17349	themeOf	p65,recruitment
R13956	T17351	T17349	themeOf	NF-κB1 site,recruitment
R13957	T17351	T17352	partOf	NF-κB1 site,MIP-1α
R13958	T17357	T17373	causeOf	Tat,ineffective
R13959	T17357	T17372	causeOf	Tat,ineffective
R13960	T17357	T17358	causeOf	Tat,increased
R13961	T17357	T17361	causeOf	Tat,increased
R13962	T17357	T17359	causeOf	Tat,increased
R13963	T17357	T17360	causeOf	Tat,increased
R13964	T17362	T17359	themeOf	recruitment,increased
R13965	T17363	T17358	themeOf	recruitment,increased
R13966	T17364	T17360	themeOf	recruitment,increased
R13967	T17365	T17361	themeOf	recruitment,increased
R13968	T17366	T17364	themeOf	p65,recruitment
R13969	T17366	T17363	themeOf	p65,recruitment
R13970	T17366	T17365	themeOf	p65,recruitment
R13971	T17366	T17362	themeOf	p65,recruitment
R13972	T17367	T17364	themeOf	NF-κB enhancers,recruitment
R13973	T17367	T17371	partOf	NF-κB enhancers,TLR2
R13974	T17367	T17363	themeOf	NF-κB enhancers,recruitment
R13975	T17367	T17368	partOf	NF-κB enhancers,CSF3
R13976	T17367	T17365	themeOf	NF-κB enhancers,recruitment
R13977	T17367	T17369	partOf	NF-κB enhancers,LTA
R13978	T17367	T17362	themeOf	NF-κB enhancers,recruitment
R13979	T17367	T17370	partOf	NF-κB enhancers,NFKBIA
R13980	T17374	T17373	themeOf	promoters,ineffective
R13981	T17374	T17375	partOf	promoters,GAPDH
R13982	T17374	T17372	themeOf	promoters,ineffective
R13983	T17374	T17376	partOf	promoters,ACTB
R13984	T17377	T17378	themeOf	Tat,bound
R13985	T17378	T17382	themeOf	bound,loss
R13986	T17381	T17378	themeOf	promoters,bound
R13987	T17381	T17379	partOf	promoters,GAPDH
R13988	T17383	T17384	themeOf	p65,interference
R13989	T17384	T17382	causeOf	interference,loss
R13990	T17385	T17386	themeOf	Tat,occupancy
R13991	T17385	T17389	themeOf	Tat,interaction
R13992	T17386	T17387	themeOf	occupancy,via
R13993	T17388	T17389	themeOf	p65,interaction
R13994	T17389	T17387	causeOf	interaction,via
R13995	T17390	T17391	themeOf	IκB-α,chromatin-immunoprecipitated
R13996	T17391	T17393	themeOf	chromatin-immunoprecipitated,removed
R13997	T17391	T17394	themeOf	chromatin-immunoprecipitated,removed
R13998	T17395	T17393	causeOf	Tat,removed
R13999	T17396	T17397	themeOf	IκB-α,interference
R14000	T17397	T17394	causeOf	interference,removed
R14001	T17398	T17399	causeOf	Tat,displaced
R14002	T17400	T17401	themeOf	IκB-α,from
R14003	T17401	T17399	themeOf	from,displaced
R22087	T28144	T28146	themeOf	Tat,occupying
R22088	T28144	T28148	causeOf	Tat,promoting
R22089	T28144	T28147	causeOf	Tat,promoting
R22090	T28149	T28150	themeOf	p65,recruitment
R22091	T28149	T28152	themeOf	p65,displacement
R22092	T28150	T28148	themeOf	recruitment,promoting
R22093	T28151	T28152	themeOf	IκB-α,displacement
R22094	T28152	T28147	themeOf	displacement,promoting
R22095	T28156	T28157	themeOf	p65,interference
R22096	T28167	T28162	themeOf	MIP-1α,expression
R22097	T28168	T28161	themeOf	CSF3,expression
R22098	T28169	T28160	themeOf	LTA,expression
R22099	T28170	T28163	themeOf	NFKBIA,expression
R22100	T28171	T28165	themeOf	TLR2,expression
R22101	T28172	T28164	themeOf	GAPDH,expression
R22102	T28173	T28166	themeOf	ACTB,expression

bionlp-st-ge-2016-reference-tees

Id	Subject	Object	Predicate	Lexical cue
T17402	0-3	Protein	denotes	Tat
T17403	18-21	Protein	denotes	p65
T17404	46-51	Protein	denotes	NF-κB
T17405	83-98	Protein	denotes	NF-κB enhancers
T17406	116-119	Protein	denotes	p65
T17407	137-155	Protein	denotes	IκB-α displacement
T17408	120-131	Binding	denotes	recruitment
T17409	103-111	Positive_regulation	denotes	promotes
T17410	182-185	Protein	denotes	Tat
T17411	207-212	Protein	denotes	NF-κB
T17412	285-293	Protein	denotes	FLAG-Tat
T17413	295-299	Protein	denotes	FLAG
T17414	300-303	Protein	denotes	Tat
T17415	385-390	Protein	denotes	NF-κB
T17416	438-441	Protein	denotes	Tat
T17417	484-490	Protein	denotes	MIP-1α
T17418	492-496	Protein	denotes	CSF3
T17419	498-501	Protein	denotes	LTA
T17420	503-509	Protein	denotes	NFKBIA
T17421	514-518	Protein	denotes	TLR2
T17422	470-480	Gene_expression	denotes	expression
T17423	470-480	Gene_expression	denotes	expression
T17424	470-480	Gene_expression	denotes	expression
T17425	470-480	Gene_expression	denotes	expression
T17426	470-480	Gene_expression	denotes	expression
T17427	456-465	Positive_regulation	denotes	increased
T17428	456-465	Positive_regulation	denotes	increased
T17429	456-465	Positive_regulation	denotes	increased
T17430	456-465	Positive_regulation	denotes	increased
T17431	456-465	Positive_regulation	denotes	increased
T17432	609-612	Protein	denotes	Tat
T17433	646-651	Protein	denotes	NF-κB
T17434	715-724	Protein	denotes	siRNA p65
T17435	746-749	Protein	denotes	Tat
T17436	766-776	Positive_regulation	denotes	activation
T17437	847-852	Protein	denotes	NF-κB
T17438	871-876	Protein	denotes	GAPDH
T17439	881-885	Protein	denotes	ACTB
T17440	918-929	Protein	denotes	Tat mutants
T17441	829-839	Gene_expression	denotes	expression
T17442	829-839	Gene_expression	denotes	expression
T17443	829-839	Gene_expression	denotes	expression
T17444	890-900	Regulation	denotes	unaffected
T17445	890-900	Regulation	denotes	unaffected
T17446	890-900	Regulation	denotes	unaffected
T17447	1055-1058	Protein	denotes	Tat
T17448	1074-1079	Protein	denotes	NF-κB
T17449	1127-1132	Protein	denotes	NF-κB
T17450	1153-1156	Protein	denotes	Tat
T17451	1224-1227	Protein	denotes	p65
T17452	1232-1237	Protein	denotes	IκB-α
T17453	1062-1069	Positive_regulation	denotes	enhance
T17454	1186-1197	Binding	denotes	interaction
T17455	1186-1197	Binding	denotes	interaction
T17456	2833-2839	Protein	denotes	MIP-1α
T17457	2880-2883	Protein	denotes	Tat
T17458	3003-3009	Protein	denotes	MIP-1α
T17459	3102-3108	Protein	denotes	MIP-1α
T17460	3163-3166	Protein	denotes	Tat
T17461	3010-3020	Gene_expression	denotes	expression
T17462	3025-3034	Positive_regulation	denotes	increased
T17463	3109-3119	Gene_expression	denotes	production
T17464	3124-3131	Positive_regulation	denotes	induced
T17465	3221-3227	Protein	denotes	MIP-1α
T17466	3207-3217	Regulation	denotes	regulation
T17467	3335-3350	Protein	denotes	NF-κB enhancers
T17468	3390-3401	Protein	denotes	MIP-1α gene
T17469	3403-3409	Protein	denotes	NF-κB1
T17470	3436-3442	Protein	denotes	NF-κB2
T17471	3467-3473	Protein	denotes	NF-κB3
T17472	3310-3319	Gene_expression	denotes	predicted
T17473	3310-3319	Gene_expression	denotes	predicted
T17474	3376-3382	Positive_regulation	denotes	region
T17475	3551-3556	Protein	denotes	NF-κB
T17476	3578-3593	Protein	denotes	MIP-1α promoter
T17477	3625-3630	Protein	denotes	TNF-α
T17478	3645-3650	Protein	denotes	NF-κB
T17479	3698-3704	Protein	denotes	MIP-1α
T17480	3731-3734	Protein	denotes	p65
T17481	3752-3763	Protein	denotes	NF-κB sites
T17482	3651-3658	Positive_regulation	denotes	inducer
T17483	3677-3687	Gene_expression	denotes	expression
T17484	3735-3744	Positive_regulation	denotes	occupancy
T17485	3735-3744	Positive_regulation	denotes	occupancy
T17486	3773-3778	Protein	denotes	TNF-α
T17487	3807-3813	Protein	denotes	MIP-1α
T17488	3830-3845	Protein	denotes	p65 recruitment
T17489	3853-3864	Protein	denotes	NF-κB1 site
T17490	3868-3874	Protein	denotes	MIP-1α
T17491	3923-3929	Protein	denotes	NF-κB2
T17492	3977-3980	Protein	denotes	S3C
T17493	3793-3803	Gene_expression	denotes	expression
T17494	3818-3825	Positive_regulation	denotes	induced
T17495	3897-3906	Gene_expression	denotes	occupancy
T17496	3897-3906	Gene_expression	denotes	occupancy
T17497	3779-3788	Positive_regulation	denotes	activated
T17498	3883-3892	Regulation	denotes	affecting
T17499	3883-3892	Regulation	denotes	affecting
T17500	3983-3986	Protein	denotes	Tat
T17501	4020-4023	Protein	denotes	p65
T17502	4031-4042	Protein	denotes	NF-κB1 site
T17503	4046-4052	Protein	denotes	MIP-1α
T17504	4091-4097	Protein	denotes	NF-κB2
T17505	4187-4198	Protein	denotes	NF-κB1 site
T17506	4222-4236	Protein	denotes	NF-κB enhancer
T17507	4244-4259	Protein	denotes	MIP-1α promoter
T17508	4275-4280	Protein	denotes	TNF-α
T17509	4285-4288	Protein	denotes	Tat
T17510	4212-4221	Positive_regulation	denotes	effective
T17511	4303-4309	Protein	denotes	MIP-1α
T17512	4311-4314	Protein	denotes	Tat
T17513	4344-4347	Protein	denotes	p65
T17514	4355-4360	Protein	denotes	NF-κB
T17515	4374-4378	Protein	denotes	CSF3
T17516	4380-4383	Protein	denotes	LTA
T17517	4385-4391	Protein	denotes	NFKBIA
T17518	4396-4400	Protein	denotes	TLR2
T17519	4447-4452	Protein	denotes	GAPDH
T17520	4457-4461	Protein	denotes	ACTB
T17521	4361-4370	Entity	denotes	enhancers
T17522	4329-4340	Binding	denotes	recruitment
T17523	4315-4324	Positive_regulation	denotes	increased
T17524	4478-4482	Protein	denotes	ChIP
T17525	4484-4487	Protein	denotes	Tat
T17526	4501-4506	Protein	denotes	NF-κB
T17527	4544-4549	Protein	denotes	GAPDH
T17528	4554-4568	Protein	denotes	ACTB promoters
T17529	4591-4608	Protein	denotes	following p65 RNA
T17530	4651-4654	Protein	denotes	Tat
T17531	4678-4681	Protein	denotes	p65
T17532	4583-4590	Binding	denotes	binding
T17533	4682-4693	Binding	denotes	interaction
T17534	4575-4579	Negative_regulation	denotes	loss
T17535	4719-4724	Protein	denotes	IκB-α
T17536	4765-4780	Protein	denotes	NF-κB enhancers
T17537	4795-4798	Protein	denotes	Tat
T17538	4848-4851	Protein	denotes	Tat
T17539	4866-4875	Protein	denotes	IκB-α RNA
T17540	4918-4921	Protein	denotes	Tat
T17541	4932-4937	Protein	denotes	IκB-α
T17542	4709-4717	Binding	denotes	findings
T17543	4709-4717	Binding	denotes	findings
T17544	4784-4791	Transcription	denotes	absence
T28179	1249-1252	Protein	denotes	Tat
T28180	1267-1270	Protein	denotes	p65
T28181	1295-1300	Protein	denotes	NF-κB
T28182	1335-1350	Protein	denotes	NF-κB enhancers
T28183	1369-1372	Protein	denotes	p65
T28184	1390-1395	Protein	denotes	IκB-α
T28185	1321-1330	Binding	denotes	occupying
T28186	1373-1384	Binding	denotes	recruitment
T28187	1355-1364	Positive_regulation	denotes	promoting
T28188	1453-1460	Protein	denotes	p3xFLAG
T28189	1461-1464	Protein	denotes	Tat
T28190	1491-1498	Protein	denotes	p3xFLAG
T28191	1499-1502	Protein	denotes	Tat
T28192	1541-1548	Protein	denotes	p65 RNA
T28193	1625-1643	Protein	denotes	siRNA p65 or siRNA
T28194	1549-1561	Negative_regulation	denotes	interference
T28195	1784-1790	Protein	denotes	MIP-1α
T28196	1837-1842	Protein	denotes	GAPDH
T28197	1770-1780	Gene_expression	denotes	expression
T28198	1770-1780	Gene_expression	denotes	expression
T28199	1757-1765	Positive_regulation	denotes	evaluate
T28200	1757-1765	Positive_regulation	denotes	evaluate
T28201	1911-1918	Protein	denotes	p3xFLAG
T28202	1919-1922	Protein	denotes	Tat
T28203	1987-2004	Protein	denotes	anti-p65 antibody
T28204	2195-2204	Protein	denotes	siRNA p65
T28205	2479-2484	Protein	denotes	IκB-α
T28206	2550-2569	Protein	denotes	anti-IκB-α antibody
R14004	T17406	T17408	themeOf	p65,recruitment
R14005	T17407	T17408	themeOf	IκB-α displacement,recruitment
R14006	T17408	T17409	themeOf	recruitment,promotes
R14007	T17416	T17427	causeOf	Tat,increased
R14008	T17416	T17428	causeOf	Tat,increased
R14009	T17416	T17429	causeOf	Tat,increased
R14010	T17416	T17430	causeOf	Tat,increased
R14011	T17416	T17431	causeOf	Tat,increased
R14012	T17417	T17422	themeOf	MIP-1α,expression
R14013	T17418	T17423	themeOf	CSF3,expression
R14014	T17419	T17424	themeOf	LTA,expression
R14015	T17420	T17425	themeOf	NFKBIA,expression
R14016	T17421	T17426	themeOf	TLR2,expression
R14017	T17422	T17427	themeOf	expression,increased
R14018	T17423	T17428	themeOf	expression,increased
R14019	T17424	T17429	themeOf	expression,increased
R14020	T17425	T17430	themeOf	expression,increased
R14021	T17426	T17431	themeOf	expression,increased
R14022	T17435	T17436	themeOf	Tat,activation
R14023	T17437	T17441	themeOf	NF-κB,expression
R14024	T17438	T17442	themeOf	GAPDH,expression
R14025	T17439	T17443	themeOf	ACTB,expression
R14026	T17440	T17444	causeOf	Tat mutants,unaffected
R14027	T17440	T17445	causeOf	Tat mutants,unaffected
R14028	T17440	T17446	causeOf	Tat mutants,unaffected
R14029	T17441	T17444	themeOf	expression,unaffected
R14030	T17442	T17445	themeOf	expression,unaffected
R14031	T17443	T17446	themeOf	expression,unaffected
R14032	T17447	T17453	causeOf	Tat,enhance
R14033	T17448	T17453	themeOf	NF-κB,enhance
R14034	T17451	T17454	themeOf	p65,interaction
R14035	T17452	T17455	themeOf	IκB-α,interaction
R14036	T17458	T17461	themeOf	MIP-1α,expression
R14037	T17459	T17463	themeOf	MIP-1α,production
R14038	T17460	T17464	causeOf	Tat,induced
R14039	T17461	T17462	themeOf	expression,increased
R14040	T17463	T17464	themeOf	production,induced
R14041	T17465	T17466	themeOf	MIP-1α,regulation
R14042	T17467	T17472	themeOf	NF-κB enhancers,predicted
R14043	T17468	T17474	themeOf	MIP-1α gene,region
R14044	T17469	T17473	themeOf	NF-κB1,predicted
R14045	T17478	T17482	themeOf	NF-κB,inducer
R14046	T17479	T17483	themeOf	MIP-1α,expression
R14047	T17480	T17484	themeOf	p65,occupancy
R14048	T17481	T17485	themeOf	NF-κB sites,occupancy
R14049	T17486	T17494	causeOf	TNF-α,induced
R14050	T17486	T17497	causeOf	TNF-α,activated
R14051	T17487	T17493	themeOf	MIP-1α,expression
R14052	T17488	T17494	themeOf	p65 recruitment,induced
R14053	T17491	T17495	themeOf	NF-κB2,occupancy
R14054	T17492	T17496	themeOf	S3C,occupancy
R14055	T17493	T17497	themeOf	expression,activated
R14056	T17495	T17498	themeOf	occupancy,affecting
R14057	T17496	T17499	themeOf	occupancy,affecting
R14058	T17505	T17510	themeOf	NF-κB1 site,effective
R14059	T17512	T17523	causeOf	Tat,increased
R14060	T17513	T17522	themeOf	p65,recruitment
R14061	T17514	T17522	themeOf	NF-κB,recruitment
R14062	T17514	T17521	partOf	NF-κB,enhancers
R14063	T17515	T17521	partOf	CSF3,enhancers
R14064	T17516	T17521	partOf	LTA,enhancers
R14065	T17517	T17521	partOf	NFKBIA,enhancers
R14066	T17518	T17521	partOf	TLR2,enhancers
R14067	T17521	T17522	Site	enhancers,recruitment
R14068	T17522	T17523	themeOf	recruitment,increased
R14069	T17529	T17532	themeOf	following p65 RNA,binding
R14070	T17530	T17533	themeOf	Tat,interaction
R14071	T17531	T17533	themeOf	p65,interaction
R14072	T17532	T17534	themeOf	binding,loss
R14073	T17535	T17542	themeOf	IκB-α,findings
R14074	T17535	T17543	themeOf	IκB-α,findings
R14075	T17536	T17543	themeOf	NF-κB enhancers,findings
R14076	T17537	T17544	themeOf	Tat,absence
R22103	T28182	T28185	themeOf	NF-κB enhancers,occupying
R22104	T28183	T28186	themeOf	p65,recruitment
R22105	T28184	T28186	themeOf	IκB-α,recruitment
R22106	T28186	T28187	themeOf	recruitment,promoting
R22107	T28192	T28194	themeOf	p65 RNA,interference
R22108	T28195	T28197	themeOf	MIP-1α,expression
R22109	T28196	T28198	themeOf	GAPDH,expression
R22110	T28197	T28199	themeOf	expression,evaluate
R22111	T28198	T28200	themeOf	expression,evaluate

test2

Id	Subject	Object	Predicate	Lexical cue	Negation	Speculation
T14963	0-3	Protein	denotes	Tat
T14964	18-21	Protein	denotes	p65
T14965	70-78	Binding	denotes	occupies
T14966	103-111	Positive_regulation	denotes	promotes
T14967	116-119	Protein	denotes	p65	true
T14968	120-131	Binding	denotes	recruitment
T14969	137-142	Protein	denotes	IκB-α
T14970	143-155	Binding	denotes	displacement
T14971	182-185	Protein	denotes	Tat
T14972	285-293	Protein	denotes	FLAG-Tat
T14973	295-316	Protein	denotes	FLAG-Tat C(22,25,27)A
T14974	320-338	Protein	denotes	FLAG-Tat R(49–57)A
T14975	359-369	Gene_expression	denotes	expression
T14976	438-441	Protein	denotes	Tat
T14977	456-465	Positive_regulation	denotes	increased
T14978	470-480	Gene_expression	denotes	expression	true
T14979	484-490	Protein	denotes	MIP-1α	true
T14980	492-496	Protein	denotes	CSF3	true
T14981	498-501	Protein	denotes	LTA	true
T14982	503-509	Protein	denotes	NFKBIA	true
T14983	514-518	Protein	denotes	TLR2	true
T14984	538-554	Protein	denotes	Tat C(22,25,27)A	true
T14985	559-572	Protein	denotes	Tat R(49–57)A	true
T14986	609-612	Protein	denotes	Tat	true
T14987	715-724	Protein	denotes	siRNA p65	true
T14988	746-749	Protein	denotes	Tat
T14989	781-789	Positive_regulation	denotes	mediated
T14990	793-796	Protein	denotes	p65
T14991	871-876	Protein	denotes	GAPDH
T14992	881-885	Protein	denotes	ACTB
T14993	918-921	Protein	denotes	Tat
T14994	1055-1058	Protein	denotes	Tat
T14995	1153-1156	Protein	denotes	Tat
T14996	1186-1197	Binding	denotes	interaction		true
T14997	1224-1227	Protein	denotes	p65		true
T14998	1232-1237	Protein	denotes	IκB-α
T14999	2833-2839	Protein	denotes	MIP-1α
T15000	2880-2883	Protein	denotes	Tat
T15001	3003-3009	Protein	denotes	MIP-1α
T15002	3010-3020	Gene_expression	denotes	expression	true
T15003	3025-3034	Positive_regulation	denotes	increased
T15004	3102-3108	Protein	denotes	MIP-1α
T15005	3109-3119	Gene_expression	denotes	production
T15006	3124-3131	Positive_regulation	denotes	induced
T15007	3163-3166	Protein	denotes	Tat
T15008	3207-3217	Regulation	denotes	regulation
T15009	3221-3227	Protein	denotes	MIP-1α
T15010	3390-3396	Protein	denotes	MIP-1α
T15011	3578-3584	Protein	denotes	MIP-1α
T15012	3625-3630	Protein	denotes	TNF-α
T15013	3677-3687	Gene_expression	denotes	expression
T15014	3698-3704	Protein	denotes	MIP-1α	true
T15015	3731-3734	Protein	denotes	p65	true
T15016	3735-3744	Binding	denotes	occupancy	true
T15017	3752-3763	Entity	denotes	NF-κB sites
T15018	3773-3778	Protein	denotes	TNF-α
T15019	3779-3788	Positive_regulation	denotes	activated
T15020	3793-3803	Gene_expression	denotes	expression		true
T15021	3807-3813	Protein	denotes	MIP-1α		true
T15022	3818-3825	Positive_regulation	denotes	induced
T15023	3830-3833	Protein	denotes	p65
T15024	3834-3845	Binding	denotes	recruitment
T15025	3853-3864	Entity	denotes	NF-κB1 site
T15026	3868-3874	Protein	denotes	MIP-1α
T15027	3983-3986	Protein	denotes	Tat
T15028	3992-4000	Positive_regulation	denotes	promoted
T15029	4005-4016	Binding	denotes	recruitment
T15030	4020-4023	Protein	denotes	p65
T15031	4031-4042	Entity	denotes	NF-κB1 site
T15032	4046-4052	Protein	denotes	MIP-1α
T15033	4244-4250	Protein	denotes	MIP-1α
T15034	4263-4271	Positive_regulation	denotes	response
T15035	4275-4280	Protein	denotes	TNF-α
T15036	4285-4288	Protein	denotes	Tat
T15037	4303-4309	Protein	denotes	MIP-1α
T15038	4311-4314	Protein	denotes	Tat
T15039	4315-4324	Positive_regulation	denotes	increased
T15040	4329-4340	Binding	denotes	recruitment
T15041	4344-4347	Protein	denotes	p65
T15042	4355-4370	Entity	denotes	NF-κB enhancers
T15043	4374-4378	Protein	denotes	CSF3
T15044	4380-4383	Protein	denotes	LTA
T15045	4385-4391	Protein	denotes	NFKBIA
T15046	4396-4400	Protein	denotes	TLR2
T15047	4415-4426	Positive_regulation	denotes	ineffective
T15048	4434-4443	Entity	denotes	promoters
T15049	4447-4452	Protein	denotes	GAPDH
T15050	4457-4461	Protein	denotes	ACTB
T15051	4484-4487	Protein	denotes	Tat
T15052	4488-4493	Binding	denotes	bound
T15053	4544-4549	Protein	denotes	GAPDH
T15054	4554-4558	Protein	denotes	ACTB
T15055	4559-4568	Entity	denotes	promoters
T15056	4575-4579	Negative_regulation	denotes	loss
T15057	4583-4590	Binding	denotes	binding
T15058	4591-4600	Positive_regulation	denotes	following
T15059	4601-4604	Protein	denotes	p65
T15060	4609-4621	Negative_regulation	denotes	interference
T15061	4651-4654	Protein	denotes	Tat
T15062	4655-4664	Binding	denotes	occupancy
T15063	4678-4681	Protein	denotes	p65
T15064	4682-4693	Binding	denotes	interaction
T15065	4719-4724	Protein	denotes	IκB-α
T15066	4729-4739	Positive_regulation	denotes	chromatin-
T15067	4739-4757	Binding	denotes	immunoprecipitated
T15068	4784-4791	Negative_regulation	denotes	absence
T15069	4795-4798	Protein	denotes	Tat
T15070	4848-4851	Protein	denotes	Tat
T15071	4856-4865	Positive_regulation	denotes	following
T15072	4866-4871	Protein	denotes	IκB-α
T15073	4876-4888	Negative_regulation	denotes	interference
T15074	4918-4921	Protein	denotes	Tat
T15075	4922-4931	Negative_regulation	denotes	displaced
T15076	4932-4937	Protein	denotes	IκB-α
T27195	1249-1252	Protein	denotes	Tat
T27196	1267-1270	Protein	denotes	p65
T27197	1321-1330	Binding	denotes	occupying
T27198	1355-1364	Positive_regulation	denotes	promoting
T27199	1369-1372	Protein	denotes	p65	true
T27200	1373-1384	Binding	denotes	recruitment
T27201	1390-1395	Protein	denotes	IκB-α		true
T27202	1396-1408	Binding	denotes	displacement		true
T27203	1461-1464	Protein	denotes	Tat		true
T27204	1474-1490	Protein	denotes	Tat C(22,25,27),		true
T27205	1499-1511	Protein	denotes	Tat R(49–57)		true
T27206	1541-1544	Protein	denotes	p65		true
T27207	1549-1561	Negative_regulation	denotes	interference		true
T27208	1609-1612	Protein	denotes	Tat
T27209	1625-1634	Protein	denotes	siRNA p65
T27210	1770-1780	Gene_expression	denotes	expression
T27211	1784-1790	Protein	denotes	MIP-1α
T27212	1796-1800	Protein	denotes	CSF3
T27213	1806-1809	Protein	denotes	LTA
T27214	1815-1821	Protein	denotes	NFKBIA
T27215	1827-1831	Protein	denotes	TLR2
T27216	1837-1842	Protein	denotes	GAPDH
T27217	1848-1852	Protein	denotes	ACTB
T27218	1919-1922	Protein	denotes	Tat
T27219	2157-2160	Protein	denotes	Tat
T27220	2195-2204	Protein	denotes	siRNA p65
T27221	2439-2442	Protein	denotes	Tat
T27222	2473-2484	Protein	denotes	siRNA IκB-α
R12000	T14963	T14965	themeOf	Tat,occupies
R12001	T14963	T14966	causeOf	Tat,promotes
R12002	T14967	T14970	themeOf	p65,displacement
R12003	T14967	T14968	themeOf	p65,recruitment
R12004	T14968	T14966	themeOf	recruitment,promotes
R12005	T14969	T14970	themeOf	IκB-α,displacement
R12006	T14970	T14966	themeOf	displacement,promotes
R12007	T14976	T14977	causeOf	Tat,increased
R12008	T14978	T14977	themeOf	expression,increased
R12009	T14979	T14978	themeOf	MIP-1α,expression
R12010	T14980	T14978	themeOf	CSF3,expression
R12011	T14981	T14978	themeOf	LTA,expression
R12012	T14982	T14978	themeOf	NFKBIA,expression
R12013	T14983	T14978	themeOf	TLR2,expression
R12014	T14990	T14989	causeOf	p65,mediated
R12015	T14995	T14996	themeOf	Tat,interaction
R12016	T14997	T14996	themeOf	p65,interaction
R12017	T14998	T14996	themeOf	IκB-α,interaction
R12018	T15001	T15002	themeOf	MIP-1α,expression
R12019	T15002	T15003	themeOf	expression,increased
R12020	T15004	T15005	themeOf	MIP-1α,production
R12021	T15005	T15006	themeOf	production,induced
R12022	T15007	T15006	causeOf	Tat,induced
R12023	T15009	T15008	themeOf	MIP-1α,regulation
R12024	T15014	T15013	themeOf	MIP-1α,expression
R12025	T15015	T15016	themeOf	p65,occupancy
R12026	T15017	T15015	partOf	NF-κB sites,p65
R12027	T15017	T15014	partOf	NF-κB sites,MIP-1α
R12028	T15017	T15013	themeOf	NF-κB sites,expression
R12029	T15017	T15016	themeOf	NF-κB sites,occupancy
R12030	T15018	T15019	causeOf	TNF-α,activated
R12031	T15018	T15022	causeOf	TNF-α,induced
R12032	T15020	T15019	themeOf	expression,activated
R12033	T15021	T15020	themeOf	MIP-1α,expression
R12034	T15023	T15024	themeOf	p65,recruitment
R12035	T15024	T15022	themeOf	recruitment,induced
R12036	T15025	T15024	themeOf	NF-κB1 site,recruitment
R12037	T15025	T15026	partOf	NF-κB1 site,MIP-1α
R12038	T15027	T15028	causeOf	Tat,promoted
R12039	T15029	T15028	themeOf	recruitment,promoted
R12040	T15030	T15029	themeOf	p65,recruitment
R12041	T15031	T15032	partOf	NF-κB1 site,MIP-1α
R12042	T15031	T15029	themeOf	NF-κB1 site,recruitment
R12043	T15038	T15047	causeOf	Tat,ineffective
R12044	T15038	T15039	causeOf	Tat,increased
R12045	T15040	T15039	themeOf	recruitment,increased
R12046	T15041	T15040	themeOf	p65,recruitment
R12047	T15042	T15044	partOf	NF-κB enhancers,LTA
R12048	T15042	T15046	partOf	NF-κB enhancers,TLR2
R12049	T15042	T15040	themeOf	NF-κB enhancers,recruitment
R12050	T15042	T15043	partOf	NF-κB enhancers,CSF3
R12051	T15042	T15045	partOf	NF-κB enhancers,NFKBIA
R12052	T15048	T15047	themeOf	promoters,ineffective
R12053	T15048	T15050	partOf	promoters,ACTB
R12054	T15048	T15049	partOf	promoters,GAPDH
R12055	T15051	T15052	themeOf	Tat,bound
R12056	T15052	T15056	themeOf	bound,loss
R12057	T15055	T15053	partOf	promoters,GAPDH
R12058	T15055	T15052	themeOf	promoters,bound
R12059	T15059	T15060	themeOf	p65,interference
R12060	T15060	T15056	causeOf	interference,loss
R12061	T15061	T15062	themeOf	Tat,occupancy
R12062	T15061	T15064	themeOf	Tat,interaction
R12063	T15063	T15064	themeOf	p65,interaction
R12064	T15069	T15068	themeOf	Tat,absence
R12065	T15072	T15073	themeOf	IκB-α,interference
R12066	T15074	T15075	causeOf	Tat,displaced
R21327	T27195	T27197	themeOf	Tat,occupying
R21328	T27195	T27198	causeOf	Tat,promoting
R21329	T27199	T27202	themeOf	p65,displacement
R21330	T27199	T27200	themeOf	p65,recruitment
R21331	T27200	T27198	themeOf	recruitment,promoting
R21332	T27201	T27202	themeOf	IκB-α,displacement
R21333	T27202	T27198	themeOf	displacement,promoting
R21334	T27206	T27207	themeOf	p65,interference
R21341	T27217	T27210	themeOf	ACTB,expression
R21335	T27211	T27210	themeOf	MIP-1α,expression
R21336	T27212	T27210	themeOf	CSF3,expression
R21337	T27213	T27210	themeOf	LTA,expression
R21338	T27214	T27210	themeOf	NFKBIA,expression
R21339	T27215	T27210	themeOf	TLR2,expression
R21340	T27216	T27210	themeOf	GAPDH,expression

bionlp-st-ge-2016-reference

Id	Subject	Object	Predicate	Lexical cue	Negation	Speculation
T15079	0-3	Protein	denotes	Tat
T15080	18-21	Protein	denotes	p65
T15081	70-78	Binding	denotes	occupies
T15082	103-111	Positive_regulation	denotes	promotes
T15083	103-111	Positive_regulation	denotes	promotes
T15084	116-119	Protein	denotes	p65
T15085	120-131	Binding	denotes	recruitment
T15086	137-142	Protein	denotes	IκB-α
T15087	143-155	Binding	denotes	displacement	true
T15088	182-185	Protein	denotes	Tat
T15089	285-293	Protein	denotes	FLAG-Tat
T15090	295-316	Protein	denotes	FLAG-Tat C(22,25,27)A
T15091	320-338	Protein	denotes	FLAG-Tat R(49–57)A
T15092	438-441	Protein	denotes	Tat
T15093	456-465	Positive_regulation	denotes	increased
T15094	456-465	Positive_regulation	denotes	increased
T15095	456-465	Positive_regulation	denotes	increased
T15096	456-465	Positive_regulation	denotes	increased
T15097	456-465	Positive_regulation	denotes	increased
T15098	470-480	Gene_expression	denotes	expression
T15099	470-480	Gene_expression	denotes	expression
T15100	470-480	Gene_expression	denotes	expression
T15101	470-480	Gene_expression	denotes	expression
T15102	470-480	Gene_expression	denotes	expression
T15103	484-490	Protein	denotes	MIP-1α
T15104	492-496	Protein	denotes	CSF3
T15105	498-501	Protein	denotes	LTA
T15106	503-509	Protein	denotes	NFKBIA
T15107	514-518	Protein	denotes	TLR2
T15108	538-554	Protein	denotes	Tat C(22,25,27)A
T15109	559-572	Protein	denotes	Tat R(49–57)A
T15110	578-589	Positive_regulation	denotes	ineffective	true
T15111	578-589	Positive_regulation	denotes	ineffective	true
T15112	578-589	Positive_regulation	denotes	ineffective	true
T15113	578-589	Positive_regulation	denotes	ineffective	true
T15114	578-589	Positive_regulation	denotes	ineffective	true
T15115	578-589	Positive_regulation	denotes	ineffective	true
T15116	578-589	Positive_regulation	denotes	ineffective	true
T15117	578-589	Positive_regulation	denotes	ineffective	true
T15118	578-589	Positive_regulation	denotes	ineffective	true
T15119	578-589	Positive_regulation	denotes	ineffective	true
T15120	609-612	Protein	denotes	Tat
T15121	715-724	Protein	denotes	siRNA p65
T15122	746-749	Protein	denotes	Tat
T15123	793-796	Protein	denotes	p65
T15124	871-876	Protein	denotes	GAPDH
T15125	881-885	Protein	denotes	ACTB
T15126	918-921	Protein	denotes	Tat
T15127	1055-1058	Protein	denotes	Tat
T15128	1153-1156	Protein	denotes	Tat
T15129	1186-1197	Binding	denotes	interaction
T15130	1224-1227	Protein	denotes	p65
T15131	1232-1237	Protein	denotes	IκB-α
T15132	2833-2839	Protein	denotes	MIP-1α
T15133	2862-2871	Positive_regulation	denotes	activated
T15134	2880-2883	Protein	denotes	Tat
T15135	3003-3009	Protein	denotes	MIP-1α
T15136	3010-3020	Gene_expression	denotes	expression
T15137	3025-3034	Positive_regulation	denotes	increased
T15138	3102-3108	Protein	denotes	MIP-1α
T15139	3109-3119	Gene_expression	denotes	production
T15140	3124-3131	Positive_regulation	denotes	induced
T15141	3163-3166	Protein	denotes	Tat
T15142	3191-3206	Transcription	denotes	transcriptional
T15145	3390-3396	Protein	denotes	MIP-1α
T15146	3578-3584	Protein	denotes	MIP-1α
T15147	3625-3630	Protein	denotes	TNF-α
T15148	3677-3687	Gene_expression	denotes	expression		true
T15149	3698-3704	Protein	denotes	MIP-1α
T15150	3731-3734	Protein	denotes	p65
T15151	3735-3744	Binding	denotes	occupancy		true
T15152	3752-3763	Entity	denotes	NF-κB sites
T15153	3773-3778	Protein	denotes	TNF-α
T15154	3779-3788	Positive_regulation	denotes	activated
T15155	3793-3803	Gene_expression	denotes	expression
T15156	3807-3813	Protein	denotes	MIP-1α
T15157	3818-3825	Positive_regulation	denotes	induced
T15158	3830-3833	Protein	denotes	p65
T15159	3834-3845	Binding	denotes	recruitment
T15160	3853-3864	Entity	denotes	NF-κB1 site
T15161	3868-3874	Protein	denotes	MIP-1α
T15162	3883-3892	Positive_regulation	denotes	affecting	true
T15163	3897-3906	Binding	denotes	occupancy
T15164	3983-3986	Protein	denotes	Tat
T15165	3992-4000	Positive_regulation	denotes	promoted
T15166	4005-4016	Binding	denotes	recruitment
T15167	4020-4023	Protein	denotes	p65
T15168	4031-4042	Entity	denotes	NF-κB1 site
T15169	4046-4052	Protein	denotes	MIP-1α
T15170	4244-4250	Protein	denotes	MIP-1α
T15171	4275-4280	Protein	denotes	TNF-α
T15172	4285-4288	Protein	denotes	Tat
T15173	4303-4309	Protein	denotes	MIP-1α
T15174	4311-4314	Protein	denotes	Tat
T15175	4315-4324	Positive_regulation	denotes	increased
T15176	4315-4324	Positive_regulation	denotes	increased
T15177	4315-4324	Positive_regulation	denotes	increased
T15178	4315-4324	Positive_regulation	denotes	increased
T15179	4329-4340	Binding	denotes	recruitment
T15180	4329-4340	Binding	denotes	recruitment
T15181	4329-4340	Binding	denotes	recruitment
T15182	4329-4340	Binding	denotes	recruitment
T15183	4344-4347	Protein	denotes	p65
T15184	4355-4370	Entity	denotes	NF-κB enhancers
T15185	4374-4378	Protein	denotes	CSF3
T15186	4380-4383	Protein	denotes	LTA
T15187	4385-4391	Protein	denotes	NFKBIA
T15188	4396-4400	Protein	denotes	TLR2
T15189	4415-4426	Positive_regulation	denotes	ineffective	true
T15190	4415-4426	Positive_regulation	denotes	ineffective	true
T15191	4434-4443	Entity	denotes	promoters
T15192	4447-4452	Protein	denotes	GAPDH
T15193	4457-4461	Protein	denotes	ACTB
T15194	4484-4487	Protein	denotes	Tat
T15195	4488-4493	Binding	denotes	bound	true
T15196	4544-4549	Protein	denotes	GAPDH
T15197	4554-4558	Protein	denotes	ACTB
T15198	4559-4568	Entity	denotes	promoters
T15199	4575-4579	Negative_regulation	denotes	loss
T15200	4601-4604	Protein	denotes	p65
T15201	4609-4621	Negative_regulation	denotes	interference
T15202	4651-4654	Protein	denotes	Tat
T15203	4655-4664	Binding	denotes	occupancy
T15204	4674-4677	Positive_regulation	denotes	via		true
T15205	4678-4681	Protein	denotes	p65
T15206	4682-4693	Binding	denotes	interaction		true
T15207	4719-4724	Protein	denotes	IκB-α
T15208	4729-4757	Binding	denotes	chromatin-immunoprecipitated
T15209	4795-4798	Protein	denotes	Tat
T15210	4825-4832	Negative_regulation	denotes	removed
T15211	4825-4832	Negative_regulation	denotes	removed
T15212	4848-4851	Protein	denotes	Tat
T15213	4866-4871	Protein	denotes	IκB-α
T15214	4876-4888	Negative_regulation	denotes	interference
T15215	4918-4921	Protein	denotes	Tat
T15216	4922-4931	Negative_regulation	denotes	displaced
T15217	4932-4937	Protein	denotes	IκB-α
T15218	4938-4942	Binding	denotes	from
T27249	1815-1821	Protein	denotes	NFKBIA
T27250	1827-1831	Protein	denotes	TLR2
T27251	1837-1842	Protein	denotes	GAPDH
T27252	1848-1852	Protein	denotes	ACTB
T27253	1919-1922	Protein	denotes	Tat
T27254	2157-2160	Protein	denotes	Tat
T27255	2195-2204	Protein	denotes	siRNA p65
T27256	2439-2442	Protein	denotes	Tat
T27257	2473-2484	Protein	denotes	siRNA IκB-α
T27223	1249-1252	Protein	denotes	Tat
T27224	1267-1270	Protein	denotes	p65
T27225	1321-1330	Binding	denotes	occupying
T27226	1355-1364	Positive_regulation	denotes	promoting
T27227	1355-1364	Positive_regulation	denotes	promoting
T27228	1369-1372	Protein	denotes	p65
T27229	1373-1384	Binding	denotes	recruitment
T27230	1390-1395	Protein	denotes	IκB-α
T27231	1396-1408	Binding	denotes	displacement	true
T27232	1461-1464	Protein	denotes	Tat
T27233	1474-1489	Protein	denotes	Tat C(22,25,27)
T27234	1499-1511	Protein	denotes	Tat R(49–57)
T27235	1541-1544	Protein	denotes	p65
T27236	1549-1561	Negative_regulation	denotes	interference
T27237	1609-1612	Protein	denotes	Tat
T27238	1625-1634	Protein	denotes	siRNA p65
T27239	1770-1780	Gene_expression	denotes	expression		true
T27240	1770-1780	Gene_expression	denotes	expression		true
T27241	1770-1780	Gene_expression	denotes	expression		true
T27242	1770-1780	Gene_expression	denotes	expression		true
T27243	1770-1780	Gene_expression	denotes	expression		true
T27244	1770-1780	Gene_expression	denotes	expression		true
T27245	1770-1780	Gene_expression	denotes	expression		true
T27246	1784-1790	Protein	denotes	MIP-1α
T27247	1796-1800	Protein	denotes	CSF3
T27248	1806-1809	Protein	denotes	LTA
T15143	3207-3217	Regulation	denotes	regulation
T15144	3221-3227	Protein	denotes	MIP-1α
R12067	T15079	T15083	causeOf	Tat,promotes
R12068	T15079	T15082	causeOf	Tat,promotes
R12070	T15084	T15085	themeOf	p65,recruitment
R12071	T15084	T15087	themeOf	p65,displacement
R12072	T15085	T15083	themeOf	recruitment,promotes
R12073	T15086	T15087	themeOf	IκB-α,displacement
R12074	T15087	T15082	themeOf	displacement,promotes
R12075	T15092	T15097	causeOf	Tat,increased
R12076	T15092	T15095	causeOf	Tat,increased
R12077	T15092	T15094	causeOf	Tat,increased
R12078	T15092	T15093	causeOf	Tat,increased
R12079	T15092	T15096	causeOf	Tat,increased
R12080	T15098	T15095	themeOf	expression,increased
R12081	T15098	T15113	themeOf	expression,ineffective
R12082	T15098	T15115	themeOf	expression,ineffective
R12083	T15099	T15093	themeOf	expression,increased
R12084	T15099	T15118	themeOf	expression,ineffective
R12085	T15099	T15112	themeOf	expression,ineffective
R12086	T15100	T15096	themeOf	expression,increased
R12087	T15100	T15114	themeOf	expression,ineffective
R12088	T15100	T15111	themeOf	expression,ineffective
R12089	T15101	T15094	themeOf	expression,increased
R12090	T15101	T15116	themeOf	expression,ineffective
R12091	T15101	T15117	themeOf	expression,ineffective
R12092	T15102	T15097	themeOf	expression,increased
R12093	T15102	T15110	themeOf	expression,ineffective
R12094	T15102	T15119	themeOf	expression,ineffective
R12095	T15103	T15102	themeOf	MIP-1α,expression
R12096	T15104	T15098	themeOf	CSF3,expression
R12097	T15105	T15101	themeOf	LTA,expression
R12098	T15106	T15099	themeOf	NFKBIA,expression
R12099	T15107	T15100	themeOf	TLR2,expression
R12100	T15108	T15110	causeOf	"Tat C(22,25,27)A",ineffective
R12101	T15108	T15113	causeOf	"Tat C(22,25,27)A",ineffective
R12102	T15108	T15116	causeOf	"Tat C(22,25,27)A",ineffective
R12103	T15108	T15118	causeOf	"Tat C(22,25,27)A",ineffective
R12104	T15108	T15114	causeOf	"Tat C(22,25,27)A",ineffective
R12105	T15109	T15119	causeOf	Tat R(49–57)A,ineffective
R12106	T15109	T15115	causeOf	Tat R(49–57)A,ineffective
R12107	T15109	T15117	causeOf	Tat R(49–57)A,ineffective
R12108	T15109	T15112	causeOf	Tat R(49–57)A,ineffective
R12109	T15109	T15111	causeOf	Tat R(49–57)A,ineffective
R12110	T15128	T15129	themeOf	Tat,interaction
R12111	T15130	T15129	themeOf	p65,interaction
R12112	T15132	T15133	themeOf	MIP-1α,activated
R12113	T15134	T15133	causeOf	Tat,activated
R12114	T15135	T15136	themeOf	MIP-1α,expression
R12115	T15136	T15137	themeOf	expression,increased
R12116	T15138	T15139	themeOf	MIP-1α,production
R12141	T15174	T15190	causeOf	Tat,ineffective
R12142	T15174	T15189	causeOf	Tat,ineffective
R12145	T15174	T15176	causeOf	Tat,increased
R12146	T15174	T15177	causeOf	Tat,increased
R12147	T15179	T15176	themeOf	recruitment,increased
R12148	T15180	T15175	themeOf	recruitment,increased
R12149	T15181	T15177	themeOf	recruitment,increased
R12150	T15182	T15178	themeOf	recruitment,increased
R12151	T15183	T15181	themeOf	p65,recruitment
R12152	T15183	T15180	themeOf	p65,recruitment
R12153	T15183	T15182	themeOf	p65,recruitment
R12154	T15183	T15179	themeOf	p65,recruitment
R12155	T15184	T15181	themeOf	NF-κB enhancers,recruitment
R12156	T15184	T15188	partOf	NF-κB enhancers,TLR2
R12157	T15184	T15180	themeOf	NF-κB enhancers,recruitment
R12158	T15184	T15185	partOf	NF-κB enhancers,CSF3
R12159	T15184	T15182	themeOf	NF-κB enhancers,recruitment
R12160	T15184	T15186	partOf	NF-κB enhancers,LTA
R12161	T15184	T15179	themeOf	NF-κB enhancers,recruitment
R12162	T15184	T15187	partOf	NF-κB enhancers,NFKBIA
R12163	T15191	T15190	themeOf	promoters,ineffective
R12164	T15191	T15192	partOf	promoters,GAPDH
R12165	T15191	T15189	themeOf	promoters,ineffective
R12166	T15191	T15193	partOf	promoters,ACTB
R12167	T15194	T15195	themeOf	Tat,bound
R12168	T15195	T15199	themeOf	bound,loss
R12169	T15198	T15195	themeOf	promoters,bound
R12170	T15198	T15196	partOf	promoters,GAPDH
R12171	T15200	T15201	themeOf	p65,interference
R12172	T15201	T15199	causeOf	interference,loss
R12173	T15202	T15203	themeOf	Tat,occupancy
R12174	T15202	T15206	themeOf	Tat,interaction
R12175	T15203	T15204	themeOf	occupancy,via
R12176	T15205	T15206	themeOf	p65,interaction
R12177	T15206	T15204	causeOf	interaction,via
R12178	T15207	T15208	themeOf	IκB-α,chromatin-immunoprecipitated
R12179	T15208	T15210	themeOf	chromatin-immunoprecipitated,removed
R12180	T15208	T15211	themeOf	chromatin-immunoprecipitated,removed
R12181	T15212	T15210	causeOf	Tat,removed
R12182	T15213	T15214	themeOf	IκB-α,interference
R12183	T15214	T15211	causeOf	interference,removed
R12184	T15215	T15216	causeOf	Tat,displaced
R12185	T15217	T15218	themeOf	IκB-α,from
R12186	T15218	T15216	themeOf	from,displaced
R21342	T27223	T27225	themeOf	Tat,occupying
R21343	T27223	T27227	causeOf	Tat,promoting
R21344	T27223	T27226	causeOf	Tat,promoting
R21345	T27228	T27229	themeOf	p65,recruitment
R21346	T27228	T27231	themeOf	p65,displacement
R21347	T27229	T27227	themeOf	recruitment,promoting
R21348	T27230	T27231	themeOf	IκB-α,displacement
R21349	T27231	T27226	themeOf	displacement,promoting
R21350	T27235	T27236	themeOf	p65,interference
R21351	T27246	T27241	themeOf	MIP-1α,expression
R21352	T27247	T27240	themeOf	CSF3,expression
R21353	T27248	T27239	themeOf	LTA,expression
R21354	T27249	T27242	themeOf	NFKBIA,expression
R21355	T27250	T27244	themeOf	TLR2,expression
R21356	T27251	T27243	themeOf	GAPDH,expression
R21357	T27252	T27245	themeOf	ACTB,expression
R12069	T15079	T15081	themeOf	Tat,occupies
R12117	T15139	T15140	themeOf	production,induced
R12118	T15141	T15140	causeOf	Tat,induced
R12119	T15142	T15143	themeOf	transcriptional,regulation
R12120	T15144	T15142	themeOf	MIP-1α,transcriptional
R12121	T15149	T15148	themeOf	MIP-1α,expression
R12122	T15150	T15151	themeOf	p65,occupancy
R12123	T15152	T15151	themeOf	NF-κB sites,occupancy
R12124	T15152	T15149	partOf	NF-κB sites,MIP-1α
R12125	T15153	T15154	causeOf	TNF-α,activated
R12126	T15153	T15157	causeOf	TNF-α,induced
R12127	T15153	T15162	causeOf	TNF-α,affecting
R12128	T15155	T15154	themeOf	expression,activated
R12129	T15156	T15155	themeOf	MIP-1α,expression
R12130	T15158	T15159	themeOf	p65,recruitment
R12131	T15158	T15163	themeOf	p65,occupancy
R12132	T15159	T15157	themeOf	recruitment,induced
R12133	T15160	T15159	themeOf	NF-κB1 site,recruitment
R12134	T15160	T15161	partOf	NF-κB1 site,MIP-1α
R12135	T15163	T15162	themeOf	occupancy,affecting
R12136	T15164	T15165	causeOf	Tat,promoted
R12137	T15166	T15165	themeOf	recruitment,promoted
R12138	T15167	T15166	themeOf	p65,recruitment
R12139	T15168	T15166	themeOf	NF-κB1 site,recruitment
R12140	T15168	T15169	partOf	NF-κB1 site,MIP-1α
R12143	T15174	T15175	causeOf	Tat,increased
R12144	T15174	T15178	causeOf	Tat,increased

bionlp-st-ge-2016-uniprot

Id	Subject	Object	Predicate	Lexical cue
T15833	0-3	P04605	denotes	Tat
T15834	0-3	P04610	denotes	Tat
T15835	0-3	Q8UMQ1	denotes	Tat
T15836	0-3	P04608	denotes	Tat
T15837	18-21	Q04206	denotes	p65
T15838	18-21	P21579	denotes	p65
T15839	116-119	Q04206	denotes	p65
T15840	116-119	P21579	denotes	p65
T15841	182-185	P04610	denotes	Tat
T15842	182-185	Q8UMQ1	denotes	Tat
T15843	182-185	P04608	denotes	Tat
T15844	182-185	P04605	denotes	Tat
T15845	290-293	P04610	denotes	Tat
T15846	290-293	Q8UMQ1	denotes	Tat
T15847	290-293	P04608	denotes	Tat
T15848	290-293	P04605	denotes	Tat
T15849	300-303	Q8UMQ1	denotes	Tat
T15850	300-303	P04605	denotes	Tat
T15851	300-303	P04610	denotes	Tat
T15852	300-303	P04608	denotes	Tat
T15853	325-328	P04608	denotes	Tat
T15854	325-328	P04605	denotes	Tat
T15855	325-328	P04610	denotes	Tat
T15856	325-328	Q8UMQ1	denotes	Tat
T15857	438-441	P04610	denotes	Tat
T15858	438-441	Q8UMQ1	denotes	Tat
T15859	438-441	P04608	denotes	Tat
T15860	438-441	P04605	denotes	Tat
T15861	484-490	P10147	denotes	MIP-1α
T15862	492-496	P09919	denotes	CSF3
T15863	498-501	P01374	denotes	LTA
T15864	503-509	P25963	denotes	NFKBIA
T15865	514-518	O60603	denotes	TLR2
T15866	538-541	P04610	denotes	Tat
T15867	538-541	P04605	denotes	Tat
T15868	538-541	P04608	denotes	Tat
T15869	538-541	Q8UMQ1	denotes	Tat
T15870	559-562	P04610	denotes	Tat
T15871	559-562	P04605	denotes	Tat
T15872	559-562	P04608	denotes	Tat
T15873	559-562	Q8UMQ1	denotes	Tat
T15874	609-612	P04605	denotes	Tat
T15875	609-612	P04608	denotes	Tat
T15876	609-612	P04610	denotes	Tat
T15877	609-612	Q8UMQ1	denotes	Tat
T15878	721-724	Q04206	denotes	p65
T15879	721-724	P21579	denotes	p65
T15880	746-749	Q8UMQ1	denotes	Tat
T15881	746-749	P04605	denotes	Tat
T15882	746-749	P04610	denotes	Tat
T15883	746-749	P04608	denotes	Tat
T15884	793-796	P21579	denotes	p65
T15885	793-796	Q04206	denotes	p65
T15886	871-876	P04406	denotes	GAPDH
T15887	881-885	P60709	denotes	ACTB
T15888	918-921	P04610	denotes	Tat
T15889	918-921	Q8UMQ1	denotes	Tat
T15890	918-921	P04608	denotes	Tat
T15891	918-921	P04605	denotes	Tat
T15892	1055-1058	Q8UMQ1	denotes	Tat
T15893	1055-1058	P04610	denotes	Tat
T15894	1055-1058	P04605	denotes	Tat
T15895	1055-1058	P04608	denotes	Tat
T15896	1153-1156	Q8UMQ1	denotes	Tat
T15897	1153-1156	P04605	denotes	Tat
T15898	1153-1156	P04608	denotes	Tat
T15899	1153-1156	P04610	denotes	Tat
T15900	1224-1227	P21579	denotes	p65
T15901	1224-1227	Q04206	denotes	p65
T15902	2833-2839	P10147	denotes	MIP-1α
T15903	2880-2883	P04610	denotes	Tat
T15904	2880-2883	P04608	denotes	Tat
T15905	2880-2883	P04605	denotes	Tat
T15906	2880-2883	Q8UMQ1	denotes	Tat
T15907	3003-3009	P10147	denotes	MIP-1α
T15908	3102-3108	P10147	denotes	MIP-1α
T15909	3163-3166	P04610	denotes	Tat
T15910	3163-3166	Q8UMQ1	denotes	Tat
T15911	3163-3166	P04608	denotes	Tat
T15912	3163-3166	P04605	denotes	Tat
T15913	3221-3227	P10147	denotes	MIP-1α
T15914	3390-3396	P10147	denotes	MIP-1α
T15915	3578-3584	P10147	denotes	MIP-1α
T15916	3625-3628	P01375	denotes	TNF
T15917	3625-3630	P01375	denotes	TNF-α
T15918	3698-3704	P10147	denotes	MIP-1α
T15919	3731-3734	Q04206	denotes	p65
T15920	3731-3734	P21579	denotes	p65
T15921	3773-3776	P01375	denotes	TNF
T15922	3773-3778	P01375	denotes	TNF-α
T15923	3807-3813	P10147	denotes	MIP-1α
T15924	3830-3833	Q04206	denotes	p65
T15925	3830-3833	P21579	denotes	p65
T15926	3868-3874	P10147	denotes	MIP-1α
T15927	3983-3986	P04608	denotes	Tat
T15928	3983-3986	Q8UMQ1	denotes	Tat
T15929	3983-3986	P04610	denotes	Tat
T15930	3983-3986	P04605	denotes	Tat
T15931	4020-4023	Q04206	denotes	p65
T15932	4020-4023	P21579	denotes	p65
T15933	4046-4052	P10147	denotes	MIP-1α
T15934	4244-4250	P10147	denotes	MIP-1α
T15935	4275-4278	P01375	denotes	TNF
T15936	4275-4280	P01375	denotes	TNF-α
T15937	4285-4288	P04610	denotes	Tat
T15938	4285-4288	P04608	denotes	Tat
T15939	4285-4288	Q8UMQ1	denotes	Tat
T15940	4285-4288	P04605	denotes	Tat
T15941	4303-4309	P10147	denotes	MIP-1α
T15942	4311-4314	P04608	denotes	Tat
T15943	4311-4314	P04610	denotes	Tat
T15944	4311-4314	Q8UMQ1	denotes	Tat
T15945	4311-4314	P04605	denotes	Tat
T15946	4344-4347	P21579	denotes	p65
T15947	4344-4347	Q04206	denotes	p65
T15948	4374-4378	P09919	denotes	CSF3
T15949	4380-4383	P01374	denotes	LTA
T15950	4385-4391	P25963	denotes	NFKBIA
T15951	4396-4400	O60603	denotes	TLR2
T15952	4447-4452	P04406	denotes	GAPDH
T15953	4457-4461	P60709	denotes	ACTB
T15954	4484-4487	P04610	denotes	Tat
T15955	4484-4487	P04608	denotes	Tat
T15956	4484-4487	P04605	denotes	Tat
T15957	4484-4487	Q8UMQ1	denotes	Tat
T15958	4544-4549	P04406	denotes	GAPDH
T15959	4554-4558	P60709	denotes	ACTB
T15960	4601-4604	P21579	denotes	p65
T15961	4601-4604	Q04206	denotes	p65
T15962	4651-4654	P04610	denotes	Tat
T15963	4651-4654	P04605	denotes	Tat
T15964	4651-4654	P04608	denotes	Tat
T15965	4651-4654	Q8UMQ1	denotes	Tat
T15966	4678-4681	P21579	denotes	p65
T15967	4678-4681	Q04206	denotes	p65
T15968	4795-4798	P04610	denotes	Tat
T15969	4795-4798	P04608	denotes	Tat
T15970	4795-4798	P04605	denotes	Tat
T15971	4795-4798	Q8UMQ1	denotes	Tat
T15972	4848-4851	P04610	denotes	Tat
T15973	4848-4851	P04605	denotes	Tat
T15974	4848-4851	P04608	denotes	Tat
T15975	4848-4851	Q8UMQ1	denotes	Tat
T15976	4918-4921	P04605	denotes	Tat
T15977	4918-4921	P04608	denotes	Tat
T15978	4918-4921	P04610	denotes	Tat
T15979	4918-4921	Q8UMQ1	denotes	Tat
T27570	1249-1252	P04608	denotes	Tat
T27571	1249-1252	P04610	denotes	Tat
T27572	1249-1252	Q8UMQ1	denotes	Tat
T27573	1249-1252	P04605	denotes	Tat
T27574	1267-1270	Q04206	denotes	p65
T27575	1267-1270	P21579	denotes	p65
T27600	1806-1809	P01374	denotes	LTA
T27601	1815-1821	P25963	denotes	NFKBIA
T27602	1827-1831	O60603	denotes	TLR2
T27603	1837-1842	P04406	denotes	GAPDH
T27604	1848-1852	P60709	denotes	ACTB
T27605	1919-1922	P04610	denotes	Tat
T27606	1919-1922	P04605	denotes	Tat
T27607	1919-1922	P04608	denotes	Tat
T27608	1919-1922	Q8UMQ1	denotes	Tat
T27609	1992-1995	Q04206	denotes	p65
T27610	1992-1995	P21579	denotes	p65
T27611	2157-2160	Q8UMQ1	denotes	Tat
T27612	2157-2160	P04605	denotes	Tat
T27613	2157-2160	P04610	denotes	Tat
T27614	2157-2160	P04608	denotes	Tat
T27615	2201-2204	Q04206	denotes	p65
T27616	2201-2204	P21579	denotes	p65
T27617	2439-2442	P04610	denotes	Tat
T27618	2439-2442	Q8UMQ1	denotes	Tat
T27619	2439-2442	P04608	denotes	Tat
T27620	2439-2442	P04605	denotes	Tat
T27576	1369-1372	Q04206	denotes	p65
T27577	1369-1372	P21579	denotes	p65
T27578	1461-1464	P04610	denotes	Tat
T27579	1461-1464	P04608	denotes	Tat
T27580	1461-1464	P04605	denotes	Tat
T27581	1461-1464	Q8UMQ1	denotes	Tat
T27582	1474-1477	Q8UMQ1	denotes	Tat
T27583	1474-1477	P04610	denotes	Tat
T27584	1474-1477	P04608	denotes	Tat
T27585	1474-1477	P04605	denotes	Tat
T27586	1499-1502	P04610	denotes	Tat
T27587	1499-1502	P04605	denotes	Tat
T27588	1499-1502	P04608	denotes	Tat
T27589	1499-1502	Q8UMQ1	denotes	Tat
T27590	1541-1544	P21579	denotes	p65
T27591	1541-1544	Q04206	denotes	p65
T27592	1609-1612	P04608	denotes	Tat
T27593	1609-1612	P04610	denotes	Tat
T27594	1609-1612	P04605	denotes	Tat
T27595	1609-1612	Q8UMQ1	denotes	Tat
T27596	1631-1634	P21579	denotes	p65
T27597	1631-1634	Q04206	denotes	p65
T27598	1784-1790	P10147	denotes	MIP-1α
T27599	1796-1800	P09919	denotes	CSF3

PMC:3333881 / 30145-35098 JSONTXT

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PMC:3333881 / 30145-35098 JSON TXT