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PMC:3333881 / 2971-3186 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-11533489-77584407 114-116 11533489 denotes 12
22187158-12419806-77584408 117-119 12419806 denotes 21
22187158-15152190-77584409 120-122 15152190 denotes 22

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1737 2-4 IN denotes by
T1738 5-12 NN denotes histone
T1739 13-26 NN denotes deacetylase-3
T1740 27-29 CC denotes or
T1741 30-35 NN denotes SIRT1
T1742 35-36 -COMMA- denotes ,
T1743 37-39 CC denotes or
T1744 40-51 NN denotes acetylation
T1745 52-54 IN denotes of
T1746 55-58 NN denotes p65
T1747 59-61 IN denotes at
T1748 62-68 NN denotes Lys122
T1749 69-72 CC denotes and
T1750 73-79 NN denotes Lys123
T1751 80-93 VB denotes down-regulate
T1752 94-97 DT denotes the
T1753 98-103 NN denotes NF-κB
T1754 104-112 NN denotes activity
T1755 113-114 -LRB- denotes (
T1756 114-122 CD denotes 12,21,22
T1757 122-123 -RRB- denotes )
T1758 125-135 JJ denotes Persistent
T1759 136-146 NN denotes activation
T1760 147-149 IN denotes of
T1761 150-155 NN denotes NF-κB
T1762 156-162 VB denotes occurs
T1763 163-165 IN denotes in
T1764 166-171 JJ denotes human
T1765 172-188 NN denotes immunodeficiency
T1766 189-196 NN denotes virus-1
T1767 197-198 -LRB- denotes (
T1768 198-203 NN denotes HIV-1
T1769 203-204 -RRB- denotes )
T1770 204-213 JJ denotes -infected
R1562 T1739 T1740 arg1Of deacetylase-3,or
R1563 T1740 T1737 arg2Of or,by
R1564 T1740 T1738 arg1Of or,histone
R1565 T1741 T1740 arg2Of SIRT1,or
R1566 T1743 T1742 arg1Of or,","
R1567 T1743 T1751 arg1Of or,down-regulate
R1568 T1744 T1743 arg2Of acetylation,or
R1569 T1744 T1745 arg1Of acetylation,of
R1570 T1744 T1747 arg1Of acetylation,at
R1571 T1746 T1745 arg2Of p65,of
R1572 T1748 T1749 arg1Of Lys122,and
R1573 T1749 T1747 arg2Of and,at
R1574 T1750 T1749 arg2Of Lys123,and
R1575 T1754 T1751 arg2Of activity,down-regulate
R1576 T1754 T1752 arg1Of activity,the
R1577 T1754 T1753 arg1Of activity,NF-κB
R1578 T1754 T1755 arg1Of activity,(
R1579 T1756 T1755 arg2Of "12,21,22",(
R1580 T1757 T1755 arg3Of ),(
R1581 T1759 T1758 arg1Of activation,Persistent
R1582 T1759 T1760 arg1Of activation,of
R1583 T1759 T1762 arg1Of activation,occurs
R1585 T1761 T1760 arg2Of NF-κB,of
R1586 T1762 T1763 arg1Of occurs,in
R1588 T1766 T1764 arg1Of virus-1,human
R1589 T1766 T1765 arg1Of virus-1,immunodeficiency
R1590 T1766 T1767 arg1Of virus-1,(
R1591 T1768 T1767 arg2Of HIV-1,(
R1592 T1769 T1767 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2624 2-4 IN denotes by
T2625 5-12 NN denotes histone
T2626 13-26 JJ denotes deacetylase-3
T2627 27-29 CC denotes or
T2628 30-35 CD denotes SIRT1
T2629 35-36 , denotes ,
T2630 37-39 CC denotes or
T2631 40-51 NN denotes acetylation
T2632 52-54 IN denotes of
T2633 55-58 NNS denotes p65
T2634 59-61 IN denotes at
T2635 62-68 NNP denotes Lys122
T2636 69-72 CC denotes and
T2637 73-79 NNP denotes Lys123
T2638 80-93 VBP denotes down-regulate
T2639 94-97 DT denotes the
T2640 98-103 NN denotes NF-κB
T2641 104-112 NN denotes activity
T2642 113-114 -LRB- denotes (
T2643 114-122 CD denotes 12,21,22
T2644 122-123 -RRB- denotes )
T2645 123-124 . denotes .
T2646 125-135 JJ denotes Persistent
T2647 136-146 NN denotes activation
T2648 147-149 IN denotes of
T2649 150-155 JJ denotes NF-κB
T2650 156-162 VBZ denotes occurs
T2651 163-165 IN denotes in
T2652 166-171 JJ denotes human
T2653 172-188 NN denotes immunodeficiency
T2654 189-196 JJ denotes virus-1
T2655 197-198 -LRB- denotes (
T2656 198-203 NNP denotes HIV-1
T2657 203-204 -RRB- denotes )
T2658 204-205 : denotes -
T2659 205-213 VBN denotes infected
R2333 T2625 T2624 pobj histone,by
R2336 T2627 T2626 cc or,deacetylase-3
R2337 T2628 T2626 conj SIRT1,deacetylase-3
R2338 T2629 T2628 punct ",",SIRT1
R2340 T2630 T2628 cc or,SIRT1
R2341 T2631 T2628 conj acetylation,SIRT1
R2342 T2632 T2631 prep of,acetylation
R2343 T2633 T2632 pobj p65,of
R2345 T2634 T2631 prep at,acetylation
R2346 T2635 T2634 pobj Lys122,at
R2347 T2636 T2635 cc and,Lys122
R2349 T2637 T2635 conj Lys123,Lys122
R2350 T2638 T2638 ROOT down-regulate,down-regulate
R2351 T2639 T2641 det the,activity
R2352 T2640 T2641 compound NF-κB,activity
R2353 T2641 T2638 dobj activity,down-regulate
R2355 T2642 T2641 punct (,activity
R2356 T2643 T2641 appos "12,21,22",activity
R2357 T2644 T2641 punct ),activity
R2359 T2645 T2638 punct .,down-regulate
R2360 T2646 T2647 amod Persistent,activation
R2361 T2647 T2650 nsubj activation,occurs
R2363 T2648 T2647 prep of,activation
R2364 T2649 T2648 pobj NF-κB,of
R2366 T2650 T2650 ROOT occurs,occurs
R2368 T2651 T2650 prep in,occurs
R2369 T2652 T2653 amod human,immunodeficiency
R2370 T2653 T2651 pobj immunodeficiency,in
R2372 T2654 T2656 amod virus-1,HIV-1
R2373 T2655 T2656 punct (,HIV-1
R2374 T2656 T2650 npadvmod HIV-1,occurs
R2376 T2657 T2656 punct ),HIV-1
R2377 T2658 T2659 punct -,infected

GO-BP

Id Subject Object Predicate Lexical cue
T3173 136-155 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB

ICD10

Id Subject Object Predicate Lexical cue
T3222 172-188 http://purl.bioontology.org/ontology/ICD10/D84.9 denotes immunodeficiency

events-check-again

Id Subject Object Predicate Lexical cue
T4112 5-26 Protein denotes histone deacetylase-3
T4113 30-35 Protein denotes SIRT1
T4114 40-51 Deacetylation denotes acetylation
T4115 40-51 Deacetylation denotes acetylation
T4116 55-58 Protein denotes p65
T4117 62-68 Entity denotes Lys122
T4118 73-79 Entity denotes Lys123
R3957 T4117 T4114 themeOf Lys122,acetylation
R3959 T4117 T4116 partOf Lys122,p65
R3967 T4118 T4115 themeOf Lys123,acetylation
R3969 T4118 T4116 partOf Lys123,p65

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4257 5-26 Protein denotes histone deacetylase-3
T4258 30-35 Protein denotes SIRT1
T4259 55-58 Protein denotes p65
T4260 98-103 Protein denotes NF-κB
T4261 80-93 Negative_regulation denotes down-regulate
T4262 150-155 Protein denotes NF-κB
T4264 136-146 Positive_regulation denotes activation
R3850 T4259 T4261 causeOf p65,down-regulate
R3851 T4260 T4261 themeOf NF-κB,down-regulate
R3854 T4262 T4264 themeOf NF-κB,activation

test2

Id Subject Object Predicate Lexical cue
T1181 5-26 Protein denotes histone deacetylase-3
T1182 30-35 Protein denotes SIRT1
T1183 40-51 Phosphorylation denotes acetylation
T1184 55-58 Protein denotes p65
T1185 62-68 Entity denotes Lys122
T1186 73-79 Entity denotes Lys123
R1013 T1185 T1184 partOf Lys122,p65
R1014 T1185 T1183 themeOf Lys122,acetylation
R1015 T1186 T1183 themeOf Lys123,acetylation
R1016 T1186 T1184 partOf Lys123,p65

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1359 40-51 Deacetylation denotes acetylation
T1360 40-51 Deacetylation denotes acetylation
T1361 55-58 Protein denotes p65
T1362 62-68 Entity denotes Lys122
T1363 73-79 Entity denotes Lys123
T1357 5-26 Protein denotes histone deacetylase-3
T1358 30-35 Protein denotes SIRT1
R1221 T1362 T1359 themeOf Lys122,acetylation
R1222 T1362 T1361 partOf Lys122,p65
R1223 T1363 T1360 themeOf Lys123,acetylation
R1224 T1363 T1361 partOf Lys123,p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2271 30-35 Q96EB6 denotes SIRT1
T2272 55-58 P21579 denotes p65
T2273 55-58 Q04206 denotes p65