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PMC:3333881 / 2952-3095 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-11533489-77584407 133-135 11533489 denotes 12
22187158-12419806-77584408 136-138 12419806 denotes 21
22187158-15152190-77584409 139-141 15152190 denotes 22

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1734 0-13 NN denotes Deacetylation
T1735 14-16 IN denotes of
T1736 17-20 NN denotes p65
T1737 21-23 IN denotes by
T1738 24-31 NN denotes histone
T1739 32-45 NN denotes deacetylase-3
T1740 46-48 CC denotes or
T1741 49-54 NN denotes SIRT1
T1742 54-55 -COMMA- denotes ,
T1743 56-58 CC denotes or
T1744 59-70 NN denotes acetylation
T1745 71-73 IN denotes of
T1746 74-77 NN denotes p65
T1747 78-80 IN denotes at
T1748 81-87 NN denotes Lys122
T1749 88-91 CC denotes and
T1750 92-98 NN denotes Lys123
T1751 99-112 VB denotes down-regulate
T1752 113-116 DT denotes the
T1753 117-122 NN denotes NF-κB
T1754 123-131 NN denotes activity
T1755 132-133 -LRB- denotes (
T1756 133-141 CD denotes 12,21,22
T1757 141-142 -RRB- denotes )
R1558 T1734 T1735 arg1Of Deacetylation,of
R1559 T1734 T1737 arg1Of Deacetylation,by
R1560 T1734 T1743 arg1Of Deacetylation,or
R1561 T1736 T1735 arg2Of p65,of
R1562 T1739 T1740 arg1Of deacetylase-3,or
R1563 T1740 T1737 arg2Of or,by
R1564 T1740 T1738 arg1Of or,histone
R1565 T1741 T1740 arg2Of SIRT1,or
R1566 T1743 T1742 arg1Of or,","
R1567 T1743 T1751 arg1Of or,down-regulate
R1568 T1744 T1743 arg2Of acetylation,or
R1569 T1744 T1745 arg1Of acetylation,of
R1570 T1744 T1747 arg1Of acetylation,at
R1571 T1746 T1745 arg2Of p65,of
R1572 T1748 T1749 arg1Of Lys122,and
R1573 T1749 T1747 arg2Of and,at
R1574 T1750 T1749 arg2Of Lys123,and
R1575 T1754 T1751 arg2Of activity,down-regulate
R1576 T1754 T1752 arg1Of activity,the
R1577 T1754 T1753 arg1Of activity,NF-κB
R1578 T1754 T1755 arg1Of activity,(
R1579 T1756 T1755 arg2Of "12,21,22",(
R1580 T1757 T1755 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2621 0-13 NN denotes Deacetylation
T2622 14-16 IN denotes of
T2623 17-20 CD denotes p65
T2624 21-23 IN denotes by
T2625 24-31 NN denotes histone
T2626 32-45 JJ denotes deacetylase-3
T2627 46-48 CC denotes or
T2628 49-54 CD denotes SIRT1
T2629 54-55 , denotes ,
T2630 56-58 CC denotes or
T2631 59-70 NN denotes acetylation
T2632 71-73 IN denotes of
T2633 74-77 NNS denotes p65
T2634 78-80 IN denotes at
T2635 81-87 NNP denotes Lys122
T2636 88-91 CC denotes and
T2637 92-98 NNP denotes Lys123
T2638 99-112 VBP denotes down-regulate
T2639 113-116 DT denotes the
T2640 117-122 NN denotes NF-κB
T2641 123-131 NN denotes activity
T2642 132-133 -LRB- denotes (
T2643 133-141 CD denotes 12,21,22
T2644 141-142 -RRB- denotes )
T2645 142-143 . denotes .
R2328 T2621 T2638 nsubj Deacetylation,down-regulate
R2329 T2622 T2621 prep of,Deacetylation
R2330 T2623 T2622 pobj p65,of
R2332 T2624 T2621 prep by,Deacetylation
R2333 T2625 T2624 pobj histone,by
R2334 T2626 T2621 conj deacetylase-3,Deacetylation
R2336 T2627 T2626 cc or,deacetylase-3
R2337 T2628 T2626 conj SIRT1,deacetylase-3
R2338 T2629 T2628 punct ",",SIRT1
R2340 T2630 T2628 cc or,SIRT1
R2341 T2631 T2628 conj acetylation,SIRT1
R2342 T2632 T2631 prep of,acetylation
R2343 T2633 T2632 pobj p65,of
R2345 T2634 T2631 prep at,acetylation
R2346 T2635 T2634 pobj Lys122,at
R2347 T2636 T2635 cc and,Lys122
R2349 T2637 T2635 conj Lys123,Lys122
R2350 T2638 T2638 ROOT down-regulate,down-regulate
R2351 T2639 T2641 det the,activity
R2352 T2640 T2641 compound NF-κB,activity
R2353 T2641 T2638 dobj activity,down-regulate
R2355 T2642 T2641 punct (,activity
R2356 T2643 T2641 appos "12,21,22",activity
R2357 T2644 T2641 punct ),activity
R2359 T2645 T2638 punct .,down-regulate

sentences

Id Subject Object Predicate Lexical cue
T1438 0-143 Sentence denotes Deacetylation of p65 by histone deacetylase-3 or SIRT1, or acetylation of p65 at Lys122 and Lys123 down-regulate the NF-κB activity (12,21,22).
T20 0-143 Sentence denotes Deacetylation of p65 by histone deacetylase-3 or SIRT1, or acetylation of p65 at Lys122 and Lys123 down-regulate the NF-κB activity (12,21,22).

events-check-again

Id Subject Object Predicate Lexical cue
T4109 0-13 Deacetylation denotes Deacetylation
T4110 0-13 Deacetylation denotes Deacetylation
T4111 17-20 Protein denotes p65
T4112 24-45 Protein denotes histone deacetylase-3
T4113 49-54 Protein denotes SIRT1
T4114 59-70 Deacetylation denotes acetylation
T4115 59-70 Deacetylation denotes acetylation
T4116 74-77 Protein denotes p65
T4117 81-87 Entity denotes Lys122
T4118 92-98 Entity denotes Lys123
R3948 T4111 T4110 themeOf p65,Deacetylation
R3949 T4111 T4109 themeOf p65,Deacetylation
R3950 T4112 T4110 causeOf histone deacetylase-3,Deacetylation
R3951 T4113 T4109 causeOf SIRT1,Deacetylation
R3957 T4117 T4114 themeOf Lys122,acetylation
R3959 T4117 T4116 partOf Lys122,p65
R3967 T4118 T4115 themeOf Lys123,acetylation
R3969 T4118 T4116 partOf Lys123,p65

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4256 17-20 Protein denotes p65
T4257 24-45 Protein denotes histone deacetylase-3
T4258 49-54 Protein denotes SIRT1
T4259 74-77 Protein denotes p65
T4260 117-122 Protein denotes NF-κB
T4261 99-112 Negative_regulation denotes down-regulate
R3850 T4259 T4261 causeOf p65,down-regulate
R3851 T4260 T4261 themeOf NF-κB,down-regulate

test2

Id Subject Object Predicate Lexical cue
T1179 0-13 Negative_regulation denotes Deacetylation
T1180 17-20 Protein denotes p65
T1181 24-45 Protein denotes histone deacetylase-3
T1182 49-54 Protein denotes SIRT1
T1183 59-70 Phosphorylation denotes acetylation
T1184 74-77 Protein denotes p65
T1185 81-87 Entity denotes Lys122
T1186 92-98 Entity denotes Lys123
R1010 T1180 T1179 themeOf p65,Deacetylation
R1011 T1181 T1179 causeOf histone deacetylase-3,Deacetylation
R1012 T1182 T1179 causeOf SIRT1,Deacetylation
R1013 T1185 T1184 partOf Lys122,p65
R1014 T1185 T1183 themeOf Lys122,acetylation
R1015 T1186 T1183 themeOf Lys123,acetylation
R1016 T1186 T1184 partOf Lys123,p65

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1359 59-70 Deacetylation denotes acetylation
T1360 59-70 Deacetylation denotes acetylation
T1361 74-77 Protein denotes p65
T1362 81-87 Entity denotes Lys122
T1363 92-98 Entity denotes Lys123
T1354 0-13 Deacetylation denotes Deacetylation
T1355 0-13 Deacetylation denotes Deacetylation
T1356 17-20 Protein denotes p65
T1357 24-45 Protein denotes histone deacetylase-3
T1358 49-54 Protein denotes SIRT1
R1217 T1356 T1355 themeOf p65,Deacetylation
R1218 T1356 T1354 themeOf p65,Deacetylation
R1219 T1357 T1355 causeOf histone deacetylase-3,Deacetylation
R1220 T1358 T1354 causeOf SIRT1,Deacetylation
R1221 T1362 T1359 themeOf Lys122,acetylation
R1222 T1362 T1361 partOf Lys122,p65
R1223 T1363 T1360 themeOf Lys123,acetylation
R1224 T1363 T1361 partOf Lys123,p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2269 17-20 P21579 denotes p65
T2270 17-20 Q04206 denotes p65
T2271 49-54 Q96EB6 denotes SIRT1
T2272 74-77 P21579 denotes p65
T2273 74-77 Q04206 denotes p65