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PMC:3333881 / 29329-29497 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13565 0-3 NN denotes Tat
T13566 4-24 VB denotes coimmunoprecipitated
T13567 25-29 IN denotes with
T13568 30-35 NN denotes p65ΔC
T13569 36-37 -LRB- denotes (
T13570 37-42 CD denotes 1–318
T13571 42-43 -RRB- denotes )
T13572 43-44 -COMMA- denotes ,
T13573 45-48 CC denotes and
T13574 49-52 RB denotes not
T13575 53-57 IN denotes with
T13576 58-63 NN denotes p65ΔN
T13577 64-65 -LRB- denotes (
T13578 65-72 CD denotes 122–551
T13579 72-73 -RRB- denotes )
T13580 74-75 -LRB- denotes (
T13581 75-81 NN denotes Figure
T13582 82-84 NN denotes 4D
T13583 84-85 -RRB- denotes )
T13584 85-86 -COMMA- denotes ,
T13585 87-97 VB denotes indicating
T13586 98-102 IN denotes that
T13587 103-106 DT denotes the
T13588 107-110 NN denotes RHD
T13589 111-113 IN denotes of
T13590 114-117 NN denotes p65
T13591 118-121 VB denotes was
T13592 122-130 VB denotes involved
T13593 131-133 IN denotes in
T13594 134-137 DT denotes the
T13595 138-146 JJ denotes physical
T13596 147-158 NN denotes interaction
T13597 159-163 IN denotes with
T13598 164-167 NN denotes Tat
R10992 T13565 T13566 arg1Of Tat,coimmunoprecipitated
R10993 T13566 T13567 arg1Of coimmunoprecipitated,with
R10994 T13566 T13575 arg1Of coimmunoprecipitated,with
R10995 T13566 T13584 arg1Of coimmunoprecipitated,","
R10996 T13566 T13585 modOf coimmunoprecipitated,indicating
R10997 T13567 T13573 arg1Of with,and
R10998 T13568 T13567 arg2Of p65ΔC,with
R10999 T13568 T13569 arg1Of p65ΔC,(
R11000 T13570 T13569 arg2Of 1–318,(
R11001 T13571 T13569 arg3Of ),(
R11002 T13573 T13572 arg1Of and,","
R11003 T13575 T13573 arg2Of with,and
R11004 T13575 T13574 arg1Of with,not
R11005 T13576 T13575 arg2Of p65ΔN,with
R11006 T13576 T13577 arg1Of p65ΔN,(
R11007 T13576 T13580 arg1Of p65ΔN,(
R11008 T13578 T13577 arg2Of 122–551,(
R11009 T13579 T13577 arg3Of ),(
R11010 T13582 T13580 arg2Of 4D,(
R11011 T13582 T13581 arg1Of 4D,Figure
R11012 T13583 T13580 arg3Of ),(
R11013 T13588 T13587 arg1Of RHD,the
R11014 T13588 T13589 arg1Of RHD,of
R11015 T13588 T13591 arg1Of RHD,was
R11016 T13588 T13592 arg2Of RHD,involved
R11017 T13590 T13589 arg2Of p65,of
R11018 T13592 T13585 arg2Of involved,indicating
R11019 T13592 T13586 arg1Of involved,that
R11020 T13592 T13591 arg2Of involved,was
R11021 T13592 T13593 arg1Of involved,in
R11022 T13596 T13593 arg2Of interaction,in
R11023 T13596 T13594 arg1Of interaction,the
R11024 T13596 T13595 arg1Of interaction,physical
R11025 T13596 T13597 arg1Of interaction,with
R11026 T13598 T13597 arg2Of Tat,with

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14109 0-3 NNP denotes Tat
T14110 4-24 VBD denotes coimmunoprecipitated
T14111 25-29 IN denotes with
T14112 30-35 NNP denotes p65ΔC
T14113 36-37 -LRB- denotes (
T14114 37-38 CD denotes 1
T14115 39-42 CD denotes 318
T14116 42-43 -RRB- denotes )
T14117 43-44 , denotes ,
T14118 45-48 CC denotes and
T14119 49-52 RB denotes not
T14120 53-57 IN denotes with
T14121 58-63 NNP denotes p65ΔN
T14122 64-65 -LRB- denotes (
T14123 65-68 CD denotes 122
T14124 69-72 CD denotes 551
T14125 72-73 -RRB- denotes )
T14126 74-75 -LRB- denotes (
T14127 75-81 NN denotes Figure
T14128 82-84 CD denotes 4D
T14129 84-85 -RRB- denotes )
T14130 85-86 , denotes ,
T14131 87-97 VBG denotes indicating
T14132 98-102 IN denotes that
T14133 103-106 DT denotes the
T14134 107-110 NNP denotes RHD
T14135 111-113 IN denotes of
T14136 114-117 CD denotes p65
T14137 118-121 VBD denotes was
T14138 122-130 VBN denotes involved
T14139 131-133 IN denotes in
T14140 134-137 DT denotes the
T14141 138-146 JJ denotes physical
T14142 147-158 NN denotes interaction
T14143 159-163 IN denotes with
T14144 164-167 NNP denotes Tat
T14145 167-168 . denotes .
R11391 T14109 T14110 nsubj Tat,coimmunoprecipitated
R11392 T14110 T14110 ROOT coimmunoprecipitated,coimmunoprecipitated
R11393 T14111 T14110 prep with,coimmunoprecipitated
R11394 T14112 T14111 pobj p65ΔC,with
R11395 T14113 T14114 punct (,1
R11396 T14114 T14112 nummod 1,p65ΔC
R11405 T14123 T14124 dep 122,551
R11406 T14124 T14121 appos 551,p65ΔN
R11407 T14125 T14121 punct ),p65ΔN
R11408 T14126 T14127 punct (,Figure
R11409 T14127 T14120 appos Figure,with
R11410 T14128 T14127 nummod 4D,Figure
R11411 T14129 T14127 punct ),Figure
R11412 T14130 T14131 punct ",",indicating
R11413 T14131 T14110 conj indicating,coimmunoprecipitated
R11414 T14132 T14138 mark that,involved
R11415 T14133 T14134 det the,RHD
R11416 T14134 T14138 nsubjpass RHD,involved
R11417 T14135 T14134 prep of,RHD
R11418 T14136 T14135 pobj p65,of
R11419 T14137 T14138 auxpass was,involved
R11420 T14138 T14131 ccomp involved,indicating
R11421 T14139 T14138 prep in,involved
R11422 T14140 T14142 det the,interaction
R11423 T14141 T14142 amod physical,interaction
R11424 T14142 T14139 pobj interaction,in
R11425 T14143 T14142 prep with,interaction
R11426 T14144 T14143 pobj Tat,with
R11427 T14145 T14110 punct .,coimmunoprecipitated
R11397 T14115 T14112 appos 318,p65ΔC
R11398 T14116 T14112 punct ),p65ΔC
R11399 T14117 T14110 punct ",",coimmunoprecipitated
R11400 T14118 T14110 cc and,coimmunoprecipitated
R11401 T14119 T14120 neg not,with
R11402 T14120 T14131 prep with,indicating
R11403 T14121 T14120 pobj p65ΔN,with
R11404 T14122 T14121 punct (,p65ΔN

sentences

Id Subject Object Predicate Lexical cue
T13331 0-168 Sentence denotes Tat coimmunoprecipitated with p65ΔC (1–318), and not with p65ΔN (122–551) (Figure 4D), indicating that the RHD of p65 was involved in the physical interaction with Tat.
T178 0-168 Sentence denotes Tat coimmunoprecipitated with p65ΔC (1–318), and not with p65ΔN (122–551) (Figure 4D), indicating that the RHD of p65 was involved in the physical interaction with Tat.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T14727 0-3 Protein denotes Tat
T14728 4-24 Binding denotes coimmunoprecipitated true
T14729 30-43 Protein denotes p65ΔC (1–318)
T14730 58-73 Protein denotes p65ΔN (122–551)
T14731 107-110 Entity denotes RHD
T14732 114-117 Protein denotes p65
T14733 147-158 Binding denotes interaction
T14734 164-167 Protein denotes Tat
R11822 T14727 T14728 themeOf Tat,coimmunoprecipitated
R11823 T14729 T14728 themeOf p65ΔC (1–318),coimmunoprecipitated
R11824 T14731 T14733 themeOf RHD,interaction
R11825 T14731 T14732 partOf RHD,p65
R11826 T14734 T14733 themeOf Tat,interaction

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14802 114-117 Protein denotes p65
T14803 164-167 Protein denotes Tat
T14804 147-158 Binding denotes interaction
R11871 T14802 T14804 themeOf p65,interaction
R11872 T14803 T14804 themeOf Tat,interaction

test2

Id Subject Object Predicate Lexical cue
T13211 0-3 Protein denotes Tat
T13212 4-24 Binding denotes coimmunoprecipitated
T13213 30-44 Protein denotes p65ΔC (1–318),
T13214 58-73 Protein denotes p65ΔN (122–551)
T13215 107-110 Entity denotes RHD
T13216 114-117 Protein denotes p65
T13217 147-158 Binding denotes interaction
T13218 164-167 Protein denotes Tat
R10693 T13211 T13212 themeOf Tat,coimmunoprecipitated
R10694 T13213 T13212 themeOf "p65ΔC (1–318),",coimmunoprecipitated
R10695 T13215 T13217 themeOf RHD,interaction
R10696 T13215 T13216 partOf RHD,p65
R10697 T13218 T13217 themeOf Tat,interaction

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T13291 0-3 Protein denotes Tat
T13292 4-24 Binding denotes coimmunoprecipitated true
T13293 30-43 Protein denotes p65ΔC (1–318)
T13294 58-73 Protein denotes p65ΔN (122–551)
T13295 107-110 Entity denotes RHD
T13296 114-117 Protein denotes p65
T13297 147-158 Binding denotes interaction
T13298 164-167 Protein denotes Tat
R10741 T13291 T13292 themeOf Tat,coimmunoprecipitated
R10742 T13293 T13292 themeOf p65ΔC (1–318),coimmunoprecipitated
R10743 T13295 T13297 themeOf RHD,interaction
R10744 T13295 T13296 partOf RHD,p65
R10745 T13298 T13297 themeOf Tat,interaction

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13809 0-3 P04610 denotes Tat
T13810 0-3 P04608 denotes Tat
T13811 0-3 Q8UMQ1 denotes Tat
T13812 0-3 P04605 denotes Tat
T13813 114-117 Q04206 denotes p65
T13814 114-117 P21579 denotes p65
T13815 164-167 P04605 denotes Tat
T13816 164-167 P04610 denotes Tat
T13817 164-167 Q8UMQ1 denotes Tat
T13818 164-167 P04608 denotes Tat