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PMC:3333881 / 278-659 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T184 3-15 NN denotes deregulation
T185 16-18 IN denotes by
T186 19-24 NN denotes HIV-1
T187 25-28 VB denotes are
T188 29-37 JJ denotes relevant
T189 38-41 IN denotes for
T190 42-48 JJ denotes immune
T191 49-60 NN denotes dysfunction
T192 61-63 IN denotes in
T193 64-68 NN denotes AIDS
T194 70-72 PRP denotes We
T195 73-79 VB denotes report
T196 80-84 IN denotes that
T197 85-87 IN denotes in
T198 88-94 JJ denotes single
T199 95-100 JJ denotes round
T200 101-106 NN denotes HIV-1
T201 107-116 NN denotes infection
T202 116-117 -COMMA- denotes ,
T203 118-120 CC denotes or
T204 121-133 JJ denotes single-pulse
T205 134-137 NN denotes PMA
T206 138-149 NN denotes stimulation
T207 149-150 -COMMA- denotes ,
T208 151-154 DT denotes the
T209 155-160 NN denotes HIV-1
T210 161-164 NN denotes Tat
T211 165-179 NN denotes transactivator
T212 180-189 VB denotes activated
T213 190-195 NN denotes NF-κB
T214 196-198 IN denotes by
T215 199-208 VB denotes hijacking
T216 209-212 DT denotes the
T217 213-222 NN denotes inhibitor
T218 223-228 NN denotes IκB-α
T219 229-232 CC denotes and
T220 233-235 IN denotes by
T221 236-246 VB denotes preventing
T222 247-250 DT denotes the
T223 251-260 NN denotes repressor
T224 261-268 NN denotes binding
T225 269-271 TO denotes to
T226 272-275 DT denotes the
T227 276-281 NN denotes NF-κB
T228 282-289 NN denotes complex
T229 291-299 RB denotes Moreover
T230 299-300 -COMMA- denotes ,
T231 301-304 NN denotes Tat
T232 305-315 VB denotes associated
T233 316-320 IN denotes with
T234 321-324 DT denotes the
T235 325-328 NN denotes p65
T236 329-336 NN denotes subunit
T237 337-339 IN denotes of
T238 340-345 NN denotes NF-κB
T239 346-349 CC denotes and
T240 350-359 VB denotes increased
T241 360-363 DT denotes the
T242 364-367 NN denotes p65
T243 368-379 JJ denotes DNA-binding
R118 T184 T185 arg1Of deregulation,by
R119 T186 T185 arg2Of HIV-1,by
R120 T188 T187 arg2Of relevant,are
R121 T188 T189 arg1Of relevant,for
R122 T191 T189 arg2Of dysfunction,for
R123 T191 T190 arg1Of dysfunction,immune
R124 T191 T192 arg1Of dysfunction,in
R125 T193 T192 arg2Of AIDS,in
R126 T194 T195 arg1Of We,report
R127 T201 T198 arg1Of infection,single
R128 T201 T199 arg1Of infection,round
R129 T201 T200 arg1Of infection,HIV-1
R130 T201 T203 arg1Of infection,or
R131 T203 T197 arg2Of or,in
R132 T203 T202 arg1Of or,","
R133 T206 T203 arg2Of stimulation,or
R134 T206 T204 arg1Of stimulation,single-pulse
R135 T206 T205 arg1Of stimulation,PMA
R136 T211 T208 arg1Of transactivator,the
R137 T211 T209 arg1Of transactivator,HIV-1
R138 T211 T210 arg1Of transactivator,Tat
R139 T211 T212 arg1Of transactivator,activated
R140 T211 T215 arg1Of transactivator,hijacking
R141 T211 T221 arg1Of transactivator,preventing
R142 T212 T195 arg2Of activated,report
R143 T212 T196 arg1Of activated,that
R144 T212 T197 arg1Of activated,in
R145 T212 T207 arg1Of activated,","
R146 T212 T214 arg1Of activated,by
R147 T212 T220 arg1Of activated,by
R148 T213 T212 arg2Of NF-κB,activated
R149 T214 T219 arg1Of by,and
R150 T215 T214 arg2Of hijacking,by
R151 T218 T215 arg2Of IκB-α,hijacking
R152 T218 T216 arg1Of IκB-α,the
R153 T218 T217 arg1Of IκB-α,inhibitor
R154 T220 T219 arg2Of by,and
R155 T221 T220 arg2Of preventing,by
R156 T224 T221 arg2Of binding,preventing
R157 T224 T222 arg1Of binding,the
R158 T224 T223 arg1Of binding,repressor
R159 T224 T225 arg1Of binding,to
R160 T228 T225 arg2Of complex,to
R161 T228 T226 arg1Of complex,the
R162 T228 T227 arg1Of complex,NF-κB
R163 T231 T232 arg1Of Tat,associated
R164 T231 T240 arg1Of Tat,increased
R165 T232 T233 arg1Of associated,with
R166 T232 T239 arg1Of associated,and
R167 T236 T233 arg2Of subunit,with
R168 T236 T234 arg1Of subunit,the
R169 T236 T235 arg1Of subunit,p65
R170 T236 T237 arg1Of subunit,of
R171 T238 T237 arg2Of NF-κB,of
R172 T239 T229 arg1Of and,Moreover
R173 T239 T230 arg1Of and,","
R174 T240 T239 arg2Of increased,and

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T356 247-260 Anaphor denotes the repressor
T357 223-228 Antecedent denotes IκB-α
R685 T356 T357 boundBy the repressor,IκB-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T446 3-15 NN denotes deregulation
T447 16-18 IN denotes by
T448 19-24 NNP denotes HIV-1
T449 25-28 VBP denotes are
T450 29-37 JJ denotes relevant
T451 38-41 IN denotes for
T452 42-48 JJ denotes immune
T453 49-60 NN denotes dysfunction
T454 61-63 IN denotes in
T455 64-68 NNP denotes AIDS
T456 68-69 . denotes .
T457 70-72 PRP denotes We
T458 73-79 VBP denotes report
T459 80-84 IN denotes that
T460 85-87 IN denotes in
T461 88-94 JJ denotes single
T462 95-100 NN denotes round
T463 101-106 NN denotes HIV-1
T464 107-116 NN denotes infection
T465 116-117 , denotes ,
T466 118-120 CC denotes or
T467 121-133 JJ denotes single-pulse
T468 134-137 NNP denotes PMA
T469 138-149 NN denotes stimulation
T470 149-150 , denotes ,
T471 151-154 DT denotes the
T472 155-160 NNP denotes HIV-1
T473 161-164 NNP denotes Tat
T474 165-179 NN denotes transactivator
T475 180-189 VBD denotes activated
T476 190-195 JJ denotes NF-κB
T477 196-198 IN denotes by
T478 199-208 VBG denotes hijacking
T479 209-212 DT denotes the
T480 213-222 NN denotes inhibitor
T481 223-228 NN denotes IκB-α
T482 229-232 CC denotes and
T483 233-235 IN denotes by
T484 236-246 VBG denotes preventing
T485 247-250 DT denotes the
T486 251-260 NN denotes repressor
T487 261-268 JJ denotes binding
T488 269-271 TO denotes to
T489 272-275 DT denotes the
T490 276-281 JJ denotes NF-κB
T491 282-289 NN denotes complex
T492 289-290 . denotes .
T493 291-299 RB denotes Moreover
T494 299-300 , denotes ,
T495 301-304 NNP denotes Tat
T496 305-315 VBN denotes associated
T497 316-320 IN denotes with
T498 321-324 DT denotes the
T499 325-328 CD denotes p65
T500 329-336 NN denotes subunit
T501 337-339 IN denotes of
T502 340-345 NNP denotes NF-κB
T503 346-349 CC denotes and
T504 350-359 VBD denotes increased
T505 360-363 DT denotes the
T506 364-367 CD denotes p65
T507 368-379 JJ denotes DNA-binding
R338 T447 T446 prep by,deregulation
R339 T448 T447 pobj HIV-1,by
R340 T449 T449 ROOT are,are
R341 T450 T449 acomp relevant,are
R342 T451 T450 prep for,relevant
R343 T452 T453 amod immune,dysfunction
R344 T453 T451 pobj dysfunction,for
R345 T454 T453 prep in,dysfunction
R346 T455 T454 pobj AIDS,in
R347 T456 T449 punct .,are
R348 T457 T458 nsubj We,report
R349 T458 T458 ROOT report,report
R350 T459 T475 mark that,activated
R351 T460 T475 prep in,activated
R352 T461 T464 amod single,infection
R353 T462 T464 compound round,infection
R354 T463 T464 compound HIV-1,infection
R355 T464 T460 pobj infection,in
R356 T465 T460 punct ",",in
R357 T466 T460 cc or,in
R358 T467 T469 amod single-pulse,stimulation
R359 T468 T469 compound PMA,stimulation
R360 T469 T475 dep stimulation,activated
R361 T470 T475 punct ",",activated
R362 T471 T474 det the,transactivator
R363 T472 T474 compound HIV-1,transactivator
R364 T473 T474 compound Tat,transactivator
R365 T474 T475 nsubj transactivator,activated
R366 T475 T458 ccomp activated,report
R367 T476 T475 dobj NF-κB,activated
R368 T477 T475 prep by,activated
R369 T478 T477 pcomp hijacking,by
R370 T479 T481 det the,IκB-α
R371 T480 T481 compound inhibitor,IκB-α
R372 T481 T478 dobj IκB-α,hijacking
R373 T482 T477 cc and,by
R374 T483 T477 conj by,by
R375 T484 T483 pcomp preventing,by
R376 T485 T486 det the,repressor
R377 T486 T484 dobj repressor,preventing
R378 T487 T484 oprd binding,preventing
R379 T488 T487 prep to,binding
R380 T489 T491 det the,complex
R381 T490 T491 amod NF-κB,complex
R382 T491 T488 pobj complex,to
R383 T492 T458 punct .,report
R384 T493 T496 advmod Moreover,associated
R385 T494 T496 punct ",",associated
R386 T495 T496 npadvmod Tat,associated
R387 T496 T496 ROOT associated,associated
R388 T497 T496 prep with,associated
R389 T498 T500 det the,subunit
R390 T499 T500 nummod p65,subunit
R391 T500 T497 pobj subunit,with
R392 T501 T500 prep of,subunit
R393 T502 T501 pobj NF-κB,of
R394 T503 T496 cc and,associated
R395 T504 T496 conj increased,associated

GO-BP

Id Subject Object Predicate Lexical cue
T634 180-195 http://purl.obolibrary.org/obo/GO_0051092 denotes activated NF-κB

GO-MF

Id Subject Object Predicate Lexical cue
T640 261-268 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T641 372-379 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T642 261-281 http://purl.obolibrary.org/obo/GO_0051059 denotes binding to the NF-κB
T643 368-379 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA-binding

GO-CC

Id Subject Object Predicate Lexical cue
T644 276-289 http://purl.obolibrary.org/obo/GO_0071159 denotes NF-κB complex

sentences

Id Subject Object Predicate Lexical cue
T92 70-290 Sentence denotes We report that in single round HIV-1 infection, or single-pulse PMA stimulation, the HIV-1 Tat transactivator activated NF-κB by hijacking the inhibitor IκB-α and by preventing the repressor binding to the NF-κB complex.
T5 70-290 Sentence denotes We report that in single round HIV-1 infection, or single-pulse PMA stimulation, the HIV-1 Tat transactivator activated NF-κB by hijacking the inhibitor IκB-α and by preventing the repressor binding to the NF-κB complex.

events-check-again

Id Subject Object Predicate Lexical cue
T862 161-164 Protein denotes Tat
T863 199-208 Binding denotes hijacking
T864 223-228 Protein denotes IκB-α
T865 236-246 Negative_regulation denotes preventing
T866 261-268 Binding denotes binding
T867 301-304 Protein denotes Tat
T868 305-315 Binding denotes associated
T869 325-328 Protein denotes p65
T870 350-359 Positive_regulation denotes increased
T871 364-367 Protein denotes p65
T872 372-379 Binding denotes binding
R743 T862 T863 themeOf Tat,hijacking
R744 T862 T865 causeOf Tat,preventing
R745 T864 T863 themeOf IκB-α,hijacking
R746 T864 T866 themeOf IκB-α,binding
R747 T866 T865 themeOf binding,preventing
R748 T867 T868 themeOf Tat,associated
R749 T867 T870 causeOf Tat,increased
R750 T869 T868 themeOf p65,associated
R751 T871 T872 themeOf p65,binding
R752 T872 T870 themeOf binding,increased

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T912 3-15 Regulation denotes deregulation
T913 155-179 Protein denotes HIV-1 Tat transactivator
T914 190-195 Protein denotes NF-κB
T915 223-228 Protein denotes IκB-α
T916 276-289 Protein denotes NF-κB complex
T917 180-189 Positive_regulation denotes activated
T918 261-268 Binding denotes binding
T919 236-246 Negative_regulation denotes preventing
T920 301-304 Protein denotes Tat
T921 325-336 Protein denotes p65 subunit
T922 340-345 Protein denotes NF-κB
T923 364-367 Protein denotes p65
T924 305-315 Binding denotes associated
R638 T913 T917 causeOf HIV-1 Tat transactivator,activated
R639 T914 T917 themeOf NF-κB,activated
R640 T916 T918 themeOf NF-κB complex,binding
R641 T918 T919 themeOf binding,preventing
R642 T920 T924 themeOf Tat,associated
R643 T921 T924 themeOf p65 subunit,associated

test2

Id Subject Object Predicate Lexical cue
T50 161-164 Protein denotes Tat
T51 199-208 Binding denotes hijacking
T52 213-222 Negative_regulation denotes inhibitor
T53 223-228 Protein denotes IκB-α
T54 261-268 Binding denotes binding
T55 301-304 Protein denotes Tat
T56 305-315 Binding denotes associated
T57 325-328 Protein denotes p65
T58 350-359 Positive_regulation denotes increased
T59 364-367 Protein denotes p65
T60 372-379 Binding denotes binding
R656 T50 T51 themeOf Tat,hijacking
R657 T53 T51 themeOf IκB-α,hijacking
R658 T53 T54 themeOf IκB-α,binding
R659 T53 T52 themeOf IκB-α,inhibitor
R660 T55 T58 causeOf Tat,increased
R661 T55 T56 themeOf Tat,associated
R662 T57 T56 themeOf p65,associated
R663 T59 T60 themeOf p65,binding
R664 T60 T58 themeOf binding,increased

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T108 199-208 Binding denotes hijacking
T110 236-246 Negative_regulation denotes preventing
T111 261-268 Binding denotes binding
T112 305-315 Binding denotes associated
T113 350-359 Positive_regulation denotes increased
T114 372-379 Binding denotes binding
T136 223-228 Protein denotes IκB-α
T137 301-304 Protein denotes Tat
T138 325-328 Protein denotes p65
T139 364-367 Protein denotes p65
T134 161-164 Protein denotes Tat
R683 T134 T108 themeOf Tat,hijacking
R684 T134 T110 causeOf Tat,preventing
R49 T111 T110 themeOf binding,preventing
R50 T114 T113 themeOf binding,increased
R65 T136 T108 themeOf IκB-α,hijacking
R66 T136 T111 themeOf IκB-α,binding
R67 T137 T112 themeOf Tat,associated
R68 T137 T113 causeOf Tat,increased
R69 T138 T112 themeOf p65,associated
R70 T139 T114 themeOf p65,binding

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T364 161-164 P04605 denotes Tat
T365 161-164 P04610 denotes Tat
T366 161-164 P04608 denotes Tat
T367 161-164 Q8UMQ1 denotes Tat
T368 301-304 P04610 denotes Tat
T369 301-304 P04608 denotes Tat
T370 301-304 P04605 denotes Tat
T371 301-304 Q8UMQ1 denotes Tat
T372 325-328 Q04206 denotes p65
T373 325-328 P21579 denotes p65
T374 364-367 Q04206 denotes p65
T375 364-367 P21579 denotes p65