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PMC:3333881 / 278-1047 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T184 3-15 NN denotes deregulation
T185 16-18 IN denotes by
T186 19-24 NN denotes HIV-1
T187 25-28 VB denotes are
T188 29-37 JJ denotes relevant
T189 38-41 IN denotes for
T190 42-48 JJ denotes immune
T191 49-60 NN denotes dysfunction
T192 61-63 IN denotes in
T193 64-68 NN denotes AIDS
T194 70-72 PRP denotes We
T195 73-79 VB denotes report
T196 80-84 IN denotes that
T197 85-87 IN denotes in
T198 88-94 JJ denotes single
T199 95-100 JJ denotes round
T200 101-106 NN denotes HIV-1
T201 107-116 NN denotes infection
T202 116-117 -COMMA- denotes ,
T203 118-120 CC denotes or
T204 121-133 JJ denotes single-pulse
T205 134-137 NN denotes PMA
T206 138-149 NN denotes stimulation
T207 149-150 -COMMA- denotes ,
T208 151-154 DT denotes the
T209 155-160 NN denotes HIV-1
T210 161-164 NN denotes Tat
T211 165-179 NN denotes transactivator
T212 180-189 VB denotes activated
T213 190-195 NN denotes NF-κB
T214 196-198 IN denotes by
T215 199-208 VB denotes hijacking
T216 209-212 DT denotes the
T217 213-222 NN denotes inhibitor
T218 223-228 NN denotes IκB-α
T219 229-232 CC denotes and
T220 233-235 IN denotes by
T221 236-246 VB denotes preventing
T222 247-250 DT denotes the
T223 251-260 NN denotes repressor
T224 261-268 NN denotes binding
T225 269-271 TO denotes to
T226 272-275 DT denotes the
T227 276-281 NN denotes NF-κB
T228 282-289 NN denotes complex
T229 291-299 RB denotes Moreover
T230 299-300 -COMMA- denotes ,
T231 301-304 NN denotes Tat
T232 305-315 VB denotes associated
T233 316-320 IN denotes with
T234 321-324 DT denotes the
T235 325-328 NN denotes p65
T236 329-336 NN denotes subunit
T237 337-339 IN denotes of
T238 340-345 NN denotes NF-κB
T239 346-349 CC denotes and
T240 350-359 VB denotes increased
T241 360-363 DT denotes the
T242 364-367 NN denotes p65
T243 368-379 JJ denotes DNA-binding
T244 380-388 NN denotes affinity
T245 389-392 CC denotes and
T246 393-408 JJ denotes transcriptional
T247 409-417 NN denotes activity
T248 419-422 DT denotes The
T249 423-432 NN denotes arginine-
T250 433-436 CC denotes and
T251 437-450 JJ denotes cysteine-rich
T252 451-458 NN denotes domains
T253 459-461 IN denotes of
T254 462-465 NN denotes Tat
T255 466-470 VB denotes were
T256 471-479 VB denotes required
T257 480-483 IN denotes for
T258 484-489 NN denotes IκB-α
T259 490-493 CC denotes and
T260 494-497 NN denotes p65
T261 498-509 NN denotes association
T262 509-510 -COMMA- denotes ,
T263 511-523 RB denotes respectively
T264 523-524 -COMMA- denotes ,
T265 525-528 CC denotes and
T266 529-532 IN denotes for
T267 533-543 VB denotes sustaining
T268 544-547 DT denotes the
T269 548-553 NN denotes NF-κB
T270 554-562 NN denotes activity
T271 564-569 IN denotes Among
T272 570-572 DT denotes an
T273 573-578 NN denotes array
T274 579-581 IN denotes of
T275 582-598 JJ denotes NF-κB-responsive
T276 599-604 NN denotes genes
T277 604-605 -COMMA- denotes ,
T278 606-609 NN denotes Tat
T279 610-616 RB denotes mostly
T280 617-626 VB denotes activated
T281 627-630 DT denotes the
T282 631-637 NN denotes MIP-1α
T283 638-648 NN denotes expression
T284 649-651 IN denotes in
T285 652-653 DT denotes a
T286 654-667 JJ denotes p65-dependent
T287 668-674 NN denotes manner
T288 674-675 -COMMA- denotes ,
T289 676-679 CC denotes and
T290 680-685 VB denotes bound
T291 686-688 TO denotes to
T292 689-692 DT denotes the
T293 693-699 NN denotes MIP-1α
T294 700-705 NN denotes NF-κB
T295 706-714 NN denotes enhancer
T296 715-719 RB denotes thus
T297 720-729 VB denotes promoting
T298 730-733 DT denotes the
T299 734-745 NN denotes recruitment
T300 746-748 IN denotes of
T301 749-752 NN denotes p65
T302 753-757 IN denotes with
R118 T184 T185 arg1Of deregulation,by
R119 T186 T185 arg2Of HIV-1,by
R120 T188 T187 arg2Of relevant,are
R121 T188 T189 arg1Of relevant,for
R122 T191 T189 arg2Of dysfunction,for
R123 T191 T190 arg1Of dysfunction,immune
R124 T191 T192 arg1Of dysfunction,in
R125 T193 T192 arg2Of AIDS,in
R126 T194 T195 arg1Of We,report
R127 T201 T198 arg1Of infection,single
R128 T201 T199 arg1Of infection,round
R129 T201 T200 arg1Of infection,HIV-1
R130 T201 T203 arg1Of infection,or
R131 T203 T197 arg2Of or,in
R132 T203 T202 arg1Of or,","
R133 T206 T203 arg2Of stimulation,or
R134 T206 T204 arg1Of stimulation,single-pulse
R135 T206 T205 arg1Of stimulation,PMA
R136 T211 T208 arg1Of transactivator,the
R137 T211 T209 arg1Of transactivator,HIV-1
R138 T211 T210 arg1Of transactivator,Tat
R139 T211 T212 arg1Of transactivator,activated
R140 T211 T215 arg1Of transactivator,hijacking
R141 T211 T221 arg1Of transactivator,preventing
R142 T212 T195 arg2Of activated,report
R143 T212 T196 arg1Of activated,that
R144 T212 T197 arg1Of activated,in
R145 T212 T207 arg1Of activated,","
R146 T212 T214 arg1Of activated,by
R147 T212 T220 arg1Of activated,by
R148 T213 T212 arg2Of NF-κB,activated
R149 T214 T219 arg1Of by,and
R150 T215 T214 arg2Of hijacking,by
R151 T218 T215 arg2Of IκB-α,hijacking
R152 T218 T216 arg1Of IκB-α,the
R153 T218 T217 arg1Of IκB-α,inhibitor
R154 T220 T219 arg2Of by,and
R155 T221 T220 arg2Of preventing,by
R156 T224 T221 arg2Of binding,preventing
R157 T224 T222 arg1Of binding,the
R158 T224 T223 arg1Of binding,repressor
R159 T224 T225 arg1Of binding,to
R160 T228 T225 arg2Of complex,to
R161 T228 T226 arg1Of complex,the
R162 T228 T227 arg1Of complex,NF-κB
R163 T231 T232 arg1Of Tat,associated
R164 T231 T240 arg1Of Tat,increased
R165 T232 T233 arg1Of associated,with
R166 T232 T239 arg1Of associated,and
R167 T236 T233 arg2Of subunit,with
R168 T236 T234 arg1Of subunit,the
R169 T236 T235 arg1Of subunit,p65
R170 T236 T237 arg1Of subunit,of
R171 T238 T237 arg2Of NF-κB,of
R172 T239 T229 arg1Of and,Moreover
R173 T239 T230 arg1Of and,","
R174 T240 T239 arg2Of increased,and
R175 T244 T242 arg1Of affinity,p65
R176 T244 T243 arg1Of affinity,DNA-binding
R177 T244 T245 arg1Of affinity,and
R178 T245 T240 arg2Of and,increased
R179 T245 T241 arg1Of and,the
R180 T247 T245 arg2Of activity,and
R181 T247 T246 arg1Of activity,transcriptional
R182 T249 T250 arg1Of arginine-,and
R183 T251 T250 arg2Of cysteine-rich,and
R184 T252 T248 arg1Of domains,The
R185 T252 T249 arg1Of domains,arginine-
R186 T252 T251 arg1Of domains,cysteine-rich
R187 T252 T253 arg1Of domains,of
R188 T252 T255 arg1Of domains,were
R189 T252 T256 arg2Of domains,required
R190 T254 T253 arg2Of Tat,of
R191 T256 T255 arg2Of required,were
R192 T256 T257 arg1Of required,for
R193 T256 T262 arg1Of required,","
R194 T256 T263 arg1Of required,respectively
R195 T256 T264 arg1Of required,","
R196 T256 T265 arg1Of required,and
R197 T258 T259 arg1Of IκB-α,and
R198 T259 T257 arg2Of and,for
R199 T261 T259 arg2Of association,and
R200 T261 T260 arg1Of association,p65
R201 T266 T256 arg3Of for,required
R202 T267 T266 arg2Of sustaining,for
R203 T270 T267 arg2Of activity,sustaining
R204 T270 T268 arg1Of activity,the
R205 T270 T269 arg1Of activity,NF-κB
R206 T273 T271 arg2Of array,Among
R207 T273 T272 arg1Of array,an
R208 T273 T274 arg1Of array,of
R209 T276 T274 arg2Of genes,of
R210 T276 T275 arg1Of genes,NF-κB-responsive
R211 T278 T280 arg1Of Tat,activated
R212 T278 T290 arg1Of Tat,bound
R213 T280 T284 arg1Of activated,in
R214 T280 T289 arg1Of activated,and
R215 T283 T280 arg2Of expression,activated
R216 T283 T281 arg1Of expression,the
R217 T283 T282 arg1Of expression,MIP-1α
R218 T287 T284 arg2Of manner,in
R219 T287 T285 arg1Of manner,a
R220 T287 T286 arg1Of manner,p65-dependent
R221 T289 T271 arg1Of and,Among
R222 T289 T277 arg1Of and,","
R223 T289 T279 arg1Of and,mostly
R224 T289 T288 arg1Of and,","
R225 T290 T289 arg2Of bound,and
R226 T290 T291 arg1Of bound,to
R227 T295 T291 arg2Of enhancer,to
R228 T295 T292 arg1Of enhancer,the
R229 T295 T293 arg1Of enhancer,MIP-1α
R230 T295 T294 arg1Of enhancer,NF-κB
R231 T295 T297 arg1Of enhancer,promoting
R232 T297 T296 arg1Of promoting,thus
R234 T299 T297 arg2Of recruitment,promoting
R235 T299 T298 arg1Of recruitment,the
R236 T299 T300 arg1Of recruitment,of
R237 T299 T302 arg1Of recruitment,with
R238 T301 T300 arg2Of p65,of

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T356 247-260 Anaphor denotes the repressor
T357 223-228 Antecedent denotes IκB-α
R685 T356 T357 boundBy the repressor,IκB-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T446 3-15 NN denotes deregulation
T447 16-18 IN denotes by
T448 19-24 NNP denotes HIV-1
T449 25-28 VBP denotes are
T450 29-37 JJ denotes relevant
T451 38-41 IN denotes for
T452 42-48 JJ denotes immune
T453 49-60 NN denotes dysfunction
T454 61-63 IN denotes in
T455 64-68 NNP denotes AIDS
T456 68-69 . denotes .
T457 70-72 PRP denotes We
T458 73-79 VBP denotes report
T459 80-84 IN denotes that
T460 85-87 IN denotes in
T461 88-94 JJ denotes single
T462 95-100 NN denotes round
T463 101-106 NN denotes HIV-1
T464 107-116 NN denotes infection
T465 116-117 , denotes ,
T466 118-120 CC denotes or
T467 121-133 JJ denotes single-pulse
T468 134-137 NNP denotes PMA
T469 138-149 NN denotes stimulation
T470 149-150 , denotes ,
T471 151-154 DT denotes the
T472 155-160 NNP denotes HIV-1
T473 161-164 NNP denotes Tat
T474 165-179 NN denotes transactivator
T475 180-189 VBD denotes activated
T476 190-195 JJ denotes NF-κB
T477 196-198 IN denotes by
T478 199-208 VBG denotes hijacking
T479 209-212 DT denotes the
T480 213-222 NN denotes inhibitor
T481 223-228 NN denotes IκB-α
T482 229-232 CC denotes and
T483 233-235 IN denotes by
T484 236-246 VBG denotes preventing
T485 247-250 DT denotes the
T486 251-260 NN denotes repressor
T487 261-268 JJ denotes binding
T488 269-271 TO denotes to
T489 272-275 DT denotes the
T490 276-281 JJ denotes NF-κB
T491 282-289 NN denotes complex
T492 289-290 . denotes .
T493 291-299 RB denotes Moreover
T494 299-300 , denotes ,
T495 301-304 NNP denotes Tat
T496 305-315 VBN denotes associated
T497 316-320 IN denotes with
T498 321-324 DT denotes the
T499 325-328 CD denotes p65
T500 329-336 NN denotes subunit
T501 337-339 IN denotes of
T502 340-345 NNP denotes NF-κB
T503 346-349 CC denotes and
T504 350-359 VBD denotes increased
T505 360-363 DT denotes the
T506 364-367 CD denotes p65
T507 368-379 JJ denotes DNA-binding
T508 380-388 NN denotes affinity
T509 389-392 CC denotes and
T510 393-408 JJ denotes transcriptional
T511 409-417 NN denotes activity
T512 417-418 . denotes .
T513 419-422 DT denotes The
T514 423-431 NN denotes arginine
T515 431-432 : denotes -
T516 433-436 CC denotes and
T517 437-450 JJ denotes cysteine-rich
T518 451-458 NNS denotes domains
T519 459-461 IN denotes of
T520 462-465 NNP denotes Tat
T521 466-470 VBD denotes were
T522 471-479 VBN denotes required
T523 480-483 IN denotes for
T524 484-489 NNP denotes IκB-α
T525 490-493 CC denotes and
T526 494-497 CD denotes p65
T527 498-509 NN denotes association
T528 509-510 , denotes ,
T529 511-523 RB denotes respectively
T530 523-524 , denotes ,
T531 525-528 CC denotes and
T532 529-532 IN denotes for
T533 533-543 VBG denotes sustaining
T534 544-547 DT denotes the
T535 548-553 NN denotes NF-κB
T536 554-562 NN denotes activity
T537 562-563 . denotes .
T538 564-569 IN denotes Among
T539 570-572 DT denotes an
T540 573-578 NN denotes array
T541 579-581 IN denotes of
T542 582-598 JJ denotes NF-κB-responsive
T543 599-604 NNS denotes genes
T544 604-605 , denotes ,
T545 606-609 NNP denotes Tat
T546 610-616 RB denotes mostly
T547 617-626 VBD denotes activated
T548 627-630 DT denotes the
T549 631-637 JJ denotes MIP-1α
T550 638-648 NN denotes expression
T551 649-651 IN denotes in
T552 652-653 DT denotes a
T553 654-667 JJ denotes p65-dependent
T554 668-674 NN denotes manner
T555 674-675 , denotes ,
T556 676-679 CC denotes and
T557 680-685 VBN denotes bound
T558 686-688 TO denotes to
T559 689-692 DT denotes the
T560 693-699 NNP denotes MIP-1α
T561 700-705 NNP denotes NF-κB
T562 706-714 NN denotes enhancer
T563 715-719 RB denotes thus
T564 720-729 VBG denotes promoting
T565 730-733 DT denotes the
T566 734-745 NN denotes recruitment
T567 746-748 IN denotes of
T568 749-752 NNS denotes p65
T569 753-757 IN denotes with
R338 T447 T446 prep by,deregulation
R339 T448 T447 pobj HIV-1,by
R340 T449 T449 ROOT are,are
R341 T450 T449 acomp relevant,are
R342 T451 T450 prep for,relevant
R343 T452 T453 amod immune,dysfunction
R344 T453 T451 pobj dysfunction,for
R345 T454 T453 prep in,dysfunction
R346 T455 T454 pobj AIDS,in
R347 T456 T449 punct .,are
R348 T457 T458 nsubj We,report
R349 T458 T458 ROOT report,report
R350 T459 T475 mark that,activated
R351 T460 T475 prep in,activated
R352 T461 T464 amod single,infection
R353 T462 T464 compound round,infection
R354 T463 T464 compound HIV-1,infection
R355 T464 T460 pobj infection,in
R356 T465 T460 punct ",",in
R357 T466 T460 cc or,in
R358 T467 T469 amod single-pulse,stimulation
R359 T468 T469 compound PMA,stimulation
R360 T469 T475 dep stimulation,activated
R361 T470 T475 punct ",",activated
R362 T471 T474 det the,transactivator
R363 T472 T474 compound HIV-1,transactivator
R364 T473 T474 compound Tat,transactivator
R365 T474 T475 nsubj transactivator,activated
R366 T475 T458 ccomp activated,report
R367 T476 T475 dobj NF-κB,activated
R368 T477 T475 prep by,activated
R369 T478 T477 pcomp hijacking,by
R370 T479 T481 det the,IκB-α
R371 T480 T481 compound inhibitor,IκB-α
R372 T481 T478 dobj IκB-α,hijacking
R373 T482 T477 cc and,by
R374 T483 T477 conj by,by
R375 T484 T483 pcomp preventing,by
R376 T485 T486 det the,repressor
R377 T486 T484 dobj repressor,preventing
R378 T487 T484 oprd binding,preventing
R379 T488 T487 prep to,binding
R380 T489 T491 det the,complex
R381 T490 T491 amod NF-κB,complex
R382 T491 T488 pobj complex,to
R383 T492 T458 punct .,report
R384 T493 T496 advmod Moreover,associated
R385 T494 T496 punct ",",associated
R386 T495 T496 npadvmod Tat,associated
R387 T496 T496 ROOT associated,associated
R388 T497 T496 prep with,associated
R389 T498 T500 det the,subunit
R390 T499 T500 nummod p65,subunit
R391 T500 T497 pobj subunit,with
R392 T501 T500 prep of,subunit
R393 T502 T501 pobj NF-κB,of
R394 T503 T496 cc and,associated
R395 T504 T496 conj increased,associated
R396 T505 T508 det the,affinity
R397 T506 T508 nummod p65,affinity
R398 T507 T508 amod DNA-binding,affinity
R399 T508 T504 dobj affinity,increased
R400 T509 T508 cc and,affinity
R401 T510 T511 compound transcriptional,activity
R402 T511 T508 conj activity,affinity
R403 T512 T496 punct .,associated
R404 T513 T518 det The,domains
R405 T514 T518 nmod arginine,domains
R406 T515 T514 punct -,arginine
R407 T516 T514 cc and,arginine
R408 T517 T518 amod cysteine-rich,domains
R409 T518 T522 nsubjpass domains,required
R410 T519 T518 prep of,domains
R411 T520 T519 pobj Tat,of
R412 T521 T522 auxpass were,required
R413 T522 T522 ROOT required,required
R414 T523 T522 prep for,required
R415 T524 T523 pobj IκB-α,for
R416 T525 T524 cc and,IκB-α
R417 T526 T527 nummod p65,association
R418 T527 T524 conj association,IκB-α
R419 T528 T527 punct ",",association
R420 T529 T527 advmod respectively,association
R421 T530 T527 punct ",",association
R422 T531 T523 cc and,for
R423 T532 T523 conj for,for
R424 T533 T532 pcomp sustaining,for
R425 T534 T536 det the,activity
R426 T535 T536 compound NF-κB,activity
R427 T536 T533 dobj activity,sustaining
R428 T537 T522 punct .,required
R429 T538 T547 prep Among,activated
R430 T539 T540 det an,array
R431 T540 T538 pobj array,Among
R432 T541 T540 prep of,array
R433 T542 T543 amod NF-κB-responsive,genes
R434 T543 T541 pobj genes,of
R435 T544 T547 punct ",",activated
R436 T545 T547 nsubj Tat,activated
R437 T546 T547 advmod mostly,activated
R438 T547 T547 ROOT activated,activated
R439 T548 T550 det the,expression
R440 T549 T550 amod MIP-1α,expression
R441 T550 T547 dobj expression,activated
R442 T551 T547 prep in,activated
R443 T552 T554 det a,manner
R444 T553 T554 amod p65-dependent,manner
R445 T554 T551 pobj manner,in
R446 T555 T547 punct ",",activated
R447 T556 T547 cc and,activated
R448 T557 T547 conj bound,activated
R449 T558 T557 prep to,bound
R450 T559 T562 det the,enhancer
R451 T560 T562 compound MIP-1α,enhancer
R452 T561 T562 compound NF-κB,enhancer
R453 T562 T558 pobj enhancer,to
R454 T563 T564 advmod thus,promoting
R455 T564 T557 conj promoting,bound
R456 T565 T566 det the,recruitment
R457 T566 T564 dobj recruitment,promoting
R458 T567 T566 prep of,recruitment
R459 T568 T567 pobj p65,of
R460 T569 T564 prep with,promoting

GO-BP

Id Subject Object Predicate Lexical cue
T634 180-195 http://purl.obolibrary.org/obo/GO_0051092 denotes activated NF-κB
T636 393-408 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional

GO-MF

Id Subject Object Predicate Lexical cue
T640 261-268 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T641 372-379 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T642 261-281 http://purl.obolibrary.org/obo/GO_0051059 denotes binding to the NF-κB
T643 368-379 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA-binding

GO-CC

Id Subject Object Predicate Lexical cue
T644 276-289 http://purl.obolibrary.org/obo/GO_0071159 denotes NF-κB complex

sentences

Id Subject Object Predicate Lexical cue
T92 70-290 Sentence denotes We report that in single round HIV-1 infection, or single-pulse PMA stimulation, the HIV-1 Tat transactivator activated NF-κB by hijacking the inhibitor IκB-α and by preventing the repressor binding to the NF-κB complex.
T93 291-418 Sentence denotes Moreover, Tat associated with the p65 subunit of NF-κB and increased the p65 DNA-binding affinity and transcriptional activity.
T94 419-563 Sentence denotes The arginine- and cysteine-rich domains of Tat were required for IκB-α and p65 association, respectively, and for sustaining the NF-κB activity.
T5 70-290 Sentence denotes We report that in single round HIV-1 infection, or single-pulse PMA stimulation, the HIV-1 Tat transactivator activated NF-κB by hijacking the inhibitor IκB-α and by preventing the repressor binding to the NF-κB complex.
T6 291-418 Sentence denotes Moreover, Tat associated with the p65 subunit of NF-κB and increased the p65 DNA-binding affinity and transcriptional activity.
T7 419-563 Sentence denotes The arginine- and cysteine-rich domains of Tat were required for IκB-α and p65 association, respectively, and for sustaining the NF-κB activity.

events-check-again

Id Subject Object Predicate Lexical cue
T881 617-626 Positive_regulation denotes activated
T883 638-648 Gene_expression denotes expression
T884 654-657 Protein denotes p65
T885 658-667 Positive_regulation denotes dependent
T886 680-685 Binding denotes bound
T887 693-699 Protein denotes MIP-1α
T888 700-714 Entity denotes NF-κB enhancer
T889 720-729 Positive_regulation denotes promoting
T890 720-729 Positive_regulation denotes promoting
T891 734-745 Binding denotes recruitment
T892 749-752 Protein denotes p65
T862 161-164 Protein denotes Tat
T863 199-208 Binding denotes hijacking
T864 223-228 Protein denotes IκB-α
T865 236-246 Negative_regulation denotes preventing
T866 261-268 Binding denotes binding
T867 301-304 Protein denotes Tat
T868 305-315 Binding denotes associated
T869 325-328 Protein denotes p65
T870 350-359 Positive_regulation denotes increased
T871 364-367 Protein denotes p65
T872 372-379 Binding denotes binding
T873 462-465 Protein denotes Tat
T874 471-479 Positive_regulation denotes required
T875 471-479 Positive_regulation denotes required
T876 484-489 Protein denotes IκB-α
T877 494-497 Protein denotes p65
T878 498-509 Binding denotes association
T879 588-598 Positive_regulation denotes responsive
T880 606-609 Protein denotes Tat
T882 631-637 Protein denotes MIP-1α
R616 T883 T885 themeOf expression,dependent
R617 T884 T885 causeOf p65,dependent
R618 T885 T881 themeOf dependent,activated
R619 T886 T889 causeOf bound,promoting
R620 T886 T890 causeOf bound,promoting
R621 T888 T886 themeOf NF-κB enhancer,bound
R622 T888 T887 partOf NF-κB enhancer,MIP-1α
R623 T888 T891 themeOf NF-κB enhancer,recruitment
R624 T891 T889 themeOf recruitment,promoting
R625 T892 T891 themeOf p65,recruitment
R743 T862 T863 themeOf Tat,hijacking
R744 T862 T865 causeOf Tat,preventing
R745 T864 T863 themeOf IκB-α,hijacking
R746 T864 T866 themeOf IκB-α,binding
R747 T866 T865 themeOf binding,preventing
R748 T867 T868 themeOf Tat,associated
R749 T867 T870 causeOf Tat,increased
R750 T869 T868 themeOf p65,associated
R751 T871 T872 themeOf p65,binding
R752 T872 T870 themeOf binding,increased
R753 T873 T878 themeOf Tat,association
R754 T876 T874 themeOf IκB-α,required
R755 T876 T878 themeOf IκB-α,association
R756 T877 T875 themeOf p65,required
R757 T880 T881 causeOf Tat,activated
R758 T880 T886 themeOf Tat,bound
R759 T882 T879 themeOf MIP-1α,responsive
R760 T882 T883 themeOf MIP-1α,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T912 3-15 Regulation denotes deregulation
T913 155-179 Protein denotes HIV-1 Tat transactivator
T914 190-195 Protein denotes NF-κB
T915 223-228 Protein denotes IκB-α
T916 276-289 Protein denotes NF-κB complex
T917 180-189 Positive_regulation denotes activated
T918 261-268 Binding denotes binding
T919 236-246 Negative_regulation denotes preventing
T920 301-304 Protein denotes Tat
T921 325-336 Protein denotes p65 subunit
T922 340-345 Protein denotes NF-κB
T923 364-367 Protein denotes p65
T924 305-315 Binding denotes associated
T925 462-465 Protein denotes Tat
T926 484-489 Protein denotes IκB-α
T927 494-497 Protein denotes p65
T928 548-553 Protein denotes NF-κB
T929 582-587 Protein denotes NF-κB
T930 606-609 Protein denotes Tat
T931 631-637 Protein denotes MIP-1α
T932 654-657 Protein denotes p65
T933 693-699 Protein denotes MIP-1α
T934 700-714 Protein denotes NF-κB enhancer
T935 749-752 Protein denotes p65
T942 638-648 Gene_expression denotes expression
T943 680-685 Binding denotes bound
T944 734-745 Binding denotes recruitment
T945 617-626 Positive_regulation denotes activated
R638 T913 T917 causeOf HIV-1 Tat transactivator,activated
R639 T914 T917 themeOf NF-κB,activated
R640 T916 T918 themeOf NF-κB complex,binding
R641 T918 T919 themeOf binding,preventing
R642 T920 T924 themeOf Tat,associated
R643 T921 T924 themeOf p65 subunit,associated
R644 T930 T943 themeOf Tat,bound
R645 T930 T945 causeOf Tat,activated
R646 T931 T942 themeOf MIP-1α,expression
R647 T934 T943 themeOf NF-κB enhancer,bound
R648 T935 T944 themeOf p65,recruitment
R650 T942 T945 themeOf expression,activated

test2

Id Subject Object Predicate Lexical cue Negation
T78 749-752 Protein denotes p65
T50 161-164 Protein denotes Tat
T51 199-208 Binding denotes hijacking
T52 213-222 Negative_regulation denotes inhibitor
T53 223-228 Protein denotes IκB-α
T54 261-268 Binding denotes binding
T55 301-304 Protein denotes Tat
T56 305-315 Binding denotes associated
T57 325-328 Protein denotes p65
T58 350-359 Positive_regulation denotes increased
T59 364-367 Protein denotes p65
T60 372-379 Binding denotes binding
T61 445-446 Entity denotes -
T62 462-465 Protein denotes Tat
T63 471-479 Positive_regulation denotes required
T64 484-489 Protein denotes IκB-α true
T65 494-497 Protein denotes p65
T66 498-509 Binding denotes association
T67 606-609 Protein denotes Tat
T68 617-626 Positive_regulation denotes activated
T69 631-637 Protein denotes MIP-1α
T70 638-648 Gene_expression denotes expression
T71 654-657 Protein denotes p65
T72 658-667 Regulation denotes dependent
T73 680-685 Binding denotes bound
T74 693-699 Protein denotes MIP-1α
T75 700-714 Entity denotes NF-κB enhancer
T76 720-729 Positive_regulation denotes promoting
T77 734-745 Binding denotes recruitment
R37 T78 T77 themeOf p65,recruitment
R665 T62 T66 themeOf Tat,association
R666 T64 T66 themeOf IκB-α,association
R667 T64 T63 themeOf IκB-α,required
R669 T65 T63 themeOf p65,required
R670 T66 T63 themeOf association,required
R671 T67 T73 themeOf Tat,bound
R672 T67 T68 causeOf Tat,activated
R673 T69 T70 themeOf MIP-1α,expression
R674 T70 T68 themeOf expression,activated
R675 T72 T68 themeOf dependent,activated
R676 T73 T76 causeOf bound,promoting
R677 T75 T77 themeOf NF-κB enhancer,recruitment
R678 T75 T73 themeOf NF-κB enhancer,bound
R679 T75 T74 partOf NF-κB enhancer,MIP-1α
R680 T77 T76 themeOf recruitment,promoting
R656 T50 T51 themeOf Tat,hijacking
R657 T53 T51 themeOf IκB-α,hijacking
R658 T53 T54 themeOf IκB-α,binding
R659 T53 T52 themeOf IκB-α,inhibitor
R660 T55 T58 causeOf Tat,increased
R661 T55 T56 themeOf Tat,associated
R662 T57 T56 themeOf p65,associated
R663 T59 T60 themeOf p65,binding
R664 T60 T58 themeOf binding,increased
R668 T65 T66 themeOf p65,association

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T98 498-509 Binding denotes association
T99 588-598 Positive_regulation denotes responsive
T100 617-626 Positive_regulation denotes activated
T101 658-667 Positive_regulation denotes dependent
T102 638-648 Gene_expression denotes expression
T103 680-685 Binding denotes bound
T104 720-729 Positive_regulation denotes promoting
T105 734-745 Binding denotes recruitment
T106 720-729 Positive_regulation denotes promoting
T108 199-208 Binding denotes hijacking
T110 236-246 Negative_regulation denotes preventing
T111 261-268 Binding denotes binding
T112 305-315 Binding denotes associated
T113 350-359 Positive_regulation denotes increased
T114 372-379 Binding denotes binding
T115 471-479 Positive_regulation denotes required
T116 471-479 Positive_regulation denotes required
T118 484-489 Protein denotes IκB-α
T119 494-497 Protein denotes p65
T120 606-609 Protein denotes Tat
T121 654-657 Protein denotes p65
T122 693-699 Protein denotes MIP-1α
T123 749-752 Protein denotes p65
T135 700-714 Entity denotes NF-κB enhancer
T136 223-228 Protein denotes IκB-α
T137 301-304 Protein denotes Tat
T138 325-328 Protein denotes p65
T139 364-367 Protein denotes p65
T140 462-465 Protein denotes Tat
T141 631-637 Protein denotes MIP-1α
T134 161-164 Protein denotes Tat
R72 T141 T99 themeOf MIP-1α,responsive
R73 T141 T102 themeOf MIP-1α,expression
R683 T134 T108 themeOf Tat,hijacking
R684 T134 T110 causeOf Tat,preventing
R43 T101 T100 themeOf dependent,activated
R44 T102 T101 themeOf expression,dependent
R45 T103 T104 causeOf bound,promoting
R46 T103 T106 causeOf bound,promoting
R47 T105 T104 themeOf recruitment,promoting
R49 T111 T110 themeOf binding,preventing
R50 T114 T113 themeOf binding,increased
R52 T118 T115 themeOf IκB-α,required
R53 T118 T98 themeOf IκB-α,association
R54 T119 T116 themeOf p65,required
R55 T120 T100 causeOf Tat,activated
R56 T120 T103 themeOf Tat,bound
R57 T121 T101 causeOf p65,dependent
R58 T123 T105 themeOf p65,recruitment
R62 T135 T103 themeOf NF-κB enhancer,bound
R63 T135 T122 partOf NF-κB enhancer,MIP-1α
R64 T135 T105 themeOf NF-κB enhancer,recruitment
R65 T136 T108 themeOf IκB-α,hijacking
R66 T136 T111 themeOf IκB-α,binding
R67 T137 T112 themeOf Tat,associated
R68 T137 T113 causeOf Tat,increased
R69 T138 T112 themeOf p65,associated
R70 T139 T114 themeOf p65,binding
R71 T140 T98 themeOf Tat,association

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T364 161-164 P04605 denotes Tat
T365 161-164 P04610 denotes Tat
T366 161-164 P04608 denotes Tat
T367 161-164 Q8UMQ1 denotes Tat
T368 301-304 P04610 denotes Tat
T369 301-304 P04608 denotes Tat
T370 301-304 P04605 denotes Tat
T371 301-304 Q8UMQ1 denotes Tat
T372 325-328 Q04206 denotes p65
T373 325-328 P21579 denotes p65
T374 364-367 Q04206 denotes p65
T375 364-367 P21579 denotes p65
T376 462-465 P04610 denotes Tat
T377 462-465 Q8UMQ1 denotes Tat
T378 462-465 P04605 denotes Tat
T379 462-465 P04608 denotes Tat
T380 494-497 P21579 denotes p65
T381 494-497 Q04206 denotes p65
T382 606-609 P04608 denotes Tat
T383 606-609 P04610 denotes Tat
T384 606-609 Q8UMQ1 denotes Tat
T385 606-609 P04605 denotes Tat
T386 631-637 P10147 denotes MIP-1α
T387 654-657 P21579 denotes p65
T388 654-657 Q04206 denotes p65
T389 693-699 P10147 denotes MIP-1α
T390 749-752 P21579 denotes p65
T391 749-752 Q04206 denotes p65