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PMC:3333881 / 271-514 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T182 0-3 DT denotes the
T183 4-9 NN denotes NF-κB
T184 10-22 NN denotes deregulation
T185 23-25 IN denotes by
T186 26-31 NN denotes HIV-1
T187 32-35 VB denotes are
T188 36-44 JJ denotes relevant
T189 45-48 IN denotes for
T190 49-55 JJ denotes immune
T191 56-67 NN denotes dysfunction
T192 68-70 IN denotes in
T193 71-75 NN denotes AIDS
T194 77-79 PRP denotes We
T195 80-86 VB denotes report
T196 87-91 IN denotes that
T197 92-94 IN denotes in
T198 95-101 JJ denotes single
T199 102-107 JJ denotes round
T200 108-113 NN denotes HIV-1
T201 114-123 NN denotes infection
T202 123-124 -COMMA- denotes ,
T203 125-127 CC denotes or
T204 128-140 JJ denotes single-pulse
T205 141-144 NN denotes PMA
T206 145-156 NN denotes stimulation
T207 156-157 -COMMA- denotes ,
T208 158-161 DT denotes the
T209 162-167 NN denotes HIV-1
T210 168-171 NN denotes Tat
T211 172-186 NN denotes transactivator
T212 187-196 VB denotes activated
T213 197-202 NN denotes NF-κB
T214 203-205 IN denotes by
T215 206-215 VB denotes hijacking
T216 216-219 DT denotes the
T217 220-229 NN denotes inhibitor
T218 230-235 NN denotes IκB-α
T219 236-239 CC denotes and
T220 240-242 IN denotes by
R116 T184 T182 arg1Of deregulation,the
R117 T184 T183 arg1Of deregulation,NF-κB
R118 T184 T185 arg1Of deregulation,by
R119 T186 T185 arg2Of HIV-1,by
R120 T188 T187 arg2Of relevant,are
R121 T188 T189 arg1Of relevant,for
R122 T191 T189 arg2Of dysfunction,for
R123 T191 T190 arg1Of dysfunction,immune
R124 T191 T192 arg1Of dysfunction,in
R125 T193 T192 arg2Of AIDS,in
R126 T194 T195 arg1Of We,report
R127 T201 T198 arg1Of infection,single
R128 T201 T199 arg1Of infection,round
R129 T201 T200 arg1Of infection,HIV-1
R130 T201 T203 arg1Of infection,or
R131 T203 T197 arg2Of or,in
R132 T203 T202 arg1Of or,","
R133 T206 T203 arg2Of stimulation,or
R134 T206 T204 arg1Of stimulation,single-pulse
R135 T206 T205 arg1Of stimulation,PMA
R136 T211 T208 arg1Of transactivator,the
R137 T211 T209 arg1Of transactivator,HIV-1
R138 T211 T210 arg1Of transactivator,Tat
R139 T211 T212 arg1Of transactivator,activated
R140 T211 T215 arg1Of transactivator,hijacking
R142 T212 T195 arg2Of activated,report
R143 T212 T196 arg1Of activated,that
R144 T212 T197 arg1Of activated,in
R145 T212 T207 arg1Of activated,","
R146 T212 T214 arg1Of activated,by
R147 T212 T220 arg1Of activated,by
R148 T213 T212 arg2Of NF-κB,activated
R149 T214 T219 arg1Of by,and
R150 T215 T214 arg2Of hijacking,by
R151 T218 T215 arg2Of IκB-α,hijacking
R152 T218 T216 arg1Of IκB-α,the
R153 T218 T217 arg1Of IκB-α,inhibitor
R154 T220 T219 arg2Of by,and

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T357 230-235 Antecedent denotes IκB-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T444 0-3 DT denotes the
T445 4-9 JJ denotes NF-κB
T446 10-22 NN denotes deregulation
T447 23-25 IN denotes by
T448 26-31 NNP denotes HIV-1
T449 32-35 VBP denotes are
T450 36-44 JJ denotes relevant
T451 45-48 IN denotes for
T452 49-55 JJ denotes immune
T453 56-67 NN denotes dysfunction
T454 68-70 IN denotes in
T455 71-75 NNP denotes AIDS
T456 75-76 . denotes .
T457 77-79 PRP denotes We
T458 80-86 VBP denotes report
T459 87-91 IN denotes that
T460 92-94 IN denotes in
T461 95-101 JJ denotes single
T462 102-107 NN denotes round
T463 108-113 NN denotes HIV-1
T464 114-123 NN denotes infection
T465 123-124 , denotes ,
T466 125-127 CC denotes or
T467 128-140 JJ denotes single-pulse
T468 141-144 NNP denotes PMA
T469 145-156 NN denotes stimulation
T470 156-157 , denotes ,
T471 158-161 DT denotes the
T472 162-167 NNP denotes HIV-1
T473 168-171 NNP denotes Tat
T474 172-186 NN denotes transactivator
T475 187-196 VBD denotes activated
T476 197-202 JJ denotes NF-κB
T477 203-205 IN denotes by
T478 206-215 VBG denotes hijacking
T479 216-219 DT denotes the
T480 220-229 NN denotes inhibitor
T481 230-235 NN denotes IκB-α
T482 236-239 CC denotes and
T483 240-242 IN denotes by
R335 T444 T446 det the,deregulation
R336 T445 T446 amod NF-κB,deregulation
R338 T447 T446 prep by,deregulation
R339 T448 T447 pobj HIV-1,by
R340 T449 T449 ROOT are,are
R341 T450 T449 acomp relevant,are
R342 T451 T450 prep for,relevant
R343 T452 T453 amod immune,dysfunction
R344 T453 T451 pobj dysfunction,for
R345 T454 T453 prep in,dysfunction
R346 T455 T454 pobj AIDS,in
R347 T456 T449 punct .,are
R348 T457 T458 nsubj We,report
R349 T458 T458 ROOT report,report
R350 T459 T475 mark that,activated
R351 T460 T475 prep in,activated
R352 T461 T464 amod single,infection
R353 T462 T464 compound round,infection
R354 T463 T464 compound HIV-1,infection
R355 T464 T460 pobj infection,in
R356 T465 T460 punct ",",in
R357 T466 T460 cc or,in
R358 T467 T469 amod single-pulse,stimulation
R359 T468 T469 compound PMA,stimulation
R360 T469 T475 dep stimulation,activated
R361 T470 T475 punct ",",activated
R362 T471 T474 det the,transactivator
R363 T472 T474 compound HIV-1,transactivator
R364 T473 T474 compound Tat,transactivator
R365 T474 T475 nsubj transactivator,activated
R366 T475 T458 ccomp activated,report
R367 T476 T475 dobj NF-κB,activated
R368 T477 T475 prep by,activated
R369 T478 T477 pcomp hijacking,by
R370 T479 T481 det the,IκB-α
R371 T480 T481 compound inhibitor,IκB-α
R372 T481 T478 dobj IκB-α,hijacking
R373 T482 T477 cc and,by
R374 T483 T477 conj by,by

GO-BP

Id Subject Object Predicate Lexical cue
T634 187-202 http://purl.obolibrary.org/obo/GO_0051092 denotes activated NF-κB

events-check-again

Id Subject Object Predicate Lexical cue
T862 168-171 Protein denotes Tat
T863 206-215 Binding denotes hijacking
T864 230-235 Protein denotes IκB-α
R743 T862 T863 themeOf Tat,hijacking
R745 T864 T863 themeOf IκB-α,hijacking

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T911 4-9 Protein denotes NF-κB
T912 10-22 Regulation denotes deregulation
T913 162-186 Protein denotes HIV-1 Tat transactivator
T914 197-202 Protein denotes NF-κB
T915 230-235 Protein denotes IκB-α
T917 187-196 Positive_regulation denotes activated
R637 T911 T912 themeOf NF-κB,deregulation
R638 T913 T917 causeOf HIV-1 Tat transactivator,activated
R639 T914 T917 themeOf NF-κB,activated

test2

Id Subject Object Predicate Lexical cue
T50 168-171 Protein denotes Tat
T51 206-215 Binding denotes hijacking
T52 220-229 Negative_regulation denotes inhibitor
T53 230-235 Protein denotes IκB-α
R656 T50 T51 themeOf Tat,hijacking
R657 T53 T51 themeOf IκB-α,hijacking
R659 T53 T52 themeOf IκB-α,inhibitor

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T108 206-215 Binding denotes hijacking
T136 230-235 Protein denotes IκB-α
T134 168-171 Protein denotes Tat
R683 T134 T108 themeOf Tat,hijacking
R65 T136 T108 themeOf IκB-α,hijacking

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T364 168-171 P04605 denotes Tat
T365 168-171 P04610 denotes Tat
T366 168-171 P04608 denotes Tat
T367 168-171 Q8UMQ1 denotes Tat