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PMC:3333881 / 26088-26258 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11901 0-5 NNP denotes IκB-α
T11902 6-15 VB denotes inhibited
T11903 16-19 DT denotes the
T11904 20-33 JJ denotes p65-dependent
T11905 34-44 NN denotes expression
T11906 45-47 IN denotes of
T11907 48-51 DT denotes the
T11908 52-62 NN denotes luciferase
T11909 63-67 NN denotes gene
T11910 67-68 -COMMA- denotes ,
T11911 69-74 WDT denotes which
T11912 75-78 VB denotes was
T11913 79-87 VB denotes restored
T11914 88-90 IN denotes in
T11915 91-92 DT denotes a
T11916 93-107 JJ denotes dose-dependent
T11917 108-114 NN denotes manner
T11918 115-117 IN denotes by
T11919 118-127 JJ denotes wild-type
T11920 128-131 NN denotes Tat
T11921 131-132 -COMMA- denotes ,
T11922 133-136 CC denotes and
T11923 137-140 RB denotes not
T11924 141-143 IN denotes by
T11925 144-147 NN denotes Tat
T11926 148-149 NN denotes R
T11927 149-150 -LRB- denotes (
T11928 150-155 CD denotes 49–57
T11929 155-156 -RRB- denotes )
T11930 156-157 NN denotes A
T11931 158-159 -LRB- denotes (
T11932 159-165 NN denotes Figure
T11933 166-168 NN denotes 3E
T11934 168-169 -RRB- denotes )
R9751 T11905 T11902 arg2Of expression,inhibited
R9752 T11905 T11903 arg1Of expression,the
R9753 T11905 T11904 arg1Of expression,p65-dependent
R9754 T11905 T11906 arg1Of expression,of
R9755 T11905 T11924 arg1Of expression,by
R9756 T11906 T11922 arg1Of of,and
R9757 T11909 T11906 arg2Of gene,of
R9758 T11909 T11907 arg1Of gene,the
R9759 T11909 T11908 arg1Of gene,luciferase
R9760 T11909 T11910 arg1Of gene,","
R9761 T11909 T11911 arg1Of gene,which
R9762 T11909 T11912 arg1Of gene,was
R9763 T11909 T11913 arg2Of gene,restored
R9764 T11913 T11912 arg2Of restored,was
R9765 T11913 T11914 arg1Of restored,in
R9766 T11917 T11914 arg2Of manner,in
R9767 T11917 T11915 arg1Of manner,a
R9768 T11917 T11916 arg1Of manner,dose-dependent
R9769 T11920 T11913 arg1Of Tat,restored
R9770 T11920 T11918 arg2Of Tat,by
R9771 T11920 T11919 arg1Of Tat,wild-type
R9772 T11922 T11921 arg1Of and,","
R9773 T11924 T11922 arg2Of by,and
R9774 T11924 T11923 arg1Of by,not
R9775 T11926 T11925 arg1Of R,Tat
R9776 T11926 T11927 arg1Of R,(
R9777 T11928 T11927 arg2Of 49–57,(
R9778 T11929 T11927 arg3Of ),(
R9779 T11930 T11924 arg2Of A,by
R9780 T11930 T11926 arg1Of A,R
R9781 T11930 T11931 arg1Of A,(
R9782 T11933 T11931 arg2Of 3E,(
R9783 T11933 T11932 arg1Of 3E,Figure
R9784 T11934 T11931 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12387 0-5 JJ denotes IκB-α
T12388 6-15 VBD denotes inhibited
T12389 16-19 DT denotes the
T12390 20-33 JJ denotes p65-dependent
T12391 34-44 NN denotes expression
T12392 45-47 IN denotes of
T12393 48-51 DT denotes the
T12394 52-62 NN denotes luciferase
T12395 63-67 NN denotes gene
T12396 67-68 , denotes ,
T12397 69-74 WDT denotes which
T12398 75-78 VBD denotes was
T12399 79-87 VBN denotes restored
T12400 88-90 IN denotes in
T12401 91-92 DT denotes a
T12402 93-107 JJ denotes dose-dependent
T12403 108-114 NN denotes manner
T12404 115-117 IN denotes by
T12405 118-127 JJ denotes wild-type
T12406 128-131 NNP denotes Tat
T12407 131-132 , denotes ,
T12408 133-136 CC denotes and
T12409 137-140 RB denotes not
T12410 141-143 IN denotes by
T12411 144-147 NNP denotes Tat
T12412 148-149 NNP denotes R
T12413 149-150 -LRB- denotes (
T12414 150-152 CD denotes 49
T12415 153-155 CD denotes 57
T12416 155-156 -RRB- denotes )
T12417 156-157 DT denotes A
T12418 158-159 -LRB- denotes (
T12419 159-165 NN denotes Figure
T12420 166-168 CD denotes 3E
T12421 168-169 -RRB- denotes )
T12422 169-170 . denotes .
R10127 T12387 T12388 nsubj IκB-α,inhibited
R10128 T12388 T12388 ROOT inhibited,inhibited
R10129 T12389 T12391 det the,expression
R10130 T12390 T12391 amod p65-dependent,expression
R10131 T12391 T12388 dobj expression,inhibited
R10132 T12392 T12391 prep of,expression
R10133 T12393 T12395 det the,gene
R10134 T12394 T12395 compound luciferase,gene
R10135 T12395 T12392 pobj gene,of
R10136 T12396 T12395 punct ",",gene
R10137 T12397 T12399 nsubjpass which,restored
R10138 T12398 T12399 auxpass was,restored
R10139 T12399 T12395 relcl restored,gene
R10140 T12400 T12399 prep in,restored
R10141 T12401 T12403 det a,manner
R10142 T12402 T12403 amod dose-dependent,manner
R10143 T12403 T12400 pobj manner,in
R10144 T12404 T12399 agent by,restored
R10145 T12405 T12406 amod wild-type,Tat
R10146 T12406 T12404 pobj Tat,by
R10147 T12407 T12399 punct ",",restored
R10148 T12408 T12399 cc and,restored
R10149 T12409 T12410 neg not,by
R10150 T12410 T12399 conj by,restored
R10151 T12411 T12412 compound Tat,R
R10152 T12412 T12410 pobj R,by
R10153 T12413 T12412 punct (,R
R10154 T12414 T12412 appos 49,R
R10155 T12415 T12412 appos 57,R
R10156 T12416 T12412 punct ),R
R10157 T12417 T12419 det A,Figure
R10158 T12418 T12419 punct (,Figure
R10159 T12419 T12419 ROOT Figure,Figure
R10160 T12420 T12419 nummod 3E,Figure
R10161 T12421 T12419 punct ),Figure
R10162 T12422 T12419 punct .,Figure

sentences

Id Subject Object Predicate Lexical cue
T163 0-170 Sentence denotes IκB-α inhibited the p65-dependent expression of the luciferase gene, which was restored in a dose-dependent manner by wild-type Tat, and not by Tat R(49–57)A (Figure 3E).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T12978 0-5 Protein denotes IκB-α
T12979 6-15 Negative_regulation denotes inhibited
T12980 20-23 Protein denotes p65
T12981 24-33 Positive_regulation denotes dependent
T12982 34-44 Gene_expression denotes expression
T12983 52-62 Protein denotes luciferase
T12984 79-87 Negative_regulation denotes restored true
T12985 79-87 Negative_regulation denotes restored true
T12986 128-131 Protein denotes Tat
T12987 144-157 Protein denotes Tat R(49–57)A
R10533 T12978 T12979 causeOf IκB-α,inhibited
R10534 T12979 T12984 themeOf inhibited,restored
R10535 T12979 T12985 themeOf inhibited,restored
R10536 T12980 T12981 causeOf p65,dependent
R10537 T12981 T12979 themeOf dependent,inhibited
R10538 T12982 T12981 themeOf expression,dependent
R10539 T12983 T12982 themeOf luciferase,expression
R10540 T12986 T12984 causeOf Tat,restored
R10541 T12987 T12985 causeOf Tat R(49–57)A,restored

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T13062 0-5 Protein denotes IκB-α
T13063 20-23 Protein denotes p65
T13064 52-67 Protein denotes luciferase gene
T13065 144-149 Protein denotes Tat R
T13066 34-44 Gene_expression denotes expression
T13067 6-15 Negative_regulation denotes inhibited
T13068 24-33 Positive_regulation denotes dependent
R10590 T13062 T13067 causeOf IκB-α,inhibited
R10591 T13063 T13068 causeOf p65,dependent
R10592 T13064 T13066 themeOf luciferase gene,expression
R10593 T13066 T13067 themeOf expression,inhibited
R10594 T13066 T13068 themeOf expression,dependent

test2

Id Subject Object Predicate Lexical cue
T11490 0-5 Protein denotes IκB-α
T11491 6-15 Negative_regulation denotes inhibited
T11492 20-23 Protein denotes p65
T11493 24-33 Positive_regulation denotes dependent
T11494 34-44 Gene_expression denotes expression
T11495 52-62 Protein denotes luciferase
T11496 98-107 Regulation denotes dependent
T11497 128-131 Protein denotes Tat
T11498 144-157 Protein denotes Tat R(49–57)A
R9370 T11490 T11491 causeOf IκB-α,inhibited
R9371 T11491 T11496 themeOf inhibited,dependent
R9372 T11492 T11493 causeOf p65,dependent
R9373 T11493 T11491 themeOf dependent,inhibited
R9374 T11493 T11496 themeOf dependent,dependent
R9375 T11494 T11493 themeOf expression,dependent
R9376 T11494 T11496 themeOf expression,dependent
R9377 T11495 T11494 themeOf luciferase,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T11580 0-5 Protein denotes IκB-α
T11581 6-15 Negative_regulation denotes inhibited
T11582 20-23 Protein denotes p65
T11583 24-33 Positive_regulation denotes dependent
T11584 34-44 Gene_expression denotes expression
T11585 52-62 Protein denotes luciferase
T11586 79-87 Negative_regulation denotes restored true
T11587 79-87 Negative_regulation denotes restored true
T11588 128-131 Protein denotes Tat
T11589 144-157 Protein denotes Tat R(49–57)A
R9445 T11588 T11586 causeOf Tat,restored
R9446 T11589 T11587 causeOf Tat R(49–57)A,restored
R9438 T11580 T11581 causeOf IκB-α,inhibited
R9439 T11581 T11586 themeOf inhibited,restored
R9440 T11581 T11587 themeOf inhibited,restored
R9441 T11582 T11583 causeOf p65,dependent
R9442 T11583 T11581 themeOf dependent,inhibited
R9443 T11584 T11583 themeOf expression,dependent
R9444 T11585 T11584 themeOf luciferase,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12058 20-23 Q04206 denotes p65
T12059 20-23 P21579 denotes p65
T12060 52-62 P08659 denotes luciferase
T12061 128-131 P04610 denotes Tat
T12062 128-131 P04608 denotes Tat
T12063 128-131 P04605 denotes Tat
T12064 128-131 Q8UMQ1 denotes Tat
T12065 144-147 Q8UMQ1 denotes Tat
T12066 144-147 P04610 denotes Tat
T12067 144-147 P04605 denotes Tat
T12068 144-147 P04608 denotes Tat