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PMC:3333881 / 24778-25073 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25470 0-11 NN denotes DNA/protein
T25471 12-21 NN denotes complexes
T25472 22-26 VB denotes were
T25473 27-30 VB denotes run
T25474 31-33 IN denotes on
T25475 34-35 CD denotes 6
T25476 35-36 NN denotes %
T25477 37-45 NN denotes PAGE–TBE
T25478 46-49 CC denotes and
T25479 50-58 VB denotes analysed
T25480 59-61 IN denotes by
T25481 62-78 NN denotes autoradiography.
T25482 79-80 -LRB- denotes (
T25483 80-81 NN denotes E
T25484 81-82 -RRB- denotes )
T25485 83-99 NN denotes p50−/−p65−/−MEFs
T25486 100-101 -LRB- denotes (
T25487 101-108 CD denotes 3 × 105
T25488 109-114 NN denotes cells
T25489 114-115 -RRB- denotes )
T25490 116-120 VB denotes were
T25491 121-132 VB denotes transfected
T25492 133-137 IN denotes with
T25493 138-144 NN denotes pκBLuc
T25494 145-146 -LRB- denotes (
T25495 146-152 NN denotes 0.5 µg
T25496 152-153 -RRB- denotes )
T25497 154-157 CC denotes and
T25498 158-167 JJ denotes pSV-β-Gal
T25499 168-169 -LRB- denotes (
T25500 169-175 CD denotes 0.1 µg
T25501 175-176 -RRB- denotes )
T25502 177-181 IN denotes with
T25503 182-184 CC denotes or
T25504 185-192 IN denotes without
T25505 193-204 NN denotes pRc/CMV-p65
T25506 205-206 -LRB- denotes (
T25507 206-212 CD denotes 0.5 µg
T25508 212-213 -RRB- denotes )
T25509 213-214 -COMMA- denotes ,
T25510 215-229 NN denotes pCMV4-HA-IκB-α
T25511 230-231 -LRB- denotes (
T25512 231-237 CD denotes 0.5 µg
T25513 237-238 -RRB- denotes )
T25514 238-239 -COMMA- denotes ,
T25515 240-251 NN denotes p3xFLAG-Tat
T25516 252-254 CC denotes or
T25517 255-266 NN denotes p3xFLAG-Tat
T25518 267-268 NN denotes R
T25519 268-269 -LRB- denotes (
T25520 269-274 CD denotes 49–57
T25521 274-275 -RRB- denotes )
T25522 275-276 NN denotes A
T25523 277-278 -LRB- denotes (
T25524 278-281 CD denotes 0.5
T25525 281-282 -COMMA- denotes ,
T25526 283-284 CD denotes 1
T25527 285-288 CC denotes and
T25528 289-293 NN denotes 2 µg
T25529 293-294 -RRB- denotes )
R20302 T25471 T25470 arg1Of complexes,DNA/protein
R20303 T25471 T25472 arg1Of complexes,were
R20304 T25471 T25473 arg2Of complexes,run
R20305 T25471 T25479 arg2Of complexes,analysed
R20306 T25473 T25474 arg1Of run,on
R20307 T25473 T25478 arg1Of run,and
R20308 T25475 T25476 arg1Of 6,%
R20309 T25477 T25474 arg2Of PAGE–TBE,on
R20310 T25477 T25475 arg1Of PAGE–TBE,6
R20311 T25478 T25472 arg2Of and,were
R20312 T25479 T25478 arg2Of analysed,and
R20313 T25481 T25479 arg1Of autoradiography.,analysed
R20314 T25481 T25480 arg2Of autoradiography.,by
R20315 T25481 T25482 arg1Of autoradiography.,(
R20316 T25481 T25490 modOf autoradiography.,were
R20317 T25483 T25482 arg2Of E,(
R20318 T25484 T25482 arg3Of ),(
R20319 T25485 T25486 arg1Of p50−/−p65−/−MEFs,(
R20320 T25485 T25490 arg1Of p50−/−p65−/−MEFs,were
R20321 T25485 T25491 arg2Of p50−/−p65−/−MEFs,transfected
R20322 T25488 T25486 arg2Of cells,(
R20323 T25488 T25487 arg1Of cells,3 × 105
R20324 T25489 T25486 arg3Of ),(
R20325 T25491 T25490 arg2Of transfected,were
R20326 T25491 T25492 arg1Of transfected,with
R20327 T25493 T25494 arg1Of pκBLuc,(
R20328 T25493 T25497 arg1Of pκBLuc,and
R20329 T25495 T25494 arg2Of 0.5 µg,(
R20330 T25496 T25494 arg3Of ),(
R20331 T25497 T25492 arg2Of and,with
R20332 T25498 T25499 arg1Of pSV-β-Gal,(
R20333 T25498 T25502 arg1Of pSV-β-Gal,with
R20334 T25498 T25504 arg1Of pSV-β-Gal,without
R20335 T25500 T25499 arg2Of 0.1 µg,(
R20336 T25501 T25499 arg3Of ),(
R20337 T25502 T25503 arg1Of with,or
R20338 T25504 T25503 arg2Of without,or
R20339 T25505 T25506 arg1Of pRc/CMV-p65,(
R20340 T25505 T25509 arg1Of pRc/CMV-p65,","
R20341 T25507 T25506 arg2Of 0.5 µg,(
R20342 T25508 T25506 arg3Of ),(
R20343 T25509 T25514 arg1Of ",",","
R20344 T25510 T25509 arg2Of pCMV4-HA-IκB-α,","
R20345 T25510 T25511 arg1Of pCMV4-HA-IκB-α,(
R20346 T25512 T25511 arg2Of 0.5 µg,(
R20347 T25513 T25511 arg3Of ),(
R20348 T25514 T25516 arg1Of ",",or
R20349 T25515 T25514 arg2Of p3xFLAG-Tat,","
R20350 T25516 T25502 arg2Of or,with
R20351 T25516 T25504 arg2Of or,without
R20352 T25518 T25516 arg2Of R,or
R20353 T25518 T25517 arg1Of R,p3xFLAG-Tat
R20354 T25518 T25519 arg1Of R,(
R20355 T25520 T25519 arg2Of 49–57,(
R20356 T25521 T25519 arg3Of ),(
R20357 T25522 T25497 arg2Of A,and
R20358 T25522 T25498 arg1Of A,pSV-β-Gal
R20359 T25522 T25523 arg1Of A,(
R20360 T25524 T25525 arg1Of 0.5,","
R20361 T25525 T25527 arg1Of ",",and
R20362 T25526 T25525 arg2Of 1,","
R20363 T25527 T25523 arg2Of and,(
R20364 T25528 T25527 arg2Of 2 µg,and
R20365 T25529 T25523 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25956 0-11 NNP denotes DNA/protein
T25957 12-21 NNS denotes complexes
T25958 22-26 VBD denotes were
T25959 27-30 VBN denotes run
T25960 31-33 IN denotes on
T25961 34-35 CD denotes 6
T25962 35-36 NN denotes %
T25963 37-41 NN denotes PAGE
T25964 42-45 NNP denotes TBE
T25965 46-49 CC denotes and
T25966 50-58 VBN denotes analysed
T25967 59-61 IN denotes by
T25968 62-77 NN denotes autoradiography
T25969 77-78 . denotes .
T25970 79-80 -LRB- denotes (
T25971 80-81 NNP denotes E
T25972 81-82 -RRB- denotes )
T25973 83-86 FW denotes p50
T25974 86-87 FW denotes −
T25975 87-88 FW denotes /
T25976 88-89 FW denotes −
T25977 89-92 FW denotes p65
T25978 92-93 FW denotes −
T25979 93-94 FW denotes /
T25980 94-95 FW denotes −
T25981 95-99 NNS denotes MEFs
T25982 100-101 -LRB- denotes (
T25983 101-102 CD denotes 3
T25984 103-104 CD denotes ×
T25985 105-108 CD denotes 105
T25986 109-114 NNS denotes cells
T25987 114-115 -RRB- denotes )
T25988 116-120 VBD denotes were
T25989 121-132 VBN denotes transfected
T25990 133-137 IN denotes with
T25991 138-144 NNP denotes pκBLuc
T25992 145-146 -LRB- denotes (
T25993 146-149 CD denotes 0.5
T25994 150-152 NN denotes µg
T25995 152-153 -RRB- denotes )
T25996 154-157 CC denotes and
T25997 158-167 JJ denotes pSV-β-Gal
T25998 168-169 -LRB- denotes (
T25999 169-172 CD denotes 0.1
T26000 173-175 NN denotes µg
T26001 175-176 -RRB- denotes )
T26002 177-181 IN denotes with
T26003 182-184 CC denotes or
T26004 185-192 IN denotes without
T26005 193-202 NNP denotes pRc/CMV-p
T26006 202-204 CD denotes 65
T26007 205-206 -LRB- denotes (
T26008 206-209 CD denotes 0.5
T26009 210-212 NN denotes µg
T26010 212-213 -RRB- denotes )
T26011 213-214 , denotes ,
T26012 215-229 NN denotes pCMV4-HA-IκB-α
T26013 230-231 -LRB- denotes (
T26014 231-234 CD denotes 0.5
T26015 235-237 NN denotes µg
T26016 237-238 -RRB- denotes )
T26017 238-239 , denotes ,
T26018 240-251 NN denotes p3xFLAG-Tat
T26019 252-254 CC denotes or
T26020 255-266 NN denotes p3xFLAG-Tat
T26021 267-268 NN denotes R
T26022 268-269 -LRB- denotes (
T26023 269-271 CD denotes 49
T26024 272-274 CD denotes 57
T26025 274-275 -RRB- denotes )
T26026 275-276 DT denotes A
T26027 277-278 -LRB- denotes (
T26028 278-281 CD denotes 0.5
T26029 281-282 , denotes ,
T26030 283-284 CD denotes 1
T26031 285-288 CC denotes and
T26032 289-290 CD denotes 2
T26033 291-293 NN denotes µg
T26034 293-294 -RRB- denotes )
T26035 294-295 . denotes .
R20711 T25956 T25957 compound DNA/protein,complexes
R20712 T25957 T25959 nsubjpass complexes,run
R20713 T25958 T25959 auxpass were,run
R20714 T25959 T25959 ROOT run,run
R20715 T25960 T25959 prep on,run
R20716 T25961 T25962 nummod 6,%
R20717 T25962 T25963 compound %,PAGE
R20718 T25963 T25960 pobj PAGE,on
R20719 T25964 T25963 appos TBE,PAGE
R20720 T25965 T25959 cc and,run
R20721 T25966 T25959 conj analysed,run
R20722 T25967 T25966 agent by,analysed
R20723 T25968 T25967 pobj autoradiography,by
R20724 T25969 T25959 punct .,run
R20725 T25970 T25989 punct (,transfected
R20726 T25971 T25980 dep E,−
R20727 T25972 T25973 punct ),p50
R20728 T25973 T25980 dep p50,−
R20729 T25974 T25980 dep −,−
R20730 T25975 T25980 dep /,−
R20731 T25976 T25980 dep −,−
R20732 T25977 T25980 dep p65,−
R20733 T25978 T25980 dep −,−
R20734 T25979 T25980 dep /,−
R20735 T25980 T25981 nmod −,MEFs
R20736 T25981 T25989 nsubjpass MEFs,transfected
R20737 T25982 T25981 punct (,MEFs
R20738 T25983 T25986 nummod 3,cells
R20739 T25984 T25986 nummod ×,cells
R20740 T25985 T25986 nummod 105,cells
R20741 T25986 T25981 appos cells,MEFs
R20742 T25987 T25981 punct ),MEFs
R20743 T25988 T25989 auxpass were,transfected
R20744 T25989 T25989 ROOT transfected,transfected
R20745 T25990 T25989 prep with,transfected
R20746 T25991 T25990 pobj pκBLuc,with
R20747 T25992 T25994 punct (,µg
R20748 T25993 T25994 nummod 0.5,µg
R20749 T25994 T25991 appos µg,pκBLuc
R20750 T25995 T25994 punct ),µg
R20751 T25996 T25991 cc and,pκBLuc
R20752 T25997 T25991 conj pSV-β-Gal,pκBLuc
R20753 T25998 T26000 punct (,µg
R20754 T25999 T26000 nummod 0.1,µg
R20755 T26000 T25997 appos µg,pSV-β-Gal
R20756 T26001 T26000 punct ),µg
R20757 T26002 T25997 prep with,pSV-β-Gal
R20758 T26003 T26002 cc or,with
R20759 T26004 T26002 conj without,with
R20760 T26005 T26004 pobj pRc/CMV-p,without
R20761 T26006 T26005 nummod 65,pRc/CMV-p
R20762 T26007 T26009 punct (,µg
R20763 T26008 T26009 nummod 0.5,µg
R20764 T26009 T26005 appos µg,pRc/CMV-p
R20765 T26010 T26009 punct ),µg
R20766 T26011 T26005 punct ",",pRc/CMV-p
R20767 T26012 T26005 appos pCMV4-HA-IκB-α,pRc/CMV-p
R20768 T26013 T26015 punct (,µg
R20769 T26014 T26015 nummod 0.5,µg
R20770 T26015 T26012 appos µg,pCMV4-HA-IκB-α
R20771 T26016 T26015 punct ),µg
R20772 T26017 T26015 punct ",",µg
R20773 T26018 T26015 conj p3xFLAG-Tat,µg
R20774 T26019 T26018 cc or,p3xFLAG-Tat
R20775 T26020 T26018 conj p3xFLAG-Tat,p3xFLAG-Tat
R20776 T26021 T26004 pobj R,without
R20777 T26022 T26024 punct (,57
R20778 T26023 T26024 nummod 49,57
R20779 T26024 T26021 appos 57,R
R20780 T26025 T26021 punct ),R
R20781 T26026 T26033 det A,µg
R20782 T26027 T26033 punct (,µg
R20783 T26028 T26033 nummod 0.5,µg
R20784 T26029 T26030 punct ",",1
R20785 T26030 T26028 prep 1,0.5
R20786 T26031 T26028 cc and,0.5
R20787 T26032 T26028 conj 2,0.5
R20788 T26033 T26033 ROOT µg,µg
R20789 T26034 T26033 punct ),µg
R20790 T26035 T26033 punct .,µg

GO-CC

Id Subject Object Predicate Lexical cue
T26149 0-21 http://purl.obolibrary.org/obo/GO_0001114 denotes DNA/protein complexes
T26150 0-21 http://purl.obolibrary.org/obo/GO_0032993 denotes DNA/protein complexes
T26151 0-21 http://purl.obolibrary.org/obo/GO_0097522 denotes DNA/protein complexes
T26152 4-21 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T26153 109-114 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T25209 0-295 Sentence denotes DNA/protein complexes were run on 6% PAGE–TBE and analysed by autoradiography. (E) p50−/−p65−/−MEFs (3 × 105 cells) were transfected with pκBLuc (0.5 µg) and pSV-β-Gal (0.1 µg) with or without pRc/CMV-p65 (0.5 µg), pCMV4-HA-IκB-α (0.5 µg), p3xFLAG-Tat or p3xFLAG-Tat R(49–57)A (0.5, 1 and 2 µg).
T155 0-295 Sentence denotes DNA/protein complexes were run on 6% PAGE–TBE and analysed by autoradiography. (E) p50−/−p65−/−MEFs (3 × 105 cells) were transfected with pκBLuc (0.5 µg) and pSV-β-Gal (0.1 µg) with or without pRc/CMV-p65 (0.5 µg), pCMV4-HA-IκB-α (0.5 µg), p3xFLAG-Tat or p3xFLAG-Tat R(49–57)A (0.5, 1 and 2 µg).

events-check-again

Id Subject Object Predicate Lexical cue
T26360 83-86 Protein denotes p50
T26361 89-92 Protein denotes p65
T26362 162-167 Protein denotes β-Gal
T26363 201-204 Protein denotes p65
T26364 221-229 Protein denotes HA-IκB-α
T26365 248-251 Protein denotes Tat
T26366 263-266 Protein denotes Tat

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T26399 215-229 Protein denotes pCMV4-HA-IκB-α
T26400 240-251 Protein denotes p3xFLAG-Tat
T26401 255-262 Protein denotes p3xFLAG
T26402 263-266 Protein denotes Tat

test2

Id Subject Object Predicate Lexical cue
T25159 83-86 Protein denotes p50
T25160 89-92 Protein denotes p65
T25161 162-167 Protein denotes β-Gal
T25162 201-204 Protein denotes p65
T25163 221-229 Protein denotes HA-IκB-α
T25164 248-251 Protein denotes Tat
T25165 263-266 Protein denotes Tat

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T25195 83-86 Protein denotes p50
T25196 89-92 Protein denotes p65
T25197 162-167 Protein denotes β-Gal
T25198 201-204 Protein denotes p65
T25199 221-229 Protein denotes HA-IκB-α
T25200 248-251 Protein denotes Tat
T25201 263-266 Protein denotes Tat

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25650 83-86 P19838 denotes p50
T25651 89-92 Q04206 denotes p65
T25652 89-92 P21579 denotes p65
T25653 201-204 Q04206 denotes p65
T25654 201-204 P21579 denotes p65
T25655 248-251 Q8UMQ1 denotes Tat
T25656 248-251 P04608 denotes Tat
T25657 248-251 P04610 denotes Tat
T25658 248-251 P04605 denotes Tat
T25659 263-266 Q8UMQ1 denotes Tat
T25660 263-266 P04610 denotes Tat
T25661 263-266 P04608 denotes Tat
T25662 263-266 P04605 denotes Tat