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PMC:3333881 / 2399-2681 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-7479976-77584398 36-37 7479976 denotes 6
22187158-9660950-77584399 124-125 9660950 denotes 7
22187158-12628924-77584400 126-127 12628924 denotes 8
22187158-12881425-77584401 146-147 12881425 denotes 9
22187158-10521409-77584402 169-171 10521409 denotes 10
22187158-14963024-77584403 172-174 14963024 denotes 11

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1633 1-3 VB denotes be
T1634 4-12 VB denotes degraded
T1635 13-15 IN denotes by
T1636 16-19 DT denotes the
T1637 20-23 NN denotes 26S
T1638 24-34 NN denotes proteasome
T1639 35-36 -LRB- denotes (
T1640 36-37 CD denotes 6
T1641 37-38 -RRB- denotes )
T1642 40-43 DT denotes The
T1643 44-49 NN denotes NF-κB
T1644 50-58 NN denotes activity
T1645 59-61 VB denotes is
T1646 62-70 VB denotes enhanced
T1647 71-73 IN denotes by
T1648 74-89 NN denotes phosphorylation
T1649 90-92 IN denotes of
T1650 93-96 NN denotes p65
T1651 97-99 IN denotes at
T1652 100-106 NN denotes Ser276
T1653 107-109 IN denotes by
T1654 110-113 NN denotes PKA
T1655 114-117 CC denotes and
T1656 118-122 NN denotes MSK1
T1657 123-124 -LRB- denotes (
T1658 124-127 NN denotes 7,8
T1659 127-128 -RRB- denotes )
T1660 128-129 -COMMA- denotes ,
T1661 130-136 NN denotes Ser311
T1662 137-139 IN denotes by
T1663 140-144 NN denotes PKCζ
T1664 145-146 -LRB- denotes (
T1665 146-147 CD denotes 9
T1666 147-148 -RRB- denotes )
T1667 149-152 CC denotes and
T1668 153-159 NN denotes Ser536
T1669 160-162 IN denotes by
T1670 163-167 NN denotes IKKα
T1671 168-169 -LRB- denotes (
T1672 169-174 CD denotes 10,11
T1673 174-175 -RRB- denotes )
T1674 177-188 NN denotes Acetylation
T1675 189-191 IN denotes of
T1676 192-195 NN denotes p65
T1677 196-198 IN denotes at
T1678 199-205 NN denotes Lys218
T1679 206-209 CC denotes and
T1680 210-216 NN denotes Lys221
T1681 217-226 VB denotes increases
T1682 227-230 DT denotes the
T1683 231-234 NN denotes DNA
T1684 235-242 NN denotes binding
T1685 243-246 CC denotes and
T1686 247-254 VB denotes impairs
T1687 255-258 DT denotes the
T1688 259-270 NN denotes association
T1689 271-275 IN denotes with
T1690 276-281 NN denotes IκB-α
T1691 281-282 -COMMA- denotes ,
R1457 T1634 T1633 arg2Of degraded,be
R1458 T1638 T1634 arg1Of proteasome,degraded
R1459 T1638 T1635 arg2Of proteasome,by
R1460 T1638 T1636 arg1Of proteasome,the
R1461 T1638 T1637 arg1Of proteasome,26S
R1462 T1638 T1639 arg1Of proteasome,(
R1463 T1640 T1639 arg2Of 6,(
R1464 T1641 T1639 arg3Of ),(
R1465 T1644 T1642 arg1Of activity,The
R1466 T1644 T1643 arg1Of activity,NF-κB
R1467 T1644 T1645 arg1Of activity,is
R1468 T1644 T1646 arg2Of activity,enhanced
R1469 T1646 T1645 arg2Of enhanced,is
R1470 T1646 T1647 arg1Of enhanced,by
R1471 T1646 T1651 arg1Of enhanced,at
R1472 T1648 T1647 arg2Of phosphorylation,by
R1473 T1648 T1649 arg1Of phosphorylation,of
R1474 T1650 T1649 arg2Of p65,of
R1475 T1652 T1651 arg2Of Ser276,at
R1476 T1654 T1655 arg1Of PKA,and
R1477 T1655 T1660 arg1Of and,","
R1478 T1656 T1655 arg2Of MSK1,and
R1479 T1656 T1657 arg1Of MSK1,(
R1480 T1658 T1657 arg2Of "7,8",(
R1481 T1659 T1657 arg3Of ),(
R1482 T1660 T1646 arg1Of ",",enhanced
R1483 T1660 T1653 arg2Of ",",by
R1484 T1660 T1662 arg1Of ",",by
R1485 T1661 T1660 arg2Of Ser311,","
R1486 T1663 T1664 arg1Of PKCζ,(
R1487 T1663 T1667 arg1Of PKCζ,and
R1488 T1665 T1664 arg2Of 9,(
R1489 T1666 T1664 arg3Of ),(
R1490 T1667 T1662 arg2Of and,by
R1491 T1667 T1669 arg1Of and,by
R1492 T1668 T1667 arg2Of Ser536,and
R1493 T1670 T1669 arg2Of IKKα,by
R1494 T1670 T1671 arg1Of IKKα,(
R1495 T1672 T1671 arg2Of "10,11",(
R1496 T1673 T1671 arg3Of ),(
R1497 T1674 T1675 arg1Of Acetylation,of
R1498 T1674 T1677 arg1Of Acetylation,at
R1499 T1674 T1681 arg1Of Acetylation,increases
R1500 T1674 T1686 arg1Of Acetylation,impairs
R1501 T1676 T1675 arg2Of p65,of
R1502 T1678 T1679 arg1Of Lys218,and
R1503 T1679 T1677 arg2Of and,at
R1504 T1680 T1679 arg2Of Lys221,and
R1505 T1681 T1685 arg1Of increases,and
R1506 T1684 T1681 arg2Of binding,increases
R1507 T1684 T1682 arg1Of binding,the
R1508 T1684 T1683 arg1Of binding,DNA
R1510 T1686 T1685 arg2Of impairs,and
R1511 T1688 T1686 arg2Of association,impairs
R1512 T1688 T1687 arg1Of association,the
R1513 T1688 T1689 arg1Of association,with
R1514 T1690 T1689 arg2Of IκB-α,with

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2515 1-3 VB denotes be
T2516 4-12 JJ denotes degraded
T2517 13-15 IN denotes by
T2518 16-19 DT denotes the
T2519 20-23 JJ denotes 26S
T2520 24-34 JJ denotes proteasome
T2521 35-36 -LRB- denotes (
T2522 36-37 CD denotes 6
T2523 37-38 -RRB- denotes )
T2524 38-39 . denotes .
T2525 40-43 DT denotes The
T2526 44-49 JJ denotes NF-κB
T2527 50-58 NN denotes activity
T2528 59-61 VBZ denotes is
T2529 62-70 VBN denotes enhanced
T2530 71-73 IN denotes by
T2531 74-89 NN denotes phosphorylation
T2532 90-92 IN denotes of
T2533 93-96 CD denotes p65
T2534 97-99 IN denotes at
T2535 100-106 CD denotes Ser276
T2536 107-109 IN denotes by
T2537 110-113 NNP denotes PKA
T2538 114-117 CC denotes and
T2539 118-122 NNP denotes MSK1
T2540 123-124 -LRB- denotes (
T2541 124-127 CD denotes 7,8
T2542 127-128 -RRB- denotes )
T2543 128-129 , denotes ,
T2544 130-136 NNP denotes Ser311
T2545 137-139 IN denotes by
T2546 140-144 NNP denotes PKCζ
T2547 145-146 -LRB- denotes (
T2548 146-147 CD denotes 9
T2549 147-148 -RRB- denotes )
T2550 149-152 CC denotes and
T2551 153-159 NNP denotes Ser536
T2552 160-162 IN denotes by
T2553 163-167 NNP denotes IKKα
T2554 168-169 -LRB- denotes (
T2555 169-174 CD denotes 10,11
T2556 174-175 -RRB- denotes )
T2557 175-176 . denotes .
T2558 177-188 NNP denotes Acetylation
T2559 189-191 IN denotes of
T2560 192-195 CD denotes p65
T2561 196-198 IN denotes at
T2562 199-205 NNP denotes Lys218
T2563 206-209 CC denotes and
T2564 210-216 NNP denotes Lys221
T2565 217-226 VBZ denotes increases
T2566 227-230 DT denotes the
T2567 231-234 NNP denotes DNA
T2568 235-242 JJ denotes binding
T2569 243-246 CC denotes and
T2570 247-254 VBZ denotes impairs
T2571 255-258 DT denotes the
T2572 259-270 NN denotes association
T2573 271-275 IN denotes with
T2574 276-281 NNP denotes IκB-α
T2575 281-282 , denotes ,
R2186 T2515 T2516 auxpass be,degraded
R2189 T2517 T2516 agent by,degraded
R2190 T2518 T2520 det the,proteasome
R2192 T2519 T2520 amod 26S,proteasome
R2193 T2520 T2517 pobj proteasome,by
R2194 T2521 T2522 punct (,6
R2196 T2522 T2520 appos 6,proteasome
R2198 T2523 T2520 punct ),proteasome
R2200 T2525 T2527 det The,activity
R2201 T2526 T2527 amod NF-κB,activity
R2202 T2527 T2529 nsubjpass activity,enhanced
R2203 T2528 T2529 auxpass is,enhanced
R2204 T2529 T2529 ROOT enhanced,enhanced
R2205 T2530 T2529 agent by,enhanced
R2206 T2531 T2530 pobj phosphorylation,by
R2207 T2532 T2531 prep of,phosphorylation
R2208 T2533 T2532 pobj p65,of
R2210 T2534 T2529 prep at,enhanced
R2211 T2535 T2534 pobj Ser276,at
R2212 T2536 T2529 agent by,enhanced
R2213 T2537 T2536 pobj PKA,by
R2215 T2538 T2537 cc and,PKA
R2216 T2539 T2537 conj MSK1,PKA
R2217 T2540 T2539 punct (,MSK1
R2219 T2541 T2539 parataxis "7,8",MSK1
R2220 T2542 T2539 punct ),MSK1
R2221 T2543 T2537 punct ",",PKA
R2223 T2544 T2537 conj Ser311,PKA
R2224 T2545 T2529 agent by,enhanced
R2225 T2546 T2545 pobj PKCζ,by
R2227 T2547 T2548 punct (,9
R2228 T2548 T2546 parataxis 9,PKCζ
R2229 T2549 T2548 punct ),9
R2231 T2550 T2546 cc and,PKCζ
R2232 T2551 T2546 conj Ser536,PKCζ
R2233 T2552 T2529 agent by,enhanced
R2234 T2553 T2552 pobj IKKα,by
R2236 T2554 T2555 punct (,"10,11"
R2237 T2555 T2553 parataxis "10,11",IKKα
R2238 T2556 T2529 punct ),enhanced
R2240 T2557 T2529 punct .,enhanced
R2241 T2558 T2565 nsubj Acetylation,increases
R2242 T2559 T2558 prep of,Acetylation
R2243 T2560 T2559 pobj p65,of
R2245 T2561 T2558 prep at,Acetylation
R2246 T2562 T2561 pobj Lys218,at
R2248 T2563 T2562 cc and,Lys218
R2249 T2564 T2562 conj Lys221,Lys218
R2250 T2565 T2565 ROOT increases,increases
R2251 T2566 T2567 det the,DNA
R2252 T2567 T2565 dobj DNA,increases
R2253 T2568 T2565 advcl binding,increases
R2255 T2569 T2565 cc and,increases
R2256 T2570 T2565 conj impairs,increases
R2261 T2571 T2572 det the,association
R2262 T2572 T2570 dobj association,impairs
R2263 T2573 T2572 prep with,association
R2264 T2574 T2573 pobj IκB-α,with
R2266 T2575 T2574 punct ",",IκB-α

GO-BP

Id Subject Object Predicate Lexical cue
T3184 74-89 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T3185 110-113 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T3186 140-144 http://purl.obolibrary.org/obo/GO_0004697 denotes PKCζ

GO-MF

Id Subject Object Predicate Lexical cue
T3226 231-242 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T3230 235-242 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T3238 110-113 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T3239 140-144 http://purl.obolibrary.org/obo/GO_0004697 denotes PKCζ

GO-CC

Id Subject Object Predicate Lexical cue
T3210 24-34 http://purl.obolibrary.org/obo/GO_0000502 denotes proteasome
T3211 110-113 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA

sentences

Id Subject Object Predicate Lexical cue
T1435 40-176 Sentence denotes The NF-κB activity is enhanced by phosphorylation of p65 at Ser276 by PKA and MSK1 (7,8), Ser311 by PKCζ (9) and Ser536 by IKKα (10,11).
T17 40-176 Sentence denotes The NF-κB activity is enhanced by phosphorylation of p65 at Ser276 by PKA and MSK1 (7,8), Ser311 by PKCζ (9) and Ser536 by IKKα (10,11).

events-check-again

Id Subject Object Predicate Lexical cue
T4077 4-12 Protein_catabolism denotes degraded
T4078 13-15 Positive_regulation denotes by
T4079 74-89 Phosphorylation denotes phosphorylation
T4080 74-89 Phosphorylation denotes phosphorylation
T4081 74-89 Phosphorylation denotes phosphorylation
T4082 93-96 Protein denotes p65
T4083 100-106 Entity denotes Ser276
T4084 107-109 Positive_regulation denotes by
T4085 118-122 Protein denotes MSK1
T4086 130-136 Entity denotes Ser311
T4087 137-139 Positive_regulation denotes by
T4088 140-144 Protein denotes PKCζ
T4089 153-159 Entity denotes Ser536
T4090 160-162 Positive_regulation denotes by
T4091 163-167 Protein denotes IKKα
T4092 177-188 Acetylation denotes Acetylation
T4093 177-188 Acetylation denotes Acetylation
T4094 192-195 Protein denotes p65
T4095 199-205 Entity denotes Lys218
T4096 210-216 Entity denotes Lys221
T4097 217-226 Positive_regulation denotes increases
T4098 217-226 Positive_regulation denotes increases
T4099 235-242 Binding denotes binding
T4100 247-254 Negative_regulation denotes impairs
T4101 247-254 Negative_regulation denotes impairs
T4102 259-270 Binding denotes association
T4103 276-281 Protein denotes IκB-α
R3803 T4077 T4078 themeOf degraded,by
R3806 T4079 T4084 themeOf phosphorylation,by
R3809 T4079 T4087 themeOf phosphorylation,by
R3810 T4079 T4090 themeOf phosphorylation,by
R3814 T4083 T4079 themeOf Ser276,phosphorylation
R3819 T4083 T4082 partOf Ser276,p65
R3822 T4085 T4084 causeOf MSK1,by
R3826 T4086 T4081 themeOf Ser311,phosphorylation
R3829 T4086 T4082 partOf Ser311,p65
R3831 T4088 T4087 causeOf PKCζ,by
R3833 T4089 T4080 themeOf Ser536,phosphorylation
R3840 T4089 T4082 partOf Ser536,p65
R3841 T4091 T4090 causeOf IKKα,by
R3844 T4092 T4098 causeOf Acetylation,increases
R3846 T4092 T4100 causeOf Acetylation,impairs
R3847 T4093 T4097 causeOf Acetylation,increases
R3848 T4093 T4101 causeOf Acetylation,impairs
R3849 T4094 T4099 themeOf p65,binding
R3852 T4094 T4102 themeOf p65,association
R3853 T4095 T4092 themeOf Lys218,Acetylation
R3857 T4095 T4094 partOf Lys218,p65
R3859 T4096 T4093 themeOf Lys221,Acetylation
R3862 T4096 T4094 partOf Lys221,p65
R3864 T4099 T4098 themeOf binding,increases
R3881 T4099 T4097 themeOf binding,increases
R3882 T4102 T4100 themeOf association,impairs
R3884 T4102 T4101 themeOf association,impairs
R3885 T4103 T4102 themeOf IκB-α,association

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4228 4-12 Protein_catabolism denotes degraded
T4231 44-49 Protein denotes NF-κB
T4232 93-96 Protein denotes p65
T4233 110-113 Protein denotes PKA
T4234 118-122 Protein denotes MSK1
T4235 62-70 Positive_regulation denotes enhanced
T4236 62-70 Positive_regulation denotes enhanced
T4237 74-89 Phosphorylation denotes phosphorylation
T4238 62-70 Positive_regulation denotes enhanced
T4239 192-195 Protein denotes p65
T4240 199-205 Protein denotes Lys218
T4241 210-216 Protein denotes Lys221
T4242 276-281 Protein denotes IκB-α
T4244 177-188 Negative_regulation denotes Acetylation
T4245 177-188 Negative_regulation denotes Acetylation
T4246 177-188 Negative_regulation denotes Acetylation
T4247 259-270 Binding denotes association
R3823 T4231 T4235 themeOf NF-κB,enhanced
R3824 T4231 T4236 themeOf NF-κB,enhanced
R3825 T4231 T4238 themeOf NF-κB,enhanced
R3827 T4232 T4237 themeOf p65,phosphorylation
R3828 T4233 T4235 causeOf PKA,enhanced
R3830 T4234 T4236 causeOf MSK1,enhanced
R3832 T4237 T4238 causeOf phosphorylation,enhanced
R3834 T4239 T4244 themeOf p65,Acetylation
R3835 T4239 T4247 themeOf p65,association
R3836 T4240 T4245 themeOf Lys218,Acetylation
R3837 T4241 T4246 themeOf Lys221,Acetylation
R3838 T4242 T4247 themeOf IκB-α,association

test2

Id Subject Object Predicate Lexical cue
T1157 4-12 Protein_catabolism denotes degraded
T1158 62-70 Positive_regulation denotes enhanced
T1159 74-89 Phosphorylation denotes phosphorylation
T1160 93-96 Protein denotes p65
T1161 100-106 Entity denotes Ser276
T1162 118-122 Protein denotes MSK1
T1163 140-144 Protein denotes PKCζ
T1164 153-159 Entity denotes Ser536
T1165 163-167 Protein denotes IKKα
T1166 177-188 Phosphorylation denotes Acetylation
T1167 192-195 Protein denotes p65
T1168 199-205 Entity denotes Lys218
T1169 217-226 Positive_regulation denotes increases
T1170 235-242 Binding denotes binding
T1171 247-254 Negative_regulation denotes impairs
T1172 259-270 Binding denotes association
T1173 276-281 Protein denotes IκB-α
R997 T1161 T1159 themeOf Ser276,phosphorylation
R998 T1161 T1160 partOf Ser276,p65
R999 T1164 T1160 partOf Ser536,p65
R1000 T1164 T1163 partOf Ser536,PKCζ
R1002 T1167 T1166 themeOf p65,Acetylation
R1003 T1167 T1170 themeOf p65,binding
R1004 T1168 T1167 partOf Lys218,p65
R1005 T1168 T1166 themeOf Lys218,Acetylation
R1006 T1172 T1171 themeOf association,impairs
R1007 T1173 T1172 themeOf IκB-α,association

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1322 4-12 Protein_catabolism denotes degraded
T1323 13-15 Positive_regulation denotes by
T1324 74-89 Phosphorylation denotes phosphorylation
T1325 74-89 Phosphorylation denotes phosphorylation
T1326 74-89 Phosphorylation denotes phosphorylation
T1327 93-96 Protein denotes p65
T1328 100-106 Entity denotes Ser276
T1329 107-109 Positive_regulation denotes by
T1330 118-122 Protein denotes MSK1
T1331 130-136 Entity denotes Ser311
T1332 137-139 Positive_regulation denotes by
T1333 140-144 Protein denotes PKCζ
T1334 153-159 Entity denotes Ser536
T1335 160-162 Positive_regulation denotes by
T1336 163-167 Protein denotes IKKα
T1337 177-188 Acetylation denotes Acetylation
T1338 177-188 Acetylation denotes Acetylation
T1339 192-195 Protein denotes p65
T1340 199-205 Entity denotes Lys218
T1341 210-216 Entity denotes Lys221
T1342 217-226 Positive_regulation denotes increases
T1343 217-226 Positive_regulation denotes increases
T1344 235-242 Binding denotes binding
T1345 247-254 Negative_regulation denotes impairs
T1346 247-254 Negative_regulation denotes impairs
T1347 259-270 Binding denotes association
T1348 276-281 Protein denotes IκB-α
R1187 T1322 T1323 themeOf degraded,by
R1188 T1324 T1329 themeOf phosphorylation,by
R1189 T1324 T1332 themeOf phosphorylation,by
R1190 T1324 T1335 themeOf phosphorylation,by
R1191 T1328 T1324 themeOf Ser276,phosphorylation
R1192 T1328 T1327 partOf Ser276,p65
R1193 T1330 T1329 causeOf MSK1,by
R1194 T1331 T1326 themeOf Ser311,phosphorylation
R1195 T1331 T1327 partOf Ser311,p65
R1196 T1333 T1332 causeOf PKCζ,by
R1197 T1334 T1325 themeOf Ser536,phosphorylation
R1198 T1334 T1327 partOf Ser536,p65
R1199 T1336 T1335 causeOf IKKα,by
R1200 T1337 T1343 causeOf Acetylation,increases
R1201 T1337 T1345 causeOf Acetylation,impairs
R1202 T1338 T1342 causeOf Acetylation,increases
R1203 T1338 T1346 causeOf Acetylation,impairs
R1204 T1339 T1344 themeOf p65,binding
R1205 T1339 T1347 themeOf p65,association
R1206 T1340 T1337 themeOf Lys218,Acetylation
R1207 T1340 T1339 partOf Lys218,p65
R1208 T1341 T1338 themeOf Lys221,Acetylation
R1209 T1341 T1339 partOf Lys221,p65
R1210 T1344 T1343 themeOf binding,increases
R1211 T1344 T1342 themeOf binding,increases
R1212 T1347 T1345 themeOf association,impairs
R1213 T1347 T1346 themeOf association,impairs
R1214 T1348 T1347 themeOf IκB-α,association

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2261 93-96 P21579 denotes p65
T2262 93-96 Q04206 denotes p65
T2263 118-122 O75582 denotes MSK1
T2264 192-195 P21579 denotes p65
T2265 192-195 Q04206 denotes p65