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PMC:3333881 / 23711-24080 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25285 0-9 JJ denotes Wild-type
T25286 10-13 CC denotes and
T25287 14-20 JJ denotes mutant
T25288 21-24 NN denotes Tat
T25289 25-33 NN denotes proteins
T25290 34-38 VB denotes were
T25291 39-57 VB denotes immunoprecipitated
T25292 58-62 IN denotes with
T25293 63-72 JJ denotes anti-FLAG
T25294 73-81 NN denotes antibody
T25295 81-82 -COLON- denotes ;
T25296 83-98 NN denotes immunocomplexes
T25297 99-103 VB denotes were
T25298 104-113 VB denotes separated
T25299 114-116 IN denotes by
T25300 117-119 CD denotes 12
T25301 119-120 NN denotes %
T25302 121-129 NN denotes SDS–PAGE
T25303 130-133 CC denotes and
T25304 134-142 VB denotes analysed
T25305 143-145 IN denotes by
T25306 146-153 JJ denotes western
T25307 154-162 NN denotes blotting
T25308 163-167 IN denotes with
T25309 168-175 JJ denotes anti-HA
T25310 176-179 CC denotes and
T25311 180-189 JJ denotes anti-FLAG
T25312 190-201 NN denotes antibodies.
T25313 202-203 -LRB- denotes (
T25314 203-204 NN denotes C
T25315 204-205 -RRB- denotes )
T25316 206-228 JJ denotes 35S-methionine-labeled
T25317 229-232 NN denotes p65
T25318 233-234 -LRB- denotes (
T25319 234-238 NN denotes 5 µl
T25320 238-239 -RRB- denotes )
T25321 240-243 VB denotes was
T25322 244-253 VB denotes incubated
T25323 254-258 IN denotes with
T25324 259-261 FW denotes in
T25325 262-267 FW denotes vitro
T25326 268-278 VB denotes translated
T25327 279-287 NN denotes HA-IκB-α
T25328 288-289 -LRB- denotes (
T25329 289-293 NN denotes 5 µl
T25330 293-294 -RRB- denotes )
T25331 295-297 IN denotes in
T25332 298-306 NN denotes presence
T25333 307-309 CC denotes or
T25334 310-317 NN denotes absence
T25335 318-320 IN denotes of
T25336 321-329 NN denotes FLAG-Tat
T25337 330-332 CC denotes or
T25338 333-341 NN denotes FLAG-Tat
T25339 342-343 NN denotes R
T25340 343-344 -LRB- denotes (
T25341 344-349 CD denotes 49–57
T25342 349-350 -RRB- denotes )
T25343 350-351 NN denotes A
T25344 352-353 -LRB- denotes (
T25345 353-354 CD denotes 5
T25346 354-355 -COMMA- denotes ,
T25347 356-358 CD denotes 10
T25348 359-361 CC denotes or
T25349 362-367 NN denotes 20 µl
T25350 367-368 -RRB- denotes )
R20106 T25285 T25286 arg1Of Wild-type,and
R20107 T25287 T25286 arg2Of mutant,and
R20108 T25289 T25285 arg1Of proteins,Wild-type
R20109 T25289 T25287 arg1Of proteins,mutant
R20110 T25289 T25288 arg1Of proteins,Tat
R20111 T25289 T25290 arg1Of proteins,were
R20112 T25289 T25291 arg2Of proteins,immunoprecipitated
R20113 T25291 T25290 arg2Of immunoprecipitated,were
R20114 T25291 T25292 arg1Of immunoprecipitated,with
R20115 T25291 T25295 arg1Of immunoprecipitated,;
R20116 T25294 T25292 arg2Of antibody,with
R20117 T25294 T25293 arg1Of antibody,anti-FLAG
R20118 T25296 T25297 arg1Of immunocomplexes,were
R20119 T25296 T25298 arg2Of immunocomplexes,separated
R20120 T25296 T25304 arg2Of immunocomplexes,analysed
R20121 T25298 T25303 arg1Of separated,and
R20122 T25300 T25301 arg1Of 12,%
R20123 T25302 T25298 arg1Of SDS–PAGE,separated
R20124 T25302 T25299 arg2Of SDS–PAGE,by
R20125 T25302 T25300 arg1Of SDS–PAGE,12
R20126 T25303 T25295 arg2Of and,;
R20127 T25303 T25297 arg2Of and,were
R20128 T25303 T25308 arg1Of and,with
R20129 T25304 T25303 arg2Of analysed,and
R20130 T25307 T25304 arg1Of blotting,analysed
R20131 T25307 T25305 arg2Of blotting,by
R20132 T25307 T25306 arg1Of blotting,western
R20133 T25309 T25310 arg1Of anti-HA,and
R20134 T25311 T25310 arg2Of anti-FLAG,and
R20135 T25312 T25308 arg2Of antibodies.,with
R20136 T25312 T25309 arg1Of antibodies.,anti-HA
R20137 T25312 T25311 arg1Of antibodies.,anti-FLAG
R20138 T25312 T25313 arg1Of antibodies.,(
R20139 T25312 T25321 modOf antibodies.,was
R20140 T25314 T25313 arg2Of C,(
R20141 T25315 T25313 arg3Of ),(
R20142 T25317 T25316 arg1Of p65,35S-methionine-labeled
R20143 T25317 T25318 arg1Of p65,(
R20144 T25317 T25321 arg1Of p65,was
R20145 T25317 T25322 arg2Of p65,incubated
R20146 T25319 T25318 arg2Of 5 µl,(
R20147 T25320 T25318 arg3Of ),(
R20148 T25322 T25321 arg2Of incubated,was
R20149 T25322 T25323 arg1Of incubated,with
R20150 T25325 T25324 arg1Of vitro,in
R20151 T25327 T25323 arg2Of HA-IκB-α,with
R20152 T25327 T25325 arg1Of HA-IκB-α,vitro
R20153 T25327 T25326 arg2Of HA-IκB-α,translated
R20154 T25327 T25328 arg1Of HA-IκB-α,(
R20155 T25327 T25331 arg1Of HA-IκB-α,in
R20156 T25327 T25335 arg1Of HA-IκB-α,of
R20157 T25329 T25328 arg2Of 5 µl,(
R20158 T25330 T25328 arg3Of ),(
R20159 T25332 T25333 arg1Of presence,or
R20160 T25333 T25331 arg2Of or,in
R20161 T25334 T25333 arg2Of absence,or
R20162 T25336 T25337 arg1Of FLAG-Tat,or
R20163 T25339 T25337 arg2Of R,or
R20164 T25339 T25338 arg1Of R,FLAG-Tat
R20165 T25339 T25340 arg1Of R,(
R20166 T25341 T25340 arg2Of 49–57,(
R20167 T25342 T25340 arg3Of ),(
R20168 T25343 T25335 arg2Of A,of
R20169 T25343 T25336 arg1Of A,FLAG-Tat
R20170 T25343 T25339 arg1Of A,R
R20171 T25343 T25344 arg1Of A,(
R20172 T25345 T25346 arg1Of 5,","
R20173 T25346 T25348 arg1Of ",",or
R20174 T25347 T25346 arg2Of 10,","
R20175 T25348 T25344 arg2Of or,(
R20176 T25349 T25348 arg2Of 20 µl,or
R20177 T25350 T25344 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25717 81-82 : denotes ;
T25755 0-9 JJ denotes Wild-type
T25756 10-13 CC denotes and
T25757 14-20 JJ denotes mutant
T25758 21-24 NNP denotes Tat
T25759 25-33 NNS denotes proteins
T25760 34-38 VBD denotes were
T25761 39-57 VBN denotes immunoprecipitated
T25762 58-62 IN denotes with
T25763 63-72 JJ denotes anti-FLAG
T25764 73-81 NN denotes antibody
T25765 83-98 NNS denotes immunocomplexes
T25766 99-103 VBD denotes were
T25767 104-113 VBN denotes separated
T25768 114-116 IN denotes by
T25769 117-119 CD denotes 12
T25770 119-120 NN denotes %
T25771 121-124 NNP denotes SDS
T25772 125-129 NNP denotes PAGE
T25773 130-133 CC denotes and
T25774 134-142 VBN denotes analysed
T25775 143-145 IN denotes by
T25776 146-153 JJ denotes western
T25777 154-162 VBG denotes blotting
T25778 163-167 IN denotes with
T25779 168-175 JJ denotes anti-HA
T25780 176-179 CC denotes and
T25781 180-189 JJ denotes anti-FLAG
T25782 190-200 NNS denotes antibodies
T25783 200-201 . denotes .
T25784 202-203 -LRB- denotes (
T25785 203-204 $ denotes C
T25786 204-205 -RRB- denotes )
T25787 206-228 JJ denotes 35S-methionine-labeled
T25788 229-232 NNS denotes p65
T25789 233-234 -LRB- denotes (
T25790 234-235 CD denotes 5
T25791 236-238 NN denotes µl
T25792 238-239 -RRB- denotes )
T25793 240-243 VBD denotes was
T25794 244-253 VBN denotes incubated
T25795 254-258 IN denotes with
T25796 259-261 IN denotes in
T25797 262-267 NN denotes vitro
T25798 268-278 VBN denotes translated
T25799 279-287 NNP denotes HA-IκB-α
T25800 288-289 -LRB- denotes (
T25801 289-290 CD denotes 5
T25802 291-293 NN denotes µl
T25803 293-294 -RRB- denotes )
T25804 295-297 IN denotes in
T25805 298-306 NN denotes presence
T25806 307-309 CC denotes or
T25807 310-317 NN denotes absence
T25808 318-320 IN denotes of
T25809 321-329 NN denotes FLAG-Tat
T25810 330-332 CC denotes or
T25811 333-341 NN denotes FLAG-Tat
T25812 342-343 NN denotes R
T25813 343-344 -LRB- denotes (
T25814 344-346 CD denotes 49
T25815 347-349 CD denotes 57
T25816 349-350 -RRB- denotes )
T25817 350-351 DT denotes A
T25818 352-353 -LRB- denotes (
T25819 353-354 CD denotes 5
T25820 354-355 , denotes ,
T25821 356-358 CD denotes 10
T25822 359-361 CC denotes or
T25823 362-364 CD denotes 20
T25824 365-367 NN denotes µl
T25825 367-368 -RRB- denotes )
T25826 368-369 . denotes .
R20472 T25717 T25767 punct ;,separated
R20510 T25755 T25759 amod Wild-type,proteins
R20511 T25756 T25755 cc and,Wild-type
R20512 T25757 T25755 conj mutant,Wild-type
R20513 T25758 T25759 compound Tat,proteins
R20514 T25759 T25761 nsubjpass proteins,immunoprecipitated
R20515 T25760 T25761 auxpass were,immunoprecipitated
R20516 T25761 T25767 ccomp immunoprecipitated,separated
R20517 T25762 T25761 prep with,immunoprecipitated
R20518 T25763 T25764 amod anti-FLAG,antibody
R20519 T25764 T25762 pobj antibody,with
R20520 T25765 T25767 nsubjpass immunocomplexes,separated
R20521 T25766 T25767 auxpass were,separated
R20522 T25767 T25767 ROOT separated,separated
R20523 T25768 T25767 prep by,separated
R20524 T25769 T25770 nummod 12,%
R20525 T25770 T25768 pobj %,by
R20526 T25771 T25772 compound SDS,PAGE
R20527 T25772 T25767 dobj PAGE,separated
R20528 T25773 T25772 cc and,PAGE
R20529 T25774 T25772 conj analysed,PAGE
R20530 T25775 T25774 agent by,analysed
R20531 T25776 T25777 amod western,blotting
R20532 T25777 T25775 pobj blotting,by
R20533 T25778 T25777 prep with,blotting
R20534 T25779 T25782 amod anti-HA,antibodies
R20535 T25780 T25779 cc and,anti-HA
R20536 T25781 T25779 conj anti-FLAG,anti-HA
R20537 T25782 T25778 pobj antibodies,with
R20538 T25783 T25767 punct .,separated
R20539 T25784 T25785 punct (,C
R20540 T25785 T25788 nmod C,p65
R20541 T25786 T25785 punct ),C
R20542 T25787 T25788 amod 35S-methionine-labeled,p65
R20543 T25788 T25794 nsubjpass p65,incubated
R20544 T25789 T25788 punct (,p65
R20545 T25790 T25791 nummod 5,µl
R20546 T25791 T25788 appos µl,p65
R20547 T25792 T25791 punct ),µl
R20548 T25793 T25794 auxpass was,incubated
R20549 T25794 T25794 ROOT incubated,incubated
R20550 T25795 T25794 prep with,incubated
R20551 T25796 T25798 prep in,translated
R20552 T25797 T25798 nsubj vitro,translated
R20553 T25798 T25794 conj translated,incubated
R20554 T25799 T25798 dobj HA-IκB-α,translated
R20555 T25800 T25802 punct (,µl
R20556 T25801 T25802 nummod 5,µl
R20557 T25802 T25799 appos µl,HA-IκB-α
R20558 T25803 T25802 punct ),µl
R20559 T25804 T25798 prep in,translated
R20560 T25805 T25804 pobj presence,in
R20561 T25806 T25805 cc or,presence
R20562 T25807 T25805 conj absence,presence
R20563 T25808 T25807 prep of,absence
R20564 T25809 T25808 pobj FLAG-Tat,of
R20565 T25810 T25809 cc or,FLAG-Tat
R20566 T25811 T25812 compound FLAG-Tat,R
R20567 T25812 T25809 conj R,FLAG-Tat
R20568 T25813 T25809 punct (,FLAG-Tat
R20569 T25814 T25809 appos 49,FLAG-Tat
R20570 T25815 T25809 appos 57,FLAG-Tat
R20571 T25816 T25809 punct ),FLAG-Tat
R20572 T25817 T25824 det A,µl
R20573 T25818 T25824 punct (,µl
R20574 T25819 T25824 nummod 5,µl
R20575 T25820 T25824 punct ",",µl
R20576 T25821 T25824 nummod 10,µl
R20577 T25822 T25821 cc or,10
R20578 T25823 T25821 conj 20,10
R20579 T25824 T25824 ROOT µl,µl
R20580 T25825 T25824 punct ),µl
R20581 T25826 T25824 punct .,µl

GO-BP

Id Subject Object Predicate Lexical cue
T26108 268-278 http://purl.obolibrary.org/obo/GO_0006412 denotes translated

GO-MF

Id Subject Object Predicate Lexical cue
T26123 73-81 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T26141 73-81 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T26145 73-81 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T25205 0-369 Sentence denotes Wild-type and mutant Tat proteins were immunoprecipitated with anti-FLAG antibody; immunocomplexes were separated by 12% SDS–PAGE and analysed by western blotting with anti-HA and anti-FLAG antibodies. (C) 35S-methionine-labeled p65 (5 µl) was incubated with in vitro translated HA-IκB-α (5 µl) in presence or absence of FLAG-Tat or FLAG-Tat R(49–57)A (5, 10 or 20 µl).
T151 0-369 Sentence denotes Wild-type and mutant Tat proteins were immunoprecipitated with anti-FLAG antibody; immunocomplexes were separated by 12% SDS–PAGE and analysed by western blotting with anti-HA and anti-FLAG antibodies. (C) 35S-methionine-labeled p65 (5 µl) was incubated with in vitro translated HA-IκB-α (5 µl) in presence or absence of FLAG-Tat or FLAG-Tat R(49–57)A (5, 10 or 20 µl).

events-check-again

Id Subject Object Predicate Lexical cue
T26345 21-24 Protein denotes Tat
T26346 229-232 Protein denotes p65
T26347 279-287 Protein denotes HA-IκB-α
T26348 321-329 Protein denotes FLAG-Tat
T26349 333-351 Protein denotes FLAG-Tat R(49–57)A

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T26379 14-33 Protein denotes mutant Tat proteins
T26380 229-232 Protein denotes p65
T26381 279-281 Protein denotes HA
T26382 282-287 Protein denotes IκB-α
T26383 321-325 Protein denotes FLAG
T26384 326-329 Protein denotes Tat
T26385 333-337 Protein denotes FLAG
T26386 338-341 Protein denotes Tat

test2

Id Subject Object Predicate Lexical cue
T25143 21-24 Protein denotes Tat
T25144 229-232 Protein denotes p65
T25145 279-287 Protein denotes HA-IκB-α
T25146 310-317 Negative_regulation denotes absence
T25147 321-329 Protein denotes FLAG-Tat
T25148 333-351 Protein denotes FLAG-Tat R(49–57)A
R20019 T25147 T25146 themeOf FLAG-Tat,absence

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T25180 21-24 Protein denotes Tat
T25181 229-232 Protein denotes p65
T25182 279-287 Protein denotes HA-IκB-α
T25183 321-329 Protein denotes FLAG-Tat
T25184 333-351 Protein denotes FLAG-Tat R(49–57)A

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25622 21-24 Q8UMQ1 denotes Tat
T25623 21-24 P04608 denotes Tat
T25624 21-24 P04610 denotes Tat
T25625 21-24 P04605 denotes Tat
T25626 229-232 P21579 denotes p65
T25627 229-232 Q04206 denotes p65
T25628 326-329 Q8UMQ1 denotes Tat
T25629 326-329 P04605 denotes Tat
T25630 326-329 P04608 denotes Tat
T25631 326-329 P04610 denotes Tat
T25632 338-341 P04610 denotes Tat
T25633 338-341 P04608 denotes Tat
T25634 338-341 P04605 denotes Tat
T25635 338-341 Q8UMQ1 denotes Tat