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PMC:3333881 / 23400-23710 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25214 0-3 NN denotes Tat
T25215 4-12 VB denotes relieves
T25216 13-16 NN denotes p65
T25217 17-21 IN denotes from
T25218 22-25 DT denotes the
T25219 26-31 JJ denotes IκB-α
T25220 32-43 NN denotes inhibition.
T25221 44-45 -LRB- denotes (
T25222 45-46 NN denotes A
T25223 46-47 -RRB- denotes )
T25224 48-57 JJ denotes Schematic
T25225 58-72 NN denotes representation
T25226 73-75 IN denotes of
T25227 76-85 JJ denotes wild-type
T25228 86-89 CC denotes and
T25229 90-96 JJ denotes mutant
T25230 97-100 NN denotes Tat
T25231 101-110 NN denotes proteins.
T25232 111-112 -LRB- denotes (
T25233 112-113 NN denotes B
T25234 113-114 -RRB- denotes )
T25235 115-123 NN denotes HA-IκB-α
T25236 124-125 -LRB- denotes (
T25237 125-129 NN denotes 5 µl
T25238 129-130 -RRB- denotes )
T25239 131-134 VB denotes was
T25240 135-144 VB denotes incubated
T25241 145-147 IN denotes in
T25242 148-156 NN denotes presence
T25243 157-159 CC denotes or
T25244 160-167 NN denotes absence
T25245 168-170 IN denotes of
T25246 171-179 NN denotes FLAG-Tat
T25247 179-180 -COMMA- denotes ,
T25248 181-189 NN denotes FLAG-Tat
T25249 190-191 NNP denotes T
T25250 191-192 -COMMA- denotes ,
T25251 192-193 NN denotes N
T25252 193-194 -LRB- denotes (
T25253 194-199 CD denotes 23,24
T25254 199-200 -RRB- denotes )
T25255 200-201 NN denotes A
T25256 201-202 -COMMA- denotes ,
T25257 203-211 NN denotes FLAG-Tat
T25258 212-213 NN denotes K
T25259 213-214 -LRB- denotes (
T25260 214-219 CD denotes 50,51
T25261 219-220 -RRB- denotes )
T25262 220-221 NN denotes A
T25263 221-222 -COMMA- denotes ,
T25264 223-231 NN denotes FLAG-Tat
T25265 232-233 NN denotes R
T25266 233-234 -LRB- denotes (
T25267 234-239 CD denotes 49–57
T25268 239-240 -RRB- denotes )
T25269 240-241 NN denotes A
T25270 242-244 CC denotes or
T25271 245-253 NN denotes FLAG-Tat
T25272 254-255 NN denotes C
T25273 255-256 -LRB- denotes (
T25274 256-264 CD denotes 22,25,27
T25275 264-265 -RRB- denotes )
T25276 265-266 NN denotes A
T25277 267-268 -LRB- denotes (
T25278 268-273 NN denotes 10 µl
T25279 273-274 -RRB- denotes )
T25280 275-280 VB denotes using
T25281 281-283 FW denotes in
T25282 284-289 FW denotes vitro
T25283 290-300 VB denotes translated
T25284 301-309 NN denotes proteins
R20033 T25214 T25215 arg1Of Tat,relieves
R20034 T25214 T25280 arg1Of Tat,using
R20035 T25215 T25280 modOf relieves,using
R20036 T25216 T25217 arg1Of p65,from
R20037 T25216 T25226 arg1Of p65,of
R20038 T25216 T25263 arg1Of p65,","
R20039 T25222 T25221 arg2Of A,(
R20040 T25223 T25221 arg3Of ),(
R20041 T25225 T25217 arg2Of representation,from
R20042 T25225 T25218 arg1Of representation,the
R20043 T25225 T25219 arg1Of representation,IκB-α
R20044 T25225 T25220 arg1Of representation,inhibition.
R20045 T25225 T25221 arg1Of representation,(
R20046 T25225 T25224 arg1Of representation,Schematic
R20047 T25227 T25228 arg1Of wild-type,and
R20048 T25229 T25228 arg2Of mutant,and
R20049 T25231 T25227 arg1Of proteins.,wild-type
R20050 T25231 T25229 arg1Of proteins.,mutant
R20051 T25231 T25230 arg1Of proteins.,Tat
R20052 T25231 T25232 arg1Of proteins.,(
R20053 T25231 T25239 modOf proteins.,was
R20054 T25231 T25243 arg1Of proteins.,or
R20055 T25233 T25232 arg2Of B,(
R20056 T25234 T25232 arg3Of ),(
R20057 T25235 T25236 arg1Of HA-IκB-α,(
R20058 T25235 T25239 arg1Of HA-IκB-α,was
R20059 T25235 T25240 arg2Of HA-IκB-α,incubated
R20060 T25237 T25236 arg2Of 5 µl,(
R20061 T25238 T25236 arg3Of ),(
R20062 T25240 T25239 arg2Of incubated,was
R20063 T25240 T25241 arg1Of incubated,in
R20064 T25242 T25241 arg2Of presence,in
R20065 T25243 T25226 arg2Of or,of
R20066 T25244 T25245 arg1Of absence,of
R20067 T25244 T25256 arg1Of absence,","
R20068 T25246 T25245 arg2Of FLAG-Tat,of
R20069 T25246 T25247 arg1Of FLAG-Tat,","
R20070 T25246 T25250 arg1Of FLAG-Tat,","
R20071 T25249 T25247 arg2Of T,","
R20072 T25249 T25248 arg1Of T,FLAG-Tat
R20073 T25253 T25252 arg2Of "23,24",(
R20074 T25254 T25252 arg3Of ),(
R20075 T25255 T25250 arg2Of A,","
R20076 T25255 T25251 arg1Of A,N
R20077 T25255 T25252 arg1Of A,(
R20078 T25256 T25243 arg2Of ",",or
R20079 T25260 T25259 arg2Of "50,51",(
R20080 T25261 T25259 arg3Of ),(
R20081 T25262 T25256 arg2Of A,","
R20082 T25262 T25257 arg1Of A,FLAG-Tat
R20083 T25262 T25258 arg1Of A,K
R20084 T25262 T25259 arg1Of A,(
R20085 T25263 T25270 arg1Of ",",or
R20086 T25265 T25264 arg1Of R,FLAG-Tat
R20087 T25265 T25266 arg1Of R,(
R20088 T25267 T25266 arg2Of 49–57,(
R20089 T25268 T25266 arg3Of ),(
R20090 T25269 T25263 arg2Of A,","
R20091 T25269 T25265 arg1Of A,R
R20092 T25270 T25215 arg2Of or,relieves
R20093 T25274 T25273 arg2Of "22,25,27",(
R20094 T25275 T25273 arg3Of ),(
R20095 T25276 T25270 arg2Of A,or
R20096 T25276 T25271 arg1Of A,FLAG-Tat
R20097 T25276 T25272 arg1Of A,C
R20098 T25276 T25273 arg1Of A,(
R20099 T25276 T25277 arg1Of A,(
R20100 T25278 T25277 arg2Of 10 µl,(
R20101 T25279 T25277 arg3Of ),(
R20102 T25284 T25280 arg2Of proteins,using
R20103 T25284 T25281 arg1Of proteins,in
R20104 T25284 T25282 arg1Of proteins,vitro
R20105 T25284 T25283 arg2Of proteins,translated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25677 0-3 NNP denotes Tat
T25678 4-12 VBZ denotes relieves
T25679 13-16 CD denotes p65
T25680 17-21 IN denotes from
T25681 22-25 DT denotes the
T25682 26-31 JJ denotes IκB-α
T25683 32-42 NN denotes inhibition
T25684 42-43 . denotes .
T25685 44-45 -LRB- denotes (
T25686 45-46 NN denotes A
T25687 46-47 -RRB- denotes )
T25688 48-57 JJ denotes Schematic
T25689 58-72 NN denotes representation
T25690 73-75 IN denotes of
T25691 76-85 JJ denotes wild-type
T25692 86-89 CC denotes and
T25693 90-96 JJ denotes mutant
T25694 97-100 NNP denotes Tat
T25695 101-109 NNS denotes proteins
T25696 109-110 . denotes .
T25697 111-112 -LRB- denotes (
T25698 112-113 NNP denotes B
T25699 113-114 -RRB- denotes )
T25700 115-123 NNP denotes HA-IκB-α
T25701 124-125 -LRB- denotes (
T25702 125-126 CD denotes 5
T25703 127-129 NN denotes µl
T25704 129-130 -RRB- denotes )
T25705 131-134 VBD denotes was
T25706 135-144 VBN denotes incubated
T25707 145-147 IN denotes in
T25708 148-156 NN denotes presence
T25709 157-159 CC denotes or
T25710 160-167 NN denotes absence
T25711 168-170 IN denotes of
T25712 171-179 NNP denotes FLAG-Tat
T25713 179-180 , denotes ,
T25714 181-189 NNP denotes FLAG-Tat
T25715 190-191 NNP denotes T
T25716 191-192 , denotes ,
T25718 192-193 NNP denotes N
T25719 193-194 -LRB- denotes (
T25720 194-199 CD denotes 23,24
T25721 199-200 -RRB- denotes )
T25722 200-201 DT denotes A
T25723 201-202 , denotes ,
T25724 203-211 JJ denotes FLAG-Tat
T25725 212-213 NNP denotes K
T25726 213-214 -LRB- denotes (
T25727 214-219 CD denotes 50,51
T25728 219-220 -RRB- denotes )
T25729 220-221 DT denotes A
T25730 221-222 , denotes ,
T25731 223-231 JJ denotes FLAG-Tat
T25732 232-233 NN denotes R
T25733 233-234 -LRB- denotes (
T25734 234-236 CD denotes 49
T25735 237-239 CD denotes 57
T25736 239-240 -RRB- denotes )
T25737 240-241 DT denotes A
T25738 242-244 CC denotes or
T25739 245-253 JJ denotes FLAG-Tat
T25740 254-255 NNP denotes C
T25741 255-256 -LRB- denotes (
T25742 256-264 CD denotes 22,25,27
T25743 264-265 -RRB- denotes )
T25744 265-266 DT denotes A
T25745 267-268 -LRB- denotes (
T25746 268-270 CD denotes 10
T25747 271-273 NN denotes µl
T25748 273-274 -RRB- denotes )
T25749 275-280 VBG denotes using
T25750 281-283 IN denotes in
T25751 284-289 NN denotes vitro
T25752 290-300 VBN denotes translated
T25753 301-309 NNS denotes proteins
T25754 309-310 . denotes .
R20432 T25677 T25678 nsubj Tat,relieves
R20433 T25678 T25678 ROOT relieves,relieves
R20434 T25679 T25678 dobj p65,relieves
R20435 T25680 T25678 prep from,relieves
R20436 T25681 T25683 det the,inhibition
R20437 T25682 T25683 amod IκB-α,inhibition
R20438 T25683 T25680 pobj inhibition,from
R20439 T25684 T25678 punct .,relieves
R20440 T25685 T25686 punct (,A
R20441 T25686 T25689 nmod A,representation
R20442 T25687 T25686 punct ),A
R20443 T25688 T25689 amod Schematic,representation
R20444 T25689 T25689 ROOT representation,representation
R20445 T25690 T25689 prep of,representation
R20446 T25691 T25695 amod wild-type,proteins
R20447 T25692 T25691 cc and,wild-type
R20448 T25693 T25691 conj mutant,wild-type
R20449 T25694 T25695 compound Tat,proteins
R20450 T25695 T25690 pobj proteins,of
R20451 T25696 T25689 punct .,representation
R20452 T25697 T25700 punct (,HA-IκB-α
R20453 T25698 T25700 nmod B,HA-IκB-α
R20454 T25699 T25700 punct ),HA-IκB-α
R20455 T25700 T25706 nsubjpass HA-IκB-α,incubated
R20456 T25701 T25703 punct (,µl
R20457 T25702 T25703 nummod 5,µl
R20458 T25703 T25700 appos µl,HA-IκB-α
R20459 T25704 T25703 punct ),µl
R20460 T25705 T25706 auxpass was,incubated
R20461 T25706 T25706 ROOT incubated,incubated
R20462 T25707 T25706 prep in,incubated
R20463 T25708 T25707 pobj presence,in
R20464 T25709 T25708 cc or,presence
R20465 T25710 T25708 conj absence,presence
R20466 T25711 T25710 prep of,absence
R20467 T25712 T25711 pobj FLAG-Tat,of
R20468 T25713 T25712 punct ",",FLAG-Tat
R20469 T25714 T25715 compound FLAG-Tat,T
R20470 T25715 T25712 conj T,FLAG-Tat
R20471 T25716 T25715 punct ",",T
R20473 T25718 T25715 conj N,T
R20474 T25719 T25720 punct (,"23,24"
R20475 T25720 T25718 parataxis "23,24",N
R20476 T25721 T25720 punct ),"23,24"
R20477 T25722 T25725 det A,K
R20478 T25723 T25725 punct ",",K
R20479 T25724 T25725 compound FLAG-Tat,K
R20480 T25725 T25725 ROOT K,K
R20481 T25726 T25725 punct (,K
R20482 T25727 T25725 appos "50,51",K
R20483 T25728 T25725 punct ),K
R20484 T25729 T25732 det A,R
R20485 T25730 T25732 punct ",",R
R20486 T25731 T25732 amod FLAG-Tat,R
R20487 T25732 T25732 ROOT R,R
R20488 T25733 T25732 punct (,R
R20489 T25734 T25732 appos 49,R
R20490 T25735 T25732 appos 57,R
R20491 T25736 T25732 punct ),R
R20492 T25737 T25740 det A,C
R20493 T25738 T25739 cc or,FLAG-Tat
R20494 T25739 T25740 compound FLAG-Tat,C
R20495 T25740 T25740 ROOT C,C
R20496 T25741 T25740 punct (,C
R20497 T25742 T25740 appos "22,25,27",C
R20498 T25743 T25740 punct ),C
R20499 T25744 T25747 det A,µl
R20500 T25745 T25747 punct (,µl
R20501 T25746 T25747 nummod 10,µl
R20502 T25747 T25747 ROOT µl,µl
R20503 T25748 T25747 punct ),µl
R20504 T25749 T25747 acl using,µl
R20505 T25750 T25749 prep in,using
R20506 T25751 T25753 amod vitro,proteins
R20507 T25752 T25753 amod translated,proteins
R20508 T25753 T25750 pobj proteins,in
R20509 T25754 T25747 punct .,µl

GO-BP

Id Subject Object Predicate Lexical cue
T26107 290-300 http://purl.obolibrary.org/obo/GO_0006412 denotes translated
T26109 290-309 http://purl.obolibrary.org/obo/GO_0006412 denotes translated proteins

sentences

Id Subject Object Predicate Lexical cue
T25204 0-310 Sentence denotes Tat relieves p65 from the IκB-α inhibition. (A) Schematic representation of wild-type and mutant Tat proteins. (B) HA-IκB-α (5 µl) was incubated in presence or absence of FLAG-Tat, FLAG-Tat T,N(23,24)A, FLAG-Tat K(50,51)A, FLAG-Tat R(49–57)A or FLAG-Tat C(22,25,27)A (10 µl) using in vitro translated proteins.
T150 0-310 Sentence denotes Tat relieves p65 from the IκB-α inhibition. (A) Schematic representation of wild-type and mutant Tat proteins. (B) HA-IκB-α (5 µl) was incubated in presence or absence of FLAG-Tat, FLAG-Tat T,N(23,24)A, FLAG-Tat K(50,51)A, FLAG-Tat R(49–57)A or FLAG-Tat C(22,25,27)A (10 µl) using in vitro translated proteins.

events-check-again

Id Subject Object Predicate Lexical cue
T26333 0-3 Protein denotes Tat
T26334 4-12 Negative_regulation denotes relieves
T26335 13-16 Protein denotes p65
T26336 26-31 Protein denotes IκB-α
T26337 32-42 Negative_regulation denotes inhibition
T26338 97-100 Protein denotes Tat
T26339 115-123 Protein denotes HA-IκB-α
T26340 171-179 Protein denotes FLAG-Tat
T26341 181-201 Protein denotes FLAG-Tat T,N(23,24)A
T26342 203-221 Protein denotes FLAG-Tat K(50,51)A
T26343 223-241 Protein denotes FLAG-Tat R(49–57)A
T26344 245-266 Protein denotes FLAG-Tat C(22,25,27)A
R20896 T26333 T26334 causeOf Tat,relieves
R20897 T26335 T26337 themeOf p65,inhibition
R20898 T26336 T26337 causeOf IκB-α,inhibition
R20899 T26337 T26334 themeOf inhibition,relieves

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T26369 13-16 Protein denotes p65
T26370 26-31 Protein denotes IκB-α
T26371 32-42 Negative_regulation denotes inhibition
T26372 4-12 Negative_regulation denotes relieves
T26373 90-109 Protein denotes mutant Tat proteins
T26374 115-117 Protein denotes HA
T26375 118-123 Protein denotes IκB-α
T26376 171-179 Protein denotes FLAG-Tat
T26377 181-185 Protein denotes FLAG
T26378 186-189 Protein denotes Tat
R20904 T26369 T26372 themeOf p65,relieves
R20905 T26370 T26371 themeOf IκB-α,inhibition
R20906 T26371 T26372 causeOf inhibition,relieves

test2

Id Subject Object Predicate Lexical cue Speculation
T25130 0-3 Protein denotes Tat
T25131 4-12 Negative_regulation denotes relieves
T25132 13-16 Protein denotes p65 true
T25133 26-31 Protein denotes IκB-α true
T25134 32-42 Negative_regulation denotes inhibition
T25135 97-100 Protein denotes Tat
T25136 115-123 Protein denotes HA-IκB-α
T25137 160-167 Negative_regulation denotes absence
T25138 171-179 Protein denotes FLAG-Tat
T25139 181-201 Protein denotes FLAG-Tat T,N(23,24)A
T25140 203-221 Protein denotes FLAG-Tat K(50,51)A
T25141 223-241 Protein denotes FLAG-Tat R(49–57)A
T25142 245-266 Protein denotes FLAG-Tat C(22,25,27)A
R20015 T25130 T25131 causeOf Tat,relieves
R20016 T25132 T25134 themeOf p65,inhibition
R20017 T25133 T25134 causeOf IκB-α,inhibition
R20018 T25134 T25131 themeOf inhibition,relieves

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T25168 0-3 Protein denotes Tat
T25169 4-12 Negative_regulation denotes relieves
T25170 13-16 Protein denotes p65
T25171 26-31 Protein denotes IκB-α
T25172 32-42 Negative_regulation denotes inhibition
T25173 97-100 Protein denotes Tat
T25174 115-123 Protein denotes HA-IκB-α
T25175 171-179 Protein denotes FLAG-Tat
T25176 181-201 Protein denotes FLAG-Tat T,N(23,24)A
T25177 203-221 Protein denotes FLAG-Tat K(50,51)A
T25178 223-241 Protein denotes FLAG-Tat R(49–57)A
T25179 245-266 Protein denotes FLAG-Tat C(22,25,27)A
R20025 T25168 T25169 causeOf Tat,relieves
R20026 T25170 T25172 themeOf p65,inhibition
R20027 T25171 T25172 causeOf IκB-α,inhibition
R20028 T25172 T25169 themeOf inhibition,relieves

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25592 0-3 P04608 denotes Tat
T25593 0-3 Q8UMQ1 denotes Tat
T25594 0-3 P04610 denotes Tat
T25595 0-3 P04605 denotes Tat
T25596 13-16 Q04206 denotes p65
T25597 13-16 P21579 denotes p65
T25598 97-100 P04605 denotes Tat
T25599 97-100 Q8UMQ1 denotes Tat
T25600 97-100 P04610 denotes Tat
T25601 97-100 P04608 denotes Tat
T25602 176-179 P04605 denotes Tat
T25603 176-179 P04608 denotes Tat
T25604 176-179 Q8UMQ1 denotes Tat
T25605 176-179 P04610 denotes Tat
T25606 186-189 Q8UMQ1 denotes Tat
T25607 186-189 P04610 denotes Tat
T25608 186-189 P04608 denotes Tat
T25609 186-189 P04605 denotes Tat
T25610 208-211 Q8UMQ1 denotes Tat
T25611 208-211 P04610 denotes Tat
T25612 208-211 P04608 denotes Tat
T25613 208-211 P04605 denotes Tat
T25614 228-231 P04610 denotes Tat
T25615 228-231 P04608 denotes Tat
T25616 228-231 P04605 denotes Tat
T25617 228-231 Q8UMQ1 denotes Tat
T25618 250-253 P04610 denotes Tat
T25619 250-253 Q8UMQ1 denotes Tat
T25620 250-253 P04608 denotes Tat
T25621 250-253 P04605 denotes Tat