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PMC:3333881 / 1980-2281 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-12360211-77584395 10-11 12360211 denotes 3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1556 2-4 TO denotes to
T1557 5-8 NN denotes DNA
T1558 9-10 -LRB- denotes (
T1559 10-11 CD denotes 3
T1560 11-12 -RRB- denotes )
T1561 14-16 IN denotes In
T1562 17-20 DT denotes the
T1563 21-30 JJ denotes canonical
T1564 31-38 NN denotes pathway
T1565 39-41 IN denotes of
T1566 42-47 NN denotes NF-κB
T1567 48-58 NN denotes activation
T1568 58-59 -COMMA- denotes ,
T1569 60-63 DT denotes the
T1570 64-73 VB denotes activated
T1571 74-77 NN denotes IκB
T1572 78-84 NN denotes kinase
T1573 85-86 -LRB- denotes (
T1574 86-89 NN denotes IKK
T1575 89-90 -RRB- denotes )
T1576 91-105 VB denotes phosphorylates
T1577 106-109 NN denotes IκB
T1578 110-112 IN denotes at
T1579 113-121 JJ denotes specific
T1580 122-128 NN denotes serine
T1581 129-137 NN denotes residues
T1582 138-142 WDT denotes that
T1583 143-149 VB denotes target
T1584 150-153 DT denotes the
T1585 154-161 NN denotes protein
T1586 162-164 TO denotes to
T1587 165-179 NN denotes ubiquitination
T1588 180-183 CC denotes and
T1589 184-195 JJ denotes proteasomal
T1590 196-207 NN denotes degradation
T1591 207-208 -COMMA- denotes ,
T1592 209-214 WDT denotes which
T1593 215-223 VB denotes releases
T1594 224-227 DT denotes the
T1595 228-238 JJ denotes functional
T1596 239-244 NN denotes NF-κB
T1597 245-252 NN denotes complex
T1598 253-255 IN denotes in
T1599 256-259 DT denotes the
T1600 260-267 NN denotes nucleus
T1601 269-274 NN denotes IκB-α
T1602 274-275 -COMMA- denotes ,
T1603 276-279 DT denotes the
T1604 280-284 RB denotes most
T1605 285-293 JJ denotes abundant
R1378 T1557 T1556 arg2Of DNA,to
R1379 T1557 T1558 arg1Of DNA,(
R1380 T1559 T1558 arg2Of 3,(
R1381 T1560 T1558 arg3Of ),(
R1382 T1564 T1561 arg2Of pathway,In
R1383 T1564 T1562 arg1Of pathway,the
R1384 T1564 T1563 arg1Of pathway,canonical
R1385 T1564 T1565 arg1Of pathway,of
R1386 T1567 T1565 arg2Of activation,of
R1387 T1567 T1566 arg1Of activation,NF-κB
R1388 T1572 T1569 arg1Of kinase,the
R1389 T1572 T1570 arg2Of kinase,activated
R1390 T1572 T1571 arg1Of kinase,IκB
R1391 T1572 T1573 arg1Of kinase,(
R1392 T1572 T1576 arg1Of kinase,phosphorylates
R1393 T1574 T1573 arg2Of IKK,(
R1394 T1575 T1573 arg3Of ),(
R1395 T1576 T1561 arg1Of phosphorylates,In
R1396 T1576 T1568 arg1Of phosphorylates,","
R1397 T1576 T1578 arg1Of phosphorylates,at
R1398 T1577 T1576 arg2Of IκB,phosphorylates
R1399 T1581 T1578 arg2Of residues,at
R1400 T1581 T1579 arg1Of residues,specific
R1401 T1581 T1580 arg1Of residues,serine
R1402 T1581 T1582 arg1Of residues,that
R1403 T1581 T1583 arg1Of residues,target
R1404 T1585 T1583 arg2Of protein,target
R1405 T1585 T1584 arg1Of protein,the
R1406 T1585 T1586 arg1Of protein,to
R1407 T1587 T1588 arg1Of ubiquitination,and
R1408 T1588 T1586 arg2Of and,to
R1409 T1588 T1591 arg1Of and,","
R1410 T1588 T1592 arg1Of and,which
R1411 T1588 T1593 arg1Of and,releases
R1412 T1590 T1588 arg2Of degradation,and
R1413 T1590 T1589 arg1Of degradation,proteasomal
R1414 T1597 T1593 arg2Of complex,releases
R1415 T1597 T1594 arg1Of complex,the
R1416 T1597 T1595 arg1Of complex,functional
R1417 T1597 T1596 arg1Of complex,NF-κB
R1418 T1597 T1598 arg1Of complex,in
R1419 T1600 T1598 arg2Of nucleus,in
R1420 T1600 T1599 arg1Of nucleus,the
R1421 T1601 T1602 arg1Of IκB-α,","
R1425 T1605 T1604 arg1Of abundant,most

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2436 2-4 TO denotes to
T2437 5-8 NNP denotes DNA
T2438 9-10 -LRB- denotes (
T2439 10-11 LS denotes 3
T2440 11-12 -RRB- denotes )
T2441 12-13 . denotes .
T2442 14-16 IN denotes In
T2443 17-20 DT denotes the
T2444 21-30 JJ denotes canonical
T2445 31-38 NN denotes pathway
T2446 39-41 IN denotes of
T2447 42-47 JJ denotes NF-κB
T2448 48-58 NN denotes activation
T2449 58-59 , denotes ,
T2450 60-63 DT denotes the
T2451 64-73 VBN denotes activated
T2452 74-77 NNP denotes IκB
T2453 78-84 NN denotes kinase
T2454 85-86 -LRB- denotes (
T2455 86-89 NNP denotes IKK
T2456 89-90 -RRB- denotes )
T2457 91-105 VBZ denotes phosphorylates
T2458 106-109 NNP denotes IκB
T2459 110-112 IN denotes at
T2460 113-121 JJ denotes specific
T2461 122-128 NN denotes serine
T2462 129-137 NNS denotes residues
T2463 138-142 WDT denotes that
T2464 143-149 VBP denotes target
T2465 150-153 DT denotes the
T2466 154-161 NN denotes protein
T2467 162-164 TO denotes to
T2468 165-179 NN denotes ubiquitination
T2469 180-183 CC denotes and
T2470 184-195 JJ denotes proteasomal
T2471 196-207 NN denotes degradation
T2472 207-208 , denotes ,
T2473 209-214 WDT denotes which
T2474 215-223 VBZ denotes releases
T2475 224-227 DT denotes the
T2476 228-238 JJ denotes functional
T2477 239-244 NN denotes NF-κB
T2478 245-252 NN denotes complex
T2479 253-255 IN denotes in
T2480 256-259 DT denotes the
T2481 260-267 NN denotes nucleus
T2482 267-268 . denotes .
T2483 269-274 NNP denotes IκB-α
T2484 274-275 , denotes ,
T2485 276-279 DT denotes the
T2486 280-284 RBS denotes most
T2487 285-293 JJ denotes abundant
R2129 T2474 T2471 relcl releases,degradation
R2130 T2475 T2478 det the,complex
R2131 T2476 T2478 amod functional,complex
R2133 T2477 T2478 compound NF-κB,complex
R2134 T2478 T2474 dobj complex,releases
R2136 T2479 T2478 prep in,complex
R2137 T2480 T2481 det the,nucleus
R2138 T2481 T2479 pobj nucleus,in
R2140 T2482 T2457 punct .,phosphorylates
R2142 T2484 T2483 punct ",",IκB-α
R2145 T2486 T2487 advmod most,abundant
R2303 T2437 T2436 pobj DNA,to
R2308 T2438 T2439 punct (,3
R2312 T2439 T2437 appos 3,DNA
R2313 T2440 T2439 punct ),3
R2319 T2442 T2457 prep In,phosphorylates
R2323 T2443 T2445 det the,pathway
R2327 T2444 T2445 amod canonical,pathway
R2331 T2445 T2442 pobj pathway,In
R2335 T2446 T2445 prep of,pathway
R2339 T2447 T2448 amod NF-κB,activation
R2344 T2448 T2446 pobj activation,of
R2348 T2449 T2457 punct ",",phosphorylates
R2354 T2450 T2453 det the,kinase
R2358 T2451 T2453 amod activated,kinase
R2362 T2452 T2453 compound IκB,kinase
R2365 T2453 T2457 nsubj kinase,phosphorylates
R2367 T2454 T2455 punct (,IKK
R2371 T2455 T2453 appos IKK,kinase
R2375 T2456 T2453 punct ),kinase
R2379 T2457 T2457 ROOT phosphorylates,phosphorylates
R2383 T2458 T2457 dobj IκB,phosphorylates
R2387 T2459 T2457 prep at,phosphorylates
R2390 T2460 T2462 amod specific,residues
R2391 T2461 T2462 compound serine,residues
R2392 T2462 T2459 pobj residues,at
R2394 T2463 T2464 nsubj that,target
R2398 T2464 T2462 relcl target,residues
R2405 T2465 T2466 det the,protein
R2410 T2466 T2464 dobj protein,target
R2413 T2467 T2468 aux to,ubiquitination
R2417 T2468 T2464 advcl ubiquitination,target
R2421 T2469 T2468 cc and,ubiquitination
R2425 T2470 T2471 amod proteasomal,degradation
R2429 T2471 T2468 conj degradation,ubiquitination
R2433 T2472 T2471 punct ",",degradation
R2437 T2473 T2474 nsubj which,releases

GO-BP

Id Subject Object Predicate Lexical cue
T3172 42-58 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T3175 86-89 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T3179 154-179 http://purl.obolibrary.org/obo/GO_0016567 denotes protein to ubiquitination
T3180 196-207 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation

GO-MF

Id Subject Object Predicate Lexical cue
T3234 86-89 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-CC

Id Subject Object Predicate Lexical cue
T3207 239-252 http://purl.obolibrary.org/obo/GO_0071159 denotes NF-κB complex
T3209 260-267 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

sentences

Id Subject Object Predicate Lexical cue
T1433 14-268 Sentence denotes In the canonical pathway of NF-κB activation, the activated IκB kinase (IKK) phosphorylates IκB at specific serine residues that target the protein to ubiquitination and proteasomal degradation, which releases the functional NF-κB complex in the nucleus.
T15 14-268 Sentence denotes In the canonical pathway of NF-κB activation, the activated IκB kinase (IKK) phosphorylates IκB at specific serine residues that target the protein to ubiquitination and proteasomal degradation, which releases the functional NF-κB complex in the nucleus.

events-check-again

Id Subject Object Predicate Lexical cue
T4068 269-274 Protein denotes IκB-α

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4204 42-47 Protein denotes NF-κB
T4205 74-84 Protein denotes IκB kinase
T4206 86-89 Protein denotes IKK
T4207 106-109 Protein denotes IκB
T4208 239-244 Protein denotes NF-κB
T4209 48-58 Positive_regulation denotes activation
T4210 64-73 Positive_regulation denotes activated
T4211 64-73 Positive_regulation denotes activated
T4212 91-105 Phosphorylation denotes phosphorylates
T4213 91-105 Phosphorylation denotes phosphorylates
T4214 91-105 Phosphorylation denotes phosphorylates
T4215 196-207 Protein_catabolism denotes degradation
T4216 196-207 Protein_catabolism denotes degradation
T4217 215-223 Positive_regulation denotes releases
T4218 215-223 Positive_regulation denotes releases
T4219 245-252 Binding denotes complex
T4220 143-149 Regulation denotes target
T4221 143-149 Regulation denotes target
T4222 269-274 Protein denotes IκB-α
R3789 T4204 T4209 themeOf NF-κB,activation
R3791 T4205 T4210 themeOf IκB kinase,activated
R3792 T4205 T4212 themeOf IκB kinase,phosphorylates
R3793 T4206 T4211 themeOf IKK,activated
R3794 T4206 T4213 themeOf IKK,phosphorylates
R3795 T4206 T4215 themeOf IKK,degradation
R3797 T4207 T4214 themeOf IκB,phosphorylates
R3798 T4207 T4216 themeOf IκB,degradation
R3800 T4208 T4219 themeOf NF-κB,complex
R3804 T4215 T4217 themeOf degradation,releases
R3805 T4215 T4220 themeOf degradation,target
R3807 T4216 T4218 themeOf degradation,releases
R3808 T4216 T4221 themeOf degradation,target

test2

Id Subject Object Predicate Lexical cue
T1150 269-274 Protein denotes IκB-α

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1313 269-274 Protein denotes IκB-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2259 74-84 O15111 denotes IκB kinase
T2260 74-84 Q60680-2 denotes IκB kinase