PMC:3333881 / 12365-14746
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7546 | 0-9 | NNP | denotes | Chromatin |
| T7547 | 10-29 | NN | denotes | immunoprecipitation |
| T7548 | 30-35 | NN | denotes | assay |
| T7549 | 36-41 | NNS | denotes | Cells |
| T7550 | 42-46 | VBD | denotes | were |
| T7551 | 47-52 | VBN | denotes | fixed |
| T7552 | 53-55 | IN | denotes | by |
| T7553 | 56-62 | VBG | denotes | adding |
| T7554 | 63-75 | NN | denotes | formaldehyde |
| T7555 | 76-77 | -LRB- | denotes | ( |
| T7556 | 77-90 | NNP | denotes | Sigma-Aldrich |
| T7589 | 245-248 | NNP | denotes | PBS |
| T7590 | 248-249 | , | denotes | , |
| T7591 | 250-253 | CC | denotes | and |
| T7592 | 254-261 | VBD | denotes | scraped |
| T7593 | 261-262 | . | denotes | . |
| T7594 | 263-268 | IN | denotes | After |
| T7595 | 269-283 | NN | denotes | centrifugation |
| T7596 | 283-284 | , | denotes | , |
| T7597 | 285-290 | NNS | denotes | cells |
| T7598 | 291-295 | VBD | denotes | were |
| T7599 | 296-298 | CD | denotes | 10 |
| T7600 | 299-302 | NN | denotes | min |
| T7601 | 303-308 | VBN | denotes | lysed |
| T7602 | 309-311 | IN | denotes | in |
| T7603 | 312-317 | NN | denotes | lysis |
| T7604 | 318-324 | NN | denotes | buffer |
| T7605 | 325-326 | -LRB- | denotes | ( |
| T7606 | 326-327 | CD | denotes | 5 |
| T7607 | 328-330 | NNP | denotes | mM |
| T7608 | 331-336 | NNP | denotes | PIPES |
| T7609 | 337-339 | NNP | denotes | pH |
| T7610 | 340-343 | CD | denotes | 8.0 |
| T7611 | 343-344 | , | denotes | , |
| T7612 | 345-347 | CD | denotes | 85 |
| T7613 | 348-350 | NNP | denotes | mM |
| T7614 | 351-354 | NNP | denotes | KCl |
| T7615 | 354-355 | , | denotes | , |
| T7616 | 356-359 | CD | denotes | 0.5 |
| T7617 | 359-360 | NN | denotes | % |
| T7618 | 361-366 | NN | denotes | NP-40 |
| T7619 | 366-367 | -RRB- | denotes | ) |
| T7620 | 368-380 | VBN | denotes | supplemented |
| T7621 | 381-385 | IN | denotes | with |
| T7622 | 386-387 | CD | denotes | 1 |
| T7623 | 387-388 | CD | denotes | × |
| T7624 | 389-397 | JJ | denotes | Complete |
| T7625 | 398-406 | NNP | denotes | Protease |
| T7626 | 407-416 | NNP | denotes | Inhibitor |
| T7627 | 417-418 | -LRB- | denotes | ( |
| T7628 | 418-423 | NNP | denotes | Roche |
| T7629 | 424-434 | NNP | denotes | Diagnostic |
| T7630 | 435-439 | NNP | denotes | GmbH |
| T7631 | 439-440 | -RRB- | denotes | ) |
| T7632 | 440-441 | . | denotes | . |
| T7633 | 442-448 | NNP | denotes | Nuclei |
| T7634 | 449-453 | VBD | denotes | were |
| T7635 | 454-463 | VBN | denotes | pelletted |
| T7636 | 464-465 | -LRB- | denotes | ( |
| T7637 | 465-469 | CD | denotes | 1000 |
| T7638 | 470-471 | NN | denotes | × |
| T7639 | 472-473 | NN | denotes | g |
| T7640 | 473-474 | , | denotes | , |
| T7641 | 475-476 | CD | denotes | 5 |
| T7642 | 477-480 | NN | denotes | min |
| T7643 | 480-481 | -RRB- | denotes | ) |
| T7644 | 481-482 | , | denotes | , |
| T7645 | 483-486 | CC | denotes | and |
| T7646 | 487-498 | VBD | denotes | resuspended |
| T7647 | 499-501 | IN | denotes | in |
| T7648 | 502-512 | NN | denotes | sonication |
| T7649 | 513-519 | NN | denotes | buffer |
| T7650 | 520-521 | -LRB- | denotes | ( |
| T7651 | 521-523 | CD | denotes | 50 |
| T7652 | 524-526 | NNP | denotes | mM |
| T7653 | 527-531 | NNP | denotes | Tris |
| T7654 | 532-535 | NNP | denotes | HCl |
| T7655 | 536-538 | NNP | denotes | pH |
| T7656 | 539-542 | CD | denotes | 8.0 |
| T7657 | 542-543 | , | denotes | , |
| T7658 | 544-545 | CD | denotes | 1 |
| T7659 | 545-546 | NN | denotes | % |
| T7660 | 547-550 | NNP | denotes | SDS |
| T7661 | 550-551 | , | denotes | , |
| T7662 | 552-554 | CD | denotes | 10 |
| T7663 | 555-557 | NNP | denotes | mM |
| T7664 | 558-562 | NNP | denotes | EDTA |
| T7665 | 562-563 | -RRB- | denotes | ) |
| T7666 | 563-564 | . | denotes | . |
| T7667 | 565-574 | NNP | denotes | Chromatin |
| T7668 | 575-578 | VBD | denotes | was |
| T7669 | 579-588 | VBN | denotes | sonicated |
| T7670 | 589-594 | VBG | denotes | using |
| T7671 | 595-603 | NNP | denotes | Bandelin |
| T7672 | 604-612 | NNPS | denotes | Sonoplus |
| T7673 | 613-617 | NNP | denotes | GM70 |
| T7674 | 618-619 | -LRB- | denotes | ( |
| T7675 | 619-627 | NNP | denotes | Bandelin |
| T7676 | 628-638 | NNP | denotes | Electronic |
| T7677 | 638-639 | , | denotes | , |
| T7678 | 640-646 | NNP | denotes | Berlin |
| T7679 | 646-647 | , | denotes | , |
| T7680 | 648-655 | NNP | denotes | Germany |
| T7681 | 655-656 | -RRB- | denotes | ) |
| T7682 | 656-657 | , | denotes | , |
| T7683 | 658-669 | VBN | denotes | centrifuged |
| T7684 | 670-671 | -LRB- | denotes | ( |
| T7685 | 671-673 | CD | denotes | 14 |
| T7686 | 674-677 | CD | denotes | 000 |
| T7687 | 678-679 | NN | denotes | × |
| T7688 | 680-681 | NN | denotes | g |
| T7689 | 681-682 | , | denotes | , |
| T7690 | 683-685 | CD | denotes | 15 |
| T7691 | 686-689 | NN | denotes | min |
| T7692 | 689-690 | -RRB- | denotes | ) |
| T7693 | 690-691 | , | denotes | , |
| T7694 | 692-695 | CC | denotes | and |
| T7695 | 696-707 | NN | denotes | supernatant |
| T7696 | 708-711 | VBD | denotes | was |
| T7697 | 712-719 | JJ | denotes | 10-fold |
| T7698 | 720-727 | VBN | denotes | diluted |
| T7699 | 728-730 | IN | denotes | in |
| T7700 | 731-739 | NN | denotes | dilution |
| T7701 | 740-746 | NN | denotes | buffer |
| T7702 | 747-748 | -LRB- | denotes | ( |
| T7703 | 748-752 | CD | denotes | 0.01 |
| T7704 | 752-753 | NN | denotes | % |
| T7705 | 754-757 | NNP | denotes | SDS |
| T7706 | 757-758 | , | denotes | , |
| T7707 | 759-763 | CD | denotes | 16.7 |
| T7708 | 764-766 | NNP | denotes | mM |
| T7709 | 767-771 | NNP | denotes | Tris |
| T7710 | 772-775 | NNP | denotes | HCl |
| T7711 | 776-778 | NNP | denotes | pH |
| T7712 | 779-782 | CD | denotes | 8.0 |
| T7713 | 782-783 | , | denotes | , |
| T7714 | 784-787 | CD | denotes | 1.1 |
| T7715 | 787-788 | NN | denotes | % |
| T7716 | 789-795 | NNP | denotes | Triton |
| T7717 | 796-801 | NNP | denotes | X-100 |
| T7718 | 801-802 | , | denotes | , |
| T7719 | 803-806 | CD | denotes | 167 |
| T7720 | 807-809 | NNP | denotes | mM |
| T7721 | 810-814 | NNP | denotes | NaCl |
| T7722 | 814-815 | , | denotes | , |
| T7723 | 816-819 | CD | denotes | 1.2 |
| T7724 | 820-822 | NNP | denotes | mM |
| T7725 | 823-827 | NNP | denotes | EDTA |
| T7726 | 827-828 | -RRB- | denotes | ) |
| T7727 | 828-829 | . | denotes | . |
| T7728 | 830-837 | NNS | denotes | Samples |
| T7729 | 838-842 | VBD | denotes | were |
| T7730 | 843-854 | JJ | denotes | pre-cleared |
| T7731 | 855-857 | IN | denotes | by |
| T7732 | 858-861 | JJ | denotes | 3-h |
| T7733 | 862-872 | NN | denotes | incubation |
| T7734 | 873-877 | IN | denotes | with |
| T7735 | 878-880 | CD | denotes | 20 |
| T7736 | 881-883 | NN | denotes | µl |
| T7737 | 884-886 | IN | denotes | of |
| T7738 | 887-894 | NN | denotes | protein |
| T7739 | 895-896 | NNP | denotes | G |
| T7740 | 897-904 | JJ | denotes | agarose |
| T7741 | 905-910 | NNS | denotes | beads |
| T7742 | 911-919 | VBN | denotes | followed |
| T7743 | 920-922 | IN | denotes | by |
| T7744 | 923-933 | NN | denotes | incubation |
| T7745 | 934-938 | IN | denotes | with |
| T7746 | 939-949 | NNS | denotes | antibodies |
| T7747 | 950-957 | IN | denotes | against |
| T7748 | 958-961 | DT | denotes | the |
| T7749 | 962-970 | JJ | denotes | analysed |
| T7750 | 971-979 | NNS | denotes | proteins |
| T7751 | 979-980 | . | denotes | . |
| T7752 | 981-988 | JJ | denotes | Primary |
| T7753 | 989-999 | NNS | denotes | antibodies |
| T7754 | 1000-1004 | VBD | denotes | were |
| T7755 | 1004-1005 | : | denotes | : |
| T7756 | 1006-1014 | JJ | denotes | anti-p65 |
| T7757 | 1015-1016 | -LRB- | denotes | ( |
| T7758 | 1016-1022 | JJ | denotes | sc-372 |
| T7759 | 1022-1023 | -RRB- | denotes | ) |
| T7760 | 1023-1024 | , | denotes | , |
| T7761 | 1025-1034 | JJ | denotes | anti-IκBα |
| T7762 | 1035-1036 | -LRB- | denotes | ( |
| T7763 | 1036-1042 | JJ | denotes | sc-203 |
| T7764 | 1042-1043 | -RRB- | denotes | ) |
| T7765 | 1044-1047 | CC | denotes | and |
| T7766 | 1048-1054 | NN | denotes | rabbit |
| T7767 | 1055-1058 | NNP | denotes | IgG |
| T7768 | 1059-1060 | -LRB- | denotes | ( |
| T7769 | 1060-1067 | JJ | denotes | sc-2027 |
| T7770 | 1067-1068 | -RRB- | denotes | ) |
| T7771 | 1069-1073 | IN | denotes | from |
| T7772 | 1074-1079 | NNP | denotes | Santa |
| T7773 | 1080-1084 | NNP | denotes | Cruz |
| T7774 | 1085-1098 | NNP | denotes | Biotechnology |
| T7775 | 1098-1099 | : | denotes | ; |
| T7776 | 1100-1109 | NNP | denotes | anti-FLAG |
| T7777 | 1110-1112 | NNP | denotes | M2 |
| T7778 | 1113-1117 | IN | denotes | from |
| T7779 | 1118-1123 | NNP | denotes | Sigma |
| T7780 | 1124-1131 | NNP | denotes | Aldrich |
| T7781 | 1131-1132 | . | denotes | . |
| T7782 | 1133-1153 | NNS | denotes | Immunoprecipitations |
| T7783 | 1154-1158 | VBD | denotes | were |
| T7784 | 1159-1166 | VBN | denotes | carried |
| T7785 | 1167-1170 | RP | denotes | out |
| T7786 | 1171-1173 | IN | denotes | at |
| T7787 | 1174-1175 | CD | denotes | 4 |
| T7788 | 1175-1176 | CD | denotes | ° |
| T7789 | 1176-1177 | NNP | denotes | C |
| T7790 | 1178-1187 | JJ | denotes | overnight |
| T7791 | 1188-1191 | CC | denotes | and |
| T7792 | 1192-1198 | JJ | denotes | immune |
| T7793 | 1199-1208 | NNS | denotes | complexes |
| T7794 | 1209-1213 | VBD | denotes | were |
| T7795 | 1214-1223 | VBN | denotes | collected |
| T7796 | 1224-1228 | IN | denotes | with |
| T7797 | 1229-1236 | NN | denotes | protein |
| T7798 | 1237-1238 | NNP | denotes | G |
| T7799 | 1239-1246 | JJ | denotes | agarose |
| T7800 | 1247-1252 | NNS | denotes | beads |
| T7801 | 1252-1253 | , | denotes | , |
| T7802 | 1254-1260 | VBD | denotes | washed |
| T7803 | 1261-1265 | CD | denotes | five |
| T7804 | 1266-1271 | NNS | denotes | times |
| T7805 | 1272-1276 | IN | denotes | with |
| T7806 | 1277-1280 | JJ | denotes | low |
| T7807 | 1281-1285 | NN | denotes | salt |
| T7808 | 1286-1292 | NN | denotes | buffer |
| T7809 | 1293-1294 | -LRB- | denotes | ( |
| T7810 | 1294-1296 | CD | denotes | 20 |
| T7811 | 1297-1299 | NNP | denotes | mM |
| T7812 | 1300-1304 | NNP | denotes | Tris |
| T7813 | 1305-1308 | NNP | denotes | HCl |
| T7814 | 1309-1311 | NNP | denotes | pH |
| T7815 | 1312-1315 | CD | denotes | 8.0 |
| T7816 | 1315-1316 | , | denotes | , |
| T7817 | 1317-1320 | CD | denotes | 0.1 |
| T7818 | 1320-1321 | NN | denotes | % |
| T7819 | 1322-1325 | NNP | denotes | SDS |
| T7820 | 1325-1326 | , | denotes | , |
| T7821 | 1327-1328 | CD | denotes | 1 |
| T7822 | 1328-1329 | NN | denotes | % |
| T7823 | 1330-1336 | NNP | denotes | Triton |
| T7824 | 1337-1342 | NNP | denotes | X-100 |
| T7825 | 1342-1343 | , | denotes | , |
| T7826 | 1344-1345 | CD | denotes | 2 |
| T7827 | 1346-1348 | NNP | denotes | mM |
| T7828 | 1349-1353 | NNP | denotes | EDTA |
| T7829 | 1353-1354 | , | denotes | , |
| T7830 | 1355-1358 | CD | denotes | 150 |
| T7831 | 1359-1361 | NNP | denotes | mM |
| T7832 | 1362-1366 | NNP | denotes | NaCl |
| T7833 | 1366-1367 | -RRB- | denotes | ) |
| T7834 | 1367-1368 | , | denotes | , |
| T7835 | 1369-1373 | CD | denotes | four |
| T7836 | 1374-1379 | NNS | denotes | times |
| T7837 | 1380-1384 | IN | denotes | with |
| T7838 | 1385-1389 | JJ | denotes | high |
| T7839 | 1390-1394 | NN | denotes | salt |
| T7840 | 1395-1401 | NN | denotes | buffer |
| T7841 | 1402-1403 | -LRB- | denotes | ( |
| T7842 | 1403-1405 | CD | denotes | 20 |
| T7843 | 1406-1408 | NNP | denotes | mM |
| T7844 | 1409-1413 | NNP | denotes | Tris |
| T7845 | 1414-1417 | NNP | denotes | HCl |
| T7846 | 1418-1420 | NNP | denotes | pH |
| T7847 | 1421-1424 | CD | denotes | 8.0 |
| T7848 | 1424-1425 | , | denotes | , |
| T7849 | 1426-1429 | CD | denotes | 0.1 |
| T7850 | 1429-1430 | NN | denotes | % |
| T7851 | 1431-1434 | NNP | denotes | SDS |
| T7852 | 1434-1435 | , | denotes | , |
| T7853 | 1436-1437 | CD | denotes | 1 |
| T7854 | 1437-1438 | NN | denotes | % |
| T7855 | 1439-1445 | NNP | denotes | Triton |
| T7856 | 1446-1451 | NNP | denotes | X-100 |
| T7857 | 1451-1452 | , | denotes | , |
| T7858 | 1453-1454 | CD | denotes | 2 |
| T7859 | 1455-1457 | NNP | denotes | mM |
| T7860 | 1458-1462 | NNP | denotes | EDTA |
| T7861 | 1462-1463 | , | denotes | , |
| T7862 | 1464-1467 | CD | denotes | 500 |
| T7863 | 1468-1470 | NNP | denotes | mM |
| T7864 | 1471-1475 | NNP | denotes | NaCl |
| T7865 | 1475-1476 | -RRB- | denotes | ) |
| T7866 | 1476-1477 | , | denotes | , |
| T7867 | 1478-1482 | RB | denotes | once |
| T7868 | 1483-1487 | IN | denotes | with |
| T7869 | 1488-1490 | NNP | denotes | TE |
| T7870 | 1491-1497 | NN | denotes | buffer |
| T7871 | 1498-1499 | -LRB- | denotes | ( |
| T7872 | 1499-1501 | CD | denotes | 10 |
| T7873 | 1502-1504 | NNP | denotes | mM |
| T7874 | 1505-1509 | NNP | denotes | Tris |
| T7875 | 1510-1513 | NNP | denotes | HCl |
| T7876 | 1514-1516 | NNP | denotes | pH |
| T7877 | 1517-1520 | CD | denotes | 8.0 |
| T7878 | 1520-1521 | , | denotes | , |
| T7879 | 1522-1523 | CD | denotes | 1 |
| T7915 | 1702-1705 | NN | denotes | kit |
| T7916 | 1706-1707 | -LRB- | denotes | ( |
| T7917 | 1707-1713 | NNP | denotes | QIAGEN |
| T7918 | 1713-1714 | -RRB- | denotes | ) |
| T7919 | 1715-1718 | CC | denotes | and |
| T7920 | 1719-1725 | VBD | denotes | eluted |
| T7921 | 1726-1728 | IN | denotes | in |
| T7922 | 1729-1731 | CD | denotes | 50 |
| T7923 | 1732-1734 | NN | denotes | µl |
| T7924 | 1735-1742 | JJ | denotes | sterile |
| T7925 | 1743-1752 | JJ | denotes | distilled |
| T7926 | 1753-1758 | NN | denotes | water |
| T7927 | 1758-1759 | . | denotes | . |
| T7928 | 1760-1768 | JJ | denotes | Specific |
| T7929 | 1769-1779 | NN | denotes | enrichment |
| T7930 | 1780-1782 | IN | denotes | in |
| T7931 | 1783-1788 | JJ | denotes | NF-κB |
| T7932 | 1789-1797 | NN | denotes | enhancer |
| T7933 | 1798-1807 | NNS | denotes | sequences |
| T7934 | 1808-1811 | VBD | denotes | was |
| T7935 | 1812-1820 | VBN | denotes | measured |
| T7936 | 1821-1823 | IN | denotes | by |
| T7937 | 1824-1833 | JJ | denotes | real-time |
| T7938 | 1834-1837 | NNP | denotes | PCR |
| T7939 | 1838-1840 | IN | denotes | of |
| T7940 | 1841-1850 | NN | denotes | chromatin |
| T7941 | 1851-1870 | NN | denotes | immunoprecipitation |
| T7942 | 1871-1872 | -LRB- | denotes | ( |
| T7943 | 1872-1876 | NNP | denotes | ChIP |
| T7944 | 1876-1877 | -RRB- | denotes | ) |
| T7956 | 1940-1944 | VBD | denotes | were |
| T7957 | 1945-1952 | VBN | denotes | carried |
| T7958 | 1953-1956 | RP | denotes | out |
| T7959 | 1957-1961 | IN | denotes | with |
| T7960 | 1962-1965 | DT | denotes | the |
| T7961 | 1966-1973 | NNP | denotes | iCycler |
| T7962 | 1974-1976 | NNP | denotes | iQ |
| T7963 | 1977-1986 | NNP | denotes | Real-Time |
| T7964 | 1987-1996 | NN | denotes | detection |
| T7965 | 1997-2003 | NN | denotes | system |
| T7966 | 2004-2005 | -LRB- | denotes | ( |
| T7967 | 2005-2012 | NNP | denotes | Bio-Rad |
| T7968 | 2013-2025 | NNPS | denotes | Laboratories |
| T7969 | 2025-2026 | -RRB- | denotes | ) |
| T7970 | 2027-2032 | VBG | denotes | using |
| T7971 | 2033-2036 | DT | denotes | the |
| T7972 | 2037-2046 | JJ | denotes | following |
| T7973 | 2047-2057 | NNS | denotes | conditions |
| T7974 | 2057-2058 | : | denotes | : |
| T7975 | 2059-2061 | CD | denotes | 95 |
| T7976 | 2061-2062 | NN | denotes | ° |
| T7977 | 2062-2063 | NNP | denotes | C |
| T7978 | 2063-2064 | , | denotes | , |
| T7979 | 2065-2066 | CD | denotes | 1 |
| T7980 | 2067-2070 | NN | denotes | min |
| T7981 | 2070-2071 | : | denotes | ; |
| T7982 | 2072-2073 | -LRB- | denotes | ( |
| T7983 | 2073-2075 | CD | denotes | 94 |
| T7984 | 2075-2076 | NN | denotes | ° |
| T7985 | 2076-2077 | NNP | denotes | C |
| T7986 | 2077-2078 | , | denotes | , |
| T7987 | 2079-2081 | CD | denotes | 10 |
| T7988 | 2082-2083 | PRP | denotes | s |
| T7989 | 2083-2084 | : | denotes | ; |
| T7990 | 2085-2087 | CD | denotes | 60 |
| T7991 | 2087-2088 | NN | denotes | ° |
| T7992 | 2088-2089 | NNP | denotes | C |
| T7993 | 2089-2090 | , | denotes | , |
| T7994 | 2091-2093 | CD | denotes | 30 |
| T7995 | 2094-2095 | PRP | denotes | s |
| T7996 | 2095-2096 | -RRB- | denotes | ) |
| T7997 | 2097-2098 | RB | denotes | × |
| T7998 | 2098-2100 | CD | denotes | 40 |
| T7999 | 2100-2101 | . | denotes | . |
| T8000 | 2102-2109 | NNS | denotes | Primers |
| T8001 | 2110-2114 | VBD | denotes | used |
| T8002 | 2115-2118 | IN | denotes | for |
| T8003 | 2119-2125 | NNP | denotes | MIP-1α |
| T8004 | 2125-2126 | , | denotes | , |
| T8005 | 2127-2132 | NNP | denotes | GAPDH |
| T8006 | 2133-2136 | CC | denotes | and |
| T8007 | 2137-2141 | NNP | denotes | ACTB |
| T8008 | 2142-2145 | VBP | denotes | are |
| T8009 | 2146-2152 | VBN | denotes | listed |
| T8010 | 2153-2155 | IN | denotes | in |
| T8011 | 2156-2169 | NNP | denotes | Supplementary |
| T8012 | 2170-2174 | NNP | denotes | Data |
| T8013 | 2174-2175 | . | denotes | . |
| T8014 | 2176-2185 | JJ | denotes | Real-time |
| T8015 | 2186-2189 | NNP | denotes | PCR |
| T8016 | 2190-2192 | IN | denotes | of |
| T8017 | 2193-2197 | NNP | denotes | CSF3 |
| T8018 | 2197-2198 | , | denotes | , |
| T8019 | 2199-2202 | NNP | denotes | LTA |
| T8020 | 2202-2203 | , | denotes | , |
| T8021 | 2204-2210 | NNP | denotes | NFKBIA |
| T8022 | 2211-2214 | CC | denotes | and |
| T8023 | 2215-2219 | CD | denotes | TLR2 |
| T8024 | 2220-2224 | VBD | denotes | were |
| T8025 | 2225-2234 | VBN | denotes | performed |
| T8026 | 2235-2240 | VBG | denotes | using |
| T8027 | 2241-2244 | DT | denotes | the |
| T8028 | 2245-2251 | NNP | denotes | Custom |
| T8029 | 2252-2256 | NNP | denotes | ChIP |
| T8030 | 2257-2262 | NN | denotes | array |
| T8031 | 2263-2264 | -LRB- | denotes | ( |
| T8032 | 2264-2270 | NNP | denotes | QIAGEN |
| T8033 | 2270-2271 | -RRB- | denotes | ) |
| T8034 | 2271-2272 | . | denotes | . |
| T8035 | 2273-2276 | IN | denotes | For |
| T8036 | 2277-2281 | DT | denotes | each |
| T8037 | 2282-2288 | NN | denotes | sample |
| T8038 | 2288-2289 | , | denotes | , |
| T8039 | 2290-2296 | NNS | denotes | values |
| T8040 | 2297-2301 | VBD | denotes | were |
| T8041 | 2302-2312 | VBN | denotes | normalized |
| T8042 | 2313-2315 | TO | denotes | to |
| T8043 | 2316-2321 | NN | denotes | input |
| T8044 | 2322-2325 | NN | denotes | DNA |
| T8045 | 2326-2329 | CC | denotes | and |
| T8046 | 2330-2338 | VBD | denotes | reported |
| T8047 | 2339-2341 | IN | denotes | as |
| T8048 | 2342-2343 | NN | denotes | % |
| T8049 | 2344-2346 | IN | denotes | of |
| T8050 | 2347-2352 | NN | denotes | input |
| T8051 | 2353-2357 | IN | denotes | over |
| T8052 | 2358-2361 | DT | denotes | the |
| T8053 | 2362-2368 | NN | denotes | rabbit |
| T8054 | 2369-2372 | NNP | denotes | IgG |
| T8055 | 2373-2380 | NN | denotes | control |
| T8056 | 2380-2381 | . | denotes | . |
| T7557 | 90-91 | -RRB- | denotes | ) |
| T7558 | 92-94 | IN | denotes | at |
| T7559 | 95-98 | DT | denotes | the |
| T7560 | 99-104 | JJ | denotes | final |
| T7561 | 105-118 | NN | denotes | concentration |
| T7562 | 119-121 | IN | denotes | of |
| T7563 | 122-123 | CD | denotes | 1 |
| T7564 | 123-124 | NN | denotes | % |
| T7565 | 124-125 | . | denotes | . |
| T7566 | 126-131 | IN | denotes | After |
| T7567 | 132-134 | CD | denotes | 10 |
| T7568 | 135-138 | NN | denotes | min |
| T7569 | 138-139 | , | denotes | , |
| T7570 | 140-148 | JJ | denotes | ice-cold |
| T7571 | 149-152 | NNP | denotes | PBS |
| T7572 | 153-157 | CC | denotes | plus |
| T7573 | 158-163 | CD | denotes | 0.125 |
| T7574 | 164-165 | NNP | denotes | M |
| T7575 | 166-173 | NN | denotes | glycine |
| T7576 | 174-177 | VBD | denotes | was |
| T7577 | 178-183 | VBN | denotes | added |
| T7578 | 183-184 | , | denotes | , |
| T7579 | 185-188 | CC | denotes | and |
| T7580 | 189-195 | NNS | denotes | plates |
| T7581 | 196-200 | VBD | denotes | were |
| T7582 | 201-212 | VBN | denotes | transferred |
| T7583 | 213-215 | IN | denotes | on |
| T7584 | 216-219 | NN | denotes | ice |
| T7585 | 219-220 | , | denotes | , |
| T7586 | 221-227 | VBD | denotes | washed |
| T7587 | 228-239 | RB | denotes | extensively |
| T7588 | 240-244 | IN | denotes | with |
| T7880 | 1524-1526 | NNP | denotes | mM |
| T7881 | 1527-1531 | NNP | denotes | EDTA |
| T7882 | 1531-1532 | -RRB- | denotes | ) |
| T7883 | 1532-1533 | , | denotes | , |
| T7884 | 1534-1537 | CC | denotes | and |
| T7885 | 1538-1547 | VBN | denotes | extracted |
| T7886 | 1548-1550 | IN | denotes | in |
| T7887 | 1551-1553 | NNP | denotes | TE |
| T7888 | 1554-1560 | NN | denotes | buffer |
| T7889 | 1561-1571 | VBG | denotes | containing |
| T7890 | 1572-1573 | CD | denotes | 2 |
| T7891 | 1573-1574 | NN | denotes | % |
| T7892 | 1575-1578 | NNP | denotes | SDS |
| T7893 | 1578-1579 | . | denotes | . |
| T7894 | 1580-1587 | NN | denotes | Protein |
| T7895 | 1588-1591 | NNP | denotes | DNA |
| T7896 | 1592-1603 | NNS | denotes | cross-links |
| T7897 | 1604-1608 | VBD | denotes | were |
| T7898 | 1609-1617 | VBN | denotes | reverted |
| T7899 | 1618-1620 | IN | denotes | by |
| T7900 | 1621-1628 | NN | denotes | heating |
| T7901 | 1629-1631 | IN | denotes | at |
| T7902 | 1632-1634 | CD | denotes | 65 |
| T7903 | 1634-1635 | CD | denotes | ° |
| T7904 | 1635-1636 | NNP | denotes | C |
| T7905 | 1637-1646 | JJ | denotes | overnight |
| T7906 | 1646-1647 | . | denotes | . |
| T7907 | 1648-1651 | NNP | denotes | DNA |
| T7908 | 1652-1655 | VBD | denotes | was |
| T7909 | 1656-1663 | JJ | denotes | further |
| T7910 | 1664-1672 | VBN | denotes | purified |
| T7911 | 1673-1675 | IN | denotes | by |
| T7912 | 1676-1684 | NNP | denotes | QIAquick |
| T7913 | 1685-1688 | NNP | denotes | PCR |
| T7914 | 1689-1701 | NN | denotes | purification |
| T7945 | 1878-1885 | VBZ | denotes | eluates |
| T7946 | 1886-1891 | VBG | denotes | using |
| T7947 | 1892-1896 | NNP | denotes | SYBR |
| T7948 | 1897-1904 | NNP | denotes | GreenER |
| T7949 | 1905-1911 | NNP | denotes | Master |
| T7950 | 1912-1915 | NNP | denotes | Mix |
| T7951 | 1916-1917 | -LRB- | denotes | ( |
| T7952 | 1917-1927 | NNP | denotes | Invitrogen |
| T7953 | 1927-1928 | -RRB- | denotes | ) |
| T7954 | 1928-1929 | . | denotes | . |
| T7955 | 1930-1939 | NNS | denotes | Reactions |
| R6267 | T7546 | T7549 | amod | Chromatin,Cells |
| R6268 | T7547 | T7549 | compound | immunoprecipitation,Cells |
| R6269 | T7548 | T7549 | compound | assay,Cells |
| R6270 | T7549 | T7551 | nsubjpass | Cells,fixed |
| R6271 | T7550 | T7551 | auxpass | were,fixed |
| R6272 | T7551 | T7551 | ROOT | fixed,fixed |
| R6273 | T7552 | T7551 | prep | by,fixed |
| R6274 | T7553 | T7552 | pcomp | adding,by |
| R6275 | T7554 | T7553 | dobj | formaldehyde,adding |
| R6276 | T7555 | T7556 | punct | (,Sigma-Aldrich |
| R6277 | T7556 | T7554 | appos | Sigma-Aldrich,formaldehyde |
| R6278 | T7557 | T7556 | punct | ),Sigma-Aldrich |
| R6279 | T7558 | T7553 | prep | at,adding |
| R6280 | T7559 | T7561 | det | the,concentration |
| R6281 | T7560 | T7561 | amod | final,concentration |
| R6282 | T7561 | T7558 | pobj | concentration,at |
| R6283 | T7562 | T7561 | prep | of,concentration |
| R6284 | T7563 | T7564 | nummod | 1,% |
| R6285 | T7564 | T7562 | pobj | %,of |
| R6286 | T7565 | T7551 | punct | .,fixed |
| R6287 | T7566 | T7577 | prep | After,added |
| R6288 | T7567 | T7568 | nummod | 10,min |
| R6289 | T7568 | T7566 | pobj | min,After |
| R6290 | T7569 | T7577 | punct | ",",added |
| R6291 | T7570 | T7571 | amod | ice-cold,PBS |
| R6292 | T7571 | T7577 | nsubjpass | PBS,added |
| R6293 | T7572 | T7571 | cc | plus,PBS |
| R6294 | T7573 | T7575 | nummod | 0.125,glycine |
| R6295 | T7574 | T7575 | compound | M,glycine |
| R6296 | T7575 | T7571 | conj | glycine,PBS |
| R6297 | T7576 | T7577 | auxpass | was,added |
| R6298 | T7577 | T7577 | ROOT | added,added |
| R6299 | T7578 | T7577 | punct | ",",added |
| R6300 | T7579 | T7577 | cc | and,added |
| R6301 | T7580 | T7582 | nsubjpass | plates,transferred |
| R6302 | T7581 | T7582 | auxpass | were,transferred |
| R6303 | T7582 | T7577 | conj | transferred,added |
| R6304 | T7583 | T7582 | prep | on,transferred |
| R6305 | T7584 | T7583 | pobj | ice,on |
| R6306 | T7585 | T7582 | punct | ",",transferred |
| R6307 | T7586 | T7582 | conj | washed,transferred |
| R6308 | T7587 | T7586 | advmod | extensively,washed |
| R6309 | T7588 | T7586 | prep | with,washed |
| R6310 | T7589 | T7588 | pobj | PBS,with |
| R6311 | T7590 | T7586 | punct | ",",washed |
| R6312 | T7591 | T7586 | cc | and,washed |
| R6313 | T7592 | T7586 | conj | scraped,washed |
| R6314 | T7593 | T7577 | punct | .,added |
| R6315 | T7594 | T7598 | prep | After,were |
| R6316 | T7595 | T7594 | pobj | centrifugation,After |
| R6317 | T7596 | T7598 | punct | ",",were |
| R6318 | T7597 | T7598 | nsubj | cells,were |
| R6319 | T7598 | T7620 | ccomp | were,supplemented |
| R6320 | T7599 | T7600 | nummod | 10,min |
| R6321 | T7600 | T7598 | attr | min,were |
| R6322 | T7601 | T7600 | amod | lysed,min |
| R6323 | T7602 | T7601 | prep | in,lysed |
| R6324 | T7603 | T7604 | compound | lysis,buffer |
| R6325 | T7604 | T7602 | pobj | buffer,in |
| R6326 | T7605 | T7620 | punct | (,supplemented |
| R6327 | T7606 | T7620 | punct | 5,supplemented |
| R6328 | T7607 | T7609 | compound | mM,pH |
| R6329 | T7608 | T7609 | compound | PIPES,pH |
| R6330 | T7609 | T7620 | nsubj | pH,supplemented |
| R6331 | T7610 | T7609 | nummod | 8.0,pH |
| R6332 | T7611 | T7609 | punct | ",",pH |
| R6333 | T7612 | T7614 | nummod | 85,KCl |
| R6334 | T7613 | T7614 | compound | mM,KCl |
| R6335 | T7614 | T7609 | conj | KCl,pH |
| R6336 | T7615 | T7614 | punct | ",",KCl |
| R6337 | T7616 | T7617 | nummod | 0.5,% |
| R6338 | T7617 | T7618 | compound | %,NP-40 |
| R6339 | T7618 | T7614 | appos | NP-40,KCl |
| R6340 | T7619 | T7620 | punct | ),supplemented |
| R6341 | T7620 | T7620 | ROOT | supplemented,supplemented |
| R6342 | T7621 | T7620 | prep | with,supplemented |
| R6343 | T7622 | T7623 | nummod | 1,× |
| R6344 | T7623 | T7626 | nummod | ×,Inhibitor |
| R6345 | T7624 | T7626 | amod | Complete,Inhibitor |
| R6346 | T7625 | T7626 | compound | Protease,Inhibitor |
| R6347 | T7626 | T7621 | pobj | Inhibitor,with |
| R6348 | T7627 | T7630 | punct | (,GmbH |
| R6349 | T7628 | T7630 | compound | Roche,GmbH |
| R6350 | T7629 | T7630 | compound | Diagnostic,GmbH |
| R6351 | T7630 | T7626 | appos | GmbH,Inhibitor |
| R6352 | T7631 | T7630 | punct | ),GmbH |
| R6353 | T7632 | T7620 | punct | .,supplemented |
| R6354 | T7633 | T7635 | nsubjpass | Nuclei,pelletted |
| R6355 | T7634 | T7635 | auxpass | were,pelletted |
| R6356 | T7635 | T7635 | ROOT | pelletted,pelletted |
| R6357 | T7636 | T7635 | punct | (,pelletted |
| R6358 | T7637 | T7638 | nummod | 1000,× |
| R6359 | T7638 | T7639 | compound | ×,g |
| R6360 | T7639 | T7644 | dep | g,"," |
| R6361 | T7640 | T7642 | punct | ",",min |
| R6362 | T7641 | T7642 | nummod | 5,min |
| R6363 | T7642 | T7639 | appos | min,g |
| R6364 | T7643 | T7639 | punct | ),g |
| R6365 | T7644 | T7635 | punct | ",",pelletted |
| R6366 | T7645 | T7635 | cc | and,pelletted |
| R6367 | T7646 | T7635 | conj | resuspended,pelletted |
| R6368 | T7647 | T7646 | prep | in,resuspended |
| R6369 | T7648 | T7649 | compound | sonication,buffer |
| R6370 | T7649 | T7647 | pobj | buffer,in |
| R6371 | T7650 | T7653 | punct | (,Tris |
| R6372 | T7651 | T7653 | nummod | 50,Tris |
| R6373 | T7652 | T7653 | compound | mM,Tris |
| R6374 | T7653 | T7646 | dep | Tris,resuspended |
| R6375 | T7654 | T7655 | compound | HCl,pH |
| R6376 | T7655 | T7653 | appos | pH,Tris |
| R6377 | T7656 | T7655 | nummod | 8.0,pH |
| R6378 | T7657 | T7655 | punct | ",",pH |
| R6379 | T7658 | T7659 | nummod | 1,% |
| R6380 | T7659 | T7660 | compound | %,SDS |
| R6381 | T7660 | T7655 | appos | SDS,pH |
| R6382 | T7661 | T7660 | punct | ",",SDS |
| R6383 | T7662 | T7664 | nummod | 10,EDTA |
| R6384 | T7663 | T7664 | compound | mM,EDTA |
| R6385 | T7664 | T7660 | appos | EDTA,SDS |
| R6386 | T7665 | T7660 | punct | ),SDS |
| R6387 | T7666 | T7653 | punct | .,Tris |
| R6388 | T7667 | T7669 | nsubjpass | Chromatin,sonicated |
| R6389 | T7668 | T7669 | auxpass | was,sonicated |
| R6390 | T7669 | T7669 | ROOT | sonicated,sonicated |
| R6391 | T7670 | T7669 | advcl | using,sonicated |
| R6392 | T7671 | T7673 | compound | Bandelin,GM70 |
| R6393 | T7672 | T7673 | compound | Sonoplus,GM70 |
| R6394 | T7673 | T7670 | dobj | GM70,using |
| R6395 | T7674 | T7673 | punct | (,GM70 |
| R6396 | T7675 | T7676 | compound | Bandelin,Electronic |
| R6397 | T7676 | T7673 | appos | Electronic,GM70 |
| R6398 | T7677 | T7676 | punct | ",",Electronic |
| R6399 | T7678 | T7676 | conj | Berlin,Electronic |
| R6400 | T7679 | T7678 | punct | ",",Berlin |
| R6401 | T7680 | T7678 | conj | Germany,Berlin |
| R6402 | T7681 | T7673 | punct | ),GM70 |
| R6403 | T7682 | T7673 | punct | ",",GM70 |
| R6404 | T7683 | T7673 | amod | centrifuged,GM70 |
| R6405 | T7684 | T7696 | punct | (,was |
| R6406 | T7685 | T7686 | nummod | 14,000 |
| R6407 | T7686 | T7688 | nummod | 000,g |
| R6408 | T7687 | T7688 | compound | ×,g |
| R6409 | T7688 | T7696 | acomp | g,was |
| R6410 | T7689 | T7691 | punct | ",",min |
| R6411 | T7690 | T7691 | nummod | 15,min |
| R6412 | T7691 | T7688 | appos | min,g |
| R6413 | T7692 | T7688 | punct | ),g |
| R6414 | T7693 | T7688 | punct | ",",g |
| R6415 | T7694 | T7688 | cc | and,g |
| R6416 | T7695 | T7696 | nsubj | supernatant,was |
| R6417 | T7696 | T7696 | ROOT | was,was |
| R6418 | T7697 | T7698 | advmod | 10-fold,diluted |
| R6419 | T7698 | T7696 | acomp | diluted,was |
| R6420 | T7699 | T7698 | prep | in,diluted |
| R6421 | T7700 | T7701 | compound | dilution,buffer |
| R6422 | T7701 | T7699 | pobj | buffer,in |
| R6423 | T7702 | T7705 | punct | (,SDS |
| R6424 | T7703 | T7704 | nummod | 0.01,% |
| R6425 | T7704 | T7705 | npadvmod | %,SDS |
| R6426 | T7705 | T7696 | parataxis | SDS,was |
| R6427 | T7706 | T7705 | punct | ",",SDS |
| R6428 | T7707 | T7709 | nummod | 16.7,Tris |
| R6429 | T7708 | T7709 | compound | mM,Tris |
| R6430 | T7709 | T7705 | conj | Tris,SDS |
| R6431 | T7710 | T7711 | compound | HCl,pH |
| R6432 | T7711 | T7705 | npadvmod | pH,SDS |
| R6433 | T7712 | T7711 | nummod | 8.0,pH |
| R6434 | T7713 | T7711 | punct | ",",pH |
| R6435 | T7714 | T7715 | nummod | 1.1,% |
| R6436 | T7715 | T7717 | compound | %,X-100 |
| R6437 | T7716 | T7717 | compound | Triton,X-100 |
| R6438 | T7717 | T7711 | conj | X-100,pH |
| R6439 | T7718 | T7717 | punct | ",",X-100 |
| R6440 | T7719 | T7721 | nummod | 167,NaCl |
| R6441 | T7720 | T7721 | compound | mM,NaCl |
| R6442 | T7721 | T7717 | conj | NaCl,X-100 |
| R6443 | T7722 | T7721 | punct | ",",NaCl |
| R6444 | T7723 | T7725 | nummod | 1.2,EDTA |
| R6445 | T7724 | T7725 | compound | mM,EDTA |
| R6446 | T7725 | T7721 | appos | EDTA,NaCl |
| R6447 | T7726 | T7721 | punct | ),NaCl |
| R6448 | T7727 | T7705 | punct | .,SDS |
| R6449 | T7728 | T7730 | nsubjpass | Samples,pre-cleared |
| R6450 | T7729 | T7730 | auxpass | were,pre-cleared |
| R6451 | T7730 | T7730 | ROOT | pre-cleared,pre-cleared |
| R6452 | T7731 | T7730 | agent | by,pre-cleared |
| R6453 | T7732 | T7733 | amod | 3-h,incubation |
| R6454 | T7733 | T7731 | pobj | incubation,by |
| R6455 | T7734 | T7730 | prep | with,pre-cleared |
| R6456 | T7735 | T7736 | nummod | 20,µl |
| R6457 | T7736 | T7734 | pobj | µl,with |
| R6458 | T7737 | T7736 | prep | of,µl |
| R6459 | T7738 | T7741 | nmod | protein,beads |
| R6460 | T7739 | T7741 | nmod | G,beads |
| R6461 | T7740 | T7741 | amod | agarose,beads |
| R6462 | T7741 | T7737 | pobj | beads,of |
| R6463 | T7742 | T7741 | acl | followed,beads |
| R6464 | T7743 | T7742 | agent | by,followed |
| R6465 | T7744 | T7743 | pobj | incubation,by |
| R6466 | T7745 | T7742 | prep | with,followed |
| R6467 | T7746 | T7745 | pobj | antibodies,with |
| R6468 | T7747 | T7746 | prep | against,antibodies |
| R6469 | T7748 | T7750 | det | the,proteins |
| R6470 | T7749 | T7750 | amod | analysed,proteins |
| R6471 | T7750 | T7747 | pobj | proteins,against |
| R6472 | T7751 | T7730 | punct | .,pre-cleared |
| R6473 | T7752 | T7753 | amod | Primary,antibodies |
| R6474 | T7753 | T7754 | nsubj | antibodies,were |
| R6475 | T7754 | T7754 | ROOT | were,were |
| R6476 | T7755 | T7754 | punct | :,were |
| R6477 | T7756 | T7767 | amod | anti-p65,IgG |
| R6478 | T7757 | T7767 | punct | (,IgG |
| R6479 | T7758 | T7767 | amod | sc-372,IgG |
| R6480 | T7759 | T7758 | punct | ),sc-372 |
| R6481 | T7760 | T7758 | punct | ",",sc-372 |
| R6482 | T7761 | T7758 | conj | anti-IκBα,sc-372 |
| R6483 | T7762 | T7763 | punct | (,sc-203 |
| R6484 | T7763 | T7767 | amod | sc-203,IgG |
| R6485 | T7764 | T7763 | punct | ),sc-203 |
| R6486 | T7765 | T7763 | cc | and,sc-203 |
| R6487 | T7766 | T7763 | conj | rabbit,sc-203 |
| R6488 | T7767 | T7754 | attr | IgG,were |
| R6489 | T7768 | T7769 | punct | (,sc-2027 |
| R6490 | T7769 | T7767 | appos | sc-2027,IgG |
| R6491 | T7770 | T7769 | punct | ),sc-2027 |
| R6492 | T7771 | T7769 | prep | from,sc-2027 |
| R6493 | T7772 | T7773 | compound | Santa,Cruz |
| R6494 | T7773 | T7774 | compound | Cruz,Biotechnology |
| R6495 | T7774 | T7771 | pobj | Biotechnology,from |
| R6496 | T7775 | T7767 | punct | ;,IgG |
| R6497 | T7776 | T7777 | compound | anti-FLAG,M2 |
| R6498 | T7777 | T7767 | conj | M2,IgG |
| R6499 | T7778 | T7767 | prep | from,IgG |
| R6500 | T7779 | T7778 | pobj | Sigma,from |
| R6501 | T7780 | T7767 | conj | Aldrich,IgG |
| R6502 | T7781 | T7767 | punct | .,IgG |
| R6503 | T7782 | T7784 | nsubjpass | Immunoprecipitations,carried |
| R6504 | T7783 | T7784 | auxpass | were,carried |
| R6505 | T7784 | T7784 | ROOT | carried,carried |
| R6506 | T7785 | T7784 | prt | out,carried |
| R6507 | T7786 | T7784 | prep | at,carried |
| R6508 | T7787 | T7788 | nummod | 4,° |
| R6509 | T7788 | T7790 | nummod | °,overnight |
| R6510 | T7789 | T7790 | compound | C,overnight |
| R6511 | T7790 | T7786 | pobj | overnight,at |
| R6512 | T7791 | T7790 | cc | and,overnight |
| R6513 | T7792 | T7790 | conj | immune,overnight |
| R6514 | T7793 | T7795 | nsubjpass | complexes,collected |
| R6515 | T7794 | T7795 | auxpass | were,collected |
| R6516 | T7795 | T7784 | conj | collected,carried |
| R6517 | T7796 | T7795 | prep | with,collected |
| R6518 | T7797 | T7800 | nmod | protein,beads |
| R6519 | T7798 | T7800 | nmod | G,beads |
| R6520 | T7799 | T7800 | amod | agarose,beads |
| R6521 | T7800 | T7796 | pobj | beads,with |
| R6522 | T7801 | T7802 | punct | ",",washed |
| R6523 | T7802 | T7784 | conj | washed,carried |
| R6524 | T7803 | T7804 | nummod | five,times |
| R6525 | T7804 | T7802 | npadvmod | times,washed |
| R6526 | T7805 | T7802 | prep | with,washed |
| R6527 | T7806 | T7808 | amod | low,buffer |
| R6528 | T7807 | T7808 | compound | salt,buffer |
| R6529 | T7808 | T7805 | pobj | buffer,with |
| R6530 | T7809 | T7808 | punct | (,buffer |
| R6531 | T7810 | T7812 | nummod | 20,Tris |
| R6532 | T7811 | T7812 | compound | mM,Tris |
| R6533 | T7812 | T7808 | appos | Tris,buffer |
| R6534 | T7813 | T7814 | compound | HCl,pH |
| R6535 | T7814 | T7808 | appos | pH,buffer |
| R6536 | T7815 | T7814 | nummod | 8.0,pH |
| R6537 | T7816 | T7814 | punct | ",",pH |
| R6538 | T7817 | T7818 | nummod | 0.1,% |
| R6539 | T7818 | T7819 | npadvmod | %,SDS |
| R6540 | T7819 | T7814 | appos | SDS,pH |
| R6541 | T7820 | T7819 | punct | ",",SDS |
| R6542 | T7821 | T7822 | nummod | 1,% |
| R6543 | T7822 | T7824 | compound | %,X-100 |
| R6544 | T7823 | T7824 | compound | Triton,X-100 |
| R6545 | T7824 | T7819 | conj | X-100,SDS |
| R6546 | T7825 | T7824 | punct | ",",X-100 |
| R6547 | T7826 | T7828 | nummod | 2,EDTA |
| R6548 | T7827 | T7828 | compound | mM,EDTA |
| R6549 | T7828 | T7824 | conj | EDTA,X-100 |
| R6550 | T7829 | T7828 | punct | ",",EDTA |
| R6551 | T7830 | T7832 | nummod | 150,NaCl |
| R6552 | T7831 | T7832 | compound | mM,NaCl |
| R6553 | T7832 | T7828 | appos | NaCl,EDTA |
| R6554 | T7833 | T7828 | punct | ),EDTA |
| R6555 | T7834 | T7819 | punct | ",",SDS |
| R6556 | T7835 | T7836 | nummod | four,times |
| R6557 | T7836 | T7819 | npadvmod | times,SDS |
| R6558 | T7837 | T7819 | prep | with,SDS |
| R6559 | T7838 | T7840 | amod | high,buffer |
| R6560 | T7839 | T7840 | compound | salt,buffer |
| R6561 | T7840 | T7837 | pobj | buffer,with |
| R6562 | T7841 | T7844 | punct | (,Tris |
| R6563 | T7842 | T7844 | nummod | 20,Tris |
| R6564 | T7843 | T7844 | compound | mM,Tris |
| R6565 | T7844 | T7840 | appos | Tris,buffer |
| R6566 | T7845 | T7846 | compound | HCl,pH |
| R6567 | T7846 | T7885 | nsubj | pH,extracted |
| R6568 | T7847 | T7846 | nummod | 8.0,pH |
| R6569 | T7848 | T7846 | punct | ",",pH |
| R6570 | T7849 | T7850 | nummod | 0.1,% |
| R6571 | T7850 | T7851 | npadvmod | %,SDS |
| R6572 | T7851 | T7846 | npadvmod | SDS,pH |
| R6573 | T7852 | T7851 | punct | ",",SDS |
| R6574 | T7853 | T7854 | nummod | 1,% |
| R6575 | T7854 | T7856 | compound | %,X-100 |
| R6576 | T7855 | T7856 | compound | Triton,X-100 |
| R6577 | T7856 | T7851 | appos | X-100,SDS |
| R6578 | T7857 | T7856 | punct | ",",X-100 |
| R6579 | T7858 | T7860 | nummod | 2,EDTA |
| R6580 | T7859 | T7860 | compound | mM,EDTA |
| R6581 | T7860 | T7856 | conj | EDTA,X-100 |
| R6582 | T7861 | T7860 | punct | ",",EDTA |
| R6583 | T7862 | T7864 | nummod | 500,NaCl |
| R6584 | T7863 | T7864 | compound | mM,NaCl |
| R6585 | T7864 | T7860 | appos | NaCl,EDTA |
| R6586 | T7865 | T7860 | punct | ),EDTA |
| R6587 | T7866 | T7851 | punct | ",",SDS |
| R6588 | T7867 | T7868 | advmod | once,with |
| R6589 | T7868 | T7851 | prep | with,SDS |
| R6590 | T7869 | T7870 | compound | TE,buffer |
| R6591 | T7870 | T7868 | pobj | buffer,with |
| R6592 | T7871 | T7851 | punct | (,SDS |
| R6593 | T7872 | T7874 | nummod | 10,Tris |
| R6594 | T7873 | T7874 | compound | mM,Tris |
| R6595 | T7874 | T7851 | appos | Tris,SDS |
| R6596 | T7875 | T7876 | compound | HCl,pH |
| R6597 | T7876 | T7851 | appos | pH,SDS |
| R6598 | T7877 | T7876 | nummod | 8.0,pH |
| R6599 | T7878 | T7876 | punct | ",",pH |
| R6600 | T7879 | T7881 | nummod | 1,EDTA |
| R6601 | T7880 | T7881 | compound | mM,EDTA |
| R6602 | T7881 | T7876 | appos | EDTA,pH |
| R6603 | T7882 | T7876 | punct | ),pH |
| R6604 | T7883 | T7851 | punct | ",",SDS |
| R6605 | T7884 | T7846 | cc | and,pH |
| R6606 | T7885 | T7885 | ROOT | extracted,extracted |
| R6607 | T7886 | T7885 | prep | in,extracted |
| R6608 | T7887 | T7888 | compound | TE,buffer |
| R6609 | T7888 | T7886 | pobj | buffer,in |
| R6610 | T7889 | T7888 | acl | containing,buffer |
| R6611 | T7890 | T7891 | nummod | 2,% |
| R6612 | T7891 | T7889 | dobj | %,containing |
| R6613 | T7892 | T7889 | npadvmod | SDS,containing |
| R6614 | T7893 | T7885 | punct | .,extracted |
| R6615 | T7894 | T7894 | ROOT | Protein,Protein |
| R6616 | T7895 | T7896 | compound | DNA,cross-links |
| R6617 | T7896 | T7898 | nsubjpass | cross-links,reverted |
| R6618 | T7897 | T7898 | auxpass | were,reverted |
| R6619 | T7898 | T7898 | ROOT | reverted,reverted |
| R6620 | T7899 | T7898 | agent | by,reverted |
| R6621 | T7900 | T7899 | pobj | heating,by |
| R6622 | T7901 | T7898 | prep | at,reverted |
| R6623 | T7902 | T7904 | nummod | 65,C |
| R6624 | T7903 | T7904 | nummod | °,C |
| R6625 | T7904 | T7905 | compound | C,overnight |
| R6626 | T7905 | T7901 | pobj | overnight,at |
| R6627 | T7906 | T7898 | punct | .,reverted |
| R6628 | T7907 | T7910 | nsubjpass | DNA,purified |
| R6629 | T7908 | T7910 | auxpass | was,purified |
| R6630 | T7909 | T7910 | advmod | further,purified |
| R6631 | T7910 | T7910 | ROOT | purified,purified |
| R6650 | T7929 | T7935 | nsubjpass | enrichment,measured |
| R6651 | T7930 | T7929 | prep | in,enrichment |
| R6652 | T7931 | T7933 | amod | NF-κB,sequences |
| R6653 | T7932 | T7933 | compound | enhancer,sequences |
| R6654 | T7933 | T7930 | pobj | sequences,in |
| R6655 | T7934 | T7935 | auxpass | was,measured |
| R6656 | T7935 | T7935 | ROOT | measured,measured |
| R6657 | T7936 | T7935 | agent | by,measured |
| R6658 | T7937 | T7938 | amod | real-time,PCR |
| R6659 | T7938 | T7936 | pobj | PCR,by |
| R6660 | T7939 | T7938 | prep | of,PCR |
| R6661 | T7940 | T7941 | compound | chromatin,immunoprecipitation |
| R6662 | T7941 | T7939 | pobj | immunoprecipitation,of |
| R6663 | T7942 | T7943 | punct | (,ChIP |
| R6664 | T7943 | T7941 | appos | ChIP,immunoprecipitation |
| R6665 | T7944 | T7941 | punct | ),immunoprecipitation |
| R6666 | T7945 | T7935 | oprd | eluates,measured |
| R6667 | T7946 | T7945 | advcl | using,eluates |
| R6668 | T7947 | T7950 | compound | SYBR,Mix |
| R6669 | T7948 | T7950 | compound | GreenER,Mix |
| R6670 | T7949 | T7950 | compound | Master,Mix |
| R6671 | T7950 | T7946 | dobj | Mix,using |
| R6672 | T7951 | T7950 | punct | (,Mix |
| R6673 | T7952 | T7950 | appos | Invitrogen,Mix |
| R6674 | T7953 | T7950 | punct | ),Mix |
| R6675 | T7954 | T7935 | punct | .,measured |
| R6676 | T7955 | T7957 | nsubjpass | Reactions,carried |
| R6677 | T7956 | T7957 | auxpass | were,carried |
| R6678 | T7957 | T7957 | ROOT | carried,carried |
| R6679 | T7958 | T7957 | prt | out,carried |
| R6680 | T7959 | T7957 | prep | with,carried |
| R6681 | T7960 | T7965 | det | the,system |
| R6682 | T7961 | T7963 | compound | iCycler,Real-Time |
| R6683 | T7962 | T7963 | compound | iQ,Real-Time |
| R6684 | T7963 | T7965 | compound | Real-Time,system |
| R6685 | T7964 | T7965 | compound | detection,system |
| R6686 | T7965 | T7959 | pobj | system,with |
| R6687 | T7966 | T7965 | punct | (,system |
| R6688 | T7967 | T7968 | compound | Bio-Rad,Laboratories |
| R6689 | T7968 | T7965 | appos | Laboratories,system |
| R6690 | T7969 | T7965 | punct | ),system |
| R6691 | T7970 | T7957 | advcl | using,carried |
| R6692 | T7971 | T7973 | det | the,conditions |
| R6693 | T7972 | T7973 | amod | following,conditions |
| R6694 | T7973 | T7970 | dobj | conditions,using |
| R6695 | T7974 | T7973 | punct | :,conditions |
| R6696 | T7975 | T7976 | nummod | 95,° |
| R6697 | T7976 | T7977 | compound | °,C |
| R6698 | T7977 | T7973 | appos | C,conditions |
| R6699 | T7978 | T7977 | punct | ",",C |
| R6700 | T7979 | T7980 | nummod | 1,min |
| R6701 | T7980 | T7977 | appos | min,C |
| R6702 | T7981 | T7977 | punct | ;,C |
| R6703 | T7982 | T7985 | punct | (,C |
| R6704 | T7983 | T7984 | nummod | 94,° |
| R6705 | T7984 | T7985 | compound | °,C |
| R6706 | T7985 | T7977 | appos | C,C |
| R6707 | T7986 | T7985 | punct | ",",C |
| R6708 | T7987 | T7988 | nsubj | 10,s |
| R6709 | T7988 | T7977 | appos | s,C |
| R6710 | T7989 | T7977 | punct | ;,C |
| R6711 | T7990 | T7991 | nummod | 60,° |
| R6712 | T7991 | T7992 | compound | °,C |
| R6713 | T7992 | T7977 | conj | C,C |
| R6714 | T7993 | T7992 | punct | ",",C |
| R6715 | T7994 | T7995 | nummod | 30,s |
| R6716 | T7995 | T7992 | appos | s,C |
| R6717 | T7996 | T7992 | punct | ),C |
| R6718 | T7997 | T7998 | advmod | ×,40 |
| R6719 | T7998 | T7977 | appos | 40,C |
| R6720 | T7999 | T7957 | punct | .,carried |
| R6721 | T8000 | T8009 | nsubjpass | Primers,listed |
| R6722 | T8001 | T8000 | acl | used,Primers |
| R6723 | T8002 | T8001 | prep | for,used |
| R6724 | T8003 | T8002 | pobj | MIP-1α,for |
| R6725 | T8004 | T8003 | punct | ",",MIP-1α |
| R6726 | T8005 | T8003 | conj | GAPDH,MIP-1α |
| R6727 | T8006 | T8005 | cc | and,GAPDH |
| R6728 | T8007 | T8005 | conj | ACTB,GAPDH |
| R6729 | T8008 | T8009 | auxpass | are,listed |
| R6730 | T8009 | T8009 | ROOT | listed,listed |
| R6731 | T8010 | T8009 | prep | in,listed |
| R6732 | T8011 | T8012 | compound | Supplementary,Data |
| R6733 | T8012 | T8010 | pobj | Data,in |
| R6734 | T8013 | T8009 | punct | .,listed |
| R6735 | T8014 | T8015 | amod | Real-time,PCR |
| R6736 | T8015 | T8025 | nsubjpass | PCR,performed |
| R6737 | T8016 | T8015 | prep | of,PCR |
| R6738 | T8017 | T8016 | pobj | CSF3,of |
| R6739 | T8018 | T8017 | punct | ",",CSF3 |
| R6740 | T8019 | T8017 | conj | LTA,CSF3 |
| R6741 | T8020 | T8019 | punct | ",",LTA |
| R6742 | T8021 | T8019 | conj | NFKBIA,LTA |
| R6743 | T8022 | T8021 | cc | and,NFKBIA |
| R6744 | T8023 | T8021 | conj | TLR2,NFKBIA |
| R6745 | T8024 | T8025 | auxpass | were,performed |
| R6746 | T8025 | T8025 | ROOT | performed,performed |
| R6747 | T8026 | T8025 | advcl | using,performed |
| R6748 | T8027 | T8030 | det | the,array |
| R6749 | T8028 | T8030 | compound | Custom,array |
| R6750 | T8029 | T8030 | compound | ChIP,array |
| R6751 | T8030 | T8026 | dobj | array,using |
| R6752 | T8031 | T8030 | punct | (,array |
| R6753 | T8032 | T8030 | appos | QIAGEN,array |
| R6754 | T8033 | T8030 | punct | ),array |
| R6755 | T8034 | T8025 | punct | .,performed |
| R6756 | T8035 | T8040 | prep | For,were |
| R6757 | T8036 | T8037 | det | each,sample |
| R6758 | T8037 | T8035 | pobj | sample,For |
| R6759 | T8038 | T8040 | punct | ",",were |
| R6760 | T8039 | T8040 | nsubj | values,were |
| R6761 | T8040 | T8040 | ROOT | were,were |
| R6762 | T8041 | T8040 | acomp | normalized,were |
| R6763 | T8042 | T8041 | prep | to,normalized |
| R6764 | T8043 | T8046 | dep | input,reported |
| R6765 | T8044 | T8043 | dobj | DNA,input |
| R6766 | T8045 | T8043 | cc | and,input |
| R6767 | T8046 | T8040 | conj | reported,were |
| R6768 | T8047 | T8048 | mark | as,% |
| R6769 | T8048 | T8046 | advcl | %,reported |
| R6770 | T8049 | T8048 | prep | of,% |
| R6771 | T8050 | T8049 | pobj | input,of |
| R6772 | T8051 | T8048 | prep | over,% |
| R6773 | T8052 | T8053 | det | the,rabbit |
| R6774 | T8053 | T8051 | pobj | rabbit,over |
| R6775 | T8054 | T8055 | compound | IgG,control |
| R6776 | T8055 | T8048 | conj | control,% |
| R6777 | T8056 | T8046 | punct | .,reported |
| R6632 | T7911 | T7910 | agent | by,purified |
| R6633 | T7912 | T7915 | compound | QIAquick,kit |
| R6634 | T7913 | T7915 | compound | PCR,kit |
| R6635 | T7914 | T7915 | compound | purification,kit |
| R6636 | T7915 | T7911 | pobj | kit,by |
| R6637 | T7916 | T7915 | punct | (,kit |
| R6638 | T7917 | T7915 | appos | QIAGEN,kit |
| R6639 | T7918 | T7915 | punct | ),kit |
| R6640 | T7919 | T7910 | cc | and,purified |
| R6641 | T7920 | T7910 | conj | eluted,purified |
| R6642 | T7921 | T7920 | prep | in,eluted |
| R6643 | T7922 | T7923 | nummod | 50,µl |
| R6644 | T7923 | T7924 | npadvmod | µl,sterile |
| R6645 | T7924 | T7926 | amod | sterile,water |
| R6646 | T7925 | T7926 | compound | distilled,water |
| R6647 | T7926 | T7921 | pobj | water,in |
| R6648 | T7927 | T7910 | punct | .,purified |
| R6649 | T7928 | T7929 | amod | Specific,enrichment |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7505 | 228-239 | http://purl.obolibrary.org/obo/UBERON_2000106 | denotes | extensively |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8080 | 312-317 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | lysis |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8081 | 939-949 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
| T8082 | 989-999 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8072 | 0-9 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | Chromatin |
| T8073 | 565-574 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | Chromatin |
| T8074 | 1841-1850 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | chromatin |
| T8075 | 285-290 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T8076 | 939-949 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
| T8077 | 989-999 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
| T8078 | 939-949 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
| T8079 | 989-999 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7515 | 0-35 | Sentence | denotes | Chromatin immunoprecipitation assay |
| T7516 | 36-125 | Sentence | denotes | Cells were fixed by adding formaldehyde (Sigma-Aldrich) at the final concentration of 1%. |
| T7517 | 126-262 | Sentence | denotes | After 10 min, ice-cold PBS plus 0.125 M glycine was added, and plates were transferred on ice, washed extensively with PBS, and scraped. |
| T7518 | 263-441 | Sentence | denotes | After centrifugation, cells were 10 min lysed in lysis buffer (5 mM PIPES pH 8.0, 85 mM KCl, 0.5% NP-40) supplemented with 1× Complete Protease Inhibitor (Roche Diagnostic GmbH). |
| T7519 | 442-564 | Sentence | denotes | Nuclei were pelletted (1000 × g, 5 min), and resuspended in sonication buffer (50 mM Tris–HCl pH 8.0, 1% SDS, 10 mM EDTA). |
| T7520 | 565-829 | Sentence | denotes | Chromatin was sonicated using Bandelin Sonoplus GM70 (Bandelin Electronic, Berlin, Germany), centrifuged (14 000 × g, 15 min), and supernatant was 10-fold diluted in dilution buffer (0.01% SDS, 16.7 mM Tris–HCl pH 8.0, 1.1% Triton X-100, 167 mM NaCl, 1.2 mM EDTA). |
| T7521 | 830-980 | Sentence | denotes | Samples were pre-cleared by 3-h incubation with 20 µl of protein G agarose beads followed by incubation with antibodies against the analysed proteins. |
| T7522 | 981-1579 | Sentence | denotes | Primary antibodies were: anti-p65 (sc-372), anti-IκBα (sc-203) and rabbit IgG (sc-2027) from Santa Cruz Biotechnology; anti-FLAG M2 from Sigma–Aldrich. Immunoprecipitations were carried out at 4°C overnight and immune complexes were collected with protein G agarose beads, washed five times with low salt buffer (20 mM Tris–HCl pH 8.0, 0.1% SDS, 1% Triton X-100, 2 mM EDTA, 150 mM NaCl), four times with high salt buffer (20 mM Tris–HCl pH 8.0, 0.1% SDS, 1% Triton X-100, 2 mM EDTA, 500 mM NaCl), once with TE buffer (10 mM Tris–HCl pH 8.0, 1 mM EDTA), and extracted in TE buffer containing 2% SDS. |
| T7523 | 1580-1647 | Sentence | denotes | Protein–DNA cross-links were reverted by heating at 65°C overnight. |
| T7524 | 1648-1759 | Sentence | denotes | DNA was further purified by QIAquick PCR purification kit (QIAGEN) and eluted in 50 µl sterile distilled water. |
| T7525 | 1760-1929 | Sentence | denotes | Specific enrichment in NF-κB enhancer sequences was measured by real-time PCR of chromatin immunoprecipitation (ChIP) eluates using SYBR GreenER Master Mix (Invitrogen). |
| T7526 | 1930-2058 | Sentence | denotes | Reactions were carried out with the iCycler iQ Real-Time detection system (Bio-Rad Laboratories) using the following conditions: |
| T7527 | 2059-2101 | Sentence | denotes | 95°C, 1 min; (94°C, 10 s; 60°C, 30 s) ×40. |
| T7528 | 2102-2272 | Sentence | denotes | Primers used for MIP-1α, GAPDH and ACTB are listed in Supplementary Data. Real-time PCR of CSF3, LTA, NFKBIA and TLR2 were performed using the Custom ChIP array (QIAGEN). |
| T7529 | 2273-2381 | Sentence | denotes | For each sample, values were normalized to input DNA and reported as % of input over the rabbit IgG control. |
| T83 | 0-35 | Sentence | denotes | Chromatin immunoprecipitation assay |
| T84 | 36-125 | Sentence | denotes | Cells were fixed by adding formaldehyde (Sigma-Aldrich) at the final concentration of 1%. |
| T85 | 126-262 | Sentence | denotes | After 10 min, ice-cold PBS plus 0.125 M glycine was added, and plates were transferred on ice, washed extensively with PBS, and scraped. |
| T86 | 263-441 | Sentence | denotes | After centrifugation, cells were 10 min lysed in lysis buffer (5 mM PIPES pH 8.0, 85 mM KCl, 0.5% NP-40) supplemented with 1× Complete Protease Inhibitor (Roche Diagnostic GmbH). |
| T87 | 442-564 | Sentence | denotes | Nuclei were pelletted (1000 × g, 5 min), and resuspended in sonication buffer (50 mM Tris–HCl pH 8.0, 1% SDS, 10 mM EDTA). |
| T88 | 565-829 | Sentence | denotes | Chromatin was sonicated using Bandelin Sonoplus GM70 (Bandelin Electronic, Berlin, Germany), centrifuged (14 000 × g, 15 min), and supernatant was 10-fold diluted in dilution buffer (0.01% SDS, 16.7 mM Tris–HCl pH 8.0, 1.1% Triton X-100, 167 mM NaCl, 1.2 mM EDTA). |
| T89 | 830-980 | Sentence | denotes | Samples were pre-cleared by 3-h incubation with 20 µl of protein G agarose beads followed by incubation with antibodies against the analysed proteins. |
| T90 | 981-1132 | Sentence | denotes | Primary antibodies were: anti-p65 (sc-372), anti-IκBα (sc-203) and rabbit IgG (sc-2027) from Santa Cruz Biotechnology; anti-FLAG M2 from Sigma–Aldrich. |
| T91 | 1133-1579 | Sentence | denotes | Immunoprecipitations were carried out at 4°C overnight and immune complexes were collected with protein G agarose beads, washed five times with low salt buffer (20 mM Tris–HCl pH 8.0, 0.1% SDS, 1% Triton X-100, 2 mM EDTA, 150 mM NaCl), four times with high salt buffer (20 mM Tris–HCl pH 8.0, 0.1% SDS, 1% Triton X-100, 2 mM EDTA, 500 mM NaCl), once with TE buffer (10 mM Tris–HCl pH 8.0, 1 mM EDTA), and extracted in TE buffer containing 2% SDS. |
| T92 | 1580-1647 | Sentence | denotes | Protein–DNA cross-links were reverted by heating at 65°C overnight. |
| T93 | 1648-1759 | Sentence | denotes | DNA was further purified by QIAquick PCR purification kit (QIAGEN) and eluted in 50 µl sterile distilled water. |
| T94 | 1760-1929 | Sentence | denotes | Specific enrichment in NF-κB enhancer sequences was measured by real-time PCR of chromatin immunoprecipitation (ChIP) eluates using SYBR GreenER Master Mix (Invitrogen). |
| T95 | 1930-2058 | Sentence | denotes | Reactions were carried out with the iCycler iQ Real-Time detection system (Bio-Rad Laboratories) using the following conditions: |
| T96 | 2059-2101 | Sentence | denotes | 95°C, 1 min; (94°C, 10 s; 60°C, 30 s) ×40. |
| T97 | 2102-2175 | Sentence | denotes | Primers used for MIP-1α, GAPDH and ACTB are listed in Supplementary Data. |
| T98 | 2176-2272 | Sentence | denotes | Real-time PCR of CSF3, LTA, NFKBIA and TLR2 were performed using the Custom ChIP array (QIAGEN). |
| T99 | 2273-2381 | Sentence | denotes | For each sample, values were normalized to input DNA and reported as % of input over the rabbit IgG control. |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8128 | 887-896 | Protein | denotes | protein G |
| T8129 | 1229-1238 | Protein | denotes | protein G |
| T8130 | 2119-2125 | Protein | denotes | MIP-1α |
| T8131 | 2127-2132 | Protein | denotes | GAPDH |
| T8132 | 2137-2141 | Protein | denotes | ACTB |
| T8133 | 2193-2197 | Protein | denotes | CSF3 |
| T8134 | 2199-2202 | Protein | denotes | LTA |
| T8135 | 2204-2210 | Protein | denotes | NFKBIA |
| T8136 | 2215-2219 | Protein | denotes | TLR2 |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8137 | 0-9 | Protein | denotes | Chromatin |
| T8138 | 386-406 | Protein | denotes | 1× Complete Protease |
| T8139 | 407-416 | Negative_regulation | denotes | Inhibitor |
| T8140 | 565-574 | Protein | denotes | Chromatin |
| T8141 | 1011-1014 | Protein | denotes | p65 |
| T8142 | 1025-1043 | Protein | denotes | anti-IκBα (sc-203) |
| T8143 | 1055-1058 | Protein | denotes | IgG |
| T8144 | 1783-1797 | Protein | denotes | NF-κB enhancer |
| T8145 | 1892-1915 | Protein | denotes | SYBR GreenER Master Mix |
| T8146 | 2119-2125 | Protein | denotes | MIP-1α |
| T8147 | 2127-2132 | Protein | denotes | GAPDH |
| T8148 | 2137-2141 | Protein | denotes | ACTB |
| T8149 | 2193-2197 | Protein | denotes | CSF3 |
| T8150 | 2199-2202 | Protein | denotes | LTA |
| T8151 | 2204-2210 | Protein | denotes | NFKBIA |
| T8152 | 2215-2219 | Protein | denotes | TLR2 |
| T8153 | 2369-2372 | Protein | denotes | IgG |
| R6778 | T8138 | T8139 | themeOf | 1× Complete Protease,Inhibitor |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7496 | 887-896 | Protein | denotes | protein G |
| T7497 | 1229-1238 | Protein | denotes | protein G |
| T7498 | 2119-2125 | Protein | denotes | MIP-1α |
| T7499 | 2127-2132 | Protein | denotes | GAPDH |
| T7500 | 2137-2141 | Protein | denotes | ACTB |
| T7501 | 2193-2197 | Protein | denotes | CSF3 |
| T7502 | 2199-2202 | Protein | denotes | LTA |
| T7503 | 2204-2210 | Protein | denotes | NFKBIA |
| T7504 | 2215-2219 | Protein | denotes | TLR2 |
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7506 | 887-896 | Protein | denotes | protein G |
| T7507 | 1229-1238 | Protein | denotes | protein G |
| T7508 | 2119-2125 | Protein | denotes | MIP-1α |
| T7509 | 2127-2132 | Protein | denotes | GAPDH |
| T7510 | 2137-2141 | Protein | denotes | ACTB |
| T7511 | 2193-2197 | Protein | denotes | CSF3 |
| T7512 | 2199-2202 | Protein | denotes | LTA |
| T7513 | 2204-2210 | Protein | denotes | NFKBIA |
| T7514 | 2215-2219 | Protein | denotes | TLR2 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7530 | 337-339 | P0A7Z4 | denotes | pH |
| T7531 | 536-538 | P0A7Z4 | denotes | pH |
| T7532 | 776-778 | P0A7Z4 | denotes | pH |
| T7533 | 1011-1014 | Q04206 | denotes | p65 |
| T7534 | 1011-1014 | P21579 | denotes | p65 |
| T7535 | 1030-1034 | P25963 | denotes | IκBα |
| T7536 | 1309-1311 | P0A7Z4 | denotes | pH |
| T7537 | 1418-1420 | P0A7Z4 | denotes | pH |
| T7538 | 1514-1516 | P0A7Z4 | denotes | pH |
| T7539 | 2119-2125 | P10147 | denotes | MIP-1α |
| T7540 | 2127-2132 | P04406 | denotes | GAPDH |
| T7541 | 2137-2141 | P60709 | denotes | ACTB |
| T7542 | 2193-2197 | P09919 | denotes | CSF3 |
| T7543 | 2199-2202 | P01374 | denotes | LTA |
| T7544 | 2204-2210 | P25963 | denotes | NFKBIA |
| T7545 | 2215-2219 | O60603 | denotes | TLR2 |