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PMC:3333881 / 1184-1453 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T328 3-5 IN denotes of
T329 6-11 NN denotes NF-κB
T330 12-22 NN denotes activation
T331 23-26 IN denotes via
T332 27-35 JJ denotes physical
T333 36-47 NN denotes interaction
T334 48-50 IN denotes of
T335 51-54 NN denotes Tat
T336 55-59 IN denotes with
T337 60-65 NN denotes IκB-α
T338 66-69 CC denotes and
T339 70-73 NN denotes p65
T340 73-74 -COMMA- denotes ,
T341 75-78 CC denotes and
T342 79-82 MD denotes may
T343 83-93 VB denotes contribute
T344 94-96 TO denotes to
T345 97-104 JJ denotes further
T346 105-113 NN denotes insights
T347 114-118 IN denotes into
T348 119-122 DT denotes the
T349 123-135 NN denotes deregulation
T350 136-138 IN denotes of
T351 139-142 DT denotes the
T352 143-155 JJ denotes inflammatory
T353 156-164 NN denotes response
T354 165-167 IN denotes by
T355 168-173 NN denotes HIV-1
T1454 189-196 JJ denotes Nuclear
T1455 197-203 NN denotes factor
T1456 204-205 -LRB- denotes (
T1457 205-207 NN denotes NF
T1458 207-208 -RRB- denotes )
T1459 208-211 NN denotes -κB
T1460 212-225 NN denotes transcription
T1461 226-233 NN denotes factors
T1462 234-242 VB denotes regulate
T1463 243-246 DT denotes the
T1464 247-260 NN denotes transcription
T1465 261-263 IN denotes of
T1466 264-269 NN denotes genes
R268 T330 T328 arg2Of activation,of
R269 T330 T329 arg1Of activation,NF-κB
R270 T333 T331 arg2Of interaction,via
R271 T333 T332 arg1Of interaction,physical
R272 T333 T334 arg1Of interaction,of
R273 T333 T336 arg1Of interaction,with
R274 T335 T334 arg2Of Tat,of
R275 T337 T338 arg1Of IκB-α,and
R276 T338 T336 arg2Of and,with
R277 T339 T338 arg2Of p65,and
R278 T341 T340 arg1Of and,","
R279 T343 T341 arg2Of contribute,and
R280 T343 T342 arg2Of contribute,may
R281 T343 T344 arg1Of contribute,to
R282 T346 T344 arg2Of insights,to
R283 T346 T345 arg1Of insights,further
R284 T346 T347 arg1Of insights,into
R285 T349 T347 arg2Of deregulation,into
R286 T349 T348 arg1Of deregulation,the
R287 T349 T350 arg1Of deregulation,of
R288 T349 T354 arg1Of deregulation,by
R289 T353 T350 arg2Of response,of
R290 T353 T351 arg1Of response,the
R291 T353 T352 arg1Of response,inflammatory
R292 T355 T354 arg2Of HIV-1,by
R1275 T1457 T1456 arg2Of NF,(
R1276 T1458 T1456 arg3Of ),(
R1279 T1461 T1454 arg1Of factors,Nuclear
R1280 T1461 T1455 arg1Of factors,factor
R1281 T1461 T1456 arg1Of factors,(
R1282 T1461 T1459 arg1Of factors,-κB
R1285 T1464 T1465 arg1Of transcription,of
R1286 T1466 T1465 arg2Of genes,of
R1277 T1461 T1460 arg1Of factors,transcription
R1278 T1461 T1462 arg1Of factors,regulate
R1283 T1464 T1462 arg2Of transcription,regulate
R1284 T1464 T1463 arg1Of transcription,the

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T596 3-5 IN denotes of
T597 6-11 JJ denotes NF-κB
T598 12-22 NN denotes activation
T599 23-26 IN denotes via
T600 27-35 JJ denotes physical
T601 36-47 NN denotes interaction
T602 48-50 IN denotes of
T603 51-54 NNP denotes Tat
T604 55-59 IN denotes with
T605 60-65 NNP denotes IκB-α
T606 66-69 CC denotes and
T607 70-73 CD denotes p65
T608 73-74 , denotes ,
T609 75-78 CC denotes and
T610 79-82 MD denotes may
T611 83-93 VB denotes contribute
T612 94-96 TO denotes to
T613 97-104 JJ denotes further
T614 105-113 NNS denotes insights
T615 114-118 IN denotes into
T616 119-122 DT denotes the
T617 123-135 NN denotes deregulation
T618 136-138 IN denotes of
T619 139-142 DT denotes the
T620 143-155 JJ denotes inflammatory
T621 156-164 NN denotes response
T622 165-167 IN denotes by
T623 168-173 NNP denotes HIV-1
T624 173-174 . denotes .
T2329 189-196 NNP denotes Nuclear
T2330 197-203 NN denotes factor
T2331 204-205 -LRB- denotes (
T2332 205-207 NNP denotes NF
T2333 207-208 -RRB- denotes )
T2334 208-209 : denotes -
T2335 209-211 NN denotes κB
T2336 212-225 NN denotes transcription
T2337 226-233 NNS denotes factors
T2338 234-242 VB denotes regulate
T2339 243-246 DT denotes the
T2340 247-260 NN denotes transcription
T2341 261-263 IN denotes of
T2342 264-269 NNS denotes genes
R488 T597 T598 amod NF-κB,activation
R489 T598 T596 pobj activation,of
R491 T600 T601 amod physical,interaction
R492 T601 T599 pobj interaction,via
R493 T602 T601 prep of,interaction
R494 T603 T602 pobj Tat,of
R495 T604 T601 prep with,interaction
R496 T605 T604 pobj IκB-α,with
R497 T606 T605 cc and,IκB-α
R498 T607 T605 conj p65,IκB-α
R501 T610 T611 aux may,contribute
R503 T612 T611 prep to,contribute
R504 T613 T614 amod further,insights
R505 T614 T612 pobj insights,to
R506 T615 T614 prep into,insights
R507 T616 T617 det the,deregulation
R508 T617 T615 pobj deregulation,into
R509 T618 T617 prep of,deregulation
R510 T619 T621 det the,response
R511 T620 T621 amod inflammatory,response
R512 T621 T618 pobj response,of
R513 T622 T621 prep by,response
R514 T623 T622 pobj HIV-1,by
R2065 T2329 T2330 compound Nuclear,factor
R2066 T2330 T2337 nmod factor,factors
R2067 T2331 T2332 punct (,NF
R2068 T2332 T2330 appos NF,factor
R2069 T2333 T2332 punct ),NF
R2070 T2334 T2335 punct -,κB
R2071 T2335 T2337 amod κB,factors
R2072 T2336 T2337 compound transcription,factors
R2073 T2337 T2338 nsubj factors,regulate
R2074 T2338 T2338 ROOT regulate,regulate
R2075 T2339 T2340 det the,transcription
R2076 T2340 T2338 dobj transcription,regulate
R2077 T2341 T2340 prep of,transcription
R2078 T2342 T2341 pobj genes,of

GO-BP

Id Subject Object Predicate Lexical cue
T635 6-22 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T637 143-164 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T3164 212-225 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3165 247-260 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T10 176-188 Sentence denotes INTRODUCTION

events-check-again

Id Subject Object Predicate Lexical cue
T899 36-47 Binding denotes interaction
T900 51-54 Protein denotes Tat
T901 60-65 Protein denotes IκB-α
T902 70-73 Protein denotes p65
R629 T900 T899 themeOf Tat,interaction
R630 T901 T899 themeOf IκB-α,interaction

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T946 6-11 Protein denotes NF-κB
T947 51-54 Protein denotes Tat
T948 60-65 Protein denotes IκB-α
T949 70-73 Protein denotes p65
T950 12-22 Positive_regulation denotes activation
T951 36-47 Binding denotes interaction
T4184 209-211 Protein denotes κB
T4185 234-242 Regulation denotes regulate
R651 T946 T950 themeOf NF-κB,activation
R652 T947 T951 themeOf Tat,interaction
R653 T948 T951 themeOf IκB-α,interaction
R3776 T4184 T4185 themeOf κB,regulate

test2

Id Subject Object Predicate Lexical cue
T85 36-47 Binding denotes interaction
T86 51-54 Protein denotes Tat
T87 60-65 Protein denotes IκB-α
T88 70-73 Protein denotes p65
R40 T86 T85 themeOf Tat,interaction
R41 T87 T85 themeOf IκB-α,interaction
R42 T88 T85 themeOf p65,interaction

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T109 36-47 Binding denotes interaction
T130 51-54 Protein denotes Tat
T131 60-65 Protein denotes IκB-α
T132 70-73 Protein denotes p65
R681 T130 T109 themeOf Tat,interaction
R682 T131 T109 themeOf IκB-α,interaction

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T396 51-54 Q8UMQ1 denotes Tat
T397 51-54 P04608 denotes Tat
T398 51-54 P04610 denotes Tat
T399 51-54 P04605 denotes Tat
T400 70-73 Q04206 denotes p65
T401 70-73 P21579 denotes p65