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PMC:3333881 / 11417-12363 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7016 0-9 JJ denotes Real-time
T7017 10-13 NN denotes PCR
T7018 14-19 JJ denotes Total
T7019 20-23 NN denotes RNA
T7020 24-27 VB denotes was
T7021 28-37 VB denotes extracted
T7022 38-42 IN denotes from
T7023 43-48 NN denotes cells
T7024 49-51 IN denotes by
T7025 52-57 VB denotes using
T7026 58-61 DT denotes the
T7027 62-68 NN denotes TRIzol
T7028 69-76 NN denotes reagent
T7029 77-78 -LRB- denotes (
T7030 78-88 NN denotes Invitrogen
T7031 88-89 -RRB- denotes )
T7032 89-90 -COLON- denotes ;
T7033 91-94 NN denotes RNA
T7034 95-103 NN denotes aliquots
T7035 104-105 -LRB- denotes (
T7036 105-111 NN denotes 200 ng
T7037 111-112 -RRB- denotes )
T7038 113-117 VB denotes were
T7039 118-125 JJ denotes reverse
T7040 126-137 VB denotes transcribed
T7041 138-143 VB denotes using
T7042 144-150 NNP denotes Random
T7043 151-158 NNP denotes Examers
T7044 159-160 -LRB- denotes (
T7045 160-165 NNP denotes Roche
T7046 165-166 -RRB- denotes )
T7047 167-170 CC denotes and
T7048 171-182 NN denotes Superscript
T7049 183-186 CD denotes III
T7050 187-194 JJ denotes Reverse
T7051 195-208 NN denotes Transcriptase
T7052 209-210 -LRB- denotes (
T7053 210-220 NN denotes Invitrogen
T7054 220-221 -RRB- denotes )
T7055 221-222 -COMMA- denotes ,
T7056 223-232 VB denotes according
T7057 233-235 TO denotes to
T7058 236-239 DT denotes the
T7059 240-252 NN denotes manufacturer
T7060 252-254 POS denotes 's
T7061 255-263 NN denotes protocol
T7062 265-274 JJ denotes Real-time
T7063 275-278 NN denotes PCR
T7064 279-282 VB denotes was
T7065 283-292 VB denotes performed
T7066 293-297 IN denotes with
T7067 298-301 DT denotes the
T7068 302-304 NN denotes iQ
T7069 305-310 NNP denotes Green
T7070 311-316 NNP denotes Super
T7071 317-320 NN denotes mix
T7072 321-322 -LRB- denotes (
T7073 322-329 NNP denotes Bio-Rad
T7074 330-342 NNP denotes Laboratories
T7075 342-343 -RRB- denotes )
T7076 344-347 CC denotes and
T7077 348-355 VB denotes carried
T7078 356-359 RP denotes out
T7079 360-364 IN denotes with
T7080 365-368 DT denotes the
T7081 369-376 NN denotes iCycler
T7082 377-379 NN denotes iQ
T7083 380-389 JJ denotes Real-Time
T7084 390-399 NN denotes detection
T7085 400-406 NN denotes system
T7086 407-408 -LRB- denotes (
T7087 408-415 NNP denotes Bio-Rad
T7088 416-428 NNP denotes Laboratories
T7089 428-429 -RRB- denotes )
T7090 430-435 IN denotes under
T7091 436-439 DT denotes the
T7092 440-449 JJ denotes following
T7093 450-460 NN denotes conditions
T7094 460-461 -COLON- denotes :
T7095 462-466 NN denotes 95°C
T7096 466-467 -COMMA- denotes ,
T7097 468-473 NN denotes 1 min
T7098 473-474 -COLON- denotes ;
T7099 475-476 -LRB- denotes (
T7100 476-480 NN denotes 94°C
T7101 480-481 -COMMA- denotes ,
T7102 482-486 NN denotes 10 s
T7103 486-487 -COLON- denotes ;
T7104 488-492 NN denotes 60°C
T7105 492-493 -COMMA- denotes ,
T7106 494-498 NN denotes 30 s
T7107 498-499 -RRB- denotes )
T7108 500-503 CD denotes ×40
T7109 505-512 NN denotes Primers
T7110 513-516 IN denotes for
T7111 517-520 NN denotes Tat
T7112 521-524 CC denotes and
T7113 525-531 NN denotes MIP-1α
T7114 532-535 VB denotes are
T7115 536-542 VB denotes listed
T7116 543-545 IN denotes in
T7117 546-559 NNP denotes Supplementary
T7118 560-565 NNP denotes Data.
T7119 566-575 NNP denotes Real-time
T7120 576-579 NN denotes PCR
T7121 580-582 IN denotes of
T7122 583-587 NN denotes CSF3
T7123 587-588 -COMMA- denotes ,
T7124 589-592 NN denotes LTA
T7125 592-593 -COMMA- denotes ,
T7126 594-600 NN denotes NFKBIA
T7127 600-601 -COMMA- denotes ,
T7128 602-606 NN denotes TLR2
T7129 606-607 -COMMA- denotes ,
T7130 608-613 NN denotes GAPDH
T7131 614-617 CC denotes and
T7132 618-622 NN denotes ACTB
T7133 623-626 VB denotes was
T7134 627-636 VB denotes performed
T7135 637-642 VB denotes using
T7136 643-646 DT denotes the
T7137 647-650 NN denotes RT2
T7138 651-659 NN denotes profiler
T7139 660-663 NN denotes PCR
T7140 664-675 JJ denotes Array-Human
T7141 676-681 NN denotes NF-κB
T7142 682-691 NN denotes signaling
T7143 692-699 NN denotes pathway
T7144 700-701 -LRB- denotes (
T7145 701-707 NNP denotes QIAGEN
T7146 708-716 NNP denotes Sciences
T7147 716-717 -COMMA- denotes ,
T7148 718-720 NNP denotes MD
T7149 720-721 -COMMA- denotes ,
T7150 722-725 NNP denotes USA
T7151 725-726 -RRB- denotes )
T7152 728-737 NN denotes Reactions
T7153 738-742 VB denotes were
T7154 743-750 VB denotes carried
T7155 751-754 RP denotes out
T7156 755-757 IN denotes in
T7157 758-768 NN denotes triplicate
T7158 768-769 -COMMA- denotes ,
T7159 770-773 CC denotes and
T7160 774-778 NN denotes gene
T7161 779-789 NN denotes expression
T7162 790-796 NN denotes levels
T7163 797-801 VB denotes were
T7164 802-812 VB denotes calculated
T7165 813-821 JJ denotes relative
T7166 822-824 TO denotes to
T7167 825-830 NN denotes GAPDH
T7168 831-835 NN denotes mRNA
T7169 836-842 NN denotes levels
T7170 843-845 IN denotes as
T7171 846-856 JJ denotes endogenous
T7172 857-864 NN denotes control
T7173 866-874 JJ denotes Relative
T7174 875-885 NN denotes expression
T7175 886-889 VB denotes was
T7176 890-900 VB denotes calculated
T7177 901-903 IN denotes as
T7178 904-905 CD denotes 2
T7179 905-906 -LRB- denotes (
T7180 906-908 NN denotes Ct
T7181 909-913 NN denotes gene
T7182 914-919 IN denotes under
T7183 920-938 NN denotes investigation − Ct
T7184 939-944 NN denotes GAPDH
T7185 944-945 -RRB- denotes )
R5899 T7017 T7016 arg1Of PCR,Real-time
R5900 T7019 T7018 arg1Of RNA,Total
R5901 T7019 T7020 arg1Of RNA,was
R5902 T7019 T7021 arg2Of RNA,extracted
R5903 T7019 T7025 arg1Of RNA,using
R5904 T7021 T7020 arg2Of extracted,was
R5905 T7021 T7022 arg1Of extracted,from
R5906 T7021 T7024 arg1Of extracted,by
R5907 T7021 T7032 arg1Of extracted,;
R5908 T7023 T7022 arg2Of cells,from
R5909 T7025 T7024 arg2Of using,by
R5910 T7028 T7025 arg2Of reagent,using
R5911 T7028 T7026 arg1Of reagent,the
R5912 T7028 T7027 arg1Of reagent,TRIzol
R5913 T7028 T7029 arg1Of reagent,(
R5914 T7030 T7029 arg2Of Invitrogen,(
R5915 T7031 T7029 arg3Of ),(
R5916 T7034 T7033 arg1Of aliquots,RNA
R5917 T7034 T7035 arg1Of aliquots,(
R5918 T7034 T7038 arg1Of aliquots,were
R5919 T7036 T7035 arg2Of 200 ng,(
R5920 T7037 T7035 arg3Of ),(
R5921 T7038 T7032 arg2Of were,;
R5922 T7038 T7055 arg1Of were,","
R5923 T7038 T7056 arg1Of were,according
R5924 T7043 T7039 arg1Of Examers,reverse
R5925 T7043 T7040 arg2Of Examers,transcribed
R5926 T7043 T7041 arg1Of Examers,using
R5927 T7043 T7042 arg1Of Examers,Random
R5928 T7043 T7044 arg1Of Examers,(
R5929 T7043 T7047 arg1Of Examers,and
R5930 T7045 T7044 arg2Of Roche,(
R5931 T7046 T7044 arg3Of ),(
R5932 T7047 T7038 arg2Of and,were
R5933 T7051 T7047 arg2Of Transcriptase,and
R5934 T7051 T7048 arg1Of Transcriptase,Superscript
R5935 T7051 T7049 arg1Of Transcriptase,III
R5936 T7051 T7050 arg1Of Transcriptase,Reverse
R5937 T7051 T7052 arg1Of Transcriptase,(
R5938 T7053 T7052 arg2Of Invitrogen,(
R5939 T7054 T7052 arg3Of ),(
R5940 T7057 T7056 arg2Of to,according
R5941 T7059 T7058 arg1Of manufacturer,the
R5942 T7059 T7060 arg2Of manufacturer,'s
R5943 T7061 T7057 arg2Of protocol,to
R5944 T7061 T7060 arg1Of protocol,'s
R5945 T7063 T7062 arg1Of PCR,Real-time
R5946 T7063 T7064 arg1Of PCR,was
R5947 T7063 T7065 arg2Of PCR,performed
R5948 T7063 T7077 arg1Of PCR,carried
R5949 T7065 T7064 arg2Of performed,was
R5950 T7065 T7066 arg1Of performed,with
R5951 T7065 T7076 arg1Of performed,and
R5952 T7070 T7069 arg1Of Super,Green
R5953 T7071 T7066 arg2Of mix,with
R5954 T7071 T7067 arg1Of mix,the
R5955 T7071 T7068 arg1Of mix,iQ
R5956 T7071 T7070 arg1Of mix,Super
R5957 T7071 T7072 arg1Of mix,(
R5958 T7074 T7072 arg2Of Laboratories,(
R5959 T7074 T7073 arg1Of Laboratories,Bio-Rad
R5960 T7075 T7072 arg3Of ),(
R5961 T7076 T7094 arg1Of and,:
R5962 T7077 T7076 arg2Of carried,and
R5963 T7077 T7078 arg1Of carried,out
R5964 T7077 T7079 arg1Of carried,with
R5965 T7085 T7079 arg2Of system,with
R5966 T7085 T7080 arg1Of system,the
R5967 T7085 T7081 arg1Of system,iCycler
R5968 T7085 T7082 arg1Of system,iQ
R5969 T7085 T7083 arg1Of system,Real-Time
R5970 T7085 T7084 arg1Of system,detection
R5971 T7085 T7086 arg1Of system,(
R5972 T7085 T7090 arg1Of system,under
R5973 T7088 T7086 arg2Of Laboratories,(
R5974 T7088 T7087 arg1Of Laboratories,Bio-Rad
R5975 T7089 T7086 arg3Of ),(
R5976 T7093 T7090 arg2Of conditions,under
R5977 T7093 T7091 arg1Of conditions,the
R5978 T7093 T7092 arg1Of conditions,following
R5979 T7095 T7096 arg1Of 95°C,","
R5980 T7095 T7098 arg1Of 95°C,;
R5981 T7097 T7096 arg2Of 1 min,","
R5982 T7100 T7099 arg2Of 94°C,(
R5983 T7100 T7101 arg1Of 94°C,","
R5984 T7100 T7103 arg1Of 94°C,;
R5985 T7102 T7101 arg2Of 10 s,","
R5986 T7104 T7103 arg2Of 60°C,;
R5987 T7104 T7105 arg1Of 60°C,","
R5988 T7106 T7105 arg2Of 30 s,","
R5989 T7107 T7099 arg3Of ),(
R5990 T7108 T7098 arg2Of ×40,;
R5991 T7108 T7099 arg1Of ×40,(
R5992 T7109 T7110 arg1Of Primers,for
R5993 T7109 T7114 arg1Of Primers,are
R5994 T7109 T7115 arg2Of Primers,listed
R5995 T7111 T7112 arg1Of Tat,and
R5996 T7112 T7110 arg2Of and,for
R5997 T7113 T7112 arg2Of MIP-1α,and
R5998 T7115 T7114 arg2Of listed,are
R5999 T7115 T7116 arg1Of listed,in
R6000 T7119 T7117 arg1Of Real-time,Supplementary
R6001 T7119 T7118 arg1Of Real-time,Data.
R6002 T7120 T7116 arg2Of PCR,in
R6003 T7120 T7119 arg1Of PCR,Real-time
R6004 T7120 T7121 arg1Of PCR,of
R6005 T7122 T7121 arg2Of CSF3,of
R6006 T7124 T7125 arg1Of LTA,","
R6007 T7125 T7127 arg1Of ",",","
R6008 T7126 T7125 arg2Of NFKBIA,","
R6009 T7127 T7129 arg1Of ",",","
R6010 T7128 T7127 arg2Of TLR2,","
R6011 T7129 T7131 arg1Of ",",and
R6012 T7130 T7129 arg2Of GAPDH,","
R6013 T7131 T7133 arg1Of and,was
R6014 T7131 T7134 arg2Of and,performed
R6015 T7132 T7131 arg2Of ACTB,and
R6016 T7134 T7114 modOf performed,are
R6017 T7134 T7123 arg1Of performed,","
R6018 T7134 T7133 arg2Of performed,was
R6019 T7135 T7134 arg3Of using,performed
R6020 T7143 T7135 arg2Of pathway,using
R6021 T7143 T7136 arg1Of pathway,the
R6022 T7143 T7137 arg1Of pathway,RT2
R6023 T7143 T7138 arg1Of pathway,profiler
R6024 T7143 T7139 arg1Of pathway,PCR
R6025 T7143 T7140 arg1Of pathway,Array-Human
R6026 T7143 T7141 arg1Of pathway,NF-κB
R6027 T7143 T7142 arg1Of pathway,signaling
R6028 T7143 T7144 arg1Of pathway,(
R6029 T7146 T7144 arg2Of Sciences,(
R6030 T7146 T7145 arg1Of Sciences,QIAGEN
R6031 T7146 T7147 arg1Of Sciences,","
R6032 T7148 T7147 arg2Of MD,","
R6033 T7148 T7149 arg1Of MD,","
R6034 T7150 T7149 arg2Of USA,","
R6035 T7151 T7144 arg3Of ),(
R6036 T7152 T7153 arg1Of Reactions,were
R6037 T7152 T7154 arg2Of Reactions,carried
R6038 T7154 T7153 arg2Of carried,were
R6039 T7154 T7155 arg1Of carried,out
R6040 T7154 T7156 arg1Of carried,in
R6041 T7154 T7159 arg1Of carried,and
R6042 T7157 T7156 arg2Of triplicate,in
R6043 T7159 T7158 arg1Of and,","
R6044 T7162 T7160 arg1Of levels,gene
R6045 T7162 T7161 arg1Of levels,expression
R6046 T7162 T7163 arg1Of levels,were
R6047 T7162 T7164 arg2Of levels,calculated
R6048 T7164 T7159 arg2Of calculated,and
R6049 T7164 T7163 arg2Of calculated,were
R6050 T7164 T7166 arg1Of calculated,to
R6051 T7164 T7170 arg1Of calculated,as
R6052 T7166 T7165 arg1Of to,relative
R6053 T7169 T7166 arg2Of levels,to
R6054 T7169 T7167 arg1Of levels,GAPDH
R6055 T7169 T7168 arg1Of levels,mRNA
R6056 T7172 T7170 arg2Of control,as
R6057 T7172 T7171 arg1Of control,endogenous
R6058 T7174 T7173 arg1Of expression,Relative
R6059 T7174 T7175 arg1Of expression,was
R6060 T7174 T7176 arg2Of expression,calculated
R6061 T7176 T7175 arg2Of calculated,was
R6062 T7176 T7177 arg1Of calculated,as
R6063 T7178 T7177 arg2Of 2,as
R6064 T7178 T7179 arg1Of 2,(
R6065 T7181 T7179 arg2Of gene,(
R6066 T7181 T7180 arg1Of gene,Ct
R6067 T7181 T7182 arg1Of gene,under
R6068 T7184 T7182 arg2Of GAPDH,under
R6069 T7184 T7183 arg1Of GAPDH,investigation − Ct
R6070 T7185 T7179 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7201 0-9 JJ denotes Real-time
T7202 10-13 NNP denotes PCR
T7203 14-19 NNP denotes Total
T7204 20-23 NNP denotes RNA
T7205 24-27 VBD denotes was
T7206 28-37 VBN denotes extracted
T7207 38-42 IN denotes from
T7208 43-48 NNS denotes cells
T7209 49-51 IN denotes by
T7210 52-57 VBG denotes using
T7211 58-61 DT denotes the
T7212 62-68 NNP denotes TRIzol
T7213 69-76 NN denotes reagent
T7214 77-78 -LRB- denotes (
T7215 78-88 NNP denotes Invitrogen
T7216 88-89 -RRB- denotes )
T7217 89-90 : denotes ;
T7218 91-94 NNP denotes RNA
T7219 95-103 NNS denotes aliquots
T7220 104-105 -LRB- denotes (
T7221 105-108 CD denotes 200
T7222 109-111 NN denotes ng
T7223 111-112 -RRB- denotes )
T7224 113-117 VBD denotes were
T7225 118-125 RB denotes reverse
T7226 126-137 VBN denotes transcribed
T7227 138-143 VBG denotes using
T7228 144-150 NNP denotes Random
T7229 151-158 NNP denotes Examers
T7230 159-160 -LRB- denotes (
T7231 160-165 NNP denotes Roche
T7232 165-166 -RRB- denotes )
T7233 167-170 CC denotes and
T7234 171-182 NNP denotes Superscript
T7235 183-186 NNP denotes III
T7236 187-194 VB denotes Reverse
T7237 195-208 NNP denotes Transcriptase
T7238 209-210 -LRB- denotes (
T7239 210-220 NNP denotes Invitrogen
T7240 220-221 -RRB- denotes )
T7241 221-222 , denotes ,
T7242 223-232 VBG denotes according
T7243 233-235 TO denotes to
T7244 236-239 DT denotes the
T7245 240-252 NN denotes manufacturer
T7246 252-254 POS denotes 's
T7247 255-263 NN denotes protocol
T7248 263-264 . denotes .
T7249 265-274 JJ denotes Real-time
T7250 275-278 NNP denotes PCR
T7251 279-282 VBD denotes was
T7252 283-292 VBN denotes performed
T7253 293-297 IN denotes with
T7254 298-301 DT denotes the
T7255 302-304 NNP denotes iQ
T7256 305-310 NNP denotes Green
T7257 311-316 NNP denotes Super
T7258 317-320 NN denotes mix
T7259 321-322 -LRB- denotes (
T7260 322-329 NNP denotes Bio-Rad
T7261 330-342 NNPS denotes Laboratories
T7262 342-343 -RRB- denotes )
T7263 344-347 CC denotes and
T7264 348-355 VBD denotes carried
T7265 356-359 RP denotes out
T7266 360-364 IN denotes with
T7267 365-368 DT denotes the
T7268 369-376 NNP denotes iCycler
T7269 377-379 NNP denotes iQ
T7270 380-389 NNP denotes Real-Time
T7271 390-399 NN denotes detection
T7272 400-406 NN denotes system
T7273 407-408 -LRB- denotes (
T7274 408-415 NNP denotes Bio-Rad
T7275 416-428 NNPS denotes Laboratories
T7276 428-429 -RRB- denotes )
T7277 430-435 IN denotes under
T7278 436-439 DT denotes the
T7279 440-449 JJ denotes following
T7280 450-460 NNS denotes conditions
T7281 460-461 : denotes :
T7282 462-464 CD denotes 95
T7283 464-465 NN denotes °
T7284 465-466 NNP denotes C
T7285 466-467 , denotes ,
T7286 468-469 CD denotes 1
T7287 470-473 NN denotes min
T7288 473-474 : denotes ;
T7289 475-476 -LRB- denotes (
T7290 476-478 CD denotes 94
T7291 478-479 NN denotes °
T7292 479-480 NNP denotes C
T7293 480-481 , denotes ,
T7294 482-484 CD denotes 10
T7295 485-486 PRP denotes s
T7296 486-487 : denotes ;
T7297 488-490 CD denotes 60
T7298 490-491 NN denotes °
T7299 491-492 NNP denotes C
T7300 492-493 , denotes ,
T7301 494-496 CD denotes 30
T7302 497-498 PRP denotes s
T7303 498-499 -RRB- denotes )
T7304 500-501 RB denotes ×
T7305 501-503 CD denotes 40
T7306 503-504 . denotes .
T7307 505-512 NNS denotes Primers
T7308 513-516 IN denotes for
T7309 517-520 NNP denotes Tat
T7310 521-524 CC denotes and
T7311 525-531 NNP denotes MIP-1α
T7312 532-535 VBP denotes are
T7313 536-542 VBN denotes listed
T7314 543-545 IN denotes in
T7315 546-559 NNP denotes Supplementary
T7316 560-564 NNP denotes Data
T7317 564-565 . denotes .
T7318 566-575 JJ denotes Real-time
T7319 576-579 NNP denotes PCR
T7320 580-582 IN denotes of
T7321 583-587 NNP denotes CSF3
T7322 587-588 , denotes ,
T7323 589-592 NNP denotes LTA
T7324 592-593 , denotes ,
T7325 594-600 NNP denotes NFKBIA
T7326 600-601 , denotes ,
T7327 602-606 NNP denotes TLR2
T7328 606-607 , denotes ,
T7329 608-613 NNP denotes GAPDH
T7330 614-617 CC denotes and
T7331 618-622 NNP denotes ACTB
T7332 623-626 VBD denotes was
T7333 627-636 VBN denotes performed
T7334 637-642 VBG denotes using
T7335 643-646 DT denotes the
T7336 647-650 NNP denotes RT2
T7337 651-659 NN denotes profiler
T7338 660-663 NNP denotes PCR
T7339 664-675 NNP denotes Array-Human
T7340 676-681 NNP denotes NF-κB
T7341 682-691 VBG denotes signaling
T7342 692-699 NN denotes pathway
T7343 700-701 -LRB- denotes (
T7344 701-707 NNP denotes QIAGEN
T7345 708-716 NNPS denotes Sciences
T7346 716-717 , denotes ,
T7347 718-720 NNP denotes MD
T7348 720-721 , denotes ,
T7349 722-725 NNP denotes USA
T7350 725-726 -RRB- denotes )
T7351 726-727 . denotes .
T7352 728-737 NNS denotes Reactions
T7353 738-742 VBD denotes were
T7354 743-750 VBN denotes carried
T7355 751-754 RP denotes out
T7356 755-757 IN denotes in
T7357 758-768 NN denotes triplicate
T7358 768-769 , denotes ,
T7359 770-773 CC denotes and
T7360 774-778 NN denotes gene
T7361 779-789 NN denotes expression
T7362 790-796 NNS denotes levels
T7363 797-801 VBD denotes were
T7364 802-812 VBN denotes calculated
T7365 813-821 JJ denotes relative
T7366 822-824 TO denotes to
T7367 825-830 NNP denotes GAPDH
T7368 831-835 NNP denotes mRNA
T7369 836-842 NNS denotes levels
T7370 843-845 IN denotes as
T7371 846-856 JJ denotes endogenous
T7372 857-864 NN denotes control
T7373 864-865 . denotes .
T7374 866-874 JJ denotes Relative
T7375 875-885 NN denotes expression
T7376 886-889 VBD denotes was
T7377 890-900 VBN denotes calculated
T7378 901-903 IN denotes as
T7379 904-905 CD denotes 2
T7380 905-906 -LRB- denotes (
T7381 906-908 NN denotes Ct
T7382 909-913 NN denotes gene
T7383 914-919 IN denotes under
T7384 920-933 NN denotes investigation
T7385 934-935 NN denotes −
T7386 936-938 NNP denotes Ct
T7387 939-944 NNP denotes GAPDH
T7388 944-945 -RRB- denotes )
T7389 945-946 . denotes .
R6071 T7201 T7204 amod Real-time,RNA
R6072 T7202 T7204 compound PCR,RNA
R6073 T7203 T7204 compound Total,RNA
R6074 T7204 T7206 nsubjpass RNA,extracted
R6075 T7205 T7206 auxpass was,extracted
R6076 T7206 T7226 ccomp extracted,transcribed
R6077 T7207 T7206 prep from,extracted
R6078 T7208 T7207 pobj cells,from
R6079 T7209 T7206 prep by,extracted
R6080 T7210 T7209 pcomp using,by
R6081 T7211 T7213 det the,reagent
R6082 T7212 T7213 compound TRIzol,reagent
R6083 T7213 T7210 dobj reagent,using
R6084 T7214 T7213 punct (,reagent
R6085 T7215 T7213 appos Invitrogen,reagent
R6086 T7216 T7213 punct ),reagent
R6087 T7217 T7226 punct ;,transcribed
R6088 T7218 T7219 compound RNA,aliquots
R6089 T7219 T7226 nsubjpass aliquots,transcribed
R6090 T7220 T7219 punct (,aliquots
R6091 T7221 T7222 nummod 200,ng
R6092 T7222 T7219 appos ng,aliquots
R6093 T7223 T7219 punct ),aliquots
R6094 T7224 T7226 auxpass were,transcribed
R6095 T7225 T7226 advmod reverse,transcribed
R6096 T7226 T7226 ROOT transcribed,transcribed
R6097 T7227 T7226 advcl using,transcribed
R6098 T7228 T7229 compound Random,Examers
R6099 T7229 T7227 dobj Examers,using
R6100 T7230 T7229 punct (,Examers
R6101 T7231 T7229 appos Roche,Examers
R6102 T7232 T7229 punct ),Examers
R6103 T7233 T7229 cc and,Examers
R6104 T7234 T7235 compound Superscript,III
R6105 T7235 T7229 conj III,Examers
R6106 T7236 T7227 xcomp Reverse,using
R6107 T7237 T7236 npadvmod Transcriptase,Reverse
R6108 T7238 T7237 punct (,Transcriptase
R6109 T7239 T7237 appos Invitrogen,Transcriptase
R6110 T7240 T7237 punct ),Transcriptase
R6111 T7241 T7236 punct ",",Reverse
R6112 T7242 T7226 prep according,transcribed
R6113 T7243 T7242 prep to,according
R6114 T7244 T7245 det the,manufacturer
R6115 T7245 T7247 poss manufacturer,protocol
R6116 T7246 T7245 case 's,manufacturer
R6117 T7247 T7243 pobj protocol,to
R6118 T7248 T7226 punct .,transcribed
R6119 T7249 T7250 compound Real-time,PCR
R6120 T7250 T7252 nsubjpass PCR,performed
R6121 T7251 T7252 auxpass was,performed
R6122 T7252 T7252 ROOT performed,performed
R6123 T7253 T7252 prep with,performed
R6124 T7254 T7258 det the,mix
R6125 T7255 T7257 compound iQ,Super
R6126 T7256 T7257 compound Green,Super
R6127 T7257 T7258 compound Super,mix
R6128 T7258 T7253 pobj mix,with
R6129 T7259 T7261 punct (,Laboratories
R6161 T7291 T7292 compound °,C
R6162 T7292 T7284 appos C,C
R6163 T7293 T7292 punct ",",C
R6164 T7294 T7295 nsubj 10,s
R6165 T7295 T7292 appos s,C
R6166 T7296 T7292 punct ;,C
R6167 T7297 T7298 nummod 60,°
R6168 T7298 T7299 compound °,C
R6169 T7299 T7292 conj C,C
R6170 T7300 T7299 punct ",",C
R6171 T7301 T7302 nummod 30,s
R6172 T7302 T7299 appos s,C
R6173 T7303 T7299 punct ),C
R6174 T7304 T7305 advmod ×,40
R6175 T7305 T7292 appos 40,C
R6176 T7306 T7252 punct .,performed
R6177 T7307 T7313 nsubjpass Primers,listed
R6178 T7308 T7307 prep for,Primers
R6179 T7309 T7308 pobj Tat,for
R6180 T7310 T7309 cc and,Tat
R6181 T7311 T7309 conj MIP-1α,Tat
R6182 T7312 T7313 auxpass are,listed
R6183 T7313 T7313 ROOT listed,listed
R6184 T7314 T7313 prep in,listed
R6185 T7315 T7316 compound Supplementary,Data
R6186 T7316 T7314 pobj Data,in
R6187 T7317 T7313 punct .,listed
R6188 T7318 T7319 amod Real-time,PCR
R6189 T7319 T7333 nsubjpass PCR,performed
R6190 T7320 T7319 prep of,PCR
R6191 T7321 T7320 pobj CSF3,of
R6192 T7322 T7321 punct ",",CSF3
R6193 T7323 T7321 conj LTA,CSF3
R6194 T7324 T7323 punct ",",LTA
R6195 T7325 T7323 conj NFKBIA,LTA
R6196 T7326 T7325 punct ",",NFKBIA
R6197 T7327 T7325 conj TLR2,NFKBIA
R6198 T7328 T7327 punct ",",TLR2
R6199 T7329 T7327 conj GAPDH,TLR2
R6200 T7330 T7329 cc and,GAPDH
R6201 T7331 T7329 conj ACTB,GAPDH
R6202 T7332 T7333 auxpass was,performed
R6203 T7333 T7333 ROOT performed,performed
R6204 T7334 T7333 advcl using,performed
R6205 T7335 T7337 det the,profiler
R6206 T7336 T7337 compound RT2,profiler
R6207 T7337 T7342 nmod profiler,pathway
R6208 T7338 T7340 compound PCR,NF-κB
R6209 T7339 T7340 compound Array-Human,NF-κB
R6210 T7340 T7337 appos NF-κB,profiler
R6211 T7341 T7342 compound signaling,pathway
R6212 T7342 T7334 dobj pathway,using
R6213 T7343 T7342 punct (,pathway
R6214 T7344 T7345 compound QIAGEN,Sciences
R6215 T7345 T7342 appos Sciences,pathway
R6216 T7346 T7345 punct ",",Sciences
R6217 T7347 T7345 conj MD,Sciences
R6218 T7348 T7345 punct ",",Sciences
R6219 T7349 T7345 appos USA,Sciences
R6220 T7350 T7342 punct ),pathway
R6221 T7351 T7333 punct .,performed
R6222 T7352 T7354 nsubjpass Reactions,carried
R6223 T7353 T7354 auxpass were,carried
R6224 T7354 T7354 ROOT carried,carried
R6225 T7355 T7354 prt out,carried
R6226 T7356 T7354 prep in,carried
R6227 T7357 T7356 pobj triplicate,in
R6228 T7358 T7354 punct ",",carried
R6229 T7359 T7354 cc and,carried
R6230 T7360 T7361 compound gene,expression
R6231 T7361 T7362 compound expression,levels
R6232 T7362 T7364 nsubjpass levels,calculated
R6233 T7363 T7364 auxpass were,calculated
R6234 T7364 T7354 conj calculated,carried
R6235 T7365 T7364 oprd relative,calculated
R6236 T7366 T7365 prep to,relative
R6237 T7367 T7369 compound GAPDH,levels
R6238 T7368 T7369 compound mRNA,levels
R6239 T7369 T7366 pobj levels,to
R6240 T7370 T7365 prep as,relative
R6241 T7371 T7372 amod endogenous,control
R6242 T7372 T7370 pobj control,as
R6243 T7373 T7364 punct .,calculated
R6244 T7374 T7375 amod Relative,expression
R6245 T7375 T7377 nsubjpass expression,calculated
R6246 T7376 T7377 auxpass was,calculated
R6247 T7377 T7377 ROOT calculated,calculated
R6248 T7378 T7377 prep as,calculated
R6249 T7379 T7382 nummod 2,gene
R6250 T7380 T7382 punct (,gene
R6251 T7381 T7382 compound Ct,gene
R6252 T7382 T7378 pobj gene,as
R6253 T7383 T7382 prep under,gene
R6254 T7384 T7383 pobj investigation,under
R6255 T7385 T7387 compound −,GAPDH
R6256 T7386 T7387 compound Ct,GAPDH
R6257 T7387 T7382 appos GAPDH,gene
R6258 T7388 T7382 punct ),gene
R6259 T7389 T7377 punct .,calculated
R6130 T7260 T7261 compound Bio-Rad,Laboratories
R6131 T7261 T7258 appos Laboratories,mix
R6132 T7262 T7252 punct ),performed
R6133 T7263 T7252 cc and,performed
R6134 T7264 T7252 conj carried,performed
R6135 T7265 T7264 prt out,carried
R6136 T7266 T7264 prep with,carried
R6137 T7267 T7272 det the,system
R6138 T7268 T7270 compound iCycler,Real-Time
R6139 T7269 T7270 compound iQ,Real-Time
R6140 T7270 T7272 compound Real-Time,system
R6141 T7271 T7272 compound detection,system
R6142 T7272 T7266 pobj system,with
R6143 T7273 T7272 punct (,system
R6144 T7274 T7275 compound Bio-Rad,Laboratories
R6145 T7275 T7272 appos Laboratories,system
R6146 T7276 T7272 punct ),system
R6147 T7277 T7264 prep under,carried
R6148 T7278 T7280 det the,conditions
R6149 T7279 T7280 amod following,conditions
R6150 T7280 T7277 pobj conditions,under
R6151 T7281 T7280 punct :,conditions
R6152 T7282 T7283 nummod 95,°
R6153 T7283 T7284 compound °,C
R6154 T7284 T7280 appos C,conditions
R6155 T7285 T7284 punct ",",C
R6156 T7286 T7287 nummod 1,min
R6157 T7287 T7284 appos min,C
R6158 T7288 T7284 punct ;,C
R6159 T7289 T7284 punct (,C
R6160 T7290 T7291 nummod 94,°

GO-BP

Id Subject Object Predicate Lexical cue
T7397 195-208 http://purl.obolibrary.org/obo/GO_0003899 denotes Transcriptase
T7398 195-208 http://purl.obolibrary.org/obo/GO_0003968 denotes Transcriptase
T7399 195-208 http://purl.obolibrary.org/obo/GO_0034062 denotes Transcriptase
T7400 682-691 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T7401 682-699 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathway
T7402 774-789 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

GO-MF

Id Subject Object Predicate Lexical cue
T7403 195-208 http://purl.obolibrary.org/obo/GO_0003899 denotes Transcriptase
T7404 195-208 http://purl.obolibrary.org/obo/GO_0003968 denotes Transcriptase
T7405 195-208 http://purl.obolibrary.org/obo/GO_0034062 denotes Transcriptase

GO-CC

Id Subject Object Predicate Lexical cue
T7406 43-48 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7009 0-13 Sentence denotes Real-time PCR
T7010 14-264 Sentence denotes Total RNA was extracted from cells by using the TRIzol reagent (Invitrogen); RNA aliquots (200 ng) were reverse transcribed using Random Examers (Roche) and Superscript III Reverse Transcriptase (Invitrogen), according to the manufacturer's protocol.
T7011 265-461 Sentence denotes Real-time PCR was performed with the iQ Green Super mix (Bio-Rad Laboratories) and carried out with the iCycler iQ Real-Time detection system (Bio-Rad Laboratories) under the following conditions:
T7012 462-504 Sentence denotes 95°C, 1 min; (94°C, 10 s; 60°C, 30 s) ×40.
T7013 505-727 Sentence denotes Primers for Tat and MIP-1α are listed in Supplementary Data. Real-time PCR of CSF3, LTA, NFKBIA, TLR2, GAPDH and ACTB was performed using the RT2 profiler PCR Array-Human NF-κB signaling pathway (QIAGEN Sciences, MD, USA).
T7014 728-865 Sentence denotes Reactions were carried out in triplicate, and gene expression levels were calculated relative to GAPDH mRNA levels as endogenous control.
T7015 866-946 Sentence denotes Relative expression was calculated as 2(Ct gene under investigation − Ct GAPDH).
T75 0-13 Sentence denotes Real-time PCR
T76 14-264 Sentence denotes Total RNA was extracted from cells by using the TRIzol reagent (Invitrogen); RNA aliquots (200 ng) were reverse transcribed using Random Examers (Roche) and Superscript III Reverse Transcriptase (Invitrogen), according to the manufacturer's protocol.
T77 265-461 Sentence denotes Real-time PCR was performed with the iQ Green Super mix (Bio-Rad Laboratories) and carried out with the iCycler iQ Real-Time detection system (Bio-Rad Laboratories) under the following conditions:
T78 462-504 Sentence denotes 95°C, 1 min; (94°C, 10 s; 60°C, 30 s) ×40.
T79 505-565 Sentence denotes Primers for Tat and MIP-1α are listed in Supplementary Data.
T80 566-727 Sentence denotes Real-time PCR of CSF3, LTA, NFKBIA, TLR2, GAPDH and ACTB was performed using the RT2 profiler PCR Array-Human NF-κB signaling pathway (QIAGEN Sciences, MD, USA).
T81 728-865 Sentence denotes Reactions were carried out in triplicate, and gene expression levels were calculated relative to GAPDH mRNA levels as endogenous control.
T82 866-946 Sentence denotes Relative expression was calculated as 2(Ct gene under investigation − Ct GAPDH).

events-check-again

Id Subject Object Predicate Lexical cue
T7461 517-520 Protein denotes Tat
T7462 525-531 Protein denotes MIP-1α
T7463 583-587 Protein denotes CSF3
T7464 589-592 Protein denotes LTA
T7465 594-600 Protein denotes NFKBIA
T7466 602-606 Protein denotes TLR2
T7467 608-613 Protein denotes GAPDH
T7468 618-622 Protein denotes ACTB
T7469 825-830 Protein denotes GAPDH
T7470 836-842 Transcription denotes levels
T7471 939-944 Protein denotes GAPDH
R6264 T7469 T7470 themeOf GAPDH,levels

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7472 171-208 Protein denotes Superscript III Reverse Transcriptase
T7473 517-520 Protein denotes Tat
T7474 525-531 Protein denotes MIP-1α
T7475 583-587 Protein denotes CSF3
T7476 589-592 Protein denotes LTA
T7477 594-600 Protein denotes NFKBIA
T7478 602-606 Protein denotes TLR2
T7479 608-613 Protein denotes GAPDH
T7480 618-622 Protein denotes ACTB
T7481 647-663 Protein denotes RT2 profiler PCR
T7482 676-681 Protein denotes NF-κB
T7483 825-835 Protein denotes GAPDH mRNA
T7484 779-789 Gene_expression denotes expression
T7485 936-944 Protein denotes Ct GAPDH
T7486 875-885 Gene_expression denotes expression
R6265 T7483 T7484 themeOf GAPDH mRNA,expression
R6266 T7485 T7486 themeOf Ct GAPDH,expression

test2

Id Subject Object Predicate Lexical cue
T6988 517-520 Protein denotes Tat
T6989 525-531 Protein denotes MIP-1α
T6990 583-587 Protein denotes CSF3
T6991 589-592 Protein denotes LTA
T6992 594-600 Protein denotes NFKBIA
T6993 602-606 Protein denotes TLR2
T6994 608-613 Protein denotes GAPDH
T6995 618-622 Protein denotes ACTB
T6996 825-830 Protein denotes GAPDH
T6997 939-944 Protein denotes GAPDH

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T6998 517-520 Protein denotes Tat
T6999 525-531 Protein denotes MIP-1α
T7000 583-587 Protein denotes CSF3
T7001 589-592 Protein denotes LTA
T7002 594-600 Protein denotes NFKBIA
T7003 602-606 Protein denotes TLR2
T7004 608-613 Protein denotes GAPDH
T7005 618-622 Protein denotes ACTB
T7006 825-830 Protein denotes GAPDH
T7007 836-842 Transcription denotes levels
T7008 939-944 Protein denotes GAPDH
R5898 T7006 T7007 themeOf GAPDH,levels

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7186 517-520 P04610 denotes Tat
T7187 517-520 Q8UMQ1 denotes Tat
T7188 517-520 P04605 denotes Tat
T7189 517-520 P04608 denotes Tat
T7190 525-531 P10147 denotes MIP-1α
T7191 583-587 P09919 denotes CSF3
T7192 589-592 P01374 denotes LTA
T7193 594-600 P25963 denotes NFKBIA
T7194 602-606 O60603 denotes TLR2
T7195 608-613 P04406 denotes GAPDH
T7196 618-622 P60709 denotes ACTB
T7197 813-821 Q04864 denotes relative
T7198 825-830 P04406 denotes GAPDH
T7199 866-874 Q04864 denotes Relative
T7200 939-944 P04406 denotes GAPDH