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PMC:3333881 / 1133-1579 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-18927578-77584393 380-381 18927578 denotes 1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T320 6-9 CC denotes and
T321 10-14 NN denotes TLR2
T322 16-19 PRP-DOLLAR- denotes Our
T323 20-27 NN denotes results
T324 28-35 VB denotes support
T325 36-37 DT denotes a
T326 38-43 JJ denotes novel
T327 44-53 NN denotes mechanism
T328 54-56 IN denotes of
T329 57-62 NN denotes NF-κB
T330 63-73 NN denotes activation
T331 74-77 IN denotes via
T332 78-86 JJ denotes physical
T333 87-98 NN denotes interaction
T334 99-101 IN denotes of
T335 102-105 NN denotes Tat
T336 106-110 IN denotes with
T337 111-116 NN denotes IκB-α
T338 117-120 CC denotes and
T339 121-124 NN denotes p65
T340 124-125 -COMMA- denotes ,
T341 126-129 CC denotes and
T342 130-133 MD denotes may
T343 134-144 VB denotes contribute
T344 145-147 TO denotes to
T345 148-155 JJ denotes further
T346 156-164 NN denotes insights
T347 165-169 IN denotes into
T348 170-173 DT denotes the
T349 174-186 NN denotes deregulation
T350 187-189 IN denotes of
T351 190-193 DT denotes the
T352 194-206 JJ denotes inflammatory
T353 207-215 NN denotes response
T354 216-218 IN denotes by
T355 219-224 NN denotes HIV-1
T1454 240-247 JJ denotes Nuclear
T1455 248-254 NN denotes factor
T1456 255-256 -LRB- denotes (
T1457 256-258 NN denotes NF
T1458 258-259 -RRB- denotes )
T1459 259-262 NN denotes -κB
T1460 263-276 NN denotes transcription
T1461 277-284 NN denotes factors
T1462 285-293 VB denotes regulate
T1463 294-297 DT denotes the
T1464 298-311 NN denotes transcription
T1465 312-314 IN denotes of
T1466 315-320 NN denotes genes
T1467 321-325 WDT denotes that
T1468 326-329 VB denotes are
T1469 330-338 VB denotes involved
T1470 339-341 IN denotes in
T1471 342-345 DT denotes the
T1472 346-352 JJ denotes immune
T1473 353-356 CC denotes and
T1474 357-369 JJ denotes inflammatory
T1475 370-378 NN denotes response
T1476 379-380 -LRB- denotes (
T1477 380-381 CD denotes 1
T1478 381-382 -RRB- denotes )
T1479 384-387 DT denotes The
T1480 388-393 NN denotes NF-κB
T1481 394-400 NN denotes family
T1482 401-409 VB denotes includes
T1483 410-418 NN denotes RelA/p65
T1484 418-419 -COMMA- denotes ,
T1485 420-425 NN denotes c-Rel
T1486 425-426 -COMMA- denotes ,
T1487 427-431 NN denotes RelB
T1488 431-432 -COMMA- denotes ,
T1489 433-436 NN denotes p50
T1490 437-440 CC denotes and
T1491 441-444 NN denotes p52
R257 T321 T320 arg2Of TLR2,and
R258 T323 T322 arg1Of results,Our
R259 T323 T324 arg1Of results,support
R260 T323 T342 arg1Of results,may
R261 T323 T343 arg1Of results,contribute
R262 T324 T341 arg1Of support,and
R263 T327 T324 arg2Of mechanism,support
R264 T327 T325 arg1Of mechanism,a
R265 T327 T326 arg1Of mechanism,novel
R266 T327 T328 arg1Of mechanism,of
R267 T327 T331 arg1Of mechanism,via
R268 T330 T328 arg2Of activation,of
R269 T330 T329 arg1Of activation,NF-κB
R270 T333 T331 arg2Of interaction,via
R271 T333 T332 arg1Of interaction,physical
R272 T333 T334 arg1Of interaction,of
R273 T333 T336 arg1Of interaction,with
R274 T335 T334 arg2Of Tat,of
R275 T337 T338 arg1Of IκB-α,and
R276 T338 T336 arg2Of and,with
R277 T339 T338 arg2Of p65,and
R278 T341 T340 arg1Of and,","
R279 T343 T341 arg2Of contribute,and
R280 T343 T342 arg2Of contribute,may
R281 T343 T344 arg1Of contribute,to
R282 T346 T344 arg2Of insights,to
R283 T346 T345 arg1Of insights,further
R284 T346 T347 arg1Of insights,into
R285 T349 T347 arg2Of deregulation,into
R286 T349 T348 arg1Of deregulation,the
R287 T349 T350 arg1Of deregulation,of
R288 T349 T354 arg1Of deregulation,by
R289 T353 T350 arg2Of response,of
R290 T353 T351 arg1Of response,the
R291 T353 T352 arg1Of response,inflammatory
R292 T355 T354 arg2Of HIV-1,by
R1275 T1457 T1456 arg2Of NF,(
R1276 T1458 T1456 arg3Of ),(
R1279 T1461 T1454 arg1Of factors,Nuclear
R1280 T1461 T1455 arg1Of factors,factor
R1281 T1461 T1456 arg1Of factors,(
R1282 T1461 T1459 arg1Of factors,-κB
R1285 T1464 T1465 arg1Of transcription,of
R1286 T1466 T1465 arg2Of genes,of
R1287 T1466 T1467 arg1Of genes,that
R1288 T1466 T1468 arg1Of genes,are
R1289 T1466 T1469 arg2Of genes,involved
R1290 T1469 T1468 arg2Of involved,are
R1291 T1469 T1470 arg1Of involved,in
R1292 T1472 T1473 arg1Of immune,and
R1293 T1474 T1473 arg2Of inflammatory,and
R1294 T1475 T1470 arg2Of response,in
R1295 T1475 T1471 arg1Of response,the
R1296 T1475 T1472 arg1Of response,immune
R1297 T1475 T1474 arg1Of response,inflammatory
R1298 T1475 T1476 arg1Of response,(
R1299 T1477 T1476 arg2Of 1,(
R1300 T1478 T1476 arg3Of ),(
R1301 T1481 T1479 arg1Of family,The
R1302 T1481 T1480 arg1Of family,NF-κB
R1303 T1481 T1482 arg1Of family,includes
R1304 T1483 T1484 arg1Of RelA/p65,","
R1305 T1484 T1486 arg1Of ",",","
R1306 T1485 T1484 arg2Of c-Rel,","
R1307 T1486 T1488 arg1Of ",",","
R1308 T1487 T1486 arg2Of RelB,","
R1309 T1488 T1482 arg2Of ",",includes
R1312 T1489 T1490 arg1Of p50,and
R1313 T1490 T1488 arg2Of and,","
R1314 T1491 T1490 arg2Of p52,and
R1277 T1461 T1460 arg1Of factors,transcription
R1278 T1461 T1462 arg1Of factors,regulate
R1283 T1464 T1462 arg2Of transcription,regulate
R1284 T1464 T1463 arg1Of transcription,the

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T587 6-9 CC denotes and
T588 10-14 NNP denotes TLR2
T589 14-15 . denotes .
T590 16-19 PRP$ denotes Our
T591 20-27 NNS denotes results
T592 28-35 VBP denotes support
T593 36-37 DT denotes a
T594 38-43 NN denotes novel
T595 44-53 NN denotes mechanism
T596 54-56 IN denotes of
T597 57-62 JJ denotes NF-κB
T598 63-73 NN denotes activation
T599 74-77 IN denotes via
T600 78-86 JJ denotes physical
T601 87-98 NN denotes interaction
T602 99-101 IN denotes of
T603 102-105 NNP denotes Tat
T604 106-110 IN denotes with
T605 111-116 NNP denotes IκB-α
T606 117-120 CC denotes and
T607 121-124 CD denotes p65
T608 124-125 , denotes ,
T609 126-129 CC denotes and
T610 130-133 MD denotes may
T611 134-144 VB denotes contribute
T612 145-147 TO denotes to
T613 148-155 JJ denotes further
T614 156-164 NNS denotes insights
T615 165-169 IN denotes into
T616 170-173 DT denotes the
T617 174-186 NN denotes deregulation
T618 187-189 IN denotes of
T619 190-193 DT denotes the
T620 194-206 JJ denotes inflammatory
T621 207-215 NN denotes response
T622 216-218 IN denotes by
T623 219-224 NNP denotes HIV-1
T624 224-225 . denotes .
T2329 240-247 NNP denotes Nuclear
T2330 248-254 NN denotes factor
T2331 255-256 -LRB- denotes (
T2332 256-258 NNP denotes NF
T2333 258-259 -RRB- denotes )
T2334 259-260 : denotes -
T2335 260-262 NN denotes κB
T2336 263-276 NN denotes transcription
T2337 277-284 NNS denotes factors
T2338 285-293 VB denotes regulate
T2339 294-297 DT denotes the
T2340 298-311 NN denotes transcription
T2341 312-314 IN denotes of
T2342 315-320 NNS denotes genes
T2343 321-325 WDT denotes that
T2344 326-329 VBP denotes are
T2345 330-338 VBN denotes involved
T2346 339-341 IN denotes in
T2347 342-345 DT denotes the
T2348 346-352 JJ denotes immune
T2349 353-356 CC denotes and
T2350 357-369 JJ denotes inflammatory
T2351 370-378 NN denotes response
T2352 379-380 -LRB- denotes (
T2353 380-381 CD denotes 1
T2354 381-382 -RRB- denotes )
T2355 382-383 . denotes .
T2356 384-387 DT denotes The
T2357 388-393 NNP denotes NF-κB
T2358 394-400 NN denotes family
T2359 401-409 VBZ denotes includes
T2360 410-418 NNS denotes RelA/p65
T2361 418-419 , denotes ,
T2362 420-425 NNP denotes c-Rel
T2363 425-426 , denotes ,
T2364 427-431 NNP denotes RelB
T2365 431-432 , denotes ,
T2366 433-436 CD denotes p50
T2367 437-440 CC denotes and
T2368 441-444 CD denotes p52
R481 T590 T591 poss Our,results
R482 T591 T592 nsubj results,support
R483 T592 T592 ROOT support,support
R484 T593 T595 det a,mechanism
R485 T594 T595 amod novel,mechanism
R486 T595 T592 dobj mechanism,support
R487 T596 T595 prep of,mechanism
R488 T597 T598 amod NF-κB,activation
R489 T598 T596 pobj activation,of
R490 T599 T592 prep via,support
R491 T600 T601 amod physical,interaction
R492 T601 T599 pobj interaction,via
R493 T602 T601 prep of,interaction
R494 T603 T602 pobj Tat,of
R495 T604 T601 prep with,interaction
R496 T605 T604 pobj IκB-α,with
R497 T606 T605 cc and,IκB-α
R498 T607 T605 conj p65,IκB-α
R499 T608 T592 punct ",",support
R500 T609 T592 cc and,support
R501 T610 T611 aux may,contribute
R502 T611 T592 conj contribute,support
R503 T612 T611 prep to,contribute
R504 T613 T614 amod further,insights
R505 T614 T612 pobj insights,to
R506 T615 T614 prep into,insights
R507 T616 T617 det the,deregulation
R508 T617 T615 pobj deregulation,into
R509 T618 T617 prep of,deregulation
R510 T619 T621 det the,response
R511 T620 T621 amod inflammatory,response
R512 T621 T618 pobj response,of
R513 T622 T621 prep by,response
R514 T623 T622 pobj HIV-1,by
R515 T624 T592 punct .,support
R2065 T2329 T2330 compound Nuclear,factor
R2066 T2330 T2337 nmod factor,factors
R2067 T2331 T2332 punct (,NF
R2068 T2332 T2330 appos NF,factor
R2069 T2333 T2332 punct ),NF
R2070 T2334 T2335 punct -,κB
R2071 T2335 T2337 amod κB,factors
R2072 T2336 T2337 compound transcription,factors
R2073 T2337 T2338 nsubj factors,regulate
R2074 T2338 T2338 ROOT regulate,regulate
R2075 T2339 T2340 det the,transcription
R2076 T2340 T2338 dobj transcription,regulate
R2077 T2341 T2340 prep of,transcription
R2078 T2342 T2341 pobj genes,of
R2079 T2343 T2345 nsubjpass that,involved
R2080 T2344 T2345 auxpass are,involved
R2082 T2345 T2342 relcl involved,genes
R2083 T2346 T2345 prep in,involved
R2085 T2347 T2351 det the,response
R2086 T2348 T2351 amod immune,response
R2089 T2349 T2348 cc and,immune
R2091 T2350 T2348 conj inflammatory,immune
R2092 T2351 T2346 pobj response,in
R2093 T2352 T2353 punct (,1
R2094 T2353 T2342 appos 1,genes
R2096 T2354 T2353 punct ),1
R2097 T2355 T2338 punct .,regulate
R2098 T2356 T2358 det The,family
R2099 T2357 T2358 compound NF-κB,family
R2100 T2358 T2359 nsubj family,includes
R2101 T2359 T2359 ROOT includes,includes
R2103 T2360 T2359 dobj RelA/p65,includes
R2104 T2361 T2360 punct ",",RelA/p65
R2105 T2362 T2360 conj c-Rel,RelA/p65
R2106 T2363 T2362 punct ",",c-Rel
R2108 T2364 T2362 conj RelB,c-Rel
R2109 T2365 T2364 punct ",",RelB
R2110 T2366 T2364 conj p50,RelB
R2112 T2367 T2366 cc and,p50
R2113 T2368 T2366 conj p52,p50

GO-BP

Id Subject Object Predicate Lexical cue
T635 57-73 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T637 194-215 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T3164 263-276 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3165 298-311 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3170 357-378 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response

sentences

Id Subject Object Predicate Lexical cue
T96 16-225 Sentence denotes Our results support a novel mechanism of NF-κB activation via physical interaction of Tat with IκB-α and p65, and may contribute to further insights into the deregulation of the inflammatory response by HIV-1.
T1429 240-383 Sentence denotes Nuclear factor (NF)-κB transcription factors regulate the transcription of genes that are involved in the immune and inflammatory response (1).
T9 16-225 Sentence denotes Our results support a novel mechanism of NF-κB activation via physical interaction of Tat with IκB-α and p65, and may contribute to further insights into the deregulation of the inflammatory response by HIV-1.
T10 227-239 Sentence denotes INTRODUCTION
T11 240-383 Sentence denotes Nuclear factor (NF)-κB transcription factors regulate the transcription of genes that are involved in the immune and inflammatory response (1).

events-check-again

Id Subject Object Predicate Lexical cue
T898 10-14 Protein denotes TLR2
T899 87-98 Binding denotes interaction
T900 102-105 Protein denotes Tat
T901 111-116 Protein denotes IκB-α
T902 121-124 Protein denotes p65
T3998 410-414 Protein denotes RelA
T3999 415-418 Protein denotes p65
T4000 420-425 Protein denotes c-Rel
T4001 427-431 Protein denotes RelB
T4002 433-436 Protein denotes p50
T4003 441-444 Protein denotes p52
R629 T900 T899 themeOf Tat,interaction
R630 T901 T899 themeOf IκB-α,interaction
R3639 T3999 T3998 equivalentTo p65,RelA

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T941 10-14 Protein denotes TLR2
T946 57-62 Protein denotes NF-κB
T947 102-105 Protein denotes Tat
T948 111-116 Protein denotes IκB-α
T949 121-124 Protein denotes p65
T950 63-73 Positive_regulation denotes activation
T951 87-98 Binding denotes interaction
T4184 260-262 Protein denotes κB
T4185 285-293 Regulation denotes regulate
T4186 388-400 Protein denotes NF-κB family
T4187 410-414 Protein denotes RelA
T4188 415-418 Protein denotes p65
T4189 420-425 Protein denotes c-Rel
T4190 427-431 Protein denotes RelB
T4191 433-436 Protein denotes p50
T4192 441-444 Protein denotes p52
R651 T946 T950 themeOf NF-κB,activation
R652 T947 T951 themeOf Tat,interaction
R653 T948 T951 themeOf IκB-α,interaction
R3776 T4184 T4185 themeOf κB,regulate

test2

Id Subject Object Predicate Lexical cue
T84 10-14 Protein denotes TLR2
T85 87-98 Binding denotes interaction
T86 102-105 Protein denotes Tat
T87 111-116 Protein denotes IκB-α
T88 121-124 Protein denotes p65
T1138 410-414 Protein denotes RelA
T1139 415-418 Protein denotes p65
T1140 420-425 Protein denotes c-Rel
T1141 427-431 Protein denotes RelB
T1142 433-436 Protein denotes p50
T1143 441-444 Protein denotes p52
R40 T86 T85 themeOf Tat,interaction
R41 T87 T85 themeOf IκB-α,interaction
R42 T88 T85 themeOf p65,interaction
R976 T1139 T1138 equivalentTo p65,RelA

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T109 87-98 Binding denotes interaction
T1243 410-414 Protein denotes RelA
T1244 415-418 Protein denotes p65
T1245 420-425 Protein denotes c-Rel
T1246 427-431 Protein denotes RelB
T1247 433-436 Protein denotes p50
T1248 441-444 Protein denotes p52
T129 10-14 Protein denotes TLR2
T130 102-105 Protein denotes Tat
T131 111-116 Protein denotes IκB-α
T132 121-124 Protein denotes p65
R681 T130 T109 themeOf Tat,interaction
R682 T131 T109 themeOf IκB-α,interaction
R1064 T1244 T1243 equivalentTo p65,RelA

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T395 10-14 O60603 denotes TLR2
T396 102-105 Q8UMQ1 denotes Tat
T397 102-105 P04608 denotes Tat
T398 102-105 P04610 denotes Tat
T399 102-105 P04605 denotes Tat
T400 121-124 Q04206 denotes p65
T401 121-124 P21579 denotes p65
T2244 410-414 Q04206-3 denotes RelA
T2245 410-414 Q04206 denotes RelA
T2246 415-418 Q04206 denotes p65
T2247 415-418 P21579 denotes p65
T2248 420-425 Q04864 denotes c-Rel
T2249 422-425 Q04864 denotes Rel
T2250 427-431 Q01201 denotes RelB
T2251 433-436 P19838 denotes p50
T2252 441-444 Q00653 denotes p52