PMC:3333881 / 10933-11182 JSONTXT

Annnotations TAB JSON ListView MergeView

    2_test

    {"project":"2_test","denotations":[{"id":"22187158-17942396-77584443","span":{"begin":200,"end":202},"obj":"17942396"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T6718","span":{"begin":0,"end":2},"obj":"FW"},{"id":"T6719","span":{"begin":3,"end":8},"obj":"FW"},{"id":"T6720","span":{"begin":9,"end":20},"obj":"NN"},{"id":"T6721","span":{"begin":21,"end":29},"obj":"NN"},{"id":"T6722","span":{"begin":29,"end":30},"obj":"-COMMA-"},{"id":"T6723","span":{"begin":31,"end":34},"obj":"NN"},{"id":"T6724","span":{"begin":35,"end":38},"obj":"CC"},{"id":"T6725","span":{"begin":39,"end":42},"obj":"NN"},{"id":"T6726","span":{"begin":43,"end":47},"obj":"VB"},{"id":"T6727","span":{"begin":48,"end":57},"obj":"VB"},{"id":"T6728","span":{"begin":58,"end":63},"obj":"IN"},{"id":"T6729","span":{"begin":64,"end":67},"obj":"DT"},{"id":"T6730","span":{"begin":68,"end":70},"obj":"NN"},{"id":"T6731","span":{"begin":71,"end":79},"obj":"NN"},{"id":"T6732","span":{"begin":80,"end":83},"obj":"CC"},{"id":"T6733","span":{"begin":84,"end":86},"obj":"FW"},{"id":"T6734","span":{"begin":87,"end":92},"obj":"FW"},{"id":"T6735","span":{"begin":93,"end":103},"obj":"VB"},{"id":"T6736","span":{"begin":104,"end":109},"obj":"VB"},{"id":"T6737","span":{"begin":110,"end":113},"obj":"DT"},{"id":"T6738","span":{"begin":114,"end":117},"obj":"NN"},{"id":"T6739","span":{"begin":118,"end":123},"obj":"JJ"},{"id":"T6740","span":{"begin":124,"end":131},"obj":"VB"},{"id":"T6741","span":{"begin":132,"end":157},"obj":"NN"},{"id":"T6742","span":{"begin":158,"end":164},"obj":"NN"},{"id":"T6743","span":{"begin":165,"end":166},"obj":"-LRB-"},{"id":"T6744","span":{"begin":166,"end":173},"obj":"NN"},{"id":"T6745","span":{"begin":173,"end":174},"obj":"-RRB-"},{"id":"T6746","span":{"begin":174,"end":175},"obj":"-COMMA-"},{"id":"T6747","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T6748","span":{"begin":179,"end":189},"obj":"RB"},{"id":"T6749","span":{"begin":190,"end":198},"obj":"VB"},{"id":"T6750","span":{"begin":199,"end":200},"obj":"-LRB-"},{"id":"T6751","span":{"begin":200,"end":202},"obj":"CD"},{"id":"T6752","span":{"begin":202,"end":203},"obj":"-RRB-"},{"id":"T6753","span":{"begin":205,"end":212},"obj":"NN"},{"id":"T6754","span":{"begin":213,"end":216},"obj":"VB"},{"id":"T6755","span":{"begin":217,"end":226},"obj":"VB"},{"id":"T6756","span":{"begin":227,"end":229},"obj":"IN"},{"id":"T6757","span":{"begin":230,"end":243},"obj":"NNP"},{"id":"T6758","span":{"begin":244,"end":248},"obj":"NNP"}],"relations":[{"id":"R5707","pred":"arg1Of","subj":"T6719","obj":"T6718"},{"id":"R5708","pred":"arg1Of","subj":"T6720","obj":"T6719"},{"id":"R5709","pred":"arg1Of","subj":"T6721","obj":"T6722"},{"id":"R5710","pred":"arg1Of","subj":"T6722","obj":"T6724"},{"id":"R5711","pred":"arg2Of","subj":"T6723","obj":"T6722"},{"id":"R5712","pred":"arg1Of","subj":"T6724","obj":"T6726"},{"id":"R5713","pred":"arg2Of","subj":"T6724","obj":"T6727"},{"id":"R5714","pred":"arg2Of","subj":"T6724","obj":"T6735"},{"id":"R5715","pred":"arg2Of","subj":"T6725","obj":"T6724"},{"id":"R5716","pred":"arg1Of","subj":"T6727","obj":"T6728"},{"id":"R5717","pred":"arg1Of","subj":"T6727","obj":"T6732"},{"id":"R5718","pred":"arg2Of","subj":"T6731","obj":"T6728"},{"id":"R5719","pred":"arg1Of","subj":"T6731","obj":"T6729"},{"id":"R5720","pred":"arg1Of","subj":"T6731","obj":"T6730"},{"id":"R5721","pred":"arg2Of","subj":"T6732","obj":"T6726"},{"id":"R5722","pred":"arg1Of","subj":"T6734","obj":"T6733"},{"id":"R5723","pred":"arg2Of","subj":"T6735","obj":"T6732"},{"id":"R5724","pred":"arg1Of","subj":"T6735","obj":"T6734"},{"id":"R5725","pred":"modOf","subj":"T6735","obj":"T6736"},{"id":"R5726","pred":"arg2Of","subj":"T6742","obj":"T6736"},{"id":"R5727","pred":"arg1Of","subj":"T6742","obj":"T6737"},{"id":"R5728","pred":"arg1Of","subj":"T6742","obj":"T6738"},{"id":"R5729","pred":"arg1Of","subj":"T6742","obj":"T6739"},{"id":"R5730","pred":"arg2Of","subj":"T6742","obj":"T6740"},{"id":"R5731","pred":"arg1Of","subj":"T6742","obj":"T6741"},{"id":"R5732","pred":"arg1Of","subj":"T6742","obj":"T6743"},{"id":"R5733","pred":"arg1Of","subj":"T6742","obj":"T6746"},{"id":"R5734","pred":"arg1Of","subj":"T6742","obj":"T6747"},{"id":"R5735","pred":"arg2Of","subj":"T6744","obj":"T6743"},{"id":"R5736","pred":"arg3Of","subj":"T6745","obj":"T6743"},{"id":"R5737","pred":"arg2Of","subj":"T6749","obj":"T6747"},{"id":"R5738","pred":"arg1Of","subj":"T6749","obj":"T6748"},{"id":"R5739","pred":"arg1Of","subj":"T6749","obj":"T6750"},{"id":"R5740","pred":"arg2Of","subj":"T6751","obj":"T6750"},{"id":"R5741","pred":"arg3Of","subj":"T6752","obj":"T6750"},{"id":"R5742","pred":"arg1Of","subj":"T6753","obj":"T6754"},{"id":"R5743","pred":"arg2Of","subj":"T6753","obj":"T6755"},{"id":"R5744","pred":"arg2Of","subj":"T6755","obj":"T6754"},{"id":"R5745","pred":"arg1Of","subj":"T6755","obj":"T6756"},{"id":"R5746","pred":"arg2Of","subj":"T6758","obj":"T6756"},{"id":"R5747","pred":"arg1Of","subj":"T6758","obj":"T6757"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T6765","span":{"begin":0,"end":2},"obj":"IN"},{"id":"T6766","span":{"begin":3,"end":8},"obj":"NN"},{"id":"T6767","span":{"begin":9,"end":20},"obj":"NN"},{"id":"T6768","span":{"begin":21,"end":29},"obj":"NNP"},{"id":"T6769","span":{"begin":29,"end":30},"obj":","},{"id":"T6770","span":{"begin":31,"end":34},"obj":"CD"},{"id":"T6771","span":{"begin":35,"end":38},"obj":"CC"},{"id":"T6772","span":{"begin":39,"end":42},"obj":"NNP"},{"id":"T6773","span":{"begin":43,"end":47},"obj":"VBD"},{"id":"T6774","span":{"begin":48,"end":57},"obj":"VBN"},{"id":"T6775","span":{"begin":58,"end":63},"obj":"IN"},{"id":"T6776","span":{"begin":64,"end":67},"obj":"DT"},{"id":"T6777","span":{"begin":68,"end":70},"obj":"CD"},{"id":"T6778","span":{"begin":71,"end":79},"obj":"NN"},{"id":"T6779","span":{"begin":80,"end":83},"obj":"CC"},{"id":"T6780","span":{"begin":84,"end":86},"obj":"IN"},{"id":"T6781","span":{"begin":87,"end":92},"obj":"NN"},{"id":"T6782","span":{"begin":93,"end":103},"obj":"VBN"},{"id":"T6783","span":{"begin":104,"end":109},"obj":"VBG"},{"id":"T6784","span":{"begin":110,"end":113},"obj":"DT"},{"id":"T6785","span":{"begin":114,"end":117},"obj":"NNP"},{"id":"T6786","span":{"begin":118,"end":123},"obj":"JJ"},{"id":"T6787","span":{"begin":124,"end":131},"obj":"VBN"},{"id":"T6788","span":{"begin":132,"end":157},"obj":"NN"},{"id":"T6789","span":{"begin":158,"end":164},"obj":"NN"},{"id":"T6790","span":{"begin":165,"end":166},"obj":"-LRB-"},{"id":"T6791","span":{"begin":166,"end":173},"obj":"NNP"},{"id":"T6792","span":{"begin":173,"end":174},"obj":"-RRB-"},{"id":"T6793","span":{"begin":174,"end":175},"obj":","},{"id":"T6794","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T6795","span":{"begin":179,"end":189},"obj":"RB"},{"id":"T6796","span":{"begin":190,"end":198},"obj":"VBN"},{"id":"T6797","span":{"begin":199,"end":200},"obj":"-LRB-"},{"id":"T6798","span":{"begin":200,"end":202},"obj":"CD"},{"id":"T6799","span":{"begin":202,"end":203},"obj":"-RRB-"},{"id":"T6800","span":{"begin":203,"end":204},"obj":"."},{"id":"T6801","span":{"begin":205,"end":212},"obj":"NNS"},{"id":"T6802","span":{"begin":213,"end":216},"obj":"VBP"},{"id":"T6803","span":{"begin":217,"end":226},"obj":"VBN"},{"id":"T6804","span":{"begin":227,"end":229},"obj":"IN"},{"id":"T6805","span":{"begin":230,"end":243},"obj":"NNP"},{"id":"T6806","span":{"begin":244,"end":248},"obj":"NNP"},{"id":"T6807","span":{"begin":248,"end":249},"obj":"."}],"relations":[{"id":"R5748","pred":"prep","subj":"T6765","obj":"T6774"},{"id":"R5749","pred":"amod","subj":"T6766","obj":"T6767"},{"id":"R5750","pred":"pobj","subj":"T6767","obj":"T6765"},{"id":"R5751","pred":"nsubjpass","subj":"T6768","obj":"T6774"},{"id":"R5752","pred":"punct","subj":"T6769","obj":"T6768"},{"id":"R5753","pred":"conj","subj":"T6770","obj":"T6768"},{"id":"R5754","pred":"cc","subj":"T6771","obj":"T6770"},{"id":"R5755","pred":"conj","subj":"T6772","obj":"T6770"},{"id":"R5756","pred":"auxpass","subj":"T6773","obj":"T6774"},{"id":"R5757","pred":"ROOT","subj":"T6774","obj":"T6774"},{"id":"R5758","pred":"prep","subj":"T6775","obj":"T6774"},{"id":"R5759","pred":"det","subj":"T6776","obj":"T6778"},{"id":"R5760","pred":"nummod","subj":"T6777","obj":"T6778"},{"id":"R5761","pred":"pobj","subj":"T6778","obj":"T6775"},{"id":"R5762","pred":"cc","subj":"T6779","obj":"T6775"},{"id":"R5763","pred":"conj","subj":"T6780","obj":"T6775"},{"id":"R5764","pred":"amod","subj":"T6781","obj":"T6782"},{"id":"R5765","pred":"conj","subj":"T6782","obj":"T6774"},{"id":"R5766","pred":"advcl","subj":"T6783","obj":"T6782"},{"id":"R5767","pred":"det","subj":"T6784","obj":"T6789"},{"id":"R5768","pred":"nmod","subj":"T6785","obj":"T6789"},{"id":"R5769","pred":"amod","subj":"T6786","obj":"T6789"},{"id":"R5770","pred":"amod","subj":"T6787","obj":"T6789"},{"id":"R5771","pred":"compound","subj":"T6788","obj":"T6789"},{"id":"R5772","pred":"dobj","subj":"T6789","obj":"T6783"},{"id":"R5773","pred":"punct","subj":"T6790","obj":"T6789"},{"id":"R5774","pred":"appos","subj":"T6791","obj":"T6789"},{"id":"R5775","pred":"punct","subj":"T6792","obj":"T6789"},{"id":"R5776","pred":"punct","subj":"T6793","obj":"T6783"},{"id":"R5777","pred":"mark","subj":"T6794","obj":"T6796"},{"id":"R5778","pred":"advmod","subj":"T6795","obj":"T6796"},{"id":"R5779","pred":"advcl","subj":"T6796","obj":"T6783"},{"id":"R5780","pred":"punct","subj":"T6797","obj":"T6783"},{"id":"R5781","pred":"npadvmod","subj":"T6798","obj":"T6783"},{"id":"R5782","pred":"punct","subj":"T6799","obj":"T6783"},{"id":"R5783","pred":"punct","subj":"T6800","obj":"T6774"},{"id":"R5784","pred":"nsubjpass","subj":"T6801","obj":"T6803"},{"id":"R5785","pred":"auxpass","subj":"T6802","obj":"T6803"},{"id":"R5786","pred":"ROOT","subj":"T6803","obj":"T6803"},{"id":"R5787","pred":"prep","subj":"T6804","obj":"T6803"},{"id":"R5788","pred":"compound","subj":"T6805","obj":"T6806"},{"id":"R5789","pred":"pobj","subj":"T6806","obj":"T6804"},{"id":"R5790","pred":"punct","subj":"T6807","obj":"T6803"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T6811","span":{"begin":9,"end":20},"obj":"http://purl.obolibrary.org/obo/GO_0006412"},{"id":"T6812","span":{"begin":146,"end":157},"obj":"http://purl.obolibrary.org/obo/GO_0006412"},{"id":"T6813","span":{"begin":132,"end":145},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    sentences

    {"project":"sentences","denotations":[{"id":"T6715","span":{"begin":0,"end":20},"obj":"Sentence"},{"id":"T6716","span":{"begin":21,"end":204},"obj":"Sentence"},{"id":"T6717","span":{"begin":205,"end":249},"obj":"Sentence"},{"id":"T69","span":{"begin":0,"end":20},"obj":"Sentence"},{"id":"T70","span":{"begin":21,"end":204},"obj":"Sentence"},{"id":"T71","span":{"begin":205,"end":249},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T6850","span":{"begin":21,"end":29},"obj":"Protein"},{"id":"T6851","span":{"begin":31,"end":34},"obj":"Protein"},{"id":"T6852","span":{"begin":39,"end":42},"obj":"Protein"},{"id":"T6853","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6854","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6855","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6856","span":{"begin":58,"end":63},"obj":"Positive_regulation"},{"id":"T6857","span":{"begin":58,"end":63},"obj":"Positive_regulation"},{"id":"T6858","span":{"begin":58,"end":63},"obj":"Positive_regulation"}],"relations":[{"id":"R5816","pred":"themeOf","subj":"T6850","obj":"T6853"},{"id":"R5817","pred":"themeOf","subj":"T6851","obj":"T6855"},{"id":"R5818","pred":"themeOf","subj":"T6852","obj":"T6854"},{"id":"R5819","pred":"themeOf","subj":"T6853","obj":"T6856"},{"id":"R5820","pred":"themeOf","subj":"T6854","obj":"T6858"},{"id":"R5821","pred":"themeOf","subj":"T6855","obj":"T6857"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T6859","span":{"begin":21,"end":23},"obj":"Protein"},{"id":"T6860","span":{"begin":24,"end":29},"obj":"Protein"},{"id":"T6861","span":{"begin":31,"end":34},"obj":"Protein"},{"id":"T6862","span":{"begin":39,"end":42},"obj":"Protein"},{"id":"T6863","span":{"begin":68,"end":79},"obj":"Protein"},{"id":"T6864","span":{"begin":114,"end":117},"obj":"Protein"},{"id":"T6865","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6866","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6867","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6868","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6869","span":{"begin":48,"end":57},"obj":"Gene_expression"}],"relations":[{"id":"R5822","pred":"themeOf","subj":"T6859","obj":"T6865"},{"id":"R5823","pred":"themeOf","subj":"T6860","obj":"T6866"},{"id":"R5824","pred":"themeOf","subj":"T6861","obj":"T6867"},{"id":"R5825","pred":"themeOf","subj":"T6862","obj":"T6868"},{"id":"R5826","pred":"themeOf","subj":"T6863","obj":"T6869"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    test2

    {"project":"test2","denotations":[{"id":"T6702","span":{"begin":21,"end":29},"obj":"Protein"},{"id":"T6703","span":{"begin":31,"end":34},"obj":"Protein"},{"id":"T6704","span":{"begin":39,"end":42},"obj":"Protein"},{"id":"T6705","span":{"begin":48,"end":57},"obj":"Gene_expression"}],"relations":[{"id":"R5698","pred":"themeOf","subj":"T6702","obj":"T6705"},{"id":"R5699","pred":"themeOf","subj":"T6703","obj":"T6705"},{"id":"R5700","pred":"themeOf","subj":"T6704","obj":"T6705"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T6706","span":{"begin":21,"end":29},"obj":"Protein"},{"id":"T6707","span":{"begin":31,"end":34},"obj":"Protein"},{"id":"T6708","span":{"begin":39,"end":42},"obj":"Protein"},{"id":"T6709","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6710","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6711","span":{"begin":48,"end":57},"obj":"Gene_expression"},{"id":"T6712","span":{"begin":58,"end":63},"obj":"Positive_regulation"},{"id":"T6713","span":{"begin":58,"end":63},"obj":"Positive_regulation"},{"id":"T6714","span":{"begin":58,"end":63},"obj":"Positive_regulation"}],"relations":[{"id":"R5701","pred":"themeOf","subj":"T6706","obj":"T6709"},{"id":"R5702","pred":"themeOf","subj":"T6707","obj":"T6711"},{"id":"R5703","pred":"themeOf","subj":"T6708","obj":"T6710"},{"id":"R5704","pred":"themeOf","subj":"T6709","obj":"T6712"},{"id":"R5705","pred":"themeOf","subj":"T6710","obj":"T6714"},{"id":"R5706","pred":"themeOf","subj":"T6711","obj":"T6713"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T6759","span":{"begin":31,"end":34},"obj":"Q04206"},{"id":"T6760","span":{"begin":31,"end":34},"obj":"P21579"},{"id":"T6761","span":{"begin":39,"end":42},"obj":"Q8UMQ1"},{"id":"T6762","span":{"begin":39,"end":42},"obj":"P04610"},{"id":"T6763","span":{"begin":39,"end":42},"obj":"P04608"},{"id":"T6764","span":{"begin":39,"end":42},"obj":"P04605"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"In vitro translation\nHA-IκB-α, p65 and Tat were expressed under the T7 promoter and in vitro translated using the TnT quick coupled transcription/translation system (Promega), as previously reported (50). Details are described in Supplementary Data."}