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PMC:3333881 / 10-422 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T144 13-20 NN denotes virus-1
T145 21-24 NN denotes Tat
T146 25-34 VB denotes activates
T147 35-40 NN denotes NF-κB
T148 41-44 IN denotes via
T149 45-53 JJ denotes physical
T150 54-65 NN denotes interaction
T151 66-70 IN denotes with
T152 71-76 NN denotes IκB-α
T153 77-80 CC denotes and
T154 81-84 NN denotes p65
T155 96-103 JJ denotes Nuclear
T156 104-110 NN denotes factor
T157 111-112 -LRB- denotes (
T158 112-114 NN denotes NF
T159 114-115 -RRB- denotes )
T160 115-118 NN denotes -κB
T161 119-121 VB denotes is
T162 122-123 DT denotes a
T163 124-130 NN denotes master
T164 131-140 NN denotes regulator
T165 141-143 IN denotes of
T166 144-160 JJ denotes pro-inflammatory
T167 161-166 NN denotes genes
T168 167-170 CC denotes and
T169 171-173 VB denotes is
T170 174-185 VB denotes upregulated
T171 186-188 IN denotes in
T172 189-194 JJ denotes human
T173 195-211 NN denotes immunodeficiency
T174 212-217 NN denotes virus
T175 218-219 CD denotes 1
T176 220-221 -LRB- denotes (
T177 221-226 NN denotes HIV-1
T178 226-227 -RRB- denotes )
T179 228-237 NN denotes infection
T180 239-249 NN denotes Mechanisms
T181 250-260 VB denotes underlying
T182 261-264 DT denotes the
T183 265-270 NN denotes NF-κB
T184 271-283 NN denotes deregulation
T185 284-286 IN denotes by
T186 287-292 NN denotes HIV-1
T187 293-296 VB denotes are
T188 297-305 JJ denotes relevant
T189 306-309 IN denotes for
T190 310-316 JJ denotes immune
T191 317-328 NN denotes dysfunction
T192 329-331 IN denotes in
T193 332-336 NN denotes AIDS
T194 338-340 PRP denotes We
T195 341-347 VB denotes report
T196 348-352 IN denotes that
T197 353-355 IN denotes in
T198 356-362 JJ denotes single
T199 363-368 JJ denotes round
T200 369-374 NN denotes HIV-1
T201 375-384 NN denotes infection
T202 384-385 -COMMA- denotes ,
T203 386-388 CC denotes or
T204 389-401 JJ denotes single-pulse
T205 402-405 NN denotes PMA
R76 T145 T144 arg1Of Tat,virus-1
R77 T145 T146 arg1Of Tat,activates
R78 T146 T148 arg1Of activates,via
R79 T147 T146 arg2Of NF-κB,activates
R80 T150 T148 arg2Of interaction,via
R81 T150 T149 arg1Of interaction,physical
R82 T150 T151 arg1Of interaction,with
R83 T152 T153 arg1Of IκB-α,and
R84 T153 T151 arg2Of and,with
R85 T154 T153 arg2Of p65,and
R86 T156 T155 arg1Of factor,Nuclear
R87 T156 T157 arg1Of factor,(
R88 T158 T157 arg2Of NF,(
R89 T159 T157 arg3Of ),(
R90 T160 T156 arg1Of -κB,factor
R91 T160 T161 arg1Of -κB,is
R92 T160 T169 arg1Of -κB,is
R93 T160 T170 arg2Of -κB,upregulated
R94 T161 T168 arg1Of is,and
R95 T164 T161 arg2Of regulator,is
R96 T164 T162 arg1Of regulator,a
R97 T164 T163 arg1Of regulator,master
R98 T164 T165 arg1Of regulator,of
R99 T167 T165 arg2Of genes,of
R100 T167 T166 arg1Of genes,pro-inflammatory
R101 T170 T168 arg2Of upregulated,and
R102 T170 T169 arg2Of upregulated,is
R103 T170 T171 arg1Of upregulated,in
R104 T174 T172 arg1Of virus,human
R105 T174 T173 arg1Of virus,immunodeficiency
R106 T174 T175 arg1Of virus,1
R107 T174 T176 arg1Of virus,(
R108 T177 T176 arg2Of HIV-1,(
R109 T178 T176 arg3Of ),(
R110 T179 T171 arg2Of infection,in
R111 T179 T174 arg1Of infection,virus
R112 T180 T181 arg1Of Mechanisms,underlying
R113 T180 T187 arg1Of Mechanisms,are
R114 T180 T188 arg1Of Mechanisms,relevant
R115 T184 T181 arg2Of deregulation,underlying
R116 T184 T182 arg1Of deregulation,the
R117 T184 T183 arg1Of deregulation,NF-κB
R118 T184 T185 arg1Of deregulation,by
R119 T186 T185 arg2Of HIV-1,by
R120 T188 T187 arg2Of relevant,are
R121 T188 T189 arg1Of relevant,for
R122 T191 T189 arg2Of dysfunction,for
R123 T191 T190 arg1Of dysfunction,immune
R124 T191 T192 arg1Of dysfunction,in
R125 T193 T192 arg2Of AIDS,in
R126 T194 T195 arg1Of We,report
R127 T201 T198 arg1Of infection,single
R128 T201 T199 arg1Of infection,round
R129 T201 T200 arg1Of infection,HIV-1
R130 T201 T203 arg1Of infection,or
R131 T203 T197 arg2Of or,in
R132 T203 T202 arg1Of or,","

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T404 13-20 JJ denotes virus-1
T405 21-24 NNP denotes Tat
T406 25-34 VBZ denotes activates
T407 35-40 NNP denotes NF-κB
T408 41-44 IN denotes via
T409 45-53 JJ denotes physical
T410 54-65 NN denotes interaction
T411 66-70 IN denotes with
T412 71-76 NNP denotes IκB-α
T413 77-80 CC denotes and
T414 81-84 CD denotes p65
T415 96-103 JJ denotes Nuclear
T416 104-110 NN denotes factor
T417 111-112 -LRB- denotes (
T418 112-114 NNP denotes NF
T419 114-115 -RRB- denotes )
T420 115-116 : denotes -
T421 116-118 NN denotes κB
T422 119-121 VBZ denotes is
T423 122-123 DT denotes a
T424 124-130 NN denotes master
T425 131-140 NN denotes regulator
T426 141-143 IN denotes of
T427 144-160 JJ denotes pro-inflammatory
T428 161-166 NNS denotes genes
T429 167-170 CC denotes and
T430 171-173 VBZ denotes is
T431 174-185 VBN denotes upregulated
T432 186-188 IN denotes in
T433 189-194 JJ denotes human
T434 195-211 NN denotes immunodeficiency
T435 212-217 NN denotes virus
T436 218-219 CD denotes 1
T437 220-221 -LRB- denotes (
T438 221-226 NN denotes HIV-1
T439 226-227 -RRB- denotes )
T440 228-237 NN denotes infection
T441 237-238 . denotes .
T442 239-249 NNPS denotes Mechanisms
T443 250-260 VBG denotes underlying
T444 261-264 DT denotes the
T445 265-270 JJ denotes NF-κB
T446 271-283 NN denotes deregulation
T447 284-286 IN denotes by
T448 287-292 NNP denotes HIV-1
T449 293-296 VBP denotes are
T450 297-305 JJ denotes relevant
T451 306-309 IN denotes for
T452 310-316 JJ denotes immune
T453 317-328 NN denotes dysfunction
T454 329-331 IN denotes in
T455 332-336 NNP denotes AIDS
T456 336-337 . denotes .
T457 338-340 PRP denotes We
T458 341-347 VBP denotes report
T459 348-352 IN denotes that
T460 353-355 IN denotes in
T461 356-362 JJ denotes single
T462 363-368 NN denotes round
T463 369-374 NN denotes HIV-1
T464 375-384 NN denotes infection
T465 384-385 , denotes ,
T466 386-388 CC denotes or
T467 389-401 JJ denotes single-pulse
T468 402-405 NNP denotes PMA
R295 T404 T405 compound virus-1,Tat
R296 T405 T406 nsubj Tat,activates
R297 T406 T422 ccomp activates,is
R298 T407 T406 dobj NF-κB,activates
R299 T408 T406 prep via,activates
R300 T409 T410 amod physical,interaction
R301 T410 T408 pobj interaction,via
R302 T411 T410 prep with,interaction
R303 T412 T411 pobj IκB-α,with
R304 T413 T412 cc and,IκB-α
R305 T414 T416 nummod p65,factor
R306 T415 T416 amod Nuclear,factor
R307 T416 T410 conj factor,interaction
R308 T417 T410 punct (,interaction
R309 T418 T406 npadvmod NF,activates
R310 T419 T418 punct ),NF
R311 T420 T422 punct -,is
R312 T421 T422 nsubj κB,is
R313 T422 T422 ROOT is,is
R314 T423 T425 det a,regulator
R315 T424 T425 compound master,regulator
R316 T425 T422 attr regulator,is
R317 T426 T425 prep of,regulator
R318 T427 T428 amod pro-inflammatory,genes
R319 T428 T426 pobj genes,of
R320 T429 T422 cc and,is
R321 T430 T431 auxpass is,upregulated
R322 T431 T422 conj upregulated,is
R323 T432 T431 prep in,upregulated
R324 T433 T434 amod human,immunodeficiency
R325 T434 T435 compound immunodeficiency,virus
R326 T435 T432 pobj virus,in
R327 T436 T435 nummod 1,virus
R328 T437 T440 punct (,infection
R329 T438 T440 nmod HIV-1,infection
R330 T439 T440 punct ),infection
R331 T440 T435 appos infection,virus
R332 T441 T422 punct .,is
R333 T442 T449 nsubj Mechanisms,are
R334 T443 T442 acl underlying,Mechanisms
R335 T444 T446 det the,deregulation
R336 T445 T446 amod NF-κB,deregulation
R337 T446 T443 dobj deregulation,underlying
R338 T447 T446 prep by,deregulation
R339 T448 T447 pobj HIV-1,by
R340 T449 T449 ROOT are,are
R341 T450 T449 acomp relevant,are
R342 T451 T450 prep for,relevant
R343 T452 T453 amod immune,dysfunction
R344 T453 T451 pobj dysfunction,for
R345 T454 T453 prep in,dysfunction
R346 T455 T454 pobj AIDS,in
R347 T456 T449 punct .,are
R348 T457 T458 nsubj We,report
R349 T458 T458 ROOT report,report
R352 T461 T464 amod single,infection
R353 T462 T464 compound round,infection
R354 T463 T464 compound HIV-1,infection
R355 T464 T460 pobj infection,in
R356 T465 T460 punct ",",in
R357 T466 T460 cc or,in

GO-BP

Id Subject Object Predicate Lexical cue
T633 25-40 http://purl.obolibrary.org/obo/GO_0051092 denotes activates NF-κB

sentences

Id Subject Object Predicate Lexical cue
T90 96-238 Sentence denotes Nuclear factor (NF)-κB is a master regulator of pro-inflammatory genes and is upregulated in human immunodeficiency virus 1 (HIV-1) infection.
T91 239-337 Sentence denotes Mechanisms underlying the NF-κB deregulation by HIV-1 are relevant for immune dysfunction in AIDS.
T2 87-95 Sentence denotes Abstract
T3 96-238 Sentence denotes Nuclear factor (NF)-κB is a master regulator of pro-inflammatory genes and is upregulated in human immunodeficiency virus 1 (HIV-1) infection.
T4 239-337 Sentence denotes Mechanisms underlying the NF-κB deregulation by HIV-1 are relevant for immune dysfunction in AIDS.

ICD10

Id Subject Object Predicate Lexical cue
T639 195-211 http://purl.bioontology.org/ontology/ICD10/D84.9 denotes immunodeficiency

events-check-again

Id Subject Object Predicate Lexical cue
T858 21-24 Protein denotes Tat
T859 54-65 Binding denotes interaction
T860 71-76 Protein denotes IκB-α
T861 81-84 Protein denotes p65
R741 T858 T859 themeOf Tat,interaction
R742 T860 T859 themeOf IκB-α,interaction

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T903 21-24 Protein denotes Tat
T904 35-40 Protein denotes NF-κB
T905 71-76 Protein denotes IκB-α
T906 25-34 Positive_regulation denotes activates
T907 54-65 Binding denotes interaction
T908 25-34 Positive_regulation denotes activates
T909 116-118 Protein denotes κB
T910 174-185 Positive_regulation denotes upregulated
T911 265-270 Protein denotes NF-κB
T912 271-283 Regulation denotes deregulation
R631 T903 T906 causeOf Tat,activates
R632 T903 T908 causeOf Tat,activates
R633 T904 T906 themeOf NF-κB,activates
R634 T905 T907 themeOf IκB-α,interaction
R635 T907 T908 themeOf interaction,activates
R636 T909 T910 themeOf κB,upregulated
R637 T911 T912 themeOf NF-κB,deregulation

test2

Id Subject Object Predicate Lexical cue
T46 21-24 Protein denotes Tat
T47 54-65 Binding denotes interaction
T48 71-76 Protein denotes IκB-α
T49 81-84 Protein denotes p65
R654 T46 T47 themeOf Tat,interaction
R655 T48 T47 themeOf IκB-α,interaction

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T97 54-65 Binding denotes interaction
T117 21-24 Protein denotes Tat
T127 71-76 Protein denotes IκB-α
T133 81-84 Protein denotes p65
R51 T117 T97 themeOf Tat,interaction
R61 T127 T97 themeOf IκB-α,interaction

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T358 21-24 P04608 denotes Tat
T359 21-24 P04605 denotes Tat
T360 21-24 P04610 denotes Tat
T361 21-24 Q8UMQ1 denotes Tat
T362 81-84 P21579 denotes p65
T363 81-84 Q04206 denotes p65