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PMC:3333881 / 0-265 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T142 0-5 JJ denotes Human
T143 6-22 NN denotes immunodeficiency
T144 23-30 NN denotes virus-1
T145 31-34 NN denotes Tat
T146 35-44 VB denotes activates
T147 45-50 NN denotes NF-κB
T148 51-54 IN denotes via
T149 55-63 JJ denotes physical
T150 64-75 NN denotes interaction
T151 76-80 IN denotes with
T152 81-86 NN denotes IκB-α
T153 87-90 CC denotes and
T154 91-94 NN denotes p65
T155 106-113 JJ denotes Nuclear
T156 114-120 NN denotes factor
T157 121-122 -LRB- denotes (
T158 122-124 NN denotes NF
T159 124-125 -RRB- denotes )
T160 125-128 NN denotes -κB
T161 129-131 VB denotes is
T162 132-133 DT denotes a
T163 134-140 NN denotes master
T164 141-150 NN denotes regulator
T165 151-153 IN denotes of
T166 154-170 JJ denotes pro-inflammatory
T167 171-176 NN denotes genes
T168 177-180 CC denotes and
T169 181-183 VB denotes is
T170 184-195 VB denotes upregulated
T171 196-198 IN denotes in
T172 199-204 JJ denotes human
T173 205-221 NN denotes immunodeficiency
T174 222-227 NN denotes virus
T175 228-229 CD denotes 1
T176 230-231 -LRB- denotes (
T177 231-236 NN denotes HIV-1
T178 236-237 -RRB- denotes )
T179 238-247 NN denotes infection
T180 249-259 NN denotes Mechanisms
R74 T145 T142 arg1Of Tat,Human
R75 T145 T143 arg1Of Tat,immunodeficiency
R76 T145 T144 arg1Of Tat,virus-1
R77 T145 T146 arg1Of Tat,activates
R78 T146 T148 arg1Of activates,via
R79 T147 T146 arg2Of NF-κB,activates
R80 T150 T148 arg2Of interaction,via
R81 T150 T149 arg1Of interaction,physical
R82 T150 T151 arg1Of interaction,with
R83 T152 T153 arg1Of IκB-α,and
R84 T153 T151 arg2Of and,with
R85 T154 T153 arg2Of p65,and
R86 T156 T155 arg1Of factor,Nuclear
R87 T156 T157 arg1Of factor,(
R88 T158 T157 arg2Of NF,(
R89 T159 T157 arg3Of ),(
R90 T160 T156 arg1Of -κB,factor
R91 T160 T161 arg1Of -κB,is
R92 T160 T169 arg1Of -κB,is
R93 T160 T170 arg2Of -κB,upregulated
R94 T161 T168 arg1Of is,and
R95 T164 T161 arg2Of regulator,is
R96 T164 T162 arg1Of regulator,a
R97 T164 T163 arg1Of regulator,master
R98 T164 T165 arg1Of regulator,of
R99 T167 T165 arg2Of genes,of
R100 T167 T166 arg1Of genes,pro-inflammatory
R101 T170 T168 arg2Of upregulated,and
R102 T170 T169 arg2Of upregulated,is
R103 T170 T171 arg1Of upregulated,in
R104 T174 T172 arg1Of virus,human
R105 T174 T173 arg1Of virus,immunodeficiency
R106 T174 T175 arg1Of virus,1
R107 T174 T176 arg1Of virus,(
R108 T177 T176 arg2Of HIV-1,(
R109 T178 T176 arg3Of ),(
R110 T179 T171 arg2Of infection,in
R111 T179 T174 arg1Of infection,virus

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T402 0-5 JJ denotes Human
T403 6-22 NN denotes immunodeficiency
T404 23-30 JJ denotes virus-1
T405 31-34 NNP denotes Tat
T406 35-44 VBZ denotes activates
T407 45-50 NNP denotes NF-κB
T408 51-54 IN denotes via
T409 55-63 JJ denotes physical
T410 64-75 NN denotes interaction
T411 76-80 IN denotes with
T412 81-86 NNP denotes IκB-α
T413 87-90 CC denotes and
T414 91-94 CD denotes p65
T415 106-113 JJ denotes Nuclear
T416 114-120 NN denotes factor
T417 121-122 -LRB- denotes (
T418 122-124 NNP denotes NF
T419 124-125 -RRB- denotes )
T420 125-126 : denotes -
T421 126-128 NN denotes κB
T422 129-131 VBZ denotes is
T423 132-133 DT denotes a
T424 134-140 NN denotes master
T425 141-150 NN denotes regulator
T426 151-153 IN denotes of
T427 154-170 JJ denotes pro-inflammatory
T428 171-176 NNS denotes genes
T429 177-180 CC denotes and
T430 181-183 VBZ denotes is
T431 184-195 VBN denotes upregulated
T432 196-198 IN denotes in
T433 199-204 JJ denotes human
T434 205-221 NN denotes immunodeficiency
T435 222-227 NN denotes virus
T436 228-229 CD denotes 1
T437 230-231 -LRB- denotes (
T438 231-236 NN denotes HIV-1
T439 236-237 -RRB- denotes )
T440 238-247 NN denotes infection
T441 247-248 . denotes .
T442 249-259 NNPS denotes Mechanisms
R293 T402 T403 amod Human,immunodeficiency
R294 T403 T405 compound immunodeficiency,Tat
R295 T404 T405 compound virus-1,Tat
R296 T405 T406 nsubj Tat,activates
R297 T406 T422 ccomp activates,is
R298 T407 T406 dobj NF-κB,activates
R299 T408 T406 prep via,activates
R300 T409 T410 amod physical,interaction
R301 T410 T408 pobj interaction,via
R302 T411 T410 prep with,interaction
R303 T412 T411 pobj IκB-α,with
R304 T413 T412 cc and,IκB-α
R305 T414 T416 nummod p65,factor
R306 T415 T416 amod Nuclear,factor
R307 T416 T410 conj factor,interaction
R308 T417 T410 punct (,interaction
R309 T418 T406 npadvmod NF,activates
R310 T419 T418 punct ),NF
R311 T420 T422 punct -,is
R312 T421 T422 nsubj κB,is
R313 T422 T422 ROOT is,is
R314 T423 T425 det a,regulator
R315 T424 T425 compound master,regulator
R316 T425 T422 attr regulator,is
R317 T426 T425 prep of,regulator
R318 T427 T428 amod pro-inflammatory,genes
R319 T428 T426 pobj genes,of
R320 T429 T422 cc and,is
R321 T430 T431 auxpass is,upregulated
R322 T431 T422 conj upregulated,is
R323 T432 T431 prep in,upregulated
R324 T433 T434 amod human,immunodeficiency
R325 T434 T435 compound immunodeficiency,virus
R326 T435 T432 pobj virus,in
R327 T436 T435 nummod 1,virus
R328 T437 T440 punct (,infection
R329 T438 T440 nmod HIV-1,infection
R330 T439 T440 punct ),infection
R331 T440 T435 appos infection,virus
R332 T441 T422 punct .,is

GO-BP

Id Subject Object Predicate Lexical cue
T633 35-50 http://purl.obolibrary.org/obo/GO_0051092 denotes activates NF-κB

sentences

Id Subject Object Predicate Lexical cue
T89 0-94 Sentence denotes Human immunodeficiency virus-1 Tat activates NF-κB via physical interaction with IκB-α and p65
T90 106-248 Sentence denotes Nuclear factor (NF)-κB is a master regulator of pro-inflammatory genes and is upregulated in human immunodeficiency virus 1 (HIV-1) infection.
T1 0-94 Sentence denotes Human immunodeficiency virus-1 Tat activates NF-κB via physical interaction with IκB-α and p65
T2 97-105 Sentence denotes Abstract
T3 106-248 Sentence denotes Nuclear factor (NF)-κB is a master regulator of pro-inflammatory genes and is upregulated in human immunodeficiency virus 1 (HIV-1) infection.

ICD10

Id Subject Object Predicate Lexical cue
T638 6-22 http://purl.bioontology.org/ontology/ICD10/D84.9 denotes immunodeficiency
T639 205-221 http://purl.bioontology.org/ontology/ICD10/D84.9 denotes immunodeficiency

events-check-again

Id Subject Object Predicate Lexical cue
T858 31-34 Protein denotes Tat
T859 64-75 Binding denotes interaction
T860 81-86 Protein denotes IκB-α
T861 91-94 Protein denotes p65
R741 T858 T859 themeOf Tat,interaction
R742 T860 T859 themeOf IκB-α,interaction

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T903 31-34 Protein denotes Tat
T904 45-50 Protein denotes NF-κB
T905 81-86 Protein denotes IκB-α
T906 35-44 Positive_regulation denotes activates
T907 64-75 Binding denotes interaction
T908 35-44 Positive_regulation denotes activates
T909 126-128 Protein denotes κB
T910 184-195 Positive_regulation denotes upregulated
R631 T903 T906 causeOf Tat,activates
R632 T903 T908 causeOf Tat,activates
R633 T904 T906 themeOf NF-κB,activates
R634 T905 T907 themeOf IκB-α,interaction
R635 T907 T908 themeOf interaction,activates
R636 T909 T910 themeOf κB,upregulated

test2

Id Subject Object Predicate Lexical cue
T46 31-34 Protein denotes Tat
T47 64-75 Binding denotes interaction
T48 81-86 Protein denotes IκB-α
T49 91-94 Protein denotes p65
R654 T46 T47 themeOf Tat,interaction
R655 T48 T47 themeOf IκB-α,interaction

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T97 64-75 Binding denotes interaction
T117 31-34 Protein denotes Tat
T127 81-86 Protein denotes IκB-α
T133 91-94 Protein denotes p65
R51 T117 T97 themeOf Tat,interaction
R61 T127 T97 themeOf IκB-α,interaction

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T358 31-34 P04608 denotes Tat
T359 31-34 P04605 denotes Tat
T360 31-34 P04610 denotes Tat
T361 31-34 Q8UMQ1 denotes Tat
T362 91-94 P21579 denotes p65
T363 91-94 Q04206 denotes p65