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PMC:3320587 / 995-1207 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T361 204-210 JJ denotes innate
T360 200-203 DT denotes the
T359 198-199 -COMMA- denotes ,
T358 194-198 RB denotes Thus
T357 182-192 NN denotes expression
T356 177-181 NN denotes gene
T355 171-176 NN denotes NFAT5
T354 159-170 JJ denotes MTb-induced
T353 150-158 VB denotes inhibits
T352 136-149 RB denotes significantly
T351 134-135 -COMMA- denotes ,
T350 129-134 NN denotes TRAF6
T349 125-128 CC denotes and
T348 123-124 -COMMA- denotes ,
T347 118-123 NN denotes IRAK1
T346 116-117 -COMMA- denotes ,
T345 111-116 NN denotes MyD88
T344 101-110 NN denotes molecules
T343 91-100 VB denotes signaling
T342 80-90 JJ denotes downstream
T341 76-79 DT denotes the
T340 66-75 VB denotes including
T339 64-65 -COMMA- denotes ,
T338 55-64 NN denotes monocytes
T337 49-54 JJ denotes human
T336 46-48 IN denotes in
T335 38-45 NN denotes pathway
T334 34-37 NN denotes TLR
T333 30-33 DT denotes the
T332 27-29 IN denotes of
T331 16-26 NN denotes components
T330 12-15 JJ denotes key
T329 9-11 IN denotes of
T328 4-8 NN denotes RNAi
T327 1-3 IN denotes by
R158 T328 T327 arg2Of RNAi,by
R159 T331 T329 arg2Of components,of
R160 T331 T330 arg1Of components,key
R161 T331 T332 arg1Of components,of
R162 T335 T332 arg2Of pathway,of
R163 T335 T333 arg1Of pathway,the
R164 T335 T334 arg1Of pathway,TLR
R165 T335 T336 arg1Of pathway,in
R166 T338 T336 arg2Of monocytes,in
R167 T338 T337 arg1Of monocytes,human
R168 T338 T339 arg1Of monocytes,","
R169 T338 T340 arg1Of monocytes,including
R170 T344 T341 arg1Of molecules,the
R171 T344 T342 arg1Of molecules,downstream
R172 T344 T343 arg1Of molecules,signaling
R173 T345 T346 arg1Of MyD88,","
R174 T346 T349 arg1Of ",",and
R175 T347 T346 arg2Of IRAK1,","
R176 T349 T340 arg2Of and,including
R177 T349 T344 arg1Of and,molecules
R178 T349 T348 arg1Of and,","
R179 T350 T349 arg2Of TRAF6,and
R182 T353 T351 arg1Of inhibits,","
R183 T353 T352 arg1Of inhibits,significantly
R184 T357 T353 arg2Of expression,inhibits
R185 T357 T354 arg1Of expression,MTb-induced
R186 T357 T355 arg1Of expression,NFAT5
R187 T357 T356 arg1Of expression,gene

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T89 111-116 Protein denotes MyD88
T90 118-123 Protein denotes IRAK1
T91 129-134 Protein denotes TRAF6
T92 171-176 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T415 171-176 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T419 111-116 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T420 129-134 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T106 177-192 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T105 4-8 http://purl.obolibrary.org/obo/GO_0016246 denotes RNAi
T101 91-100 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

simple1

Id Subject Object Predicate Lexical cue
T172 111-116 Protein denotes MyD88
T173 118-123 Protein denotes IRAK1
T174 129-134 Protein denotes TRAF6
T175 171-176 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T759 111-116 Protein denotes MyD88
T760 118-123 Protein denotes IRAK1
T761 129-134 Protein denotes TRAF6
T762 171-176 Protein denotes NFAT5
T772 159-170 Positive_regulation denotes MTb-induced
T773 150-158 Negative_regulation denotes inhibits
T774 182-192 Gene_expression denotes expression
R587 T762 T774 themeOf NFAT5,expression
R593 T774 T773 themeOf expression,inhibits
R594 T774 T772 themeOf expression,MTb-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 111-116 Protein denotes MyD88
T446 118-123 Protein denotes IRAK1
T447 129-134 Protein denotes TRAF6
T448 171-176 Protein denotes NFAT5
T458 182-192 Gene_expression denotes expression
T459 150-158 Negative_regulation denotes inhibits
T460 159-170 Positive_regulation denotes MTb-induced
R512 T448 T458 themeOf NFAT5,expression
R520 T458 T459 themeOf expression,inhibits
R521 T458 T460 themeOf expression,MTb-induced

DLUT931

Id Subject Object Predicate Lexical cue
T437 150-158 Negative_regulation denotes inhibits
T436 159-170 Positive_regulation denotes MTb-induced
T435 182-192 Gene_expression denotes expression
T425 111-116 Protein denotes MyD88
T426 118-123 Protein denotes IRAK1
T427 129-134 Protein denotes TRAF6
T428 171-176 Protein denotes NFAT5
R241 T435 T436 themeOf expression,MTb-induced
R242 T436 T437 themeOf MTb-induced,inhibits
R504 T428 T435 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T820 111-192 Negative_regulation denotes MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression
T817 159-192 Gene_expression denotes MTb-induced NFAT5 gene expression
T808 101-110 Entity denotes molecules
T781 111-135 Protein denotes MyD88, IRAK1, and TRAF6,
T791 49-65 Entity denotes human monocytes,
T792 118-124 Protein denotes IRAK1,
T794 171-176 Protein denotes NFAT5
T801 159-170 Protein denotes MTb-induced
T802 129-134 Protein denotes TRAF6
R457 T817 T820 themeOf MTb-induced NFAT5 gene expression,"MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R597 T781 T820 causeOf "MyD88, IRAK1, and TRAF6,","MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R602 T794 T817 themeOf NFAT5,MTb-induced NFAT5 gene expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T702 204-210 NN denotes innate
T701 200-203 DT denotes the
T700 198-199 , denotes ,
T699 194-198 RB denotes Thus
T698 192-193 . denotes .
T697 182-192 NN denotes expression
T696 177-181 NN denotes gene
T695 171-176 CD denotes NFAT5
T694 159-170 JJ denotes MTb-induced
T693 150-158 VBZ denotes inhibits
T692 136-149 RB denotes significantly
T691 134-135 , denotes ,
T690 129-134 NNP denotes TRAF6
T689 125-128 CC denotes and
T688 123-124 , denotes ,
T687 118-123 NNP denotes IRAK1
T686 116-117 , denotes ,
T685 111-116 NNP denotes MyD88
T684 101-110 NNS denotes molecules
T683 91-100 VBG denotes signaling
T667 1-3 IN denotes by
T668 4-8 NNS denotes RNAi
T669 9-11 IN denotes of
T670 12-15 JJ denotes key
T671 16-26 NNS denotes components
T672 27-29 IN denotes of
T673 30-33 DT denotes the
T674 34-37 NNP denotes TLR
T675 38-45 NN denotes pathway
T676 46-48 IN denotes in
T677 49-54 JJ denotes human
T678 55-64 NNS denotes monocytes
T679 64-65 , denotes ,
T680 66-75 VBG denotes including
T681 76-79 DT denotes the
T682 80-90 JJ denotes downstream
R382 T683 T684 amod signaling,molecules
R383 T684 T680 pobj molecules,including
R384 T685 T680 pobj MyD88,including
R385 T686 T685 punct ",",MyD88
R386 T687 T685 conj IRAK1,MyD88
R387 T688 T687 punct ",",IRAK1
R388 T689 T687 cc and,IRAK1
R389 T690 T687 conj TRAF6,IRAK1
R390 T691 T693 punct ",",inhibits
R391 T692 T693 advmod significantly,inhibits
R392 T693 T693 ROOT inhibits,inhibits
R393 T694 T697 amod MTb-induced,expression
R394 T695 T697 nummod NFAT5,expression
R395 T696 T697 compound gene,expression
R396 T697 T693 dobj expression,inhibits
R397 T698 T693 punct .,inhibits
R566 T668 T667 pobj RNAi,by
R567 T669 T668 prep of,RNAi
R568 T670 T671 amod key,components
R569 T671 T669 pobj components,of
R570 T672 T671 prep of,components
R571 T673 T675 det the,pathway
R572 T674 T675 compound TLR,pathway
R573 T675 T672 pobj pathway,of
R574 T676 T675 prep in,pathway
R575 T677 T678 amod human,monocytes
R576 T678 T676 pobj monocytes,in
R577 T679 T678 punct ",",monocytes
R578 T680 T678 prep including,monocytes
R579 T681 T684 det the,molecules
R580 T682 T684 amod downstream,molecules

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T148 150-158 Negative_regulation denotes inhibits
T147 150-158 Negative_regulation denotes inhibits
T146 150-158 Negative_regulation denotes inhibits
T145 159-170 Positive_regulation denotes MTb-induced
T144 182-192 Gene_expression denotes expression
T140 171-181 Protein denotes NFAT5 gene
T139 129-134 Protein denotes TRAF6
T138 118-123 Protein denotes IRAK1
T137 111-116 Protein denotes MyD88
T136 34-37 Protein denotes TLR
R26 T140 T144 themeOf NFAT5 gene,expression
R30 T144 T145 themeOf expression,MTb-induced
R31 T145 T146 themeOf MTb-induced,inhibits
R32 T145 T147 themeOf MTb-induced,inhibits
R33 T145 T148 themeOf MTb-induced,inhibits

testone

Id Subject Object Predicate Lexical cue
T28 182-192 Gene_expression denotes expression
T27 163-170 Positive_regulation denotes induced
T26 150-158 Negative_regulation denotes inhibits
T19 171-176 Protein denotes NFAT5
T18 129-134 Protein denotes TRAF6
T17 118-123 Protein denotes IRAK1
T16 111-116 Protein denotes MyD88
R3 T18 T26 causeOf TRAF6,inhibits
R4 T19 T28 themeOf NFAT5,expression
R8 T27 T26 themeOf induced,inhibits
R9 T28 T27 themeOf expression,induced
R2 T17 T26 causeOf IRAK1,inhibits

test3

Id Subject Object Predicate Lexical cue
T39 171-176 Protein denotes NFAT5
T38 129-134 Protein denotes TRAF6
T37 118-123 Protein denotes IRAK1
T36 111-116 Protein denotes MyD88
T51 171-176 Protein denotes NFAT5
T50 129-134 Protein denotes TRAF6
T49 118-123 Protein denotes IRAK1
T48 111-116 Protein denotes MyD88