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PMC:3320587 / 979-1130 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T351 150-151 -COMMA- denotes ,
T350 145-150 NN denotes TRAF6
T349 141-144 CC denotes and
T348 139-140 -COMMA- denotes ,
T347 134-139 NN denotes IRAK1
T346 132-133 -COMMA- denotes ,
T345 127-132 NN denotes MyD88
T344 117-126 NN denotes molecules
T343 107-116 VB denotes signaling
T342 96-106 JJ denotes downstream
T341 92-95 DT denotes the
T340 82-91 VB denotes including
T339 80-81 -COMMA- denotes ,
T338 71-80 NN denotes monocytes
T337 65-70 JJ denotes human
T336 62-64 IN denotes in
T335 54-61 NN denotes pathway
T334 50-53 NN denotes TLR
T333 46-49 DT denotes the
T332 43-45 IN denotes of
T331 32-42 NN denotes components
T330 28-31 JJ denotes key
T329 25-27 IN denotes of
T328 20-24 NN denotes RNAi
T327 17-19 IN denotes by
T326 7-16 NN denotes silencing
T325 5-6 -COMMA- denotes ,
R155 T326 T327 arg1Of silencing,by
R156 T326 T329 arg1Of silencing,of
R158 T328 T327 arg2Of RNAi,by
R159 T331 T329 arg2Of components,of
R160 T331 T330 arg1Of components,key
R161 T331 T332 arg1Of components,of
R162 T335 T332 arg2Of pathway,of
R163 T335 T333 arg1Of pathway,the
R164 T335 T334 arg1Of pathway,TLR
R165 T335 T336 arg1Of pathway,in
R166 T338 T336 arg2Of monocytes,in
R167 T338 T337 arg1Of monocytes,human
R168 T338 T339 arg1Of monocytes,","
R169 T338 T340 arg1Of monocytes,including
R170 T344 T341 arg1Of molecules,the
R171 T344 T342 arg1Of molecules,downstream
R172 T344 T343 arg1Of molecules,signaling
R173 T345 T346 arg1Of MyD88,","
R174 T346 T349 arg1Of ",",and
R175 T347 T346 arg2Of IRAK1,","
R176 T349 T340 arg2Of and,including
R177 T349 T344 arg1Of and,molecules
R178 T349 T348 arg1Of and,","
R179 T350 T349 arg2Of TRAF6,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T89 127-132 Protein denotes MyD88
T90 134-139 Protein denotes IRAK1
T91 145-150 Protein denotes TRAF6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T419 127-132 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T420 145-150 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T105 20-24 http://purl.obolibrary.org/obo/GO_0016246 denotes RNAi
T101 107-116 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

simple1

Id Subject Object Predicate Lexical cue
T172 127-132 Protein denotes MyD88
T173 134-139 Protein denotes IRAK1
T174 145-150 Protein denotes TRAF6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T759 127-132 Protein denotes MyD88
T760 134-139 Protein denotes IRAK1
T761 145-150 Protein denotes TRAF6
T771 7-16 Negative_regulation denotes silencing
R585 T759 T771 themeOf MyD88,silencing
R586 T760 T771 themeOf IRAK1,silencing

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 127-132 Protein denotes MyD88
T446 134-139 Protein denotes IRAK1
T447 145-150 Protein denotes TRAF6

DLUT931

Id Subject Object Predicate Lexical cue
T425 127-132 Protein denotes MyD88
T426 134-139 Protein denotes IRAK1
T427 145-150 Protein denotes TRAF6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T808 117-126 Entity denotes molecules
T781 127-151 Protein denotes MyD88, IRAK1, and TRAF6,
T791 65-81 Entity denotes human monocytes,
T792 134-140 Protein denotes IRAK1,
T802 145-150 Protein denotes TRAF6

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T691 150-151 , denotes ,
T690 145-150 NNP denotes TRAF6
T689 141-144 CC denotes and
T688 139-140 , denotes ,
T687 134-139 NNP denotes IRAK1
T686 132-133 , denotes ,
T685 127-132 NNP denotes MyD88
T684 117-126 NNS denotes molecules
T683 107-116 VBG denotes signaling
T665 5-6 , denotes ,
T666 7-16 VBG denotes silencing
T667 17-19 IN denotes by
T668 20-24 NNS denotes RNAi
T669 25-27 IN denotes of
T670 28-31 JJ denotes key
T671 32-42 NNS denotes components
T672 43-45 IN denotes of
T673 46-49 DT denotes the
T674 50-53 NNP denotes TLR
T675 54-61 NN denotes pathway
T676 62-64 IN denotes in
T677 65-70 JJ denotes human
T678 71-80 NNS denotes monocytes
T679 80-81 , denotes ,
T680 82-91 VBG denotes including
T681 92-95 DT denotes the
T682 96-106 JJ denotes downstream
R382 T683 T684 amod signaling,molecules
R383 T684 T680 pobj molecules,including
R384 T685 T680 pobj MyD88,including
R385 T686 T685 punct ",",MyD88
R386 T687 T685 conj IRAK1,MyD88
R387 T688 T687 punct ",",IRAK1
R388 T689 T687 cc and,IRAK1
R389 T690 T687 conj TRAF6,IRAK1
R565 T667 T666 prep by,silencing
R566 T668 T667 pobj RNAi,by
R567 T669 T668 prep of,RNAi
R568 T670 T671 amod key,components
R569 T671 T669 pobj components,of
R570 T672 T671 prep of,components
R571 T673 T675 det the,pathway
R572 T674 T675 compound TLR,pathway
R573 T675 T672 pobj pathway,of
R574 T676 T675 prep in,pathway
R575 T677 T678 amod human,monocytes
R576 T678 T676 pobj monocytes,in
R577 T679 T678 punct ",",monocytes
R578 T680 T678 prep including,monocytes
R579 T681 T684 det the,molecules
R580 T682 T684 amod downstream,molecules

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T143 7-16 Negative_regulation denotes silencing
T142 7-16 Negative_regulation denotes silencing
T141 7-16 Negative_regulation denotes silencing
T139 145-150 Protein denotes TRAF6
T138 134-139 Protein denotes IRAK1
T137 127-132 Protein denotes MyD88
T136 50-53 Protein denotes TLR
R23 T137 T141 themeOf MyD88,silencing
R24 T138 T142 themeOf IRAK1,silencing
R25 T139 T143 themeOf TRAF6,silencing

testone

Id Subject Object Predicate Lexical cue
T25 7-16 Negative_regulation denotes silencing
T18 145-150 Protein denotes TRAF6
T17 134-139 Protein denotes IRAK1
T16 127-132 Protein denotes MyD88

test3

Id Subject Object Predicate Lexical cue
T38 145-150 Protein denotes TRAF6
T37 134-139 Protein denotes IRAK1
T36 127-132 Protein denotes MyD88
T50 145-150 Protein denotes TRAF6
T49 134-139 Protein denotes IRAK1
T48 127-132 Protein denotes MyD88