PMC:3320587 / 9730-9989
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4402 | 257-258 | -RRB- | denotes | ) |
| T4401 | 253-257 | NN | denotes | CCR5 |
| T4400 | 244-252 | VB | denotes | utilizes |
| T4399 | 239-243 | WDT | denotes | that |
| T4398 | 231-238 | NN | denotes | subtype |
| T4397 | 229-230 | NN | denotes | B |
| T4396 | 228-229 | -LRB- | denotes | ( |
| T4395 | 219-227 | JJ | denotes | HIV-1Bal |
| T4394 | 216-218 | IN | denotes | of |
| T4393 | 209-215 | NN | denotes | region |
| T4392 | 195-208 | JJ | denotes | corresponding |
| T4391 | 191-194 | DT | denotes | the |
| T4390 | 186-190 | IN | denotes | with |
| T4389 | 180-185 | NN | denotes | clone |
| T4388 | 170-179 | JJ | denotes | molecular |
| T4387 | 168-169 | -RRB- | denotes | ) |
| T4386 | 163-168 | NN | denotes | CXCR4 |
| T4385 | 154-162 | VB | denotes | utilizes |
| T4384 | 149-153 | WDT | denotes | that |
| T4383 | 141-148 | NN | denotes | subtype |
| T4382 | 139-140 | NN | denotes | B |
| T4381 | 138-139 | -LRB- | denotes | ( |
| T4380 | 129-137 | NN | denotes | HIV-1Lai |
| T4379 | 125-128 | DT | denotes | the |
| T4378 | 122-124 | IN | denotes | of |
| T4377 | 114-121 | CD | denotes | 103–717 |
| T4376 | 108-113 | NN | denotes | acids |
| T4375 | 102-107 | NN | denotes | amino |
| T4374 | 96-101 | NN | denotes | gp160 |
| T4373 | 94-95 | -RRB- | denotes | ) |
| T4372 | 91-94 | NN | denotes | env |
| T4371 | 90-91 | -LRB- | denotes | ( |
| T4370 | 81-89 | NN | denotes | envelope |
| T4369 | 77-80 | DT | denotes | the |
| T4368 | 67-76 | VB | denotes | replacing |
| T4367 | 64-66 | IN | denotes | by |
| T4366 | 52-63 | VB | denotes | constructed |
| T4365 | 48-51 | VB | denotes | was |
| T4364 | 42-47 | NN | denotes | clone |
| T4363 | 32-41 | JJ | denotes | molecular |
| T4362 | 21-31 | JJ | denotes | infectious |
| T4361 | 4-20 | NN | denotes | HIV-1Lai/Bal-Env |
| T4360 | 0-3 | DT | denotes | The |
| R3415 | T4364 | T4360 | arg1Of | clone,The |
| R3416 | T4364 | T4361 | arg1Of | clone,HIV-1Lai/Bal-Env |
| R3417 | T4364 | T4362 | arg1Of | clone,infectious |
| R3418 | T4364 | T4363 | arg1Of | clone,molecular |
| R3419 | T4364 | T4365 | arg1Of | clone,was |
| R3420 | T4364 | T4366 | arg2Of | clone,constructed |
| R3422 | T4366 | T4365 | arg2Of | constructed,was |
| R3423 | T4366 | T4367 | arg1Of | constructed,by |
| R3424 | T4368 | T4367 | arg2Of | replacing,by |
| R3425 | T4372 | T4371 | arg2Of | env,( |
| R3426 | T4373 | T4371 | arg3Of | ),( |
| R3427 | T4376 | T4368 | arg2Of | acids,replacing |
| R3428 | T4376 | T4369 | arg1Of | acids,the |
| R3429 | T4376 | T4370 | arg1Of | acids,envelope |
| R3430 | T4376 | T4371 | arg1Of | acids,( |
| R3431 | T4376 | T4374 | arg1Of | acids,gp160 |
| R3432 | T4376 | T4375 | arg1Of | acids,amino |
| R3433 | T4376 | T4377 | arg1Of | acids,103–717 |
| R3434 | T4376 | T4378 | arg1Of | acids,of |
| R3435 | T4380 | T4381 | arg1Of | HIV-1Lai,( |
| R3436 | T4383 | T4381 | arg2Of | subtype,( |
| R3437 | T4383 | T4382 | arg1Of | subtype,B |
| R3438 | T4383 | T4384 | arg1Of | subtype,that |
| R3439 | T4383 | T4385 | arg1Of | subtype,utilizes |
| R3440 | T4386 | T4385 | arg2Of | CXCR4,utilizes |
| R3441 | T4387 | T4381 | arg3Of | ),( |
| R3442 | T4389 | T4378 | arg2Of | clone,of |
| R3443 | T4389 | T4379 | arg1Of | clone,the |
| R3444 | T4389 | T4380 | arg1Of | clone,HIV-1Lai |
| R3445 | T4389 | T4388 | arg1Of | clone,molecular |
| R3446 | T4389 | T4390 | arg1Of | clone,with |
| R3447 | T4393 | T4390 | arg2Of | region,with |
| R3448 | T4393 | T4391 | arg1Of | region,the |
| R3449 | T4393 | T4392 | arg1Of | region,corresponding |
| R3450 | T4393 | T4394 | arg1Of | region,of |
| R3451 | T4395 | T4394 | arg2Of | HIV-1Bal,of |
| R3452 | T4395 | T4396 | arg1Of | HIV-1Bal,( |
| R3453 | T4398 | T4396 | arg2Of | subtype,( |
| R3454 | T4398 | T4397 | arg1Of | subtype,B |
| R3455 | T4398 | T4399 | arg1Of | subtype,that |
| R3456 | T4398 | T4400 | arg1Of | subtype,utilizes |
| R3457 | T4401 | T4400 | arg2Of | CCR5,utilizes |
| R3458 | T4402 | T4396 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4329 | 253-257 | Protein | denotes | CCR5 |
| T4328 | 163-168 | Protein | denotes | CXCR4 |
| T4327 | 96-101 | Protein | denotes | gp160 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4452 | 253-257 | http://www.uniprot.org/uniprot/P51681 | denotes | CCR5 |
| T4451 | 91-94 | http://www.uniprot.org/uniprot/P04578 | denotes | env |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4330 | 163-168 | http://purl.obolibrary.org/obo/GO_0038147 | denotes | CXCR4 |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4331 | 163-168 | http://purl.obolibrary.org/obo/GO_0038147 | denotes | CXCR4 |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4332 | 81-89 | http://purl.obolibrary.org/obo/GO_0009274 | denotes | envelope |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T60 | 0-259 | Sentence | denotes | The HIV-1Lai/Bal-Env infectious molecular clone was constructed by replacing the envelope (env) gp160 amino acids 103–717 of the HIV-1Lai (B subtype that utilizes CXCR4) molecular clone with the corresponding region of HIV-1Bal (B subtype that utilizes CCR5). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4335 | 253-257 | Protein | denotes | CCR5 |
| T4334 | 163-168 | Protein | denotes | CXCR4 |
| T4333 | 96-101 | Protein | denotes | gp160 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4614 | 253-257 | Protein | denotes | CCR5 |
| T4613 | 163-168 | Protein | denotes | CXCR4 |
| T4612 | 96-101 | Protein | denotes | gp160 |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4463 | 253-257 | Protein | denotes | CCR5 |
| T4462 | 163-168 | Protein | denotes | CXCR4 |
| T4461 | 96-101 | Protein | denotes | gp160 |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4460 | 67-76 | Negative_regulation | denotes | replacing |
| T4459 | 253-257 | Protein | denotes | CCR5 |
| T4458 | 163-168 | Protein | denotes | CXCR4 |
| T4457 | 96-101 | Protein | denotes | gp160 |
| R3508 | T4457 | T4460 | themeOf | gp160,replacing |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4624 | 253-257 | Protein | denotes | CCR5 |
| T4621 | 163-168 | Protein | denotes | CXCR4 |
| T4620 | 96-113 | Entity | denotes | gp160 amino acids |
| T4618 | 96-101 | Protein | denotes | gp160 |
| T4616 | 91-94 | Protein | denotes | env |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4531 | 122-124 | IN | denotes | of |
| T4530 | 118-121 | CD | denotes | 717 |
| T4529 | 114-117 | CD | denotes | 103 |
| T4528 | 108-113 | NNS | denotes | acids |
| T4527 | 102-107 | JJ | denotes | amino |
| T4526 | 96-101 | CD | denotes | gp160 |
| T4525 | 94-95 | -RRB- | denotes | ) |
| T4524 | 91-94 | FW | denotes | env |
| T4523 | 90-91 | -LRB- | denotes | ( |
| T4522 | 81-89 | NN | denotes | envelope |
| T4521 | 77-80 | DT | denotes | the |
| T4520 | 67-76 | VBG | denotes | replacing |
| T4519 | 64-66 | IN | denotes | by |
| T4518 | 52-63 | VBN | denotes | constructed |
| T4517 | 48-51 | VBD | denotes | was |
| T4516 | 42-47 | NN | denotes | clone |
| T4515 | 32-41 | JJ | denotes | molecular |
| T4514 | 21-31 | JJ | denotes | infectious |
| T4513 | 13-20 | NNP | denotes | Bal-Env |
| T4512 | 12-13 | NN | denotes | / |
| T4511 | 4-12 | JJ | denotes | HIV-1Lai |
| T4510 | 0-3 | DT | denotes | The |
| T4556 | 258-259 | . | denotes | . |
| T4555 | 257-258 | -RRB- | denotes | ) |
| T4554 | 253-257 | NNP | denotes | CCR5 |
| T4553 | 244-252 | VBZ | denotes | utilizes |
| T4552 | 239-243 | WDT | denotes | that |
| T4551 | 231-238 | NN | denotes | subtype |
| T4550 | 229-230 | NNP | denotes | B |
| T4549 | 228-229 | -LRB- | denotes | ( |
| T4548 | 219-227 | JJ | denotes | HIV-1Bal |
| T4547 | 216-218 | IN | denotes | of |
| T4546 | 209-215 | NN | denotes | region |
| T4545 | 195-208 | JJ | denotes | corresponding |
| T4544 | 191-194 | DT | denotes | the |
| T4543 | 186-190 | IN | denotes | with |
| T4542 | 180-185 | NN | denotes | clone |
| T4541 | 170-179 | JJ | denotes | molecular |
| T4540 | 168-169 | -RRB- | denotes | ) |
| T4539 | 163-168 | NNP | denotes | CXCR4 |
| T4538 | 154-162 | VBZ | denotes | utilizes |
| T4537 | 149-153 | WDT | denotes | that |
| T4536 | 141-148 | NN | denotes | subtype |
| T4535 | 139-140 | NNP | denotes | B |
| T4534 | 138-139 | -LRB- | denotes | ( |
| T4533 | 129-137 | NNP | denotes | HIV-1Lai |
| T4532 | 125-128 | DT | denotes | the |
| R3536 | T4510 | T4516 | det | The,clone |
| R3537 | T4511 | T4516 | amod | HIV-1Lai,clone |
| R3538 | T4512 | T4513 | nsubj | /,Bal-Env |
| R3539 | T4513 | T4516 | nmod | Bal-Env,clone |
| R3540 | T4514 | T4516 | amod | infectious,clone |
| R3541 | T4515 | T4516 | amod | molecular,clone |
| R3542 | T4516 | T4518 | nsubjpass | clone,constructed |
| R3543 | T4517 | T4518 | auxpass | was,constructed |
| R3544 | T4518 | T4518 | ROOT | constructed,constructed |
| R3545 | T4519 | T4518 | prep | by,constructed |
| R3546 | T4520 | T4519 | pcomp | replacing,by |
| R3547 | T4521 | T4522 | det | the,envelope |
| R3548 | T4522 | T4520 | dobj | envelope,replacing |
| R3549 | T4523 | T4522 | punct | (,envelope |
| R3550 | T4524 | T4522 | appos | env,envelope |
| R3551 | T4525 | T4522 | punct | ),envelope |
| R3552 | T4526 | T4528 | nummod | gp160,acids |
| R3553 | T4527 | T4528 | compound | amino,acids |
| R3554 | T4528 | T4520 | dobj | acids,replacing |
| R3555 | T4529 | T4520 | npadvmod | 103,replacing |
| R3556 | T4530 | T4520 | dobj | 717,replacing |
| R3557 | T4531 | T4530 | prep | of,717 |
| R3558 | T4532 | T4533 | det | the,HIV-1Lai |
| R3559 | T4533 | T4542 | nmod | HIV-1Lai,clone |
| R3560 | T4534 | T4536 | punct | (,subtype |
| R3561 | T4535 | T4536 | compound | B,subtype |
| R3562 | T4536 | T4533 | appos | subtype,HIV-1Lai |
| R3563 | T4537 | T4538 | nsubj | that,utilizes |
| R3564 | T4538 | T4536 | relcl | utilizes,subtype |
| R3565 | T4539 | T4538 | dobj | CXCR4,utilizes |
| R3566 | T4540 | T4536 | punct | ),subtype |
| R3567 | T4541 | T4542 | amod | molecular,clone |
| R3568 | T4542 | T4531 | pobj | clone,of |
| R3569 | T4543 | T4520 | prep | with,replacing |
| R3570 | T4544 | T4546 | det | the,region |
| R3571 | T4545 | T4546 | amod | corresponding,region |
| R3572 | T4546 | T4543 | pobj | region,with |
| R3573 | T4547 | T4546 | prep | of,region |
| R3574 | T4548 | T4551 | amod | HIV-1Bal,subtype |
| R3575 | T4549 | T4551 | punct | (,subtype |
| R3576 | T4550 | T4551 | compound | B,subtype |
| R3577 | T4551 | T4547 | pobj | subtype,of |
| R3578 | T4552 | T4553 | nsubj | that,utilizes |
| R3579 | T4553 | T4551 | relcl | utilizes,subtype |
| R3580 | T4554 | T4553 | dobj | CCR5,utilizes |
| R3581 | T4555 | T4551 | punct | ),subtype |
| R3582 | T4556 | T4518 | punct | .,constructed |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4472 | 154-162 | Positive_regulation | denotes | utilizes |
| T4471 | 253-257 | Protein | denotes | CCR5 |
| T4470 | 163-168 | Protein | denotes | CXCR4 |
| T4469 | 96-101 | Protein | denotes | gp160 |
| T4468 | 91-94 | Protein | denotes | env |
| T4467 | 81-89 | Protein | denotes | envelope |
| R3509 | T4470 | T4472 | themeOf | CXCR4,utilizes |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4312 | 253-257 | Protein | denotes | CCR5 |
| T4311 | 163-168 | Protein | denotes | CXCR4 |
| T4310 | 96-101 | Protein | denotes | gp160 |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4318 | 253-257 | Protein | denotes | CCR5 |
| T4317 | 163-168 | Protein | denotes | CXCR4 |
| T4316 | 96-101 | Protein | denotes | gp160 |
| T4315 | 253-257 | Protein | denotes | CCR5 |
| T4314 | 163-168 | Protein | denotes | CXCR4 |
| T4313 | 96-101 | Protein | denotes | gp160 |