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PMC:3320587 / 9592-9989 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4402 395-396 -RRB- denotes )
T4401 391-395 NN denotes CCR5
T4400 382-390 VB denotes utilizes
T4399 377-381 WDT denotes that
T4398 369-376 NN denotes subtype
T4397 367-368 NN denotes B
T4396 366-367 -LRB- denotes (
T4395 357-365 JJ denotes HIV-1Bal
T4394 354-356 IN denotes of
T4393 347-353 NN denotes region
T4392 333-346 JJ denotes corresponding
T4391 329-332 DT denotes the
T4390 324-328 IN denotes with
T4389 318-323 NN denotes clone
T4388 308-317 JJ denotes molecular
T4387 306-307 -RRB- denotes )
T4386 301-306 NN denotes CXCR4
T4385 292-300 VB denotes utilizes
T4384 287-291 WDT denotes that
T4383 279-286 NN denotes subtype
T4382 277-278 NN denotes B
T4381 276-277 -LRB- denotes (
T4380 267-275 NN denotes HIV-1Lai
T4379 263-266 DT denotes the
T4378 260-262 IN denotes of
T4377 252-259 CD denotes 103–717
T4376 246-251 NN denotes acids
T4375 240-245 NN denotes amino
T4374 234-239 NN denotes gp160
T4373 232-233 -RRB- denotes )
T4372 229-232 NN denotes env
T4371 228-229 -LRB- denotes (
T4370 219-227 NN denotes envelope
T4369 215-218 DT denotes the
T4368 205-214 VB denotes replacing
T4367 202-204 IN denotes by
T4366 190-201 VB denotes constructed
T4365 186-189 VB denotes was
T4364 180-185 NN denotes clone
T4363 170-179 JJ denotes molecular
T4362 159-169 JJ denotes infectious
T4361 142-158 NN denotes HIV-1Lai/Bal-Env
T4360 138-141 DT denotes The
T4359 129-137 NNP denotes Program.
T4358 119-128 NNP denotes Reference
T4357 115-118 CC denotes and
T4356 107-114 NNP denotes Reagent
T4355 102-106 NNP denotes AIDS
T4354 98-101 NNP denotes NIH
T4353 94-97 DT denotes the
T4352 89-93 IN denotes from
T4351 80-88 VB denotes obtained
T4350 76-79 VB denotes was
T4349 67-75 NN denotes HIV-1Lai
T4348 64-66 IN denotes of
T4347 58-63 NN denotes clone
T4346 48-57 JJ denotes molecular
T4345 37-47 JJ denotes infectious
T4344 25-36 JJ denotes full-length
T4343 21-24 DT denotes the
T4342 12-20 VB denotes encoding
T4341 4-11 NN denotes plasmid
T4340 0-3 DT denotes The
R3395 T4341 T4340 arg1Of plasmid,The
R3396 T4341 T4342 arg1Of plasmid,encoding
R3397 T4341 T4350 arg1Of plasmid,was
R3398 T4341 T4351 arg2Of plasmid,obtained
R3399 T4347 T4342 arg2Of clone,encoding
R3400 T4347 T4343 arg1Of clone,the
R3401 T4347 T4344 arg1Of clone,full-length
R3402 T4347 T4345 arg1Of clone,infectious
R3403 T4347 T4346 arg1Of clone,molecular
R3404 T4347 T4348 arg1Of clone,of
R3405 T4349 T4348 arg2Of HIV-1Lai,of
R3406 T4351 T4350 arg2Of obtained,was
R3407 T4351 T4352 arg1Of obtained,from
R3408 T4356 T4354 arg1Of Reagent,NIH
R3409 T4356 T4355 arg1Of Reagent,AIDS
R3410 T4356 T4357 arg1Of Reagent,and
R3411 T4357 T4352 arg2Of and,from
R3412 T4357 T4353 arg1Of and,the
R3413 T4359 T4357 arg2Of Program.,and
R3414 T4359 T4358 arg1Of Program.,Reference
R3415 T4364 T4360 arg1Of clone,The
R3416 T4364 T4361 arg1Of clone,HIV-1Lai/Bal-Env
R3417 T4364 T4362 arg1Of clone,infectious
R3418 T4364 T4363 arg1Of clone,molecular
R3419 T4364 T4365 arg1Of clone,was
R3420 T4364 T4366 arg2Of clone,constructed
R3421 T4366 T4350 modOf constructed,was
R3422 T4366 T4365 arg2Of constructed,was
R3423 T4366 T4367 arg1Of constructed,by
R3424 T4368 T4367 arg2Of replacing,by
R3425 T4372 T4371 arg2Of env,(
R3426 T4373 T4371 arg3Of ),(
R3427 T4376 T4368 arg2Of acids,replacing
R3428 T4376 T4369 arg1Of acids,the
R3429 T4376 T4370 arg1Of acids,envelope
R3430 T4376 T4371 arg1Of acids,(
R3431 T4376 T4374 arg1Of acids,gp160
R3432 T4376 T4375 arg1Of acids,amino
R3433 T4376 T4377 arg1Of acids,103–717
R3434 T4376 T4378 arg1Of acids,of
R3435 T4380 T4381 arg1Of HIV-1Lai,(
R3436 T4383 T4381 arg2Of subtype,(
R3437 T4383 T4382 arg1Of subtype,B
R3438 T4383 T4384 arg1Of subtype,that
R3439 T4383 T4385 arg1Of subtype,utilizes
R3440 T4386 T4385 arg2Of CXCR4,utilizes
R3441 T4387 T4381 arg3Of ),(
R3442 T4389 T4378 arg2Of clone,of
R3443 T4389 T4379 arg1Of clone,the
R3444 T4389 T4380 arg1Of clone,HIV-1Lai
R3445 T4389 T4388 arg1Of clone,molecular
R3446 T4389 T4390 arg1Of clone,with
R3447 T4393 T4390 arg2Of region,with
R3448 T4393 T4391 arg1Of region,the
R3449 T4393 T4392 arg1Of region,corresponding
R3450 T4393 T4394 arg1Of region,of
R3451 T4395 T4394 arg2Of HIV-1Bal,of
R3452 T4395 T4396 arg1Of HIV-1Bal,(
R3453 T4398 T4396 arg2Of subtype,(
R3454 T4398 T4397 arg1Of subtype,B
R3455 T4398 T4399 arg1Of subtype,that
R3456 T4398 T4400 arg1Of subtype,utilizes
R3457 T4401 T4400 arg2Of CCR5,utilizes
R3458 T4402 T4396 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4329 391-395 Protein denotes CCR5
T4328 301-306 Protein denotes CXCR4
T4327 234-239 Protein denotes gp160

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4452 391-395 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T4451 229-232 http://www.uniprot.org/uniprot/P04578 denotes env

GO-BP

Id Subject Object Predicate Lexical cue
T4330 301-306 http://purl.obolibrary.org/obo/GO_0038147 denotes CXCR4

GO-MF

Id Subject Object Predicate Lexical cue
T4331 301-306 http://purl.obolibrary.org/obo/GO_0038147 denotes CXCR4

GO-CC

Id Subject Object Predicate Lexical cue
T4332 219-227 http://purl.obolibrary.org/obo/GO_0009274 denotes envelope

sentences

Id Subject Object Predicate Lexical cue
T4320 0-397 Sentence denotes The plasmid encoding the full-length infectious molecular clone of HIV-1Lai was obtained from the NIH AIDS Reagent and Reference Program. The HIV-1Lai/Bal-Env infectious molecular clone was constructed by replacing the envelope (env) gp160 amino acids 103–717 of the HIV-1Lai (B subtype that utilizes CXCR4) molecular clone with the corresponding region of HIV-1Bal (B subtype that utilizes CCR5).
T59 0-137 Sentence denotes The plasmid encoding the full-length infectious molecular clone of HIV-1Lai was obtained from the NIH AIDS Reagent and Reference Program.
T60 138-397 Sentence denotes The HIV-1Lai/Bal-Env infectious molecular clone was constructed by replacing the envelope (env) gp160 amino acids 103–717 of the HIV-1Lai (B subtype that utilizes CXCR4) molecular clone with the corresponding region of HIV-1Bal (B subtype that utilizes CCR5).

simple1

Id Subject Object Predicate Lexical cue
T4335 391-395 Protein denotes CCR5
T4334 301-306 Protein denotes CXCR4
T4333 234-239 Protein denotes gp160

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4614 391-395 Protein denotes CCR5
T4613 301-306 Protein denotes CXCR4
T4612 234-239 Protein denotes gp160

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4463 391-395 Protein denotes CCR5
T4462 301-306 Protein denotes CXCR4
T4461 234-239 Protein denotes gp160

DLUT931

Id Subject Object Predicate Lexical cue
T4460 205-214 Negative_regulation denotes replacing
T4459 391-395 Protein denotes CCR5
T4458 301-306 Protein denotes CXCR4
T4457 234-239 Protein denotes gp160
R3508 T4457 T4460 themeOf gp160,replacing

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4624 391-395 Protein denotes CCR5
T4621 301-306 Protein denotes CXCR4
T4620 234-251 Entity denotes gp160 amino acids
T4619 94-114 Entity denotes the NIH AIDS Reagent
T4618 234-239 Protein denotes gp160
T4616 229-232 Protein denotes env

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4531 260-262 IN denotes of
T4530 256-259 CD denotes 717
T4529 252-255 CD denotes 103
T4528 246-251 NNS denotes acids
T4527 240-245 JJ denotes amino
T4526 234-239 CD denotes gp160
T4525 232-233 -RRB- denotes )
T4524 229-232 FW denotes env
T4523 228-229 -LRB- denotes (
T4522 219-227 NN denotes envelope
T4521 215-218 DT denotes the
T4520 205-214 VBG denotes replacing
T4519 202-204 IN denotes by
T4518 190-201 VBN denotes constructed
T4517 186-189 VBD denotes was
T4516 180-185 NN denotes clone
T4515 170-179 JJ denotes molecular
T4514 159-169 JJ denotes infectious
T4513 151-158 NNP denotes Bal-Env
T4512 150-151 NN denotes /
T4511 142-150 JJ denotes HIV-1Lai
T4510 138-141 DT denotes The
T4509 136-137 . denotes .
T4508 129-136 NNP denotes Program
T4507 119-128 NNP denotes Reference
T4506 115-118 CC denotes and
T4505 107-114 NNP denotes Reagent
T4504 102-106 NNP denotes AIDS
T4503 98-101 NNP denotes NIH
T4502 94-97 DT denotes the
T4501 89-93 IN denotes from
T4500 80-88 VBN denotes obtained
T4499 76-79 VBD denotes was
T4498 67-75 NN denotes HIV-1Lai
T4497 64-66 IN denotes of
T4496 58-63 NN denotes clone
T4495 48-57 JJ denotes molecular
T4494 37-47 JJ denotes infectious
T4493 25-36 JJ denotes full-length
T4492 21-24 DT denotes the
T4491 12-20 VBG denotes encoding
T4490 4-11 JJ denotes plasmid
T4489 0-3 DT denotes The
T4556 396-397 . denotes .
T4555 395-396 -RRB- denotes )
T4554 391-395 NNP denotes CCR5
T4553 382-390 VBZ denotes utilizes
T4552 377-381 WDT denotes that
T4551 369-376 NN denotes subtype
T4550 367-368 NNP denotes B
T4549 366-367 -LRB- denotes (
T4548 357-365 JJ denotes HIV-1Bal
T4547 354-356 IN denotes of
T4546 347-353 NN denotes region
T4545 333-346 JJ denotes corresponding
T4544 329-332 DT denotes the
T4543 324-328 IN denotes with
T4542 318-323 NN denotes clone
T4541 308-317 JJ denotes molecular
T4540 306-307 -RRB- denotes )
T4539 301-306 NNP denotes CXCR4
T4538 292-300 VBZ denotes utilizes
T4537 287-291 WDT denotes that
T4536 279-286 NN denotes subtype
T4535 277-278 NNP denotes B
T4534 276-277 -LRB- denotes (
T4533 267-275 NNP denotes HIV-1Lai
T4532 263-266 DT denotes the
R3515 T4489 T4490 det The,plasmid
R3516 T4490 T4500 nsubjpass plasmid,obtained
R3517 T4491 T4490 acl encoding,plasmid
R3518 T4492 T4496 det the,clone
R3519 T4493 T4496 amod full-length,clone
R3520 T4494 T4496 amod infectious,clone
R3521 T4495 T4496 amod molecular,clone
R3522 T4496 T4491 dobj clone,encoding
R3523 T4497 T4496 prep of,clone
R3524 T4498 T4497 pobj HIV-1Lai,of
R3525 T4499 T4500 auxpass was,obtained
R3526 T4500 T4500 ROOT obtained,obtained
R3527 T4501 T4500 prep from,obtained
R3528 T4502 T4505 det the,Reagent
R3529 T4503 T4505 compound NIH,Reagent
R3530 T4504 T4505 compound AIDS,Reagent
R3531 T4505 T4501 pobj Reagent,from
R3532 T4506 T4505 cc and,Reagent
R3533 T4507 T4508 compound Reference,Program
R3534 T4508 T4505 conj Program,Reagent
R3535 T4509 T4500 punct .,obtained
R3536 T4510 T4516 det The,clone
R3537 T4511 T4516 amod HIV-1Lai,clone
R3538 T4512 T4513 nsubj /,Bal-Env
R3539 T4513 T4516 nmod Bal-Env,clone
R3540 T4514 T4516 amod infectious,clone
R3541 T4515 T4516 amod molecular,clone
R3542 T4516 T4518 nsubjpass clone,constructed
R3543 T4517 T4518 auxpass was,constructed
R3544 T4518 T4518 ROOT constructed,constructed
R3545 T4519 T4518 prep by,constructed
R3546 T4520 T4519 pcomp replacing,by
R3547 T4521 T4522 det the,envelope
R3548 T4522 T4520 dobj envelope,replacing
R3549 T4523 T4522 punct (,envelope
R3550 T4524 T4522 appos env,envelope
R3551 T4525 T4522 punct ),envelope
R3552 T4526 T4528 nummod gp160,acids
R3553 T4527 T4528 compound amino,acids
R3554 T4528 T4520 dobj acids,replacing
R3555 T4529 T4520 npadvmod 103,replacing
R3556 T4530 T4520 dobj 717,replacing
R3557 T4531 T4530 prep of,717
R3558 T4532 T4533 det the,HIV-1Lai
R3559 T4533 T4542 nmod HIV-1Lai,clone
R3560 T4534 T4536 punct (,subtype
R3561 T4535 T4536 compound B,subtype
R3562 T4536 T4533 appos subtype,HIV-1Lai
R3563 T4537 T4538 nsubj that,utilizes
R3564 T4538 T4536 relcl utilizes,subtype
R3565 T4539 T4538 dobj CXCR4,utilizes
R3566 T4540 T4536 punct ),subtype
R3567 T4541 T4542 amod molecular,clone
R3568 T4542 T4531 pobj clone,of
R3569 T4543 T4520 prep with,replacing
R3570 T4544 T4546 det the,region
R3571 T4545 T4546 amod corresponding,region
R3572 T4546 T4543 pobj region,with
R3573 T4547 T4546 prep of,region
R3574 T4548 T4551 amod HIV-1Bal,subtype
R3575 T4549 T4551 punct (,subtype
R3576 T4550 T4551 compound B,subtype
R3577 T4551 T4547 pobj subtype,of
R3578 T4552 T4553 nsubj that,utilizes
R3579 T4553 T4551 relcl utilizes,subtype
R3580 T4554 T4553 dobj CCR5,utilizes
R3581 T4555 T4551 punct ),subtype
R3582 T4556 T4518 punct .,constructed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4472 292-300 Positive_regulation denotes utilizes
T4471 391-395 Protein denotes CCR5
T4470 301-306 Protein denotes CXCR4
T4469 234-239 Protein denotes gp160
T4468 229-232 Protein denotes env
T4467 219-227 Protein denotes envelope
R3509 T4470 T4472 themeOf CXCR4,utilizes

testone

Id Subject Object Predicate Lexical cue
T4312 391-395 Protein denotes CCR5
T4311 301-306 Protein denotes CXCR4
T4310 234-239 Protein denotes gp160

test3

Id Subject Object Predicate Lexical cue
T4318 391-395 Protein denotes CCR5
T4317 301-306 Protein denotes CXCR4
T4316 234-239 Protein denotes gp160
T4315 391-395 Protein denotes CCR5
T4314 301-306 Protein denotes CXCR4
T4313 234-239 Protein denotes gp160