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PMC:3320587 / 9157-9556 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4172 397-398 -RRB- denotes ]
T4171 395-397 CD denotes 31
T4170 394-395 -LRB- denotes [
T4169 384-393 VB denotes described
T4168 373-383 RB denotes previously
T4167 370-372 IN denotes as
T4166 360-369 VB denotes performed
T4165 356-359 VB denotes was
T4164 343-355 NN denotes footprinting
T4163 341-342 CD denotes I
T4162 335-340 NN denotes DNase
T4161 322-334 JJ denotes Quantitative
T4160 319-320 -RRB- denotes )
T4159 300-319 NN denotes www.activemotif.com
T4158 298-299 -COMMA- denotes ,
T4157 293-298 NNP denotes Motif
T4156 286-292 JJ denotes Active
T4155 285-286 -LRB- denotes (
T4154 275-284 VB denotes purchased
T4153 270-274 VB denotes were
T4152 266-269 NN denotes p65
T4151 262-265 CC denotes and
T4150 258-261 NN denotes p50
T4149 246-257 JJ denotes Recombinant
T4148 243-244 -RRB- denotes )
T4147 237-243 NN denotes Qiagen
T4146 236-237 -LRB- denotes (
T4145 228-235 NN denotes agarose
T4144 221-227 NN denotes Ni-NTA
T4143 215-220 VB denotes using
T4142 204-214 NN denotes conditions
T4141 197-203 JJ denotes native
T4140 191-196 IN denotes under
T4139 182-190 VB denotes purified
T4138 178-181 CC denotes and
T4137 176-177 -RRB- denotes )
T4136 158-176 NN denotes www.stratagene.com
T4135 156-157 -COLON- denotes ;
T4134 146-156 NN denotes Stratagene
T4133 145-146 -LRB- denotes (
T4132 139-144 NN denotes cells
T4131 137-138 -RRB- denotes )
T4130 134-137 NN denotes DE3
T4129 133-134 -LRB- denotes (
T4128 129-133 NN denotes BL21
T4127 124-128 FW denotes coli
T4126 121-123 FW denotes E.
T4125 118-120 IN denotes in
T4124 108-117 VB denotes expressed
T4123 104-107 VB denotes was
T4122 100-103 NN denotes tag
T4121 96-99 PRP-DOLLAR- denotes His
T4120 93-95 CD denotes 6×
T4119 82-92 JJ denotes N-terminal
T4118 79-81 DT denotes an
T4117 74-78 IN denotes with
T4116 72-73 -RRB- denotes )
T4115 65-72 CD denotes 175–471
T4114 59-64 NN denotes acids
T4113 53-58 NN denotes amino
T4112 52-53 -LRB- denotes (
T4111 46-51 NN denotes NFAT5
T4110 34-45 JJ denotes Recombinant
T4109 21-33 NN denotes footprinting
T4108 19-20 CD denotes I
T4107 13-18 NN denotes DNase
T4106 0-12 JJ denotes Quantitative
R3240 T4109 T4106 arg1Of footprinting,Quantitative
R3241 T4109 T4107 arg1Of footprinting,DNase
R3242 T4109 T4108 arg1Of footprinting,I
R3243 T4111 T4110 arg1Of NFAT5,Recombinant
R3244 T4111 T4112 arg1Of NFAT5,(
R3245 T4111 T4117 arg1Of NFAT5,with
R3246 T4111 T4143 arg1Of NFAT5,using
R3247 T4114 T4112 arg2Of acids,(
R3248 T4114 T4113 arg1Of acids,amino
R3249 T4114 T4115 arg1Of acids,175–471
R3250 T4116 T4112 arg3Of ),(
R3251 T4120 T4117 arg2Of 6×,with
R3252 T4120 T4118 arg1Of 6×,an
R3253 T4120 T4119 arg1Of 6×,N-terminal
R3254 T4122 T4121 arg1Of tag,His
R3255 T4122 T4123 arg1Of tag,was
R3256 T4122 T4124 arg2Of tag,expressed
R3257 T4122 T4139 arg2Of tag,purified
R3258 T4124 T4125 arg1Of expressed,in
R3259 T4124 T4138 arg1Of expressed,and
R3260 T4128 T4126 arg1Of BL21,E.
R3261 T4128 T4127 arg1Of BL21,coli
R3262 T4128 T4129 arg1Of BL21,(
R3263 T4130 T4129 arg2Of DE3,(
R3264 T4131 T4129 arg3Of ),(
R3265 T4132 T4125 arg2Of cells,in
R3266 T4132 T4128 arg1Of cells,BL21
R3267 T4132 T4133 arg1Of cells,(
R3268 T4134 T4133 arg2Of Stratagene,(
R3269 T4134 T4135 arg1Of Stratagene,;
R3270 T4136 T4135 arg2Of www.stratagene.com,;
R3271 T4137 T4133 arg3Of ),(
R3272 T4138 T4123 arg2Of and,was
R3273 T4139 T4138 arg2Of purified,and
R3274 T4139 T4140 arg1Of purified,under
R3275 T4142 T4140 arg2Of conditions,under
R3276 T4142 T4141 arg1Of conditions,native
R3277 T4143 T4123 modOf using,was
R3278 T4145 T4143 arg2Of agarose,using
R3279 T4145 T4144 arg1Of agarose,Ni-NTA
R3280 T4145 T4146 arg1Of agarose,(
R3281 T4147 T4146 arg2Of Qiagen,(
R3282 T4148 T4146 arg3Of ),(
R3283 T4150 T4151 arg1Of p50,and
R3284 T4151 T4149 arg1Of and,Recombinant
R3285 T4151 T4153 arg1Of and,were
R3286 T4151 T4154 arg2Of and,purchased
R3287 T4152 T4151 arg2Of p65,and
R3288 T4154 T4153 arg2Of purchased,were
R3289 T4154 T4155 arg1Of purchased,(
R3290 T4157 T4155 arg2Of Motif,(
R3291 T4157 T4156 arg1Of Motif,Active
R3292 T4157 T4158 arg1Of Motif,","
R3293 T4159 T4158 arg2Of www.activemotif.com,","
R3294 T4160 T4155 arg3Of ),(
R3295 T4164 T4161 arg1Of footprinting,Quantitative
R3296 T4164 T4162 arg1Of footprinting,DNase
R3297 T4164 T4163 arg1Of footprinting,I
R3298 T4164 T4165 arg1Of footprinting,was
R3299 T4164 T4166 arg2Of footprinting,performed
R3300 T4166 T4165 arg2Of performed,was
R3301 T4166 T4167 arg1Of performed,as
R3302 T4169 T4168 arg1Of described,previously
R3303 T4171 T4167 arg2Of 31,as
R3304 T4171 T4169 arg1Of 31,described
R3305 T4171 T4170 arg2Of 31,[
R3306 T4172 T4170 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4094 335-342 Protein denotes DNase I
T4093 266-269 Protein denotes p65
T4092 258-261 Protein denotes p50
T4091 46-51 Protein denotes NFAT5
T4090 13-20 Protein denotes DNase I

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4176 266-269 http://www.uniprot.org/uniprot/P21579 denotes p65
T4175 266-269 http://www.uniprot.org/uniprot/Q04206 denotes p65
T4174 258-261 http://www.uniprot.org/uniprot/P19838 denotes p50
T4173 46-51 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-CC

Id Subject Object Predicate Lexical cue
T4095 139-144 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T4083 322-399 Sentence denotes Quantitative DNase I footprinting was performed as previously described [31].
T4082 246-321 Sentence denotes Recombinant p50 and p65 were purchased (Active Motif, www.activemotif.com).
T4081 34-245 Sentence denotes Recombinant NFAT5 (amino acids 175–471) with an N-terminal 6× His tag was expressed in E. coli BL21(DE3) cells (Stratagene; www.stratagene.com) and purified under native conditions using Ni-NTA agarose (Qiagen).
T4080 0-33 Sentence denotes Quantitative DNase I footprinting
T54 0-33 Sentence denotes Quantitative DNase I footprinting
T55 34-245 Sentence denotes Recombinant NFAT5 (amino acids 175–471) with an N-terminal 6× His tag was expressed in E. coli BL21(DE3) cells (Stratagene; www.stratagene.com) and purified under native conditions using Ni-NTA agarose (Qiagen).
T56 246-321 Sentence denotes Recombinant p50 and p65 were purchased (Active Motif, www.activemotif.com).
T57 322-399 Sentence denotes Quantitative DNase I footprinting was performed as previously described [31].

simple1

Id Subject Object Predicate Lexical cue
T4105 335-342 Protein denotes DNase I
T4104 266-269 Protein denotes p65
T4103 258-261 Protein denotes p50
T4102 46-51 Protein denotes NFAT5
T4101 13-20 Protein denotes DNase I

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4290 108-117 Gene_expression denotes expressed
T4289 335-342 Protein denotes DNase I
T4288 266-269 Protein denotes p65
T4287 258-261 Protein denotes p50
T4286 46-51 Protein denotes NFAT5
T4285 13-20 Protein denotes DNase I
R3389 T4286 T4290 themeOf NFAT5,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4188 108-117 Gene_expression denotes expressed
T4187 335-342 Protein denotes DNase I
T4186 266-269 Protein denotes p65
T4185 258-261 Protein denotes p50
T4184 46-51 Protein denotes NFAT5
T4183 13-20 Protein denotes DNase I
R3308 T4184 T4188 themeOf NFAT5,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T4182 108-117 Gene_expression denotes expressed
T4181 335-342 Protein denotes DNase I
T4180 266-269 Protein denotes p65
T4179 258-261 Protein denotes p50
T4178 46-51 Protein denotes NFAT5
T4177 13-20 Protein denotes DNase I
R3307 T4178 T4182 themeOf NFAT5,expressed

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4301 246-284 Binding denotes Recombinant p50 and p65 were purchased
T4300 221-244 Entity denotes Ni-NTA agarose (Qiagen)
T4299 13-20 Protein denotes DNase I
T4298 34-51 Protein denotes Recombinant NFAT5
T4297 224-227 Entity denotes NTA
T4296 266-269 Protein denotes p65
T4295 246-261 Protein denotes Recombinant p50
T4294 322-398 Protein denotes Quantitative DNase I footprinting was performed as previously described [31]
T4293 79-92 Entity denotes an N-terminal
T4292 53-64 Entity denotes amino acids
T4291 121-144 Entity denotes E. coli BL21(DE3) cells
R3390 T4295 T4301 themeOf Recombinant p50,Recombinant p50 and p65 were purchased
R3391 T4296 T4301 themeOf p65,Recombinant p50 and p65 were purchased

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4216 21-33 VBG denotes footprinting
T4215 19-20 PRP denotes I
T4214 13-18 NNP denotes DNase
T4213 0-12 JJ denotes Quantitative
T4237 129-133 NNP denotes BL21
T4236 124-128 NNS denotes coli
T4235 121-123 NNP denotes E.
T4234 118-120 IN denotes in
T4233 108-117 VBN denotes expressed
T4232 104-107 VBD denotes was
T4231 100-103 NN denotes tag
T4230 96-99 PRP$ denotes His
T4229 94-95 NN denotes ×
T4228 93-94 CD denotes 6
T4227 82-92 JJ denotes N-terminal
T4226 79-81 DT denotes an
T4225 74-78 IN denotes with
T4224 72-73 -RRB- denotes )
T4223 69-72 CD denotes 471
T4222 65-68 CD denotes 175
T4221 59-64 NNS denotes acids
T4220 53-58 JJ denotes amino
T4219 52-53 -LRB- denotes (
T4218 46-51 NNS denotes NFAT5
T4217 34-45 JJ denotes Recombinant
T4275 343-355 VBG denotes footprinting
T4274 341-342 PRP denotes I
T4284 398-399 . denotes .
T4283 397-398 NNP denotes ]
T4282 395-397 CD denotes 31
T4281 394-395 NNP denotes [
T4280 384-393 VBN denotes described
T4279 373-383 RB denotes previously
T4278 370-372 IN denotes as
T4277 360-369 VBN denotes performed
T4276 356-359 VBD denotes was
T4273 335-340 NNP denotes DNase
T4272 322-334 JJ denotes Quantitative
T4271 320-321 . denotes .
T4270 319-320 -RRB- denotes )
T4269 300-319 NN denotes www.activemotif.com
T4268 298-299 , denotes ,
T4267 293-298 NN denotes Motif
T4266 286-292 JJ denotes Active
T4265 285-286 -LRB- denotes (
T4264 275-284 VBN denotes purchased
T4263 270-274 VBD denotes were
T4262 266-269 NNS denotes p65
T4261 262-265 CC denotes and
T4260 258-261 NN denotes p50
T4259 246-257 JJ denotes Recombinant
T4258 244-245 . denotes .
T4257 243-244 -RRB- denotes )
T4256 237-243 NNP denotes Qiagen
T4255 236-237 -LRB- denotes (
T4254 228-235 NN denotes agarose
T4253 221-227 JJ denotes Ni-NTA
T4252 215-220 VBG denotes using
T4251 204-214 NNS denotes conditions
T4250 197-203 JJ denotes native
T4249 191-196 IN denotes under
T4248 182-190 VBN denotes purified
T4247 178-181 CC denotes and
T4246 176-177 -RRB- denotes )
T4245 158-176 NN denotes www.stratagene.com
T4244 156-157 : denotes ;
T4243 146-156 NNP denotes Stratagene
T4242 145-146 -LRB- denotes (
T4241 139-144 NNS denotes cells
T4240 137-138 -RRB- denotes )
T4239 134-137 NNP denotes DE3
T4238 133-134 -LRB- denotes (
R3317 T4213 T4214 compound Quantitative,DNase
R3318 T4214 T4214 ROOT DNase,DNase
R3320 T4216 T4214 acl footprinting,DNase
R3321 T4217 T4218 amod Recombinant,NFAT5
R3322 T4218 T4216 dobj NFAT5,footprinting
R3323 T4219 T4218 punct (,NFAT5
R3324 T4220 T4221 compound amino,acids
R3325 T4221 T4218 appos acids,NFAT5
R3326 T4222 T4218 parataxis 175,NFAT5
R3327 T4223 T4218 appos 471,NFAT5
R3328 T4224 T4218 punct ),NFAT5
R3329 T4225 T4216 prep with,footprinting
R3330 T4226 T4229 det an,×
R3331 T4227 T4229 amod N-terminal,×
R3332 T4228 T4229 nummod 6,×
R3333 T4229 T4225 pobj ×,with
R3334 T4230 T4231 poss His,tag
R3335 T4231 T4233 nsubjpass tag,expressed
R3336 T4232 T4233 auxpass was,expressed
R3337 T4233 T4233 ROOT expressed,expressed
R3338 T4234 T4233 prep in,expressed
R3339 T4235 T4237 compound E.,BL21
R3340 T4236 T4237 compound coli,BL21
R3341 T4237 T4234 pobj BL21,in
R3342 T4238 T4237 punct (,BL21
R3343 T4239 T4237 appos DE3,BL21
R3344 T4240 T4237 punct ),BL21
R3345 T4241 T4234 pobj cells,in
R3346 T4242 T4243 punct (,Stratagene
R3347 T4243 T4241 appos Stratagene,cells
R3348 T4244 T4245 punct ;,www.stratagene.com
R3349 T4245 T4241 conj www.stratagene.com,cells
R3350 T4246 T4245 punct ),www.stratagene.com
R3351 T4247 T4245 cc and,www.stratagene.com
R3352 T4248 T4241 acl purified,cells
R3353 T4249 T4248 prep under,purified
R3354 T4250 T4251 amod native,conditions
R3355 T4251 T4249 pobj conditions,under
R3356 T4252 T4251 acl using,conditions
R3357 T4253 T4254 amod Ni-NTA,agarose
R3358 T4254 T4252 dobj agarose,using
R3359 T4255 T4254 punct (,agarose
R3360 T4256 T4254 appos Qiagen,agarose
R3361 T4257 T4254 punct ),agarose
R3362 T4258 T4233 punct .,expressed
R3363 T4259 T4260 amod Recombinant,p50
R3364 T4260 T4264 nsubjpass p50,purchased
R3365 T4261 T4260 cc and,p50
R3366 T4262 T4260 conj p65,p50
R3367 T4263 T4264 auxpass were,purchased
R3368 T4264 T4264 ROOT purchased,purchased
R3369 T4265 T4269 punct (,www.activemotif.com
R3370 T4266 T4267 amod Active,Motif
R3371 T4267 T4269 nmod Motif,www.activemotif.com
R3372 T4268 T4269 punct ",",www.activemotif.com
R3373 T4269 T4264 parataxis www.activemotif.com,purchased
R3374 T4270 T4269 punct ),www.activemotif.com
R3375 T4271 T4264 punct .,purchased
R3376 T4272 T4273 compound Quantitative,DNase
R3377 T4273 T4277 nsubjpass DNase,performed
R3378 T4274 T4277 nsubjpass I,performed
R3379 T4275 T4277 nsubjpass footprinting,performed
R3380 T4276 T4277 auxpass was,performed
R3381 T4277 T4277 ROOT performed,performed
R3382 T4278 T4280 mark as,described
R3383 T4279 T4280 advmod previously,described
R3384 T4280 T4277 advcl described,performed
R3385 T4281 T4283 nmod [,]
R3386 T4282 T4283 nummod 31,]
R3387 T4283 T4280 dobj ],described
R3388 T4284 T4277 punct .,performed
R3319 T4215 T4216 nsubj I,footprinting

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4203 335-342 Protein denotes DNase I
T4202 246-269 Protein denotes Recombinant p50 and p65
T4201 108-117 Gene_expression denotes expressed
T4200 108-117 Gene_expression denotes expressed
T4199 100-103 Protein denotes tag
T4198 93-95 Protein denotes 6×
T4195 13-20 Protein denotes DNase I
T4197 34-51 Protein denotes Recombinant NFAT5
T4196 21-33 Localization denotes footprinting
R3311 T4195 T4196 themeOf DNase I,footprinting
R3312 T4197 T4200 themeOf Recombinant NFAT5,expressed
R3313 T4199 T4201 themeOf tag,expressed

testone

Id Subject Object Predicate Lexical cue
T4069 108-117 Gene_expression denotes expressed
T4068 335-342 Protein denotes DNase I
T4067 266-269 Protein denotes p65
T4066 258-261 Protein denotes p50
T4065 46-51 Protein denotes NFAT5
T4064 13-20 Protein denotes DNase I
R3237 T4065 T4069 themeOf NFAT5,expressed

test3

Id Subject Object Predicate Lexical cue
T4079 335-342 Protein denotes DNase I
T4078 266-269 Protein denotes p65
T4077 258-261 Protein denotes p50
T4076 46-51 Protein denotes NFAT5
T4075 13-20 Protein denotes DNase I
T4074 335-342 Protein denotes DNase I
T4073 266-269 Protein denotes p65
T4072 258-261 Protein denotes p50
T4071 46-51 Protein denotes NFAT5
T4070 13-20 Protein denotes DNase I