PMC:3320587 / 8425-8694
Annnotations
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 22496647-11909956-98010786 | 198-200 | 11909956 | denotes | 34 |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3723 | 260-263 | NN | denotes | LTR |
| T3722 | 254-259 | NN | denotes | µg/ml |
| T3721 | 250-253 | CD | denotes | 0.3 |
| T3720 | 245-249 | IN | denotes | with |
| T3719 | 233-244 | VB | denotes | transfected |
| T3718 | 228-232 | VB | denotes | were |
| T3717 | 226-227 | -RRB- | denotes | ) |
| T3716 | 216-226 | NN | denotes | 0.8×106/ml |
| T3715 | 215-216 | -LRB- | denotes | ( |
| T3714 | 209-214 | NN | denotes | cells |
| T3713 | 203-208 | NN | denotes | THP-1 |
| T3712 | 200-201 | -RRB- | denotes | ] |
| T3711 | 198-200 | CD | denotes | 34 |
| T3710 | 197-198 | -LRB- | denotes | [ |
| T3709 | 189-196 | NN | denotes | methods |
| T3708 | 177-188 | NN | denotes | mutagenesis |
| T3707 | 167-176 | JJ | denotes | PCR-based |
| T3706 | 158-166 | JJ | denotes | standard |
| T3705 | 155-157 | IN | denotes | by |
| T3704 | 147-154 | VB | denotes | created |
| T3703 | 143-146 | VB | denotes | was |
| T3702 | 135-142 | NN | denotes | plasmid |
| T3701 | 126-134 | NN | denotes | reporter |
| T3700 | 124-125 | -RRB- | denotes | ) |
| T3699 | 118-124 | NN | denotes | N5-Mut |
| T3698 | 117-118 | -LRB- | denotes | ( |
| T3697 | 105-116 | JJ | denotes | site-mutant |
| T3696 | 97-104 | NN | denotes | binding |
| T3695 | 91-96 | NN | denotes | NFAT5 |
| T3694 | 82-90 | NN | denotes | HIV-1Lai |
| T3693 | 78-81 | DT | denotes | The |
| T3692 | 75-76 | -RRB- | denotes | ) |
| T3691 | 52-75 | NN | denotes | www.ebi.ac.uk/clustalw/ |
| T3690 | 51-52 | -LRB- | denotes | ( |
| T3689 | 49-50 | NNP | denotes | W |
| T3688 | 41-48 | NN | denotes | CLUSTAL |
| T3687 | 36-40 | IN | denotes | with |
| T3686 | 27-35 | VB | denotes | analyzed |
| T3685 | 23-26 | CC | denotes | and |
| T3684 | 15-22 | VB | denotes | aligned |
| T3683 | 10-14 | VB | denotes | were |
| T3682 | 0-9 | NN | denotes | Sequences |
| R2901 | T3682 | T3683 | arg1Of | Sequences,were |
| R2902 | T3682 | T3684 | arg2Of | Sequences,aligned |
| R2903 | T3682 | T3686 | arg2Of | Sequences,analyzed |
| R2904 | T3684 | T3685 | arg1Of | aligned,and |
| R2905 | T3685 | T3683 | arg2Of | and,were |
| R2906 | T3686 | T3685 | arg2Of | analyzed,and |
| R2907 | T3686 | T3687 | arg1Of | analyzed,with |
| R2908 | T3689 | T3687 | arg2Of | W,with |
| R2909 | T3689 | T3688 | arg1Of | W,CLUSTAL |
| R2910 | T3689 | T3690 | arg1Of | W,( |
| R2911 | T3691 | T3690 | arg2Of | www.ebi.ac.uk/clustalw/,( |
| R2912 | T3692 | T3690 | arg3Of | ),( |
| R2913 | T3699 | T3698 | arg2Of | N5-Mut,( |
| R2914 | T3700 | T3698 | arg3Of | ),( |
| R2915 | T3702 | T3693 | arg1Of | plasmid,The |
| R2916 | T3702 | T3694 | arg1Of | plasmid,HIV-1Lai |
| R2917 | T3702 | T3695 | arg1Of | plasmid,NFAT5 |
| R2918 | T3702 | T3696 | arg1Of | plasmid,binding |
| R2919 | T3702 | T3697 | arg1Of | plasmid,site-mutant |
| R2920 | T3702 | T3698 | arg1Of | plasmid,( |
| R2921 | T3702 | T3701 | arg1Of | plasmid,reporter |
| R2922 | T3702 | T3703 | arg1Of | plasmid,was |
| R2923 | T3702 | T3704 | arg2Of | plasmid,created |
| R2924 | T3704 | T3703 | arg2Of | created,was |
| R2925 | T3709 | T3704 | arg1Of | methods,created |
| R2926 | T3709 | T3705 | arg2Of | methods,by |
| R2927 | T3709 | T3706 | arg1Of | methods,standard |
| R2928 | T3709 | T3707 | arg1Of | methods,PCR-based |
| R2929 | T3709 | T3708 | arg1Of | methods,mutagenesis |
| R2930 | T3709 | T3710 | arg1Of | methods,[ |
| R2931 | T3711 | T3710 | arg2Of | 34,[ |
| R2932 | T3712 | T3710 | arg3Of | ],[ |
| R2933 | T3714 | T3713 | arg1Of | cells,THP-1 |
| R2934 | T3714 | T3715 | arg1Of | cells,( |
| R2935 | T3714 | T3718 | arg1Of | cells,were |
| R2936 | T3714 | T3719 | arg2Of | cells,transfected |
| R2938 | T3716 | T3715 | arg2Of | 0.8×106/ml,( |
| R2939 | T3717 | T3715 | arg3Of | ),( |
| R2940 | T3719 | T3718 | arg2Of | transfected,were |
| R2941 | T3719 | T3720 | arg1Of | transfected,with |
| R2943 | T3721 | T3722 | arg1Of | 0.3,µg/ml |
| R2944 | T3723 | T3721 | arg1Of | LTR,0.3 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3798 | 91-96 | http://www.uniprot.org/uniprot/O94916 | denotes | NFAT5 |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3601 | 97-104 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3602 | 209-214 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3588 | 78-202 | Sentence | denotes | The HIV-1Lai NFAT5 binding site-mutant (N5-Mut) reporter plasmid was created by standard PCR-based mutagenesis methods [34]. |
| T3587 | 0-77 | Sentence | denotes | Sequences were aligned and analyzed with CLUSTAL W (www.ebi.ac.uk/clustalw/). |
| T49 | 0-77 | Sentence | denotes | Sequences were aligned and analyzed with CLUSTAL W (www.ebi.ac.uk/clustalw/). |
| T50 | 78-202 | Sentence | denotes | The HIV-1Lai NFAT5 binding site-mutant (N5-Mut) reporter plasmid was created by standard PCR-based mutagenesis methods [34]. |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4052 | 118-124 | Entity | denotes | N5-Mut |
| T4051 | 91-125 | Entity | denotes | NFAT5 binding site-mutant (N5-Mut) |
| T4048 | 118-124 | Protein | denotes | N5-Mut |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3957 | 260-263 | NNP | denotes | LTR |
| T3956 | 257-259 | NN | denotes | ml |
| T3955 | 256-257 | NN | denotes | / |
| T3954 | 254-256 | NN | denotes | µg |
| T3953 | 250-253 | CD | denotes | 0.3 |
| T3952 | 245-249 | IN | denotes | with |
| T3951 | 233-244 | VBN | denotes | transfected |
| T3950 | 228-232 | VBD | denotes | were |
| T3949 | 226-227 | -RRB- | denotes | ) |
| T3948 | 220-226 | CD | denotes | 106/ml |
| T3947 | 219-220 | NN | denotes | × |
| T3946 | 216-219 | CD | denotes | 0.8 |
| T3945 | 215-216 | -LRB- | denotes | ( |
| T3944 | 209-214 | NNS | denotes | cells |
| T3943 | 203-208 | CD | denotes | THP-1 |
| T3942 | 201-202 | . | denotes | . |
| T3941 | 200-201 | NNP | denotes | ] |
| T3940 | 198-200 | CD | denotes | 34 |
| T3939 | 197-198 | NNP | denotes | [ |
| T3938 | 189-196 | NNS | denotes | methods |
| T3937 | 177-188 | NN | denotes | mutagenesis |
| T3936 | 167-176 | JJ | denotes | PCR-based |
| T3935 | 158-166 | JJ | denotes | standard |
| T3934 | 155-157 | IN | denotes | by |
| T3933 | 147-154 | VBN | denotes | created |
| T3932 | 143-146 | VBD | denotes | was |
| T3931 | 135-142 | NN | denotes | plasmid |
| T3930 | 126-134 | NN | denotes | reporter |
| T3929 | 124-125 | -RRB- | denotes | ) |
| T3928 | 118-124 | JJ | denotes | N5-Mut |
| T3927 | 117-118 | -LRB- | denotes | ( |
| T3926 | 105-116 | JJ | denotes | site-mutant |
| T3925 | 97-104 | JJ | denotes | binding |
| T3924 | 91-96 | CD | denotes | NFAT5 |
| T3923 | 82-90 | JJ | denotes | HIV-1Lai |
| T3922 | 78-81 | DT | denotes | The |
| T3921 | 76-77 | . | denotes | . |
| T3920 | 75-76 | -RRB- | denotes | ) |
| T3919 | 52-75 | NNP | denotes | www.ebi.ac.uk/clustalw/ |
| T3918 | 51-52 | -LRB- | denotes | ( |
| T3917 | 49-50 | NNP | denotes | W |
| T3916 | 41-48 | NNP | denotes | CLUSTAL |
| T3915 | 36-40 | IN | denotes | with |
| T3914 | 27-35 | VBN | denotes | analyzed |
| T3913 | 23-26 | CC | denotes | and |
| T3912 | 15-22 | VBN | denotes | aligned |
| T3911 | 10-14 | VBD | denotes | were |
| T3910 | 0-9 | NNS | denotes | Sequences |
| R3105 | T3910 | T3912 | nsubjpass | Sequences,aligned |
| R3106 | T3911 | T3912 | auxpass | were,aligned |
| R3107 | T3912 | T3912 | ROOT | aligned,aligned |
| R3108 | T3913 | T3912 | cc | and,aligned |
| R3109 | T3914 | T3912 | conj | analyzed,aligned |
| R3110 | T3915 | T3914 | prep | with,analyzed |
| R3111 | T3916 | T3917 | compound | CLUSTAL,W |
| R3112 | T3917 | T3915 | pobj | W,with |
| R3113 | T3918 | T3917 | punct | (,W |
| R3114 | T3919 | T3917 | appos | www.ebi.ac.uk/clustalw/,W |
| R3115 | T3920 | T3917 | punct | ),W |
| R3116 | T3921 | T3912 | punct | .,aligned |
| R3117 | T3922 | T3931 | det | The,plasmid |
| R3118 | T3923 | T3931 | amod | HIV-1Lai,plasmid |
| R3119 | T3924 | T3926 | nummod | NFAT5,site-mutant |
| R3120 | T3925 | T3926 | amod | binding,site-mutant |
| R3121 | T3926 | T3931 | amod | site-mutant,plasmid |
| R3122 | T3927 | T3930 | punct | (,reporter |
| R3123 | T3928 | T3930 | amod | N5-Mut,reporter |
| R3124 | T3929 | T3930 | punct | ),reporter |
| R3125 | T3930 | T3931 | compound | reporter,plasmid |
| R3126 | T3931 | T3933 | nsubjpass | plasmid,created |
| R3127 | T3932 | T3933 | auxpass | was,created |
| R3128 | T3933 | T3933 | ROOT | created,created |
| R3129 | T3934 | T3933 | agent | by,created |
| R3130 | T3935 | T3938 | amod | standard,methods |
| R3131 | T3936 | T3938 | amod | PCR-based,methods |
| R3132 | T3937 | T3938 | compound | mutagenesis,methods |
| R3133 | T3938 | T3934 | pobj | methods,by |
| R3134 | T3939 | T3941 | nmod | [,] |
| R3135 | T3940 | T3941 | nummod | 34,] |
| R3136 | T3941 | T3938 | appos | ],methods |
| R3137 | T3942 | T3933 | punct | .,created |
| R3138 | T3943 | T3944 | nummod | THP-1,cells |
| R3139 | T3944 | T3951 | nsubjpass | cells,transfected |
| R3140 | T3945 | T3947 | punct | (,× |
| R3141 | T3946 | T3947 | nummod | 0.8,× |
| R3142 | T3947 | T3944 | appos | ×,cells |
| R3143 | T3948 | T3947 | nummod | 106/ml,× |
| R3144 | T3949 | T3947 | punct | ),× |
| R3145 | T3950 | T3951 | auxpass | were,transfected |
| R3146 | T3951 | T3951 | ROOT | transfected,transfected |
| R3147 | T3952 | T3951 | prep | with,transfected |
| R3148 | T3953 | T3954 | nummod | 0.3,µg |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3819 | 91-96 | Protein | denotes | NFAT5 |