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PMC:3320587 / 7902-8182 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-14734781-98010785 68-70 14734781 denotes 33

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3637 275-276 -COMMA- denotes ,
T3636 274-275 -RRB- denotes )
T3635 267-274 NN denotes subtype
T3634 265-266 NN denotes B
T3633 264-265 -LRB- denotes (
T3632 255-263 JJ denotes HIV-1Bal
T3631 253-254 -COMMA- denotes ,
T3630 245-253 NN denotes HIV-1Lai
T3629 242-244 IN denotes of
T3628 237-241 NN denotes site
T3627 226-236 NN denotes initiation
T3626 210-225 JJ denotes transcriptional
T3625 206-209 DT denotes the
T3624 203-205 TO denotes to
T3623 194-202 JJ denotes relative
T3622 190-193 CD denotes +64
T3621 187-189 TO denotes to
T3620 182-186 CD denotes −208
T3619 170-181 NN denotes nucleotides
T3618 160-169 VB denotes inserting
T3617 157-159 IN denotes by
T3616 145-156 VB denotes constructed
T3615 140-144 VB denotes were
T3614 131-139 NN denotes plasmids
T3613 122-130 NN denotes reporter
T3612 118-121 NN denotes LTR
T3611 112-117 NN denotes assay
T3610 103-111 NN denotes reporter
T3609 99-102 CC denotes and
T3608 86-98 NN denotes construction
T3607 78-85 NN denotes plasmid
T3606 74-77 NN denotes LTR
T3517 70-71 -RRB- denotes ]
T3516 68-70 CD denotes 33
T3515 67-68 -LRB- denotes [
T3514 60-66 IN denotes before
T3513 50-59 VB denotes described
T3512 47-49 IN denotes as
T3511 36-46 NN denotes laboratory
T3510 32-35 PRP-DOLLAR- denotes our
T3509 29-31 IN denotes in
T3508 20-28 VB denotes isolated
T3507 16-19 VB denotes was
T3506 6-15 NN denotes HIV-1KR25
R2758 T3506 T3507 arg1Of HIV-1KR25,was
R2759 T3506 T3508 arg2Of HIV-1KR25,isolated
R2761 T3508 T3507 arg2Of isolated,was
R2762 T3508 T3509 arg1Of isolated,in
R2763 T3511 T3509 arg2Of laboratory,in
R2764 T3511 T3510 arg1Of laboratory,our
R2765 T3511 T3512 arg1Of laboratory,as
R2766 T3513 T3512 arg2Of described,as
R2767 T3513 T3514 arg1Of described,before
R2768 T3516 T3514 arg2Of 33,before
R2769 T3516 T3515 arg2Of 33,[
R2770 T3517 T3515 arg3Of ],[
R2825 T3608 T3609 arg1Of construction,and
R2826 T3610 T3609 arg2Of reporter,and
R2827 T3611 T3606 arg1Of assay,LTR
R2828 T3611 T3607 arg1Of assay,plasmid
R2829 T3611 T3608 arg1Of assay,construction
R2830 T3611 T3610 arg1Of assay,reporter
R2831 T3614 T3612 arg1Of plasmids,LTR
R2832 T3614 T3613 arg1Of plasmids,reporter
R2833 T3614 T3615 arg1Of plasmids,were
R2834 T3614 T3616 arg2Of plasmids,constructed
R2835 T3616 T3615 arg2Of constructed,were
R2836 T3616 T3617 arg1Of constructed,by
R2837 T3618 T3617 arg2Of inserting,by
R2839 T3619 T3620 arg1Of nucleotides,−208
R2840 T3619 T3637 arg1Of nucleotides,","
R2841 T3620 T3621 arg1Of −208,to
R2842 T3622 T3621 arg2Of +64,to
R2843 T3622 T3623 arg1Of +64,relative
R2844 T3623 T3624 arg1Of relative,to
R2845 T3628 T3624 arg2Of site,to
R2846 T3628 T3625 arg1Of site,the
R2847 T3628 T3626 arg1Of site,transcriptional
R2848 T3628 T3627 arg1Of site,initiation
R2849 T3628 T3629 arg1Of site,of
R2850 T3628 T3631 arg1Of site,","
R2851 T3630 T3629 arg2Of HIV-1Lai,of
R2852 T3632 T3631 arg2Of HIV-1Bal,","
R2853 T3632 T3633 arg1Of HIV-1Bal,(
R2854 T3635 T3633 arg2Of subtype,(
R2855 T3635 T3634 arg1Of subtype,B
R2856 T3636 T3633 arg3Of ),(
R2857 T3637 T3618 arg2Of ",",inserting

GO-BP

Id Subject Object Predicate Lexical cue
T3599 210-225 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional

sentences

Id Subject Object Predicate Lexical cue
T3585 74-117 Sentence denotes LTR plasmid construction and reporter assay
T46 6-72 Sentence denotes HIV-1KR25 was isolated in our laboratory as described before [33].
T47 74-117 Sentence denotes LTR plasmid construction and reporter assay

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4046 170-181 Entity denotes nucleotides
T3572 13-15 Entity denotes 25

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3564 50-59 VBN denotes described
T3563 47-49 IN denotes as
T3562 36-46 NN denotes laboratory
T3561 32-35 PRP$ denotes our
T3560 29-31 IN denotes in
T3559 20-28 VBN denotes isolated
T3558 16-19 VBD denotes was
T3557 6-15 CD denotes HIV-1KR25
T3556 4-5 . denotes .
T3569 71-72 . denotes .
T3568 70-71 NNP denotes ]
T3567 68-70 CD denotes 33
T3566 67-68 NNP denotes [
T3565 60-66 IN denotes before
T3864 275-276 , denotes ,
T3863 274-275 -RRB- denotes )
T3862 267-274 NN denotes subtype
T3861 265-266 NNP denotes B
T3860 264-265 -LRB- denotes (
T3859 255-263 JJ denotes HIV-1Bal
T3858 253-254 , denotes ,
T3857 245-253 JJ denotes HIV-1Lai
T3856 242-244 IN denotes of
T3855 237-241 NN denotes site
T3854 226-236 NN denotes initiation
T3853 210-225 JJ denotes transcriptional
T3852 206-209 DT denotes the
T3851 203-205 TO denotes to
T3850 194-202 JJ denotes relative
T3849 190-193 CD denotes +64
T3848 187-189 TO denotes to
T3847 183-186 CD denotes 208
T3846 182-183 VBP denotes −
T3845 170-181 NNS denotes nucleotides
T3844 160-169 VBG denotes inserting
T3843 157-159 IN denotes by
T3842 145-156 VBN denotes constructed
T3841 140-144 VBD denotes were
T3840 131-139 NNS denotes plasmids
T3839 122-130 NN denotes reporter
T3838 118-121 NNP denotes LTR
T3837 112-117 NN denotes assay
T3836 103-111 NN denotes reporter
T3835 99-102 CC denotes and
T3834 86-98 NN denotes construction
T3833 78-85 JJ denotes plasmid
T3832 74-77 NNP denotes LTR
R2810 T3557 T3558 nsubj HIV-1KR25,was
R2811 T3558 T3558 ROOT was,was
R2812 T3559 T3558 acomp isolated,was
R2813 T3560 T3559 prep in,isolated
R2814 T3561 T3562 poss our,laboratory
R2815 T3562 T3560 pobj laboratory,in
R2816 T3563 T3564 mark as,described
R2817 T3564 T3558 advcl described,was
R2818 T3565 T3564 prep before,described
R2819 T3566 T3565 pobj [,before
R2820 T3567 T3568 nummod 33,]
R2821 T3568 T3566 appos ],[
R2822 T3569 T3558 punct .,was
R3027 T3832 T3842 nsubjpass LTR,constructed
R3028 T3833 T3834 compound plasmid,construction
R3029 T3834 T3832 dobj construction,LTR
R3030 T3835 T3834 cc and,construction
R3031 T3836 T3837 compound reporter,assay
R3032 T3837 T3840 compound assay,plasmids
R3033 T3838 T3839 compound LTR,reporter
R3034 T3839 T3840 compound reporter,plasmids
R3035 T3840 T3834 conj plasmids,construction
R3036 T3841 T3842 auxpass were,constructed
R3037 T3842 T3842 ROOT constructed,constructed
R3038 T3843 T3842 prep by,constructed
R3039 T3844 T3843 pcomp inserting,by
R3040 T3845 T3844 dobj nucleotides,inserting
R3041 T3846 T3849 quantmod −,+64
R3042 T3847 T3849 quantmod 208,+64
R3043 T3848 T3849 quantmod to,+64
R3044 T3849 T3850 npadvmod +64,relative
R3045 T3850 T3842 advmod relative,constructed
R3046 T3851 T3850 prep to,relative
R3047 T3852 T3855 det the,site
R3048 T3853 T3855 amod transcriptional,site
R3049 T3854 T3855 compound initiation,site
R3050 T3855 T3851 pobj site,to
R3051 T3856 T3855 prep of,site
R3053 T3858 T3857 punct ",",HIV-1Lai
R3054 T3859 T3857 conj HIV-1Bal,HIV-1Lai
R3055 T3860 T3862 punct (,subtype
R3056 T3861 T3862 compound B,subtype
R3057 T3862 T3859 appos subtype,HIV-1Bal
R3058 T3863 T3862 punct ),subtype
R3059 T3864 T3859 punct ",",HIV-1Bal