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PMC:3320587 / 669-972 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T323 299-302 NN denotes MTb
T322 296-298 IN denotes by
T321 284-295 NN denotes replication
T320 278-283 NN denotes HIV-1
T319 275-277 IN denotes of
T318 265-274 NN denotes induction
T317 256-264 JJ denotes efficent
T316 252-255 IN denotes for
T315 243-251 VB denotes required
T314 240-242 VB denotes is
T313 233-239 NN denotes clones
T312 223-232 JJ denotes molecular
T311 221-222 NN denotes C
T310 213-220 NN denotes subtype
T309 209-212 CC denotes and
T308 207-208 NN denotes B
T307 199-206 NN denotes subtype
T306 193-198 NN denotes HIV-1
T305 183-192 JJ denotes R5-tropic
T304 180-182 IN denotes of
T303 171-179 NN denotes promoter
T302 165-170 JJ denotes viral
T301 161-164 DT denotes the
T300 158-160 IN denotes in
T299 153-157 NN denotes site
T298 145-152 NN denotes binding
T297 139-144 NN denotes NFAT5
T296 132-138 JJ denotes intact
T295 129-131 DT denotes an
T294 124-128 IN denotes that
T293 120-123 CC denotes and
T292 118-119 -COMMA- denotes ,
T291 112-118 NN denotes ligand
T290 110-111 -RRB- denotes )
T289 107-110 NN denotes TLR
T288 106-107 -LRB- denotes (
T287 97-105 NN denotes receptor
T286 87-96 JJ denotes Toll-like
T285 85-86 DT denotes a
T284 82-84 VB denotes is
T283 76-81 WDT denotes which
T282 74-75 -COMMA- denotes ,
T281 71-74 NN denotes MTb
T280 68-70 IN denotes by
T279 60-67 VB denotes induced
T278 51-59 RB denotes strongly
T277 47-50 VB denotes are
T276 36-46 NN denotes expression
T275 28-35 NN denotes protein
T274 24-27 CC denotes and
T273 19-23 NN denotes gene
T272 13-18 NN denotes NFAT5
T271 8-12 IN denotes that
T270 3-7 VB denotes show
T269 0-2 PRP denotes We
R98 T269 T270 arg1Of We,show
R99 T273 T272 arg1Of gene,NFAT5
R100 T273 T274 arg1Of gene,and
R101 T274 T277 arg1Of and,are
R102 T274 T279 arg2Of and,induced
R103 T276 T274 arg2Of expression,and
R104 T276 T275 arg1Of expression,protein
R105 T279 T271 arg1Of induced,that
R106 T279 T277 arg2Of induced,are
R107 T279 T278 arg1Of induced,strongly
R108 T279 T293 arg1Of induced,and
R109 T281 T279 arg1Of MTb,induced
R110 T281 T280 arg2Of MTb,by
R111 T281 T282 arg1Of MTb,","
R112 T281 T283 arg1Of MTb,which
R113 T281 T284 arg1Of MTb,is
R114 T289 T288 arg2Of TLR,(
R115 T290 T288 arg3Of ),(
R116 T291 T284 arg2Of ligand,is
R117 T291 T285 arg1Of ligand,a
R118 T291 T286 arg1Of ligand,Toll-like
R119 T291 T287 arg1Of ligand,receptor
R120 T291 T288 arg1Of ligand,(
R121 T293 T270 arg2Of and,show
R122 T293 T292 arg1Of and,","
R123 T294 T293 arg2Of that,and
R124 T299 T295 arg1Of site,an
R125 T299 T296 arg1Of site,intact
R126 T299 T297 arg1Of site,NFAT5
R127 T299 T298 arg1Of site,binding
R128 T299 T300 arg1Of site,in
R129 T299 T314 arg1Of site,is
R130 T299 T315 arg2Of site,required
R131 T303 T300 arg2Of promoter,in
R132 T303 T301 arg1Of promoter,the
R133 T303 T302 arg1Of promoter,viral
R134 T303 T304 arg1Of promoter,of
R135 T308 T309 arg1Of B,and
R136 T310 T309 arg2Of subtype,and
R137 T313 T304 arg2Of clones,of
R138 T313 T305 arg1Of clones,R5-tropic
R139 T313 T306 arg1Of clones,HIV-1
R140 T313 T307 arg1Of clones,subtype
R141 T313 T308 arg1Of clones,B
R142 T313 T310 arg1Of clones,subtype
R143 T313 T311 arg1Of clones,C
R144 T313 T312 arg1Of clones,molecular
R145 T315 T294 arg2Of required,that
R146 T315 T314 arg2Of required,is
R147 T315 T316 arg1Of required,for
R148 T318 T316 arg2Of induction,for
R149 T318 T317 arg1Of induction,efficent
R150 T318 T319 arg1Of induction,of
R151 T318 T322 arg1Of induction,by
R152 T321 T319 arg2Of replication,of
R153 T321 T320 arg1Of replication,HIV-1
R154 T323 T322 arg2Of MTb,by

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T88 13-18 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T413 13-18 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T414 139-144 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-MF

Id Subject Object Predicate Lexical cue
T117 112-118 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand
T118 145-152 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T60 0-303 Sentence denotes We show that NFAT5 gene and protein expression are strongly induced by MTb, which is a Toll-like receptor (TLR) ligand, and that an intact NFAT5 binding site in the viral promoter of R5-tropic HIV-1 subtype B and subtype C molecular clones is required for efficent induction of HIV-1 replication by MTb.
T6 0-303 Sentence denotes We show that NFAT5 gene and protein expression are strongly induced by MTb, which is a Toll-like receptor (TLR) ligand, and that an intact NFAT5 binding site in the viral promoter of R5-tropic HIV-1 subtype B and subtype C molecular clones is required for efficent induction of HIV-1 replication by MTb.

simple1

Id Subject Object Predicate Lexical cue
T171 13-18 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T758 13-18 Protein denotes NFAT5
T769 60-67 Positive_regulation denotes induced
T770 36-46 Gene_expression denotes expression
R583 T758 T769 themeOf NFAT5,induced
R584 T758 T770 themeOf NFAT5,expression
R592 T770 T769 themeOf expression,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T444 13-18 Protein denotes NFAT5
T454 60-67 Positive_regulation denotes induced
T455 36-46 Gene_expression denotes expression
T456 243-251 Positive_regulation denotes required
T457 265-274 Positive_regulation denotes induction
R509 T444 T454 themeOf NFAT5,induced
R510 T444 T457 themeOf NFAT5,induction
R511 T444 T455 themeOf NFAT5,expression
R518 T455 T454 themeOf expression,induced
R519 T457 T456 themeOf induction,required

DLUT931

Id Subject Object Predicate Lexical cue
T434 60-67 Positive_regulation denotes induced
T424 13-18 Protein denotes NFAT5
T433 36-46 Gene_expression denotes expression
R502 T424 T433 themeOf NFAT5,expression
R503 T424 T434 themeOf NFAT5,induced
R507 T433 T434 themeOf expression,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T823 129-157 Binding denotes an intact NFAT5 binding site
T816 28-46 Gene_expression denotes protein expression
T810 68-74 Protein denotes by MTb
T809 13-23 Protein denotes NFAT5 gene
T780 87-119 Entity denotes Toll-like receptor (TLR) ligand,
T782 161-206 Entity denotes the viral promoter of R5-tropic HIV-1 subtype
T787 296-302 Protein denotes by MTb
T788 139-144 Protein denotes NFAT5
T790 129-157 Entity denotes an intact NFAT5 binding site
T796 87-111 Protein denotes Toll-like receptor (TLR)
T800 13-18 Protein denotes NFAT5
T806 28-35 Protein denotes protein
R606 T806 T816 themeOf protein,protein expression
R600 T790 T823 themeOf an intact NFAT5 binding site,an intact NFAT5 binding site

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T647 207-208 NNP denotes B
T646 199-206 NN denotes subtype
T645 193-198 NN denotes HIV-1
T644 183-192 JJ denotes R5-tropic
T643 180-182 IN denotes of
T642 171-179 NN denotes promoter
T641 165-170 JJ denotes viral
T640 161-164 DT denotes the
T639 158-160 IN denotes in
T638 153-157 NN denotes site
T637 145-152 JJ denotes binding
T636 139-144 NNP denotes NFAT5
T635 132-138 JJ denotes intact
T634 129-131 DT denotes an
T633 124-128 IN denotes that
T632 120-123 CC denotes and
T631 118-119 , denotes ,
T630 112-118 NN denotes ligand
T629 110-111 -RRB- denotes )
T628 107-110 NNP denotes TLR
T627 106-107 -LRB- denotes (
T626 97-105 NN denotes receptor
T625 87-96 JJ denotes Toll-like
T624 85-86 DT denotes a
T623 82-84 VBZ denotes is
T622 76-81 WDT denotes which
T621 74-75 , denotes ,
T620 71-74 NNP denotes MTb
T619 68-70 IN denotes by
T618 60-67 VBN denotes induced
T617 51-59 RB denotes strongly
T616 47-50 VBP denotes are
T615 36-46 NN denotes expression
T614 28-35 NN denotes protein
T613 24-27 CC denotes and
T612 19-23 NN denotes gene
T611 13-18 CD denotes NFAT5
T610 8-12 IN denotes that
T609 3-7 VBP denotes show
T608 0-2 PRP denotes We
T648 209-212 CC denotes and
T649 213-220 JJ denotes subtype
T650 221-222 NNP denotes C
T651 223-232 JJ denotes molecular
T652 233-239 NNS denotes clones
T653 240-242 VBZ denotes is
T654 243-251 VBN denotes required
T655 252-255 IN denotes for
T656 256-264 JJ denotes efficent
T657 265-274 NN denotes induction
T658 275-277 IN denotes of
T659 278-283 JJ denotes HIV-1
T660 284-295 NN denotes replication
T661 296-298 IN denotes by
T662 299-302 NNP denotes MTb
T663 302-303 . denotes .
R342 T608 T609 nsubj We,show
R343 T609 T609 ROOT show,show
R344 T610 T618 mark that,induced
R345 T611 T618 nsubjpass NFAT5,induced
R346 T612 T618 nsubjpass gene,induced
R347 T613 T612 cc and,gene
R348 T614 T615 compound protein,expression
R349 T615 T612 conj expression,gene
R350 T616 T618 auxpass are,induced
R351 T617 T618 advmod strongly,induced
R352 T618 T609 ccomp induced,show
R353 T619 T618 agent by,induced
R354 T620 T619 pobj MTb,by
R355 T621 T620 punct ",",MTb
R356 T622 T623 nsubj which,is
R357 T623 T620 relcl is,MTb
R358 T624 T626 det a,receptor
R359 T625 T626 amod Toll-like,receptor
R360 T626 T623 attr receptor,is
R361 T627 T628 punct (,TLR
R362 T628 T623 npadvmod TLR,is
R363 T629 T618 punct ),induced
R364 T630 T618 conj ligand,induced
R365 T631 T630 punct ",",ligand
R366 T632 T618 cc and,induced
R367 T633 T654 mark that,required
R368 T634 T638 det an,site
R369 T635 T638 amod intact,site
R370 T636 T638 nmod NFAT5,site
R371 T637 T638 amod binding,site
R372 T638 T654 nsubjpass site,required
R373 T639 T638 prep in,site
R374 T640 T642 det the,promoter
R375 T641 T642 amod viral,promoter
R376 T642 T639 pobj promoter,in
R377 T643 T642 prep of,promoter
R378 T644 T647 nmod R5-tropic,B
R379 T645 T647 nmod HIV-1,B
R380 T646 T647 compound subtype,B
R381 T647 T652 nmod B,clones
R546 T648 T647 cc and,B
R547 T649 T652 amod subtype,clones
R548 T650 T652 nmod C,clones
R549 T651 T652 amod molecular,clones
R550 T652 T643 pobj clones,of
R551 T653 T654 auxpass is,required
R552 T654 T618 conj required,induced
R553 T655 T654 prep for,required
R554 T656 T657 amod efficent,induction
R555 T657 T655 pobj induction,for
R556 T658 T657 prep of,induction
R557 T659 T660 compound HIV-1,replication
R558 T660 T658 pobj replication,of
R559 T661 T657 prep by,induction
R560 T662 T661 pobj MTb,by
R561 T663 T609 punct .,show

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T135 60-67 Positive_regulation denotes induced
T134 60-67 Positive_regulation denotes induced
T133 36-46 Gene_expression denotes expression
T132 139-157 Protein denotes NFAT5 binding site
T131 13-23 Protein denotes NFAT5 gene
R22 T133 T135 themeOf expression,induced
R20 T131 T133 themeOf NFAT5 gene,expression
R21 T131 T134 themeOf NFAT5 gene,induced

testone

Id Subject Object Predicate Lexical cue
T24 60-67 Positive_regulation denotes induced
T15 13-18 Protein denotes NFAT5

test3

Id Subject Object Predicate Lexical cue
T35 13-18 Protein denotes NFAT5
T47 60-67 Positive_regulation denotes induced
T46 13-18 Protein denotes NFAT5
R12 T46 T47 themeOf NFAT5,induced