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PMC:3320587 / 5261-5586 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-12359721-98010784 141-143 12359721 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1694 323-324 -RRB- denotes )
T1693 319-323 NN denotes PBMC
T1692 318-319 -LRB- denotes (
T1691 312-317 NN denotes cells
T1690 300-311 JJ denotes mononuclear
T1689 294-299 NN denotes blood
T1688 283-293 JJ denotes peripheral
T1687 279-282 CC denotes and
T1686 269-278 NN denotes monocytes
T1685 266-268 IN denotes in
T1684 258-265 NN denotes pathway
T1683 245-257 JJ denotes TLR-mediated
T1682 243-244 DT denotes a
T1681 239-242 IN denotes via
T1680 227-238 NN denotes replication
T1679 221-226 NN denotes HIV-1
T1678 218-220 IN denotes of
T1677 207-217 NN denotes activation
T1676 195-206 JJ denotes MTb-induced
T1675 192-194 IN denotes in
T1674 183-191 VB denotes involved
T1673 180-182 VB denotes be
T1672 175-179 RB denotes also
T1671 171-174 MD denotes may
T1670 165-170 NN denotes NFAT5
T1669 160-164 IN denotes that
T1668 149-159 VB denotes speculated
T1667 146-148 PRP denotes we
T1666 144-145 -COMMA- denotes ,
T1665 143-144 -RRB- denotes ]
T1664 141-143 CD denotes 32
T1663 140-141 -LRB- denotes [
T1662 138-139 -COMMA- denotes ,
T1661 129-138 NN denotes signaling
T1660 123-128 NN denotes MyD88
T1659 120-122 IN denotes of
T1658 109-119 JJ denotes downstream
T1657 106-108 VB denotes is
T1656 100-105 WDT denotes which
T1655 98-99 -COMMA- denotes ,
T1654 95-98 NN denotes p38
T1653 88-94 NN denotes kinase
T1652 84-87 NN denotes MAP
T1651 80-83 DT denotes the
T1650 77-79 IN denotes by
T1649 67-76 VB denotes activated
T1648 49-66 RB denotes transcriptionally
T1647 46-48 VB denotes be
T1646 43-45 TO denotes to
T1645 37-42 VB denotes shown
T1644 32-36 VB denotes been
T1643 21-31 RB denotes previously
T1642 17-20 VB denotes has
T1641 11-16 NN denotes NFAT5
T1640 6-10 IN denotes that
T1639 0-5 VB denotes Given
R1214 T1641 T1639 arg2Of NFAT5,Given
R1215 T1641 T1640 arg1Of NFAT5,that
R1216 T1641 T1642 arg1Of NFAT5,has
R1217 T1641 T1644 arg1Of NFAT5,been
R1218 T1641 T1645 arg2Of NFAT5,shown
R1219 T1641 T1647 arg1Of NFAT5,be
R1220 T1641 T1649 arg2Of NFAT5,activated
R1221 T1645 T1642 arg2Of shown,has
R1222 T1645 T1643 arg1Of shown,previously
R1223 T1645 T1644 arg2Of shown,been
R1224 T1649 T1645 arg3Of activated,shown
R1225 T1649 T1646 arg1Of activated,to
R1226 T1649 T1647 arg2Of activated,be
R1227 T1649 T1648 arg1Of activated,transcriptionally
R1228 T1654 T1649 arg1Of p38,activated
R1229 T1654 T1650 arg2Of p38,by
R1230 T1654 T1651 arg1Of p38,the
R1231 T1654 T1652 arg1Of p38,MAP
R1232 T1654 T1653 arg1Of p38,kinase
R1233 T1654 T1655 arg1Of p38,","
R1234 T1654 T1656 arg1Of p38,which
R1235 T1654 T1657 arg1Of p38,is
R1236 T1654 T1658 arg1Of p38,downstream
R1237 T1657 T1662 arg1Of is,","
R1238 T1657 T1663 arg1Of is,[
R1239 T1658 T1657 arg2Of downstream,is
R1240 T1658 T1659 arg1Of downstream,of
R1241 T1661 T1659 arg2Of signaling,of
R1242 T1661 T1660 arg1Of signaling,MyD88
R1243 T1664 T1663 arg2Of 32,[
R1244 T1665 T1663 arg3Of ],[
R1245 T1667 T1668 arg1Of we,speculated
R1246 T1668 T1657 arg3Of speculated,is
R1247 T1668 T1666 arg1Of speculated,","
R1248 T1670 T1671 arg1Of NFAT5,may
R1249 T1670 T1673 arg1Of NFAT5,be
R1250 T1670 T1674 arg2Of NFAT5,involved
R1251 T1674 T1668 arg2Of involved,speculated
R1252 T1674 T1669 arg1Of involved,that
R1253 T1674 T1671 arg2Of involved,may
R1254 T1674 T1672 arg1Of involved,also
R1255 T1674 T1673 arg2Of involved,be
R1256 T1674 T1675 arg1Of involved,in
R1257 T1674 T1681 arg1Of involved,via
R1258 T1677 T1675 arg2Of activation,in
R1259 T1677 T1676 arg1Of activation,MTb-induced
R1260 T1677 T1678 arg1Of activation,of
R1261 T1680 T1678 arg2Of replication,of
R1262 T1680 T1679 arg1Of replication,HIV-1
R1263 T1684 T1681 arg2Of pathway,via
R1264 T1684 T1682 arg1Of pathway,a
R1265 T1684 T1683 arg1Of pathway,TLR-mediated
R1266 T1684 T1685 arg1Of pathway,in
R1267 T1686 T1687 arg1Of monocytes,and
R1268 T1687 T1685 arg2Of and,in
R1269 T1691 T1687 arg2Of cells,and
R1270 T1691 T1688 arg1Of cells,peripheral
R1271 T1691 T1689 arg1Of cells,blood
R1272 T1691 T1690 arg1Of cells,mononuclear
R1273 T1691 T1692 arg1Of cells,(
R1274 T1693 T1692 arg2Of PBMC,(
R1275 T1694 T1692 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T992 165-170 Protein denotes NFAT5
T991 123-128 Protein denotes MyD88
T990 11-16 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1794 84-98 http://www.uniprot.org/uniprot/Q15759 denotes MAP kinase p38
T1793 84-98 http://www.uniprot.org/uniprot/P53778 denotes MAP kinase p38
T1792 84-98 http://www.uniprot.org/uniprot/O15264 denotes MAP kinase p38
T1791 84-98 http://www.uniprot.org/uniprot/Q16539 denotes MAP kinase p38
T1786 165-170 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1785 11-16 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1776 123-128 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

UBERON-AE

Id Subject Object Predicate Lexical cue
T924 294-299 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T1010 49-66 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptionally
T1004 129-138 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1026 95-98 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T1025 67-94 http://purl.obolibrary.org/obo/GO_0000187 denotes activated by the MAP kinase

GO-MF

Id Subject Object Predicate Lexical cue
T1046 95-98 http://purl.obolibrary.org/obo/GO_0004707 denotes p38

GO-CC

Id Subject Object Predicate Lexical cue
T1052 312-317 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T938 0-325 Sentence denotes Given that NFAT5 has previously been shown to be transcriptionally activated by the MAP kinase p38, which is downstream of MyD88 signaling, [32], we speculated that NFAT5 may also be involved in MTb-induced activation of HIV-1 replication via a TLR-mediated pathway in monocytes and peripheral blood mononuclear cells (PBMC).
T30 0-325 Sentence denotes Given that NFAT5 has previously been shown to be transcriptionally activated by the MAP kinase p38, which is downstream of MyD88 signaling, [32], we speculated that NFAT5 may also be involved in MTb-induced activation of HIV-1 replication via a TLR-mediated pathway in monocytes and peripheral blood mononuclear cells (PBMC).

simple1

Id Subject Object Predicate Lexical cue
T1086 165-170 Protein denotes NFAT5
T1085 123-128 Protein denotes MyD88
T1084 11-16 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2690 67-76 Positive_regulation denotes activated
T2680 165-170 Protein denotes NFAT5
T2679 123-128 Protein denotes MyD88
T2678 11-16 Protein denotes NFAT5
R2080 T2678 T2690 themeOf NFAT5,activated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1870 67-76 Positive_regulation denotes activated
T1869 183-191 Positive_regulation denotes involved
T1859 165-170 Protein denotes NFAT5
T1858 123-128 Protein denotes MyD88
T1857 11-16 Protein denotes NFAT5
R1385 T1857 T1870 themeOf NFAT5,activated
R1386 T1859 T1869 themeOf NFAT5,involved

DLUT931

Id Subject Object Predicate Lexical cue
T1819 183-191 Positive_regulation denotes involved
T1818 67-76 Positive_regulation denotes activated
T1808 165-170 Protein denotes NFAT5
T1807 123-128 Protein denotes MyD88
T1806 11-16 Protein denotes NFAT5
R1362 T1806 T1818 themeOf NFAT5,activated
R1363 T1808 T1819 themeOf NFAT5,involved

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2775 123-145 Positive_regulation denotes MyD88 signaling, [32],
T2766 195-206 Protein denotes MTb-induced
T2755 165-170 Protein denotes NFAT5
T2743 283-317 Entity denotes peripheral blood mononuclear cells
T2732 269-278 Entity denotes monocytes
T2731 11-16 Protein denotes NFAT5
T2726 123-128 Protein denotes MyD88
T2724 77-99 Protein denotes by the MAP kinase p38,
T2706 84-87 Protein denotes MAP
T2700 77-99 Protein denotes by the MAP kinase p38,
T2694 77-99 Protein denotes by the MAP kinase p38,
R2146 T2726 T2775 causeOf MyD88,"MyD88 signaling, [32],"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2586 324-325 . denotes .
T2585 323-324 -RRB- denotes )
T2584 319-323 NNP denotes PBMC
T2583 318-319 -LRB- denotes (
T2582 312-317 NNS denotes cells
T2581 300-311 NN denotes mononuclear
T2580 294-299 NN denotes blood
T2579 283-293 JJ denotes peripheral
T2578 279-282 CC denotes and
T2577 269-278 NNS denotes monocytes
T2576 266-268 IN denotes in
T2575 258-265 NN denotes pathway
T2574 245-257 JJ denotes TLR-mediated
T2573 243-244 DT denotes a
T2572 239-242 IN denotes via
T2571 227-238 NN denotes replication
T2570 221-226 JJ denotes HIV-1
T2569 218-220 IN denotes of
T2568 207-217 NN denotes activation
T2509 149-159 VBD denotes speculated
T2508 146-148 PRP denotes we
T2507 144-145 , denotes ,
T2506 143-144 NNP denotes ]
T2505 141-143 CD denotes 32
T2504 140-141 NNP denotes [
T2503 138-139 , denotes ,
T2502 129-138 VBG denotes signaling
T2501 123-128 NNP denotes MyD88
T2500 120-122 IN denotes of
T2499 109-119 JJ denotes downstream
T2498 106-108 VBZ denotes is
T2497 100-105 WDT denotes which
T2496 98-99 , denotes ,
T2495 95-98 CD denotes p38
T2494 88-94 NN denotes kinase
T2493 84-87 NNP denotes MAP
T2492 80-83 DT denotes the
T2491 77-79 IN denotes by
T2490 67-76 VBN denotes activated
T2489 49-66 RB denotes transcriptionally
T2488 46-48 VB denotes be
T2487 43-45 TO denotes to
T2486 37-42 VBN denotes shown
T2485 32-36 VBN denotes been
T2484 21-31 RB denotes previously
T2483 17-20 VBZ denotes has
T2482 11-16 NNP denotes NFAT5
T2481 6-10 IN denotes that
T2480 0-5 VBN denotes Given
T2567 195-206 JJ denotes MTb-induced
T2566 192-194 IN denotes in
T2565 183-191 VBN denotes involved
T2564 180-182 VB denotes be
T2563 175-179 RB denotes also
T2562 171-174 MD denotes may
T2561 165-170 NNP denotes NFAT5
T2560 160-164 IN denotes that
R1962 T2480 T2509 prep Given,speculated
R1965 T2481 T2486 mark that,shown
R1967 T2482 T2486 nsubj NFAT5,shown
R1968 T2483 T2486 aux has,shown
R1969 T2484 T2486 advmod previously,shown
R1970 T2485 T2486 auxpass been,shown
R1971 T2486 T2480 pcomp shown,Given
R1972 T2487 T2490 aux to,activated
R1973 T2488 T2490 auxpass be,activated
R1974 T2489 T2490 advmod transcriptionally,activated
R1977 T2490 T2486 xcomp activated,shown
R1978 T2491 T2490 agent by,activated
R1980 T2492 T2494 det the,kinase
R1981 T2493 T2494 compound MAP,kinase
R1985 T2494 T2491 pobj kinase,by
R1986 T2495 T2494 appos p38,kinase
R1987 T2496 T2494 punct ",",kinase
R1989 T2497 T2498 nsubj which,is
R1992 T2498 T2494 relcl is,kinase
R1995 T2499 T2498 acomp downstream,is
R1996 T2500 T2499 prep of,downstream
R1998 T2501 T2500 pobj MyD88,of
R2000 T2502 T2498 advcl signaling,is
R2002 T2503 T2502 punct ",",signaling
R2003 T2504 T2506 nmod [,]
R2007 T2505 T2506 nummod 32,]
R2009 T2506 T2502 appos ],signaling
R2010 T2507 T2509 punct ",",speculated
R2011 T2508 T2509 nsubj we,speculated
R2012 T2509 T2509 ROOT speculated,speculated
R2013 T2560 T2565 mark that,involved
R2014 T2561 T2565 nsubjpass NFAT5,involved
R2015 T2562 T2565 aux may,involved
R2018 T2563 T2564 advmod also,be
R2020 T2564 T2565 auxpass be,involved
R2021 T2565 T2509 ccomp involved,speculated
R2022 T2566 T2565 prep in,involved
R2023 T2567 T2568 amod MTb-induced,activation
R2024 T2568 T2566 pobj activation,in
R2026 T2569 T2568 prep of,activation
R2027 T2570 T2571 compound HIV-1,replication
R2028 T2571 T2569 pobj replication,of
R2029 T2572 T2565 prep via,involved
R2031 T2573 T2575 det a,pathway
R2032 T2574 T2575 amod TLR-mediated,pathway
R2033 T2575 T2572 pobj pathway,via
R2035 T2576 T2575 prep in,pathway
R2036 T2577 T2576 pobj monocytes,in
R2037 T2578 T2577 cc and,monocytes
R2038 T2579 T2582 amod peripheral,cells
R2039 T2580 T2581 compound blood,mononuclear
R2040 T2581 T2582 compound mononuclear,cells
R2041 T2582 T2577 conj cells,monocytes
R2042 T2583 T2584 punct (,PBMC
R2044 T2584 T2582 appos PBMC,cells
R2045 T2585 T2565 punct ),involved
R2046 T2586 T2509 punct .,speculated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1917 165-170 Protein denotes NFAT5
T1916 123-128 Protein denotes MyD88
T1915 84-98 Protein denotes MAP kinase p38
T1914 11-16 Protein denotes NFAT5

testone

Id Subject Object Predicate Lexical cue
T867 165-170 Protein denotes NFAT5
T866 123-128 Protein denotes MyD88
T865 11-16 Protein denotes NFAT5

test3

Id Subject Object Predicate Lexical cue
T917 165-170 Protein denotes NFAT5
T916 123-128 Protein denotes MyD88
T915 67-76 Positive_regulation denotes activated
T914 11-16 Protein denotes NFAT5
T893 165-170 Protein denotes NFAT5
T892 123-128 Protein denotes MyD88
T891 11-16 Protein denotes NFAT5
R625 T914 T915 themeOf NFAT5,activated