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PMC:3320587 / 5254-5495 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-12359721-98010784 148-150 12359721 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1679 228-233 NN denotes HIV-1
T1678 225-227 IN denotes of
T1677 214-224 NN denotes activation
T1676 202-213 JJ denotes MTb-induced
T1675 199-201 IN denotes in
T1674 190-198 VB denotes involved
T1673 187-189 VB denotes be
T1672 182-186 RB denotes also
T1671 178-181 MD denotes may
T1670 172-177 NN denotes NFAT5
T1669 167-171 IN denotes that
T1668 156-166 VB denotes speculated
T1667 153-155 PRP denotes we
T1666 151-152 -COMMA- denotes ,
T1665 150-151 -RRB- denotes ]
T1664 148-150 CD denotes 32
T1663 147-148 -LRB- denotes [
T1662 145-146 -COMMA- denotes ,
T1661 136-145 NN denotes signaling
T1660 130-135 NN denotes MyD88
T1659 127-129 IN denotes of
T1658 116-126 JJ denotes downstream
T1657 113-115 VB denotes is
T1656 107-112 WDT denotes which
T1655 105-106 -COMMA- denotes ,
T1654 102-105 NN denotes p38
T1653 95-101 NN denotes kinase
T1652 91-94 NN denotes MAP
T1651 87-90 DT denotes the
T1650 84-86 IN denotes by
T1649 74-83 VB denotes activated
T1648 56-73 RB denotes transcriptionally
T1647 53-55 VB denotes be
T1646 50-52 TO denotes to
T1645 44-49 VB denotes shown
T1644 39-43 VB denotes been
T1643 28-38 RB denotes previously
T1642 24-27 VB denotes has
T1641 18-23 NN denotes NFAT5
T1640 13-17 IN denotes that
T1639 7-12 VB denotes Given
T1638 4-5 -RRB- denotes ]
T1637 2-4 CD denotes 31
T1636 1-2 -LRB- denotes [
R1212 T1637 T1636 arg2Of 31,[
R1213 T1638 T1636 arg3Of ],[
R1214 T1641 T1639 arg2Of NFAT5,Given
R1215 T1641 T1640 arg1Of NFAT5,that
R1216 T1641 T1642 arg1Of NFAT5,has
R1217 T1641 T1644 arg1Of NFAT5,been
R1218 T1641 T1645 arg2Of NFAT5,shown
R1219 T1641 T1647 arg1Of NFAT5,be
R1220 T1641 T1649 arg2Of NFAT5,activated
R1221 T1645 T1642 arg2Of shown,has
R1222 T1645 T1643 arg1Of shown,previously
R1223 T1645 T1644 arg2Of shown,been
R1224 T1649 T1645 arg3Of activated,shown
R1225 T1649 T1646 arg1Of activated,to
R1226 T1649 T1647 arg2Of activated,be
R1227 T1649 T1648 arg1Of activated,transcriptionally
R1228 T1654 T1649 arg1Of p38,activated
R1229 T1654 T1650 arg2Of p38,by
R1230 T1654 T1651 arg1Of p38,the
R1231 T1654 T1652 arg1Of p38,MAP
R1232 T1654 T1653 arg1Of p38,kinase
R1233 T1654 T1655 arg1Of p38,","
R1234 T1654 T1656 arg1Of p38,which
R1235 T1654 T1657 arg1Of p38,is
R1236 T1654 T1658 arg1Of p38,downstream
R1237 T1657 T1662 arg1Of is,","
R1238 T1657 T1663 arg1Of is,[
R1239 T1658 T1657 arg2Of downstream,is
R1240 T1658 T1659 arg1Of downstream,of
R1241 T1661 T1659 arg2Of signaling,of
R1242 T1661 T1660 arg1Of signaling,MyD88
R1243 T1664 T1663 arg2Of 32,[
R1244 T1665 T1663 arg3Of ],[
R1245 T1667 T1668 arg1Of we,speculated
R1246 T1668 T1657 arg3Of speculated,is
R1247 T1668 T1666 arg1Of speculated,","
R1248 T1670 T1671 arg1Of NFAT5,may
R1249 T1670 T1673 arg1Of NFAT5,be
R1250 T1670 T1674 arg2Of NFAT5,involved
R1251 T1674 T1668 arg2Of involved,speculated
R1252 T1674 T1669 arg1Of involved,that
R1253 T1674 T1671 arg2Of involved,may
R1254 T1674 T1672 arg1Of involved,also
R1255 T1674 T1673 arg2Of involved,be
R1256 T1674 T1675 arg1Of involved,in
R1258 T1677 T1675 arg2Of activation,in
R1259 T1677 T1676 arg1Of activation,MTb-induced
R1260 T1677 T1678 arg1Of activation,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T992 172-177 Protein denotes NFAT5
T991 130-135 Protein denotes MyD88
T990 18-23 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1794 91-105 http://www.uniprot.org/uniprot/Q15759 denotes MAP kinase p38
T1793 91-105 http://www.uniprot.org/uniprot/P53778 denotes MAP kinase p38
T1792 91-105 http://www.uniprot.org/uniprot/O15264 denotes MAP kinase p38
T1791 91-105 http://www.uniprot.org/uniprot/Q16539 denotes MAP kinase p38
T1786 172-177 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1785 18-23 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1776 130-135 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

GO-BP

Id Subject Object Predicate Lexical cue
T1010 56-73 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptionally
T1004 136-145 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1026 102-105 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T1025 74-101 http://purl.obolibrary.org/obo/GO_0000187 denotes activated by the MAP kinase

GO-MF

Id Subject Object Predicate Lexical cue
T1046 102-105 http://purl.obolibrary.org/obo/GO_0004707 denotes p38

simple1

Id Subject Object Predicate Lexical cue
T1086 172-177 Protein denotes NFAT5
T1085 130-135 Protein denotes MyD88
T1084 18-23 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2690 74-83 Positive_regulation denotes activated
T2680 172-177 Protein denotes NFAT5
T2679 130-135 Protein denotes MyD88
T2678 18-23 Protein denotes NFAT5
R2080 T2678 T2690 themeOf NFAT5,activated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1870 74-83 Positive_regulation denotes activated
T1869 190-198 Positive_regulation denotes involved
T1859 172-177 Protein denotes NFAT5
T1858 130-135 Protein denotes MyD88
T1857 18-23 Protein denotes NFAT5
R1385 T1857 T1870 themeOf NFAT5,activated
R1386 T1859 T1869 themeOf NFAT5,involved

DLUT931

Id Subject Object Predicate Lexical cue
T1819 190-198 Positive_regulation denotes involved
T1818 74-83 Positive_regulation denotes activated
T1808 172-177 Protein denotes NFAT5
T1807 130-135 Protein denotes MyD88
T1806 18-23 Protein denotes NFAT5
R1362 T1806 T1818 themeOf NFAT5,activated
R1363 T1808 T1819 themeOf NFAT5,involved

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2775 130-152 Positive_regulation denotes MyD88 signaling, [32],
T2766 202-213 Protein denotes MTb-induced
T2755 172-177 Protein denotes NFAT5
T2731 18-23 Protein denotes NFAT5
T2726 130-135 Protein denotes MyD88
T2724 84-106 Protein denotes by the MAP kinase p38,
T2706 91-94 Protein denotes MAP
T2700 84-106 Protein denotes by the MAP kinase p38,
T2694 84-106 Protein denotes by the MAP kinase p38,
R2146 T2726 T2775 causeOf MyD88,"MyD88 signaling, [32],"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2570 228-233 JJ denotes HIV-1
T2569 225-227 IN denotes of
T2568 214-224 NN denotes activation
T2479 5-6 . denotes .
T2478 4-5 NNP denotes ]
T2477 2-4 CD denotes 31
T2476 1-2 NNP denotes [
T2509 156-166 VBD denotes speculated
T2508 153-155 PRP denotes we
T2507 151-152 , denotes ,
T2506 150-151 NNP denotes ]
T2505 148-150 CD denotes 32
T2504 147-148 NNP denotes [
T2503 145-146 , denotes ,
T2502 136-145 VBG denotes signaling
T2501 130-135 NNP denotes MyD88
T2500 127-129 IN denotes of
T2499 116-126 JJ denotes downstream
T2498 113-115 VBZ denotes is
T2497 107-112 WDT denotes which
T2496 105-106 , denotes ,
T2495 102-105 CD denotes p38
T2494 95-101 NN denotes kinase
T2493 91-94 NNP denotes MAP
T2492 87-90 DT denotes the
T2491 84-86 IN denotes by
T2490 74-83 VBN denotes activated
T2489 56-73 RB denotes transcriptionally
T2488 53-55 VB denotes be
T2487 50-52 TO denotes to
T2486 44-49 VBN denotes shown
T2485 39-43 VBN denotes been
T2484 28-38 RB denotes previously
T2483 24-27 VBZ denotes has
T2482 18-23 NNP denotes NFAT5
T2481 13-17 IN denotes that
T2480 7-12 VBN denotes Given
T2567 202-213 JJ denotes MTb-induced
T2566 199-201 IN denotes in
T2565 190-198 VBN denotes involved
T2564 187-189 VB denotes be
T2563 182-186 RB denotes also
T2562 178-181 MD denotes may
T2561 172-177 NNP denotes NFAT5
T2560 167-171 IN denotes that
R1961 T2476 T2478 nmod [,]
R1962 T2480 T2509 prep Given,speculated
R1963 T2477 T2478 nummod 31,]
R1965 T2481 T2486 mark that,shown
R1967 T2482 T2486 nsubj NFAT5,shown
R1968 T2483 T2486 aux has,shown
R1969 T2484 T2486 advmod previously,shown
R1970 T2485 T2486 auxpass been,shown
R1971 T2486 T2480 pcomp shown,Given
R1972 T2487 T2490 aux to,activated
R1973 T2488 T2490 auxpass be,activated
R1974 T2489 T2490 advmod transcriptionally,activated
R1977 T2490 T2486 xcomp activated,shown
R1978 T2491 T2490 agent by,activated
R1980 T2492 T2494 det the,kinase
R1981 T2493 T2494 compound MAP,kinase
R1985 T2494 T2491 pobj kinase,by
R1986 T2495 T2494 appos p38,kinase
R1987 T2496 T2494 punct ",",kinase
R1989 T2497 T2498 nsubj which,is
R1992 T2498 T2494 relcl is,kinase
R1995 T2499 T2498 acomp downstream,is
R1996 T2500 T2499 prep of,downstream
R1998 T2501 T2500 pobj MyD88,of
R2000 T2502 T2498 advcl signaling,is
R2002 T2503 T2502 punct ",",signaling
R2003 T2504 T2506 nmod [,]
R2007 T2505 T2506 nummod 32,]
R2009 T2506 T2502 appos ],signaling
R2010 T2507 T2509 punct ",",speculated
R2011 T2508 T2509 nsubj we,speculated
R2012 T2509 T2509 ROOT speculated,speculated
R2013 T2560 T2565 mark that,involved
R2014 T2561 T2565 nsubjpass NFAT5,involved
R2015 T2562 T2565 aux may,involved
R2018 T2563 T2564 advmod also,be
R2020 T2564 T2565 auxpass be,involved
R2021 T2565 T2509 ccomp involved,speculated
R2022 T2566 T2565 prep in,involved
R2023 T2567 T2568 amod MTb-induced,activation
R2024 T2568 T2566 pobj activation,in
R2026 T2569 T2568 prep of,activation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1917 172-177 Protein denotes NFAT5
T1916 130-135 Protein denotes MyD88
T1915 91-105 Protein denotes MAP kinase p38
T1914 18-23 Protein denotes NFAT5

testone

Id Subject Object Predicate Lexical cue
T867 172-177 Protein denotes NFAT5
T866 130-135 Protein denotes MyD88
T865 18-23 Protein denotes NFAT5

test3

Id Subject Object Predicate Lexical cue
T917 172-177 Protein denotes NFAT5
T916 130-135 Protein denotes MyD88
T915 74-83 Positive_regulation denotes activated
T914 18-23 Protein denotes NFAT5
T893 172-177 Protein denotes NFAT5
T892 130-135 Protein denotes MyD88
T891 18-23 Protein denotes NFAT5
R625 T914 T915 themeOf NFAT5,activated