> top > docs > PMC:3320587 > spans > 5019-5326 > annotations

PMC:3320587 / 5019-5326 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1647 288-290 VB denotes be
T1646 285-287 TO denotes to
T1645 279-284 VB denotes shown
T1644 274-278 VB denotes been
T1643 263-273 RB denotes previously
T1642 259-262 VB denotes has
T1641 253-258 NN denotes NFAT5
T1640 248-252 IN denotes that
T1639 242-247 VB denotes Given
T1638 239-240 -RRB- denotes ]
T1637 237-239 CD denotes 31
T1636 236-237 -LRB- denotes [
T1635 234-235 -RRB- denotes )
T1634 231-234 NN denotes MDM
T1633 230-231 -LRB- denotes (
T1632 218-229 NN denotes macrophages
T1631 201-217 JJ denotes monocyte-derived
T1630 193-200 JJ denotes primary
T1629 187-192 JJ denotes human
T1628 184-186 IN denotes in
T1627 175-183 NN denotes isolates
T1626 173-174 NN denotes E
T1625 169-172 CC denotes and
T1624 167-168 -COMMA- denotes ,
T1623 166-167 NN denotes C
T1622 164-165 -COMMA- denotes ,
T1621 163-164 NN denotes B
T1620 155-162 NN denotes subtype
T1619 149-154 NN denotes HIV-1
T1618 134-148 JJ denotes representative
T1617 131-133 IN denotes of
T1616 119-130 NN denotes replication
T1615 106-118 JJ denotes constitutive
T1614 102-105 IN denotes for
T1613 93-101 VB denotes required
T1612 90-92 VB denotes is
T1611 86-89 CC denotes and
T1610 82-85 NN denotes LTR
T1609 78-81 DT denotes the
T1608 75-77 IN denotes in
T1607 68-74 NN denotes motifs
T1606 60-67 NN denotes binding
T1605 54-59 NN denotes NF-κB
T1604 49-53 NN denotes core
T1603 45-48 DT denotes the
T1602 36-44 VB denotes overlaps
T1601 31-35 NN denotes site
T1600 25-30 NN denotes NFAT5
T1599 20-24 DT denotes This
T1598 14-18 NN denotes LTRs
T1597 10-13 NN denotes SIV
T1596 6-9 CC denotes and
T1595 0-5 NN denotes HIV-2
R1166 T1595 T1596 arg1Of HIV-2,and
R1167 T1597 T1596 arg2Of SIV,and
R1169 T1598 T1595 arg1Of LTRs,HIV-2
R1170 T1598 T1597 arg1Of LTRs,SIV
R1171 T1601 T1599 arg1Of site,This
R1172 T1601 T1600 arg1Of site,NFAT5
R1173 T1601 T1602 arg1Of site,overlaps
R1174 T1601 T1612 arg1Of site,is
R1175 T1601 T1613 arg2Of site,required
R1176 T1602 T1608 arg1Of overlaps,in
R1177 T1602 T1611 arg1Of overlaps,and
R1178 T1607 T1602 arg2Of motifs,overlaps
R1179 T1607 T1603 arg1Of motifs,the
R1180 T1607 T1604 arg1Of motifs,core
R1181 T1607 T1605 arg1Of motifs,NF-κB
R1182 T1607 T1606 arg1Of motifs,binding
R1183 T1610 T1608 arg2Of LTR,in
R1184 T1610 T1609 arg1Of LTR,the
R1185 T1613 T1611 arg2Of required,and
R1186 T1613 T1612 arg2Of required,is
R1187 T1613 T1614 arg1Of required,for
R1188 T1613 T1636 arg1Of required,[
R1189 T1616 T1614 arg2Of replication,for
R1190 T1616 T1615 arg1Of replication,constitutive
R1191 T1616 T1617 arg1Of replication,of
R1192 T1616 T1628 arg1Of replication,in
R1193 T1621 T1622 arg1Of B,","
R1194 T1622 T1625 arg1Of ",",and
R1195 T1623 T1622 arg2Of C,","
R1196 T1625 T1624 arg1Of and,","
R1197 T1626 T1625 arg2Of E,and
R1198 T1627 T1617 arg2Of isolates,of
R1199 T1627 T1618 arg1Of isolates,representative
R1200 T1627 T1619 arg1Of isolates,HIV-1
R1201 T1627 T1620 arg1Of isolates,subtype
R1202 T1627 T1621 arg1Of isolates,B
R1203 T1627 T1623 arg1Of isolates,C
R1204 T1627 T1626 arg1Of isolates,E
R1205 T1632 T1628 arg2Of macrophages,in
R1206 T1632 T1629 arg1Of macrophages,human
R1207 T1632 T1630 arg1Of macrophages,primary
R1208 T1632 T1631 arg1Of macrophages,monocyte-derived
R1209 T1632 T1633 arg1Of macrophages,(
R1210 T1634 T1633 arg2Of MDM,(
R1211 T1635 T1633 arg3Of ),(
R1212 T1637 T1636 arg2Of 31,[
R1213 T1638 T1636 arg3Of ],[
R1214 T1641 T1639 arg2Of NFAT5,Given
R1215 T1641 T1640 arg1Of NFAT5,that
R1216 T1641 T1642 arg1Of NFAT5,has
R1217 T1641 T1644 arg1Of NFAT5,been
R1218 T1641 T1645 arg2Of NFAT5,shown
R1219 T1641 T1647 arg1Of NFAT5,be
R1221 T1645 T1642 arg2Of shown,has
R1222 T1645 T1643 arg1Of shown,previously
R1223 T1645 T1644 arg2Of shown,been

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T990 253-258 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1785 253-258 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1784 25-30 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-MF

Id Subject Object Predicate Lexical cue
T1042 60-67 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T1045 54-67 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding

GO-CC

Id Subject Object Predicate Lexical cue
T1053 49-53 http://purl.obolibrary.org/obo/GO_0019013 denotes core

sentences

Id Subject Object Predicate Lexical cue
T937 20-241 Sentence denotes This NFAT5 site overlaps the core NF-κB binding motifs in the LTR and is required for constitutive replication of representative HIV-1 subtype B, C, and E isolates in human primary monocyte-derived macrophages (MDM) [31].
T29 20-241 Sentence denotes This NFAT5 site overlaps the core NF-κB binding motifs in the LTR and is required for constitutive replication of representative HIV-1 subtype B, C, and E isolates in human primary monocyte-derived macrophages (MDM) [31].

simple1

Id Subject Object Predicate Lexical cue
T1084 253-258 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2678 253-258 Protein denotes NFAT5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1857 253-258 Protein denotes NFAT5

DLUT931

Id Subject Object Predicate Lexical cue
T1806 253-258 Protein denotes NFAT5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2779 45-86 Localization denotes the core NF-κB binding motifs in the LTR
T2760 45-85 Protein denotes the core NF-κB binding motifs in the LTR
T2757 25-30 Protein denotes NFAT5
T2744 231-234 Protein denotes MDM
T2735 193-209 Entity denotes primary monocyte
T2731 253-258 Protein denotes NFAT5
T2725 49-53 Entity denotes core
T2722 20-35 Entity denotes This NFAT5 site
T2711 218-235 Entity denotes macrophages (MDM)
R2145 T2725 T2779 locationOf core,the core NF-κB binding motifs in the LTR
R2153 T2760 T2779 themeOf the core NF-κB binding motifs in the LTR,the core NF-κB binding motifs in the LTR

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2479 240-241 . denotes .
T2478 239-240 NNP denotes ]
T2477 237-239 CD denotes 31
T2476 236-237 NNP denotes [
T2475 234-235 -RRB- denotes )
T2474 231-234 NNP denotes MDM
T2473 230-231 -LRB- denotes (
T2472 218-229 NNS denotes macrophages
T2471 201-217 JJ denotes monocyte-derived
T2470 193-200 JJ denotes primary
T2469 187-192 JJ denotes human
T2468 184-186 IN denotes in
T2467 175-183 VBZ denotes isolates
T2466 173-174 NNP denotes E
T2465 169-172 CC denotes and
T2464 167-168 , denotes ,
T2463 166-167 NNP denotes C
T2462 164-165 , denotes ,
T2461 163-164 NNP denotes B
T2460 155-162 NN denotes subtype
T2459 149-154 NN denotes HIV-1
T2458 134-148 JJ denotes representative
T2457 131-133 IN denotes of
T2456 119-130 NN denotes replication
T2455 106-118 JJ denotes constitutive
T2454 102-105 IN denotes for
T2453 93-101 VBN denotes required
T2452 90-92 VBZ denotes is
T2451 86-89 CC denotes and
T2450 82-85 NNP denotes LTR
T2449 78-81 DT denotes the
T2448 75-77 IN denotes in
T2447 68-74 NNS denotes motifs
T2446 60-67 JJ denotes binding
T2445 54-59 NN denotes NF-κB
T2444 49-53 NN denotes core
T2443 45-48 DT denotes the
T2442 36-44 VBZ denotes overlaps
T2441 31-35 NN denotes site
T2440 25-30 CD denotes NFAT5
T2439 20-24 DT denotes This
T2438 18-19 . denotes .
T2437 14-18 NNPS denotes LTRs
T2436 10-13 NNP denotes SIV
T2435 6-9 CC denotes and
T2434 0-5 NNP denotes HIV-2
T2488 288-290 VB denotes be
T2487 285-287 TO denotes to
T2486 279-284 VBN denotes shown
T2485 274-278 VBN denotes been
T2484 263-273 RB denotes previously
T2483 259-262 VBZ denotes has
T2482 253-258 NNP denotes NFAT5
T2481 248-252 IN denotes that
T2480 242-247 VBN denotes Given
R1936 T2458 T2461 amod representative,B
R1938 T2459 T2461 compound HIV-1,B
R1939 T2460 T2461 compound subtype,B
R1940 T2461 T2457 pobj B,of
R1942 T2462 T2461 punct ",",B
R1943 T2463 T2461 conj C,B
R1944 T2464 T2453 punct ",",required
R1946 T2465 T2453 cc and,required
R1948 T2466 T2467 nsubj E,isolates
R1949 T2467 T2453 conj isolates,required
R1951 T2468 T2467 prep in,isolates
R1952 T2469 T2472 amod human,macrophages
R1953 T2470 T2472 amod primary,macrophages
R1955 T2471 T2472 amod monocyte-derived,macrophages
R1956 T2472 T2468 pobj macrophages,in
R1957 T2473 T2476 punct (,[
R1959 T2474 T2476 nmod MDM,[
R1960 T2475 T2476 punct ),[
R1961 T2476 T2478 nmod [,]
R1963 T2477 T2478 nummod 31,]
R1964 T2478 T2467 dobj ],isolates
R1965 T2481 T2486 mark that,shown
R1966 T2479 T2467 punct .,isolates
R1967 T2482 T2486 nsubj NFAT5,shown
R1968 T2483 T2486 aux has,shown
R1969 T2484 T2486 advmod previously,shown
R1970 T2485 T2486 auxpass been,shown
R1971 T2486 T2480 pcomp shown,Given
R1907 T2435 T2434 cc and,HIV-2
R1908 T2436 T2437 compound SIV,LTRs
R1909 T2437 T2434 conj LTRs,HIV-2
R1912 T2439 T2441 det This,site
R1913 T2440 T2441 nummod NFAT5,site
R1915 T2441 T2442 nsubj site,overlaps
R1916 T2442 T2442 ROOT overlaps,overlaps
R1918 T2443 T2447 det the,motifs
R1919 T2444 T2447 amod core,motifs
R1920 T2445 T2447 amod NF-κB,motifs
R1921 T2446 T2447 amod binding,motifs
R1922 T2447 T2442 dobj motifs,overlaps
R1923 T2448 T2447 prep in,motifs
R1924 T2449 T2450 det the,LTR
R1926 T2450 T2448 pobj LTR,in
R1927 T2451 T2442 cc and,overlaps
R1928 T2452 T2453 auxpass is,required
R1930 T2453 T2442 conj required,overlaps
R1931 T2454 T2453 prep for,required
R1932 T2455 T2456 amod constitutive,replication
R1934 T2456 T2454 pobj replication,for
R1935 T2457 T2456 prep of,replication

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1914 253-258 Protein denotes NFAT5
T1913 36-44 Binding denotes overlaps
T1912 36-44 Binding denotes overlaps
T1911 49-74 Protein denotes core NF-κB binding motifs
T1910 25-35 Protein denotes NFAT5 site
R1409 T1910 T1912 themeOf NFAT5 site,overlaps
R1410 T1910 T1913 themeOf NFAT5 site,overlaps
R1412 T1911 T1913 themeOf core NF-κB binding motifs,overlaps

testone

Id Subject Object Predicate Lexical cue
T865 253-258 Protein denotes NFAT5

test3

Id Subject Object Predicate Lexical cue
T914 253-258 Protein denotes NFAT5
T891 253-258 Protein denotes NFAT5