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PMC:3320587 / 48558-49448 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-8253080-98010821 509-511 8253080 denotes 71
22496647-19132086-98010822 514-516 19132086 denotes 73

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18161 886-889 NN denotes LTR
T18160 882-885 DT denotes the
T18159 879-881 TO denotes to
T18158 873-878 NN denotes NFAT5
T18157 870-872 IN denotes of
T18156 862-869 NN denotes binding
T18155 853-861 VB denotes enhanced
T18154 850-852 IN denotes in
T18153 842-849 VB denotes results
T18152 840-841 CD denotes I
T18151 835-839 NN denotes site
T18119 640-641 -COMMA- denotes ,
T18118 631-640 VB denotes mitigated
T18117 628-630 VB denotes is
T18116 623-627 NN denotes site
T18115 618-622 DT denotes this
T18114 615-617 TO denotes to
T18113 607-614 NN denotes binding
T18112 601-606 NN denotes NF-κB
T18111 598-600 IN denotes of
T18110 593-597 NN denotes loss
T18109 588-592 IN denotes that
T18108 579-587 JJ denotes possible
T18107 576-578 VB denotes is
T18106 573-575 PRP denotes it
T18105 571-572 -COMMA- denotes ,
T18104 567-571 NN denotes site
T18103 559-566 NN denotes binding
T18102 553-558 NN denotes NFAT5
T18101 549-552 DT denotes the
T18100 540-548 VB denotes overlaps
T18099 538-539 PRP denotes I
T18098 533-537 NN denotes site
T18097 527-532 NN denotes NF-κB
T18096 519-526 IN denotes Because
T18095 516-517 -RRB- denotes ]
T18094 514-516 CD denotes 73
T18093 513-514 -LRB- denotes [
T18092 512-513 CD denotes –
T18091 511-512 -RRB- denotes ]
T18090 509-511 CD denotes 71
T18089 508-509 -LRB- denotes [
T18088 504-507 NN denotes LTR
T18087 500-503 DT denotes the
T18086 497-499 TO denotes to
T18085 485-496 NN denotes recruitment
T18084 477-484 NN denotes protein
T18083 474-476 NN denotes Sp
T18082 466-473 VB denotes enhance
T18081 463-465 TO denotes to
T18080 455-462 VB denotes appears
T18079 453-454 -COMMA- denotes ,
T18078 448-453 NN denotes sites
T18077 440-447 NN denotes binding
T18076 437-439 NN denotes Sp
T18075 427-436 VB denotes conserved
T18074 420-426 RB denotes highly
T18073 414-419 CD denotes three
T18072 411-413 IN denotes of
T18071 402-410 JJ denotes upstream
T18070 393-401 RB denotes directly
T18069 390-392 VB denotes is
T18068 384-389 WDT denotes which
T18067 382-383 -COMMA- denotes ,
T18066 378-382 NN denotes site
T18065 370-377 NN denotes binding
T18064 368-369 CD denotes I
T18063 363-367 NN denotes site
T18062 357-362 NN denotes NF-κB
T18061 346-356 JJ denotes downstream
T18060 342-345 DT denotes The
T18059 327-340 NN denotes transcription
T18058 319-326 VB denotes driving
T18057 316-318 IN denotes in
T18056 310-315 NN denotes roles
T18055 301-309 JJ denotes distinct
T18054 296-300 VB denotes have
T18053 290-295 NN denotes sites
T18052 286-289 CD denotes two
T18051 280-285 DT denotes these
T18050 275-279 IN denotes that
T18049 269-274 VB denotes shown
T18048 258-268 RB denotes previously
T18047 253-257 VB denotes have
T18046 246-252 NN denotes assays
T18045 237-245 NN denotes reporter
T18044 227-236 JJ denotes synthetic
T18043 225-226 -COMMA- denotes ,
T18042 217-225 NN denotes findings
T18041 211-216 DT denotes these
T18040 206-210 IN denotes with
T18039 195-205 JJ denotes Consistent
T18038 192-194 NN denotes I.
T18037 187-191 NN denotes site
T18036 181-186 NN denotes NF-κB
T18035 178-180 IN denotes of
T18034 167-177 NN denotes disruption
T18033 162-166 IN denotes than
T18032 150-161 NN denotes replication
T18031 144-149 NN denotes virus
T18030 141-143 IN denotes of
T18029 129-140 NN denotes suppression
T18028 121-128 JJ denotes greater
T18027 118-120 IN denotes in
T18026 109-117 VB denotes resulted
T18025 96-108 RB denotes consistently
T18024 93-95 CD denotes II
T18023 88-92 NN denotes site
T18022 82-87 NN denotes NF-κB
T18021 79-81 IN denotes of
T18020 68-78 NN denotes disruption
T18019 66-67 -COMMA- denotes ,
T18018 54-66 NN denotes co-infection
T18017 50-53 NN denotes MTb
T18016 47-49 IN denotes of
T18015 38-46 NN denotes presence
T18014 34-37 CC denotes and
T18013 26-33 NN denotes absence
T18012 22-25 DT denotes the
T18011 19-21 IN denotes in
T18010 14-18 CC denotes both
T18009 12-13 -COMMA- denotes ,
T18008 0-12 RB denotes Intriguingly
T18150 829-834 NN denotes NF-κB
T18149 826-828 IN denotes of
T18148 815-825 NN denotes disruption
T18147 806-814 JJ denotes specific
T18146 801-805 IN denotes that
T18145 795-800 VB denotes shows
T18144 790-794 WDT denotes that
T18143 781-789 NN denotes analysis
T18142 768-780 NN denotes footprinting
T18141 766-767 CD denotes I
T18140 760-765 NN denotes DNase
T18139 747-759 JJ denotes quantitative
T18138 743-746 PRP-DOLLAR- denotes our
T18137 738-742 IN denotes with
T18136 727-737 JJ denotes consistent
T18135 724-726 VB denotes is
T18134 713-723 NN denotes hypothesis
T18133 708-712 DT denotes This
T18132 702-706 NN denotes site
T18131 694-701 VB denotes mutated
T18130 690-693 DT denotes the
T18129 687-689 TO denotes to
T18128 679-686 NN denotes binding
T18127 673-678 NN denotes NFAT5
T18126 663-672 VB denotes increased
T18125 660-662 IN denotes by
T18124 658-659 -COMMA- denotes ,
T18123 654-658 NN denotes part
T18122 651-653 IN denotes in
T18121 645-650 JJ denotes least
T18120 642-644 IN denotes at
R13009 T18011 T18010 arg1Of in,both
R13010 T18013 T18014 arg1Of absence,and
R13011 T18014 T18011 arg2Of and,in
R13012 T18014 T18012 arg1Of and,the
R13013 T18014 T18016 arg1Of and,of
R13014 T18015 T18014 arg2Of presence,and
R13015 T18018 T18016 arg2Of co-infection,of
R13016 T18018 T18017 arg1Of co-infection,MTb
R13017 T18020 T18021 arg1Of disruption,of
R13018 T18020 T18026 arg1Of disruption,resulted
R13019 T18023 T18021 arg2Of site,of
R13020 T18023 T18022 arg1Of site,NF-κB
R13021 T18023 T18024 arg1Of site,II
R13022 T18026 T18008 arg1Of resulted,Intriguingly
R13023 T18026 T18009 arg1Of resulted,","
R13024 T18026 T18011 arg1Of resulted,in
R13025 T18026 T18019 arg1Of resulted,","
R13026 T18026 T18025 arg1Of resulted,consistently
R13027 T18026 T18027 arg1Of resulted,in
R13028 T18029 T18027 arg2Of suppression,in
R13029 T18029 T18028 arg1Of suppression,greater
R13030 T18029 T18030 arg1Of suppression,of
R13031 T18029 T18033 arg1Of suppression,than
R13032 T18032 T18030 arg2Of replication,of
R13033 T18032 T18031 arg1Of replication,virus
R13034 T18034 T18035 arg1Of disruption,of
R13035 T18034 T18047 arg1Of disruption,have
R13036 T18034 T18049 arg1Of disruption,shown
R13037 T18038 T18035 arg2Of I.,of
R13038 T18038 T18036 arg1Of I.,NF-κB
R13039 T18038 T18037 arg1Of I.,site
R13040 T18038 T18039 arg1Of I.,Consistent
R13041 T18039 T18040 arg1Of Consistent,with
R13042 T18042 T18040 arg2Of findings,with
R13043 T18042 T18041 arg1Of findings,these
R13044 T18042 T18043 arg1Of findings,","
R13045 T18046 T18043 arg2Of assays,","
R13046 T18046 T18044 arg1Of assays,synthetic
R13047 T18046 T18045 arg1Of assays,reporter
R13048 T18049 T18033 arg2Of shown,than
R13049 T18049 T18047 arg2Of shown,have
R13050 T18049 T18048 arg1Of shown,previously
R13051 T18053 T18051 arg1Of sites,these
R13052 T18053 T18052 arg1Of sites,two
R13053 T18053 T18054 arg1Of sites,have
R13054 T18054 T18049 arg2Of have,shown
R13055 T18054 T18050 arg1Of have,that
R13056 T18054 T18057 arg1Of have,in
R13057 T18056 T18054 arg2Of roles,have
R13058 T18056 T18055 arg1Of roles,distinct
R13059 T18058 T18057 arg2Of driving,in
R13060 T18059 T18058 arg2Of transcription,driving
R13061 T18066 T18060 arg1Of site,The
R13062 T18066 T18061 arg1Of site,downstream
R13063 T18066 T18062 arg1Of site,NF-κB
R13064 T18066 T18063 arg1Of site,site
R13065 T18066 T18064 arg1Of site,I
R13066 T18066 T18065 arg1Of site,binding
R13067 T18066 T18067 arg1Of site,","
R13068 T18066 T18068 arg1Of site,which
R13069 T18066 T18069 arg1Of site,is
R13070 T18066 T18071 arg1Of site,upstream
R13071 T18066 T18080 arg1Of site,appears
R13072 T18066 T18082 arg1Of site,enhance
R13073 T18071 T18069 arg2Of upstream,is
R13074 T18071 T18070 arg1Of upstream,directly
R13075 T18071 T18072 arg1Of upstream,of
R13076 T18075 T18074 arg1Of conserved,highly
R13077 T18078 T18072 arg2Of sites,of
R13078 T18078 T18073 arg1Of sites,three
R13079 T18078 T18075 arg1Of sites,conserved
R13080 T18078 T18076 arg1Of sites,Sp
R13081 T18078 T18077 arg1Of sites,binding
R13082 T18080 T18079 arg1Of appears,","
R13083 T18080 T18093 arg1Of appears,[
R13084 T18082 T18080 arg2Of enhance,appears
R13085 T18082 T18081 arg1Of enhance,to
R13086 T18082 T18086 arg1Of enhance,to
R13087 T18085 T18082 arg2Of recruitment,enhance
R13088 T18085 T18083 arg1Of recruitment,Sp
R13089 T18085 T18084 arg1Of recruitment,protein
R13090 T18090 T18089 arg2Of 71,[
R13091 T18091 T18089 arg3Of ],[
R13092 T18092 T18086 arg2Of –,to
R13093 T18092 T18087 arg1Of –,the
R13094 T18092 T18088 arg1Of –,LTR
R13095 T18092 T18089 arg1Of –,[
R13096 T18094 T18093 arg2Of 73,[
R13097 T18095 T18093 arg3Of ],[
R13098 T18098 T18097 arg1Of site,NF-κB
R13099 T18098 T18099 arg1Of site,I
R13100 T18098 T18100 arg1Of site,overlaps
R13101 T18100 T18096 arg2Of overlaps,Because
R13102 T18104 T18100 arg2Of site,overlaps
R13103 T18104 T18101 arg1Of site,the
R13104 T18104 T18102 arg1Of site,NFAT5
R13105 T18104 T18103 arg1Of site,binding
R13106 T18107 T18096 arg1Of is,Because
R13107 T18107 T18105 arg1Of is,","
R13108 T18108 T18107 arg2Of possible,is
R13109 T18110 T18111 arg1Of loss,of
R13110 T18110 T18117 arg1Of loss,is
R13111 T18110 T18118 arg2Of loss,mitigated
R13112 T18113 T18111 arg2Of binding,of
R13113 T18113 T18112 arg1Of binding,NF-κB
R13114 T18113 T18114 arg1Of binding,to
R13115 T18116 T18114 arg2Of site,to
R13116 T18116 T18115 arg1Of site,this
R13117 T18118 T18106 arg1Of mitigated,it
R13118 T18118 T18107 arg1Of mitigated,is
R13119 T18118 T18108 arg1Of mitigated,possible
R13120 T18118 T18109 arg1Of mitigated,that
R13121 T18118 T18117 arg2Of mitigated,is
R13122 T18118 T18119 arg1Of mitigated,","
R13123 T18118 T18122 arg1Of mitigated,in
R13124 T18118 T18124 arg1Of mitigated,","
R13125 T18121 T18120 arg1Of least,at
R13126 T18122 T18121 arg1Of in,least
R13127 T18123 T18122 arg2Of part,in
R13128 T18128 T18118 arg1Of binding,mitigated
R13129 T18128 T18125 arg2Of binding,by
R13130 T18128 T18126 arg2Of binding,increased
R13131 T18128 T18127 arg1Of binding,NFAT5
R13132 T18128 T18129 arg1Of binding,to
R13133 T18132 T18129 arg2Of site,to
R13134 T18132 T18130 arg1Of site,the
R13135 T18132 T18131 arg2Of site,mutated
R13136 T18134 T18133 arg1Of hypothesis,This
R13137 T18134 T18135 arg1Of hypothesis,is
R13138 T18134 T18136 arg1Of hypothesis,consistent
R13139 T18136 T18135 arg2Of consistent,is
R13140 T18136 T18137 arg1Of consistent,with
R13141 T18143 T18137 arg2Of analysis,with
R13142 T18143 T18138 arg1Of analysis,our
R13143 T18143 T18139 arg1Of analysis,quantitative
R13144 T18143 T18140 arg1Of analysis,DNase
R13145 T18143 T18141 arg1Of analysis,I
R13146 T18143 T18142 arg1Of analysis,footprinting
R13147 T18143 T18144 arg1Of analysis,that
R13148 T18143 T18145 arg1Of analysis,shows
R13149 T18148 T18147 arg1Of disruption,specific
R13150 T18148 T18149 arg1Of disruption,of
R13151 T18148 T18153 arg1Of disruption,results
R13152 T18151 T18149 arg2Of site,of
R13153 T18151 T18150 arg1Of site,NF-κB
R13154 T18151 T18152 arg1Of site,I
R13155 T18153 T18145 arg2Of results,shows
R13156 T18153 T18146 arg1Of results,that
R13157 T18153 T18154 arg1Of results,in
R13158 T18156 T18154 arg2Of binding,in
R13159 T18156 T18155 arg2Of binding,enhanced
R13160 T18156 T18157 arg1Of binding,of
R13161 T18156 T18159 arg1Of binding,to
R13162 T18158 T18157 arg2Of NFAT5,of
R13163 T18161 T18159 arg2Of LTR,to
R13164 T18161 T18160 arg1Of LTR,the

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17350 873-878 Protein denotes NFAT5
T17349 760-767 Protein denotes DNase I
T17348 673-678 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18831 873-878 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18830 673-678 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18829 553-558 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T17421 477-496 http://purl.obolibrary.org/obo/GO_0045184 denotes protein recruitment
T17379 327-340 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T17455 853-869 http://purl.obolibrary.org/obo/GO_0035326 denotes enhanced binding
T17451 601-614 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T17443 862-869 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17442 679-686 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17441 607-614 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17440 559-566 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17439 440-447 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17438 370-377 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T17223 708-890 Sentence denotes This hypothesis is consistent with our quantitative DNase I footprinting analysis that shows that specific disruption of NF-κB site I results in enhanced binding of NFAT5 to the LTR.
T17222 519-707 Sentence denotes Because NF-κB site I overlaps the NFAT5 binding site, it is possible that loss of NF-κB binding to this site is mitigated, at least in part, by increased NFAT5 binding to the mutated site.
T17221 342-518 Sentence denotes The downstream NF-κB site I binding site, which is directly upstream of three highly conserved Sp binding sites, appears to enhance Sp protein recruitment to the LTR [71]–[73].
T17220 0-341 Sentence denotes Intriguingly, both in the absence and presence of MTb co-infection, disruption of NF-κB site II consistently resulted in greater suppression of virus replication than disruption of NF-κB site I. Consistent with these findings, synthetic reporter assays have previously shown that these two sites have distinct roles in driving transcription.
T287 0-194 Sentence denotes Intriguingly, both in the absence and presence of MTb co-infection, disruption of NF-κB site II consistently resulted in greater suppression of virus replication than disruption of NF-κB site I.
T288 195-341 Sentence denotes Consistent with these findings, synthetic reporter assays have previously shown that these two sites have distinct roles in driving transcription.
T289 342-518 Sentence denotes The downstream NF-κB site I binding site, which is directly upstream of three highly conserved Sp binding sites, appears to enhance Sp protein recruitment to the LTR [71]–[73].
T290 519-707 Sentence denotes Because NF-κB site I overlaps the NFAT5 binding site, it is possible that loss of NF-κB binding to this site is mitigated, at least in part, by increased NFAT5 binding to the mutated site.
T291 708-890 Sentence denotes This hypothesis is consistent with our quantitative DNase I footprinting analysis that shows that specific disruption of NF-κB site I results in enhanced binding of NFAT5 to the LTR.

simple1

Id Subject Object Predicate Lexical cue
T17488 873-878 Protein denotes NFAT5
T17487 760-767 Protein denotes DNase I
T17486 673-678 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20735 853-861 Positive_regulation denotes enhanced
T20734 862-869 Binding denotes binding
T20733 679-686 Binding denotes binding
T20732 663-672 Positive_regulation denotes increased
T20697 873-878 Protein denotes NFAT5
T20696 760-767 Protein denotes DNase I
T20695 673-678 Protein denotes NFAT5
R15385 T20695 T20732 themeOf NFAT5,increased
R15386 T20695 T20733 themeOf NFAT5,binding
R15387 T20697 T20734 themeOf NFAT5,binding
R15416 T20734 T20735 themeOf binding,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19029 873-878 Protein denotes NFAT5
T19028 760-767 Protein denotes DNase I
T19027 673-678 Protein denotes NFAT5
T19067 853-861 Positive_regulation denotes enhanced
T19066 862-869 Binding denotes binding
T19065 663-672 Positive_regulation denotes increased
T19064 679-686 Binding denotes binding
R13909 T19027 T19064 themeOf NFAT5,binding
R13910 T19029 T19066 themeOf NFAT5,binding
R13930 T19064 T19065 themeOf binding,increased
R13931 T19066 T19067 themeOf binding,enhanced

DLUT931

Id Subject Object Predicate Lexical cue
T18990 853-861 Positive_regulation denotes enhanced
T18989 842-849 Positive_regulation denotes results
T18988 862-869 Binding denotes binding
T18987 663-672 Positive_regulation denotes increased
T18986 631-640 Positive_regulation denotes mitigated
T18985 679-686 Binding denotes binding
T18949 873-878 Protein denotes NFAT5
T18948 760-767 Protein denotes DNase I
T18947 673-678 Protein denotes NFAT5
R13873 T18949 T18988 themeOf NFAT5,binding
R13892 T18985 T18986 themeOf binding,mitigated
R13893 T18985 T18987 themeOf binding,increased
R13894 T18988 T18989 themeOf binding,results
R13895 T18988 T18990 themeOf binding,enhanced
R13872 T18947 T18985 themeOf NFAT5,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20945 477-517 Binding denotes protein recruitment to the LTR [71]–[73]
T20944 342-382 Binding denotes The downstream NF-κB site I binding site
T20941 463-517 Positive_regulation denotes to enhance Sp protein recruitment to the LTR [71]–[73]
T20939 440-454 Binding denotes binding sites,
T20928 850-889 Positive_regulation denotes in enhanced binding of NFAT5 to the LTR
T20927 738-834 Negative_regulation denotes with our quantitative DNase I footprinting analysis that shows that specific disruption of NF-κB
T20894 870-878 Protein denotes of NFAT5
T20893 527-532 Protein denotes NF-κB
T20891 687-706 Entity denotes to the mutated site
T20890 549-558 Protein denotes the NFAT5
T20886 181-186 Protein denotes NF-κB
T20867 747-767 Protein denotes quantitative DNase I
T20866 527-539 Entity denotes NF-κB site I
T20863 50-53 Protein denotes MTb
T20858 82-87 Protein denotes NF-κB
T20853 663-678 Protein denotes increased NFAT5
T20846 342-382 Entity denotes The downstream NF-κB site I binding site
T20833 477-484 Protein denotes protein
T20823 79-95 Entity denotes of NF-κB site II
T20817 835-841 Entity denotes site I
T20815 280-295 Entity denotes these two sites
T20810 342-382 Entity denotes The downstream NF-κB site I binding site
T20792 342-382 Protein denotes The downstream NF-κB site I binding site
T20783 826-834 Protein denotes of NF-κB
T20782 440-454 Entity denotes binding sites,
T20778 567-571 Entity denotes site
T20772 79-95 Entity denotes of NF-κB site II
T20769 178-225 Entity denotes of NF-κB site I. Consistent with these findings
T20764 618-627 Entity denotes this site
T20922 47-66 Regulation denotes of MTb co-infection
T20916 850-889 Binding denotes in enhanced binding of NFAT5 to the LTR
R15402 T20782 T20939 themeOf "binding sites,","binding sites,"
R15410 T20783 T20927 themeOf of NF-κB,with our quantitative DNase I footprinting analysis that shows that specific disruption of NF-κB
R15425 T20833 T20945 themeOf protein,protein recruitment to the LTR [71]–[73]
R15432 T20945 T20941 themeOf protein recruitment to the LTR [71]–[73],to enhance Sp protein recruitment to the LTR [71]–[73]
R15433 T20846 T20944 themeOf The downstream NF-κB site I binding site,The downstream NF-κB site I binding site
R15439 T20863 T20922 themeOf MTb,of MTb co-infection
R15442 T20867 T20927 causeOf quantitative DNase I,with our quantitative DNase I footprinting analysis that shows that specific disruption of NF-κB
R15449 T20894 T20916 themeOf of NFAT5,in enhanced binding of NFAT5 to the LTR
R15453 T20916 T20928 themeOf in enhanced binding of NFAT5 to the LTR,in enhanced binding of NFAT5 to the LTR

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19998 889-890 . denotes .
T19997 886-889 NNP denotes LTR
T19996 882-885 DT denotes the
T19995 879-881 TO denotes to
T19994 873-878 CD denotes NFAT5
T19993 870-872 IN denotes of
T19992 862-869 JJ denotes binding
T19991 853-861 JJ denotes enhanced
T19990 850-852 IN denotes in
T19989 842-849 NNS denotes results
T19988 840-841 PRP denotes I
T19987 835-839 NN denotes site
T19986 829-834 NNP denotes NF-κB
T19985 826-828 IN denotes of
T19984 815-825 NN denotes disruption
T19983 806-814 JJ denotes specific
T19982 801-805 IN denotes that
T19981 795-800 VBZ denotes shows
T19980 790-794 WDT denotes that
T19979 781-789 NN denotes analysis
T19978 768-780 VBG denotes footprinting
T19977 766-767 PRP denotes I
T19976 760-765 NNP denotes DNase
T19975 747-759 JJ denotes quantitative
T19974 743-746 PRP$ denotes our
T19973 738-742 IN denotes with
T19972 727-737 JJ denotes consistent
T19971 724-726 VBZ denotes is
T19970 713-723 NN denotes hypothesis
T19969 708-712 DT denotes This
T19968 706-707 . denotes .
T19967 702-706 NN denotes site
T19966 694-701 VBN denotes mutated
T19965 690-693 DT denotes the
T19964 687-689 TO denotes to
T19963 679-686 JJ denotes binding
T19962 673-678 NNP denotes NFAT5
T19961 663-672 VBN denotes increased
T19960 660-662 IN denotes by
T19959 658-659 , denotes ,
T19958 654-658 NN denotes part
T19957 651-653 IN denotes in
T19956 645-650 JJS denotes least
T19955 642-644 IN denotes at
T19954 640-641 , denotes ,
T19953 631-640 VBN denotes mitigated
T19952 628-630 VBZ denotes is
T19951 623-627 NN denotes site
T19950 618-622 DT denotes this
T19949 615-617 TO denotes to
T19948 607-614 JJ denotes binding
T19947 601-606 JJ denotes NF-κB
T19946 598-600 IN denotes of
T19945 593-597 NN denotes loss
T19944 588-592 IN denotes that
T19943 579-587 JJ denotes possible
T19942 576-578 VBZ denotes is
T19941 573-575 PRP denotes it
T19940 571-572 , denotes ,
T19939 567-571 NN denotes site
T19938 559-566 JJ denotes binding
T19937 553-558 NNP denotes NFAT5
T19936 549-552 DT denotes the
T19935 540-548 VBZ denotes overlaps
T19934 538-539 PRP denotes I
T19933 533-537 NN denotes site
T19932 527-532 NNP denotes NF-κB
T19931 519-526 IN denotes Because
T19930 517-518 . denotes .
T19929 516-517 NNP denotes ]
T19928 514-516 CD denotes 73
T19927 513-514 NNP denotes [
T19926 511-512 NNP denotes ]
T19925 509-511 CD denotes 71
T19924 508-509 NNP denotes [
T19923 504-507 NNP denotes LTR
T19922 500-503 DT denotes the
T19921 497-499 TO denotes to
T19920 485-496 NN denotes recruitment
T19919 477-484 NN denotes protein
T19918 474-476 NNP denotes Sp
T19917 466-473 VB denotes enhance
T19916 463-465 TO denotes to
T19915 455-462 VBZ denotes appears
T19914 453-454 , denotes ,
T19913 448-453 NNS denotes sites
T19912 440-447 JJ denotes binding
T19911 437-439 NNP denotes Sp
T19910 427-436 VBN denotes conserved
T19909 420-426 RB denotes highly
T19908 414-419 CD denotes three
T19907 411-413 IN denotes of
T19906 402-410 JJ denotes upstream
T19905 393-401 RB denotes directly
T19904 390-392 VBZ denotes is
T19903 384-389 WDT denotes which
T19902 382-383 , denotes ,
T19901 378-382 NN denotes site
T19900 370-377 JJ denotes binding
T19899 368-369 PRP denotes I
T19898 363-367 NN denotes site
T19897 357-362 NN denotes NF-κB
T19896 346-356 JJ denotes downstream
T19895 342-345 DT denotes The
T19894 340-341 . denotes .
T19893 327-340 NN denotes transcription
T19892 319-326 VBG denotes driving
T19891 316-318 IN denotes in
T19890 310-315 NNS denotes roles
T19889 301-309 JJ denotes distinct
T19888 296-300 VBP denotes have
T19887 290-295 NNS denotes sites
T19886 286-289 CD denotes two
T19885 280-285 DT denotes these
T19884 275-279 IN denotes that
T19883 269-274 VBN denotes shown
T19882 258-268 RB denotes previously
T19881 253-257 VBP denotes have
T19880 246-252 NNS denotes assays
T19879 237-245 NN denotes reporter
T19878 227-236 JJ denotes synthetic
T19877 225-226 , denotes ,
T19876 217-225 NNS denotes findings
T19875 211-216 DT denotes these
T19874 206-210 IN denotes with
T19873 195-205 NNP denotes Consistent
T19872 192-194 NN denotes I.
T19871 187-191 NN denotes site
T19870 181-186 NNP denotes NF-κB
T19869 178-180 IN denotes of
T19868 167-177 NN denotes disruption
T19867 162-166 IN denotes than
T19866 150-161 NN denotes replication
T19865 144-149 NN denotes virus
T19864 141-143 IN denotes of
T19863 129-140 NN denotes suppression
T19862 121-128 JJR denotes greater
T19861 118-120 IN denotes in
T19860 109-117 VBD denotes resulted
T19859 96-108 RB denotes consistently
T19858 93-95 NNP denotes II
T19857 88-92 NN denotes site
T19856 82-87 NNP denotes NF-κB
T19855 79-81 IN denotes of
T19854 68-78 NN denotes disruption
T19853 66-67 , denotes ,
T19852 54-66 NN denotes co-infection
T19851 50-53 NNP denotes MTb
T19850 47-49 IN denotes of
T19849 38-46 NN denotes presence
T19848 34-37 CC denotes and
T19847 26-33 NN denotes absence
T19846 22-25 DT denotes the
T19845 19-21 IN denotes in
T19844 14-18 DT denotes both
T19843 12-13 , denotes ,
T19842 0-12 RB denotes Intriguingly
R14535 T19842 T19860 advmod Intriguingly,resulted
R14536 T19843 T19860 punct ",",resulted
R14537 T19844 T19845 advmod both,in
R14538 T19845 T19860 prep in,resulted
R14539 T19846 T19847 det the,absence
R14540 T19847 T19845 pobj absence,in
R14541 T19848 T19847 cc and,absence
R14542 T19849 T19847 conj presence,absence
R14543 T19850 T19847 prep of,absence
R14544 T19851 T19852 compound MTb,co-infection
R14545 T19852 T19850 pobj co-infection,of
R14546 T19853 T19852 punct ",",co-infection
R14547 T19854 T19860 nsubj disruption,resulted
R14548 T19855 T19854 prep of,disruption
R14549 T19856 T19858 compound NF-κB,II
R14550 T19857 T19858 compound site,II
R14551 T19858 T19855 pobj II,of
R14552 T19859 T19860 advmod consistently,resulted
R14553 T19860 T19883 ccomp resulted,shown
R14554 T19861 T19860 prep in,resulted
R14555 T19862 T19863 amod greater,suppression
R14556 T19863 T19861 pobj suppression,in
R14557 T19864 T19863 prep of,suppression
R14558 T19865 T19866 compound virus,replication
R14559 T19866 T19864 pobj replication,of
R14560 T19867 T19860 prep than,resulted
R14561 T19868 T19867 pobj disruption,than
R14562 T19869 T19868 prep of,disruption
R14563 T19870 T19873 compound NF-κB,Consistent
R14564 T19871 T19872 compound site,I.
R14565 T19872 T19873 compound I.,Consistent
R14566 T19873 T19869 pobj Consistent,of
R14567 T19874 T19868 prep with,disruption
R14568 T19875 T19876 det these,findings
R14569 T19876 T19874 pobj findings,with
R14570 T19877 T19883 punct ",",shown
R14571 T19878 T19879 amod synthetic,reporter
R14572 T19879 T19880 compound reporter,assays
R14573 T19880 T19883 nsubj assays,shown
R14574 T19881 T19883 aux have,shown
R14575 T19882 T19883 advmod previously,shown
R14576 T19883 T19883 ROOT shown,shown
R14577 T19884 T19888 mark that,have
R14578 T19885 T19887 det these,sites
R14579 T19886 T19887 nummod two,sites
R14580 T19887 T19888 nsubj sites,have
R14581 T19888 T19883 ccomp have,shown
R14582 T19889 T19890 amod distinct,roles
R14583 T19890 T19888 dobj roles,have
R14584 T19891 T19888 prep in,have
R14585 T19892 T19891 pcomp driving,in
R14586 T19893 T19892 dobj transcription,driving
R14587 T19894 T19883 punct .,shown
R14588 T19895 T19898 det The,site
R14589 T19896 T19898 amod downstream,site
R14590 T19897 T19898 compound NF-κB,site
R14591 T19898 T19915 nsubj site,appears
R14592 T19899 T19900 nsubj I,binding
R14593 T19900 T19901 amod binding,site
R14594 T19901 T19898 appos site,site
R14595 T19902 T19901 punct ",",site
R14596 T19903 T19904 nsubj which,is
R14597 T19904 T19901 relcl is,site
R14598 T19905 T19906 advmod directly,upstream
R14599 T19906 T19904 acomp upstream,is
R14600 T19907 T19906 prep of,upstream
R14601 T19908 T19913 nummod three,sites
R14602 T19909 T19910 advmod highly,conserved
R14603 T19910 T19913 amod conserved,sites
R14604 T19911 T19913 nmod Sp,sites
R14605 T19912 T19913 amod binding,sites
R14606 T19913 T19907 pobj sites,of
R14607 T19914 T19915 punct ",",appears
R14608 T19915 T19915 ROOT appears,appears
R14609 T19916 T19917 aux to,enhance
R14610 T19917 T19915 xcomp enhance,appears
R14611 T19918 T19919 compound Sp,protein
R14612 T19919 T19920 compound protein,recruitment
R14613 T19920 T19917 dobj recruitment,enhance
R14614 T19921 T19917 prep to,enhance
R14615 T19922 T19926 det the,]
R14616 T19923 T19924 compound LTR,[
R14617 T19924 T19926 nmod [,]
R14618 T19925 T19926 nummod 71,]
R14619 T19926 T19921 pobj ],to
R14620 T19927 T19926 appos [,]
R14621 T19928 T19929 nummod 73,]
R14622 T19929 T19926 appos ],]
R14623 T19930 T19915 punct .,appears
R14624 T19931 T19942 mark Because,is
R14625 T19932 T19933 compound NF-κB,site
R14626 T19933 T19942 advcl site,is
R14627 T19934 T19935 nsubj I,overlaps
R14628 T19935 T19933 relcl overlaps,site
R14629 T19936 T19939 det the,site
R14630 T19937 T19939 nmod NFAT5,site
R14631 T19938 T19939 amod binding,site
R14632 T19939 T19935 dobj site,overlaps
R14633 T19940 T19942 punct ",",is
R14634 T19941 T19942 nsubj it,is
R14635 T19942 T19942 ROOT is,is
R14636 T19943 T19942 acomp possible,is
R14637 T19944 T19948 mark that,binding
R14638 T19945 T19948 nsubj loss,binding
R14639 T19946 T19945 prep of,loss
R14640 T19947 T19948 amod NF-κB,binding
R14641 T19948 T19942 ccomp binding,is
R14642 T19949 T19948 prep to,binding
R14643 T19950 T19951 det this,site
R14644 T19951 T19949 pobj site,to
R14645 T19952 T19953 auxpass is,mitigated
R14646 T19953 T19942 conj mitigated,is
R14647 T19954 T19953 punct ",",mitigated
R14648 T19955 T19956 advmod at,least
R14649 T19956 T19957 advmod least,in
R14650 T19957 T19953 prep in,mitigated
R14651 T19958 T19957 pobj part,in
R14652 T19959 T19953 punct ",",mitigated
R14653 T19960 T19953 agent by,mitigated
R14654 T19961 T19963 amod increased,binding
R14655 T19962 T19963 compound NFAT5,binding
R14656 T19963 T19960 pobj binding,by
R14657 T19964 T19963 prep to,binding
R14658 T19965 T19967 det the,site
R14659 T19966 T19967 amod mutated,site
R14660 T19967 T19964 pobj site,to
R14661 T19968 T19942 punct .,is
R14662 T19969 T19970 det This,hypothesis
R14663 T19970 T19971 nsubj hypothesis,is
R14664 T19971 T19971 ROOT is,is
R14665 T19972 T19971 acomp consistent,is
R14666 T19973 T19972 prep with,consistent
R14667 T19974 T19976 poss our,DNase
R14668 T19975 T19976 amod quantitative,DNase
R14669 T19976 T19979 nmod DNase,analysis
R14670 T19977 T19979 nmod I,analysis
R14671 T19978 T19979 amod footprinting,analysis
R14672 T19979 T19973 pobj analysis,with
R14673 T19980 T19981 nsubj that,shows
R14674 T19981 T19979 relcl shows,analysis
R14675 T19982 T19984 det that,disruption
R14676 T19983 T19984 amod specific,disruption
R14677 T19984 T19981 dobj disruption,shows
R14678 T19985 T19984 prep of,disruption
R14679 T19986 T19987 compound NF-κB,site
R14680 T19987 T19985 pobj site,of
R14681 T19988 T19989 nsubj I,results
R14682 T19989 T19984 conj results,disruption
R14683 T19990 T19989 prep in,results
R14684 T19991 T19992 amod enhanced,binding
R14685 T19992 T19990 pobj binding,in
R14686 T19993 T19992 prep of,binding
R14687 T19994 T19993 pobj NFAT5,of
R14688 T19995 T19992 prep to,binding
R14689 T19996 T19997 det the,LTR
R14690 T19997 T19995 pobj LTR,to
R14691 T19998 T19971 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19158 853-861 Positive_regulation denotes enhanced
T19157 862-869 Binding denotes binding
T19156 815-825 Positive_regulation denotes disruption
T19155 873-878 Protein denotes NFAT5
T19154 829-841 Protein denotes NF-κB site I
T19153 760-767 Protein denotes DNase I
T19152 663-672 Positive_regulation denotes increased
T19151 593-597 Negative_regulation denotes loss
T19150 679-686 Binding denotes binding
T19149 607-614 Binding denotes binding
T19148 673-678 Protein denotes NFAT5
T19147 601-606 Protein denotes NF-κB
T19146 553-571 Protein denotes NFAT5 binding site
T19145 527-539 Protein denotes NF-κB site I
T19144 466-473 Positive_regulation denotes enhance
T19143 485-496 Binding denotes recruitment
T19142 474-484 Protein denotes Sp protein
T19141 437-453 Protein denotes Sp binding sites
T19140 357-382 Protein denotes NF-κB site I binding site
T19139 181-193 Protein denotes NF-κB site I
T19138 82-95 Protein denotes NF-κB site II
R13957 T19140 T19144 causeOf NF-κB site I binding site,enhance
R13958 T19142 T19143 themeOf Sp protein,recruitment
R13959 T19143 T19144 themeOf recruitment,enhance
R13960 T19147 T19149 themeOf NF-κB,binding
R13961 T19148 T19150 themeOf NFAT5,binding
R13962 T19149 T19151 themeOf binding,loss
R13963 T19150 T19152 themeOf binding,increased
R13964 T19154 T19156 themeOf NF-κB site I,disruption
R13965 T19155 T19157 themeOf NFAT5,binding
R13966 T19157 T19158 themeOf binding,enhanced

testone

Id Subject Object Predicate Lexical cue
T17086 862-869 Binding denotes binding
T17085 815-825 Negative_regulation denotes disruption
T17084 679-686 Binding denotes binding
T17083 663-672 Positive_regulation denotes increased
T17082 607-614 Binding denotes binding
T17081 593-597 Negative_regulation denotes loss
T17080 466-473 Positive_regulation denotes enhance
T17079 167-177 Negative_regulation denotes disruption
T17042 873-878 Protein denotes NFAT5
T17041 760-767 Protein denotes DNase I
T17040 673-678 Protein denotes NFAT5
R12471 T17040 T17084 themeOf NFAT5,binding
R12472 T17042 T17086 themeOf NFAT5,binding
R12485 T17082 T17081 themeOf binding,loss
R12486 T17084 T17083 themeOf binding,increased

test3

Id Subject Object Predicate Lexical cue
T17173 873-878 Protein denotes NFAT5
T17172 862-869 Binding denotes binding
T17171 760-767 Protein denotes DNase I
T17170 679-686 Binding denotes binding
T17169 673-678 Protein denotes NFAT5
T17119 873-878 Protein denotes NFAT5
T17118 760-767 Protein denotes DNase I
T17117 673-678 Protein denotes NFAT5
R12499 T17169 T17170 themeOf NFAT5,binding
R12500 T17173 T17172 themeOf NFAT5,binding