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PMC:3320587 / 48558-48899 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18059 327-340 NN denotes transcription
T18058 319-326 VB denotes driving
T18057 316-318 IN denotes in
T18056 310-315 NN denotes roles
T18055 301-309 JJ denotes distinct
T18054 296-300 VB denotes have
T18053 290-295 NN denotes sites
T18052 286-289 CD denotes two
T18051 280-285 DT denotes these
T18050 275-279 IN denotes that
T18049 269-274 VB denotes shown
T18048 258-268 RB denotes previously
T18047 253-257 VB denotes have
T18046 246-252 NN denotes assays
T18045 237-245 NN denotes reporter
T18044 227-236 JJ denotes synthetic
T18043 225-226 -COMMA- denotes ,
T18042 217-225 NN denotes findings
T18041 211-216 DT denotes these
T18040 206-210 IN denotes with
T18039 195-205 JJ denotes Consistent
T18038 192-194 NN denotes I.
T18037 187-191 NN denotes site
T18036 181-186 NN denotes NF-κB
T18035 178-180 IN denotes of
T18034 167-177 NN denotes disruption
T18033 162-166 IN denotes than
T18032 150-161 NN denotes replication
T18031 144-149 NN denotes virus
T18030 141-143 IN denotes of
T18029 129-140 NN denotes suppression
T18028 121-128 JJ denotes greater
T18027 118-120 IN denotes in
T18026 109-117 VB denotes resulted
T18025 96-108 RB denotes consistently
T18024 93-95 CD denotes II
T18023 88-92 NN denotes site
T18022 82-87 NN denotes NF-κB
T18021 79-81 IN denotes of
T18020 68-78 NN denotes disruption
T18019 66-67 -COMMA- denotes ,
T18018 54-66 NN denotes co-infection
T18017 50-53 NN denotes MTb
T18016 47-49 IN denotes of
T18015 38-46 NN denotes presence
T18014 34-37 CC denotes and
T18013 26-33 NN denotes absence
T18012 22-25 DT denotes the
T18011 19-21 IN denotes in
T18010 14-18 CC denotes both
T18009 12-13 -COMMA- denotes ,
T18008 0-12 RB denotes Intriguingly
R13009 T18011 T18010 arg1Of in,both
R13010 T18013 T18014 arg1Of absence,and
R13011 T18014 T18011 arg2Of and,in
R13012 T18014 T18012 arg1Of and,the
R13013 T18014 T18016 arg1Of and,of
R13014 T18015 T18014 arg2Of presence,and
R13015 T18018 T18016 arg2Of co-infection,of
R13016 T18018 T18017 arg1Of co-infection,MTb
R13017 T18020 T18021 arg1Of disruption,of
R13018 T18020 T18026 arg1Of disruption,resulted
R13019 T18023 T18021 arg2Of site,of
R13020 T18023 T18022 arg1Of site,NF-κB
R13021 T18023 T18024 arg1Of site,II
R13022 T18026 T18008 arg1Of resulted,Intriguingly
R13023 T18026 T18009 arg1Of resulted,","
R13024 T18026 T18011 arg1Of resulted,in
R13025 T18026 T18019 arg1Of resulted,","
R13026 T18026 T18025 arg1Of resulted,consistently
R13027 T18026 T18027 arg1Of resulted,in
R13028 T18029 T18027 arg2Of suppression,in
R13029 T18029 T18028 arg1Of suppression,greater
R13030 T18029 T18030 arg1Of suppression,of
R13031 T18029 T18033 arg1Of suppression,than
R13032 T18032 T18030 arg2Of replication,of
R13033 T18032 T18031 arg1Of replication,virus
R13034 T18034 T18035 arg1Of disruption,of
R13035 T18034 T18047 arg1Of disruption,have
R13036 T18034 T18049 arg1Of disruption,shown
R13037 T18038 T18035 arg2Of I.,of
R13038 T18038 T18036 arg1Of I.,NF-κB
R13039 T18038 T18037 arg1Of I.,site
R13040 T18038 T18039 arg1Of I.,Consistent
R13041 T18039 T18040 arg1Of Consistent,with
R13042 T18042 T18040 arg2Of findings,with
R13043 T18042 T18041 arg1Of findings,these
R13044 T18042 T18043 arg1Of findings,","
R13045 T18046 T18043 arg2Of assays,","
R13046 T18046 T18044 arg1Of assays,synthetic
R13047 T18046 T18045 arg1Of assays,reporter
R13048 T18049 T18033 arg2Of shown,than
R13049 T18049 T18047 arg2Of shown,have
R13050 T18049 T18048 arg1Of shown,previously
R13051 T18053 T18051 arg1Of sites,these
R13052 T18053 T18052 arg1Of sites,two
R13053 T18053 T18054 arg1Of sites,have
R13054 T18054 T18049 arg2Of have,shown
R13055 T18054 T18050 arg1Of have,that
R13056 T18054 T18057 arg1Of have,in
R13057 T18056 T18054 arg2Of roles,have
R13058 T18056 T18055 arg1Of roles,distinct
R13059 T18058 T18057 arg2Of driving,in
R13060 T18059 T18058 arg2Of transcription,driving

GO-BP

Id Subject Object Predicate Lexical cue
T17379 327-340 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T17220 0-341 Sentence denotes Intriguingly, both in the absence and presence of MTb co-infection, disruption of NF-κB site II consistently resulted in greater suppression of virus replication than disruption of NF-κB site I. Consistent with these findings, synthetic reporter assays have previously shown that these two sites have distinct roles in driving transcription.
T287 0-194 Sentence denotes Intriguingly, both in the absence and presence of MTb co-infection, disruption of NF-κB site II consistently resulted in greater suppression of virus replication than disruption of NF-κB site I.
T288 195-341 Sentence denotes Consistent with these findings, synthetic reporter assays have previously shown that these two sites have distinct roles in driving transcription.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20886 181-186 Protein denotes NF-κB
T20863 50-53 Protein denotes MTb
T20858 82-87 Protein denotes NF-κB
T20823 79-95 Entity denotes of NF-κB site II
T20815 280-295 Entity denotes these two sites
T20772 79-95 Entity denotes of NF-κB site II
T20769 178-225 Entity denotes of NF-κB site I. Consistent with these findings
T20922 47-66 Regulation denotes of MTb co-infection
R15439 T20863 T20922 themeOf MTb,of MTb co-infection

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19894 340-341 . denotes .
T19893 327-340 NN denotes transcription
T19892 319-326 VBG denotes driving
T19891 316-318 IN denotes in
T19890 310-315 NNS denotes roles
T19889 301-309 JJ denotes distinct
T19888 296-300 VBP denotes have
T19887 290-295 NNS denotes sites
T19886 286-289 CD denotes two
T19885 280-285 DT denotes these
T19884 275-279 IN denotes that
T19883 269-274 VBN denotes shown
T19882 258-268 RB denotes previously
T19881 253-257 VBP denotes have
T19880 246-252 NNS denotes assays
T19879 237-245 NN denotes reporter
T19878 227-236 JJ denotes synthetic
T19877 225-226 , denotes ,
T19876 217-225 NNS denotes findings
T19875 211-216 DT denotes these
T19874 206-210 IN denotes with
T19873 195-205 NNP denotes Consistent
T19872 192-194 NN denotes I.
T19871 187-191 NN denotes site
T19870 181-186 NNP denotes NF-κB
T19869 178-180 IN denotes of
T19868 167-177 NN denotes disruption
T19867 162-166 IN denotes than
T19866 150-161 NN denotes replication
T19865 144-149 NN denotes virus
T19864 141-143 IN denotes of
T19863 129-140 NN denotes suppression
T19862 121-128 JJR denotes greater
T19861 118-120 IN denotes in
T19860 109-117 VBD denotes resulted
T19859 96-108 RB denotes consistently
T19858 93-95 NNP denotes II
T19857 88-92 NN denotes site
T19856 82-87 NNP denotes NF-κB
T19855 79-81 IN denotes of
T19854 68-78 NN denotes disruption
T19853 66-67 , denotes ,
T19852 54-66 NN denotes co-infection
T19851 50-53 NNP denotes MTb
T19850 47-49 IN denotes of
T19849 38-46 NN denotes presence
T19848 34-37 CC denotes and
T19847 26-33 NN denotes absence
T19846 22-25 DT denotes the
T19845 19-21 IN denotes in
T19844 14-18 DT denotes both
T19843 12-13 , denotes ,
T19842 0-12 RB denotes Intriguingly
R14535 T19842 T19860 advmod Intriguingly,resulted
R14536 T19843 T19860 punct ",",resulted
R14537 T19844 T19845 advmod both,in
R14538 T19845 T19860 prep in,resulted
R14539 T19846 T19847 det the,absence
R14540 T19847 T19845 pobj absence,in
R14541 T19848 T19847 cc and,absence
R14542 T19849 T19847 conj presence,absence
R14543 T19850 T19847 prep of,absence
R14544 T19851 T19852 compound MTb,co-infection
R14545 T19852 T19850 pobj co-infection,of
R14546 T19853 T19852 punct ",",co-infection
R14547 T19854 T19860 nsubj disruption,resulted
R14548 T19855 T19854 prep of,disruption
R14549 T19856 T19858 compound NF-κB,II
R14550 T19857 T19858 compound site,II
R14551 T19858 T19855 pobj II,of
R14552 T19859 T19860 advmod consistently,resulted
R14553 T19860 T19883 ccomp resulted,shown
R14554 T19861 T19860 prep in,resulted
R14555 T19862 T19863 amod greater,suppression
R14556 T19863 T19861 pobj suppression,in
R14557 T19864 T19863 prep of,suppression
R14558 T19865 T19866 compound virus,replication
R14559 T19866 T19864 pobj replication,of
R14560 T19867 T19860 prep than,resulted
R14561 T19868 T19867 pobj disruption,than
R14562 T19869 T19868 prep of,disruption
R14563 T19870 T19873 compound NF-κB,Consistent
R14564 T19871 T19872 compound site,I.
R14565 T19872 T19873 compound I.,Consistent
R14566 T19873 T19869 pobj Consistent,of
R14567 T19874 T19868 prep with,disruption
R14568 T19875 T19876 det these,findings
R14569 T19876 T19874 pobj findings,with
R14570 T19877 T19883 punct ",",shown
R14571 T19878 T19879 amod synthetic,reporter
R14572 T19879 T19880 compound reporter,assays
R14573 T19880 T19883 nsubj assays,shown
R14574 T19881 T19883 aux have,shown
R14575 T19882 T19883 advmod previously,shown
R14576 T19883 T19883 ROOT shown,shown
R14577 T19884 T19888 mark that,have
R14578 T19885 T19887 det these,sites
R14579 T19886 T19887 nummod two,sites
R14580 T19887 T19888 nsubj sites,have
R14581 T19888 T19883 ccomp have,shown
R14582 T19889 T19890 amod distinct,roles
R14583 T19890 T19888 dobj roles,have
R14584 T19891 T19888 prep in,have
R14585 T19892 T19891 pcomp driving,in
R14586 T19893 T19892 dobj transcription,driving
R14587 T19894 T19883 punct .,shown

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19139 181-193 Protein denotes NF-κB site I
T19138 82-95 Protein denotes NF-κB site II

testone

Id Subject Object Predicate Lexical cue
T17079 167-177 Negative_regulation denotes disruption