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PMC:3320587 / 47820-48557 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18007 725-736 NN denotes replication
T18006 719-724 NN denotes HIV-1
T18005 707-718 JJ denotes MTb-induced
T18004 703-706 IN denotes for
T18003 694-702 VB denotes required
T18002 690-693 VB denotes are
T18001 682-689 NN denotes factors
T18000 677-681 DT denotes both
T17999 675-676 -COMMA- denotes ,
T17998 671-675 RB denotes Thus
T17997 664-669 NN denotes sites
T17996 658-663 NN denotes NF-κB
T17995 654-657 CD denotes two
T17994 650-653 DT denotes the
T17993 647-649 IN denotes of
T17992 636-646 NN denotes disruption
T17991 632-635 IN denotes for
T17990 621-631 VB denotes compensate
T17989 617-620 RB denotes not
T17988 611-616 MD denotes could
T17987 606-610 NN denotes site
T17986 600-605 NN denotes NFAT5
T17985 593-599 JJ denotes intact
T17984 590-592 DT denotes an
T17983 588-589 -COMMA- denotes ,
T17982 576-588 RB denotes Reciprocally
T17981 562-574 NN denotes co-infection
T17980 558-561 NN denotes MTb
T17979 555-557 IN denotes of
T17978 544-554 NN denotes conditions
T17977 538-543 IN denotes under
T17976 534-537 NN denotes LTR
T17975 530-533 DT denotes the
T17974 527-529 TO denotes to
T17973 519-526 NN denotes binding
T17972 513-518 NN denotes NFAT5
T17971 510-512 IN denotes of
T17970 505-509 NN denotes loss
T17969 501-504 DT denotes the
T17968 497-500 IN denotes for
T17967 486-496 VB denotes compensate
T17966 483-485 TO denotes to
T17965 472-482 JJ denotes sufficient
T17964 468-471 RB denotes not
T17963 465-467 VB denotes is
T17962 461-464 NN denotes LTR
T17961 455-460 JJ denotes viral
T17960 451-454 DT denotes the
T17959 448-450 TO denotes to
T17958 440-447 NN denotes binding
T17957 434-439 NN denotes NF-κB
T17956 432-433 -COMMA- denotes ,
T17955 428-432 RB denotes Thus
T17954 423-426 NN denotes MTb
T17953 420-422 IN denotes of
T17952 412-419 NN denotes isolate
T17951 403-411 JJ denotes clinical
T17950 401-402 DT denotes a
T17949 396-400 IN denotes with
T17948 384-395 VB denotes co-infected
T17947 380-383 NN denotes MDM
T17946 377-379 CC denotes or
T17945 372-376 NN denotes PBMC
T17944 369-371 IN denotes in
T17943 357-368 NN denotes replication
T17942 351-356 NN denotes virus
T17941 343-350 VB denotes reduced
T17940 329-342 RB denotes significantly
T17939 322-328 NN denotes clones
T17938 312-321 JJ denotes molecular
T17937 301-311 JJ denotes infectious
T17936 299-300 NN denotes C
T17935 291-298 NN denotes subtype
T17934 288-290 CC denotes or
T17933 286-287 NN denotes B
T17932 278-285 NN denotes subtype
T17931 268-277 JJ denotes R5-tropic
T17930 265-267 IN denotes in
T17929 263-264 -RRB- denotes )
T17928 262-263 NN denotes s
T17927 261-262 -LRB- denotes (
T17926 257-261 NN denotes site
T17925 249-256 NN denotes binding
T17924 243-248 NN denotes NFAT5
T17923 239-242 DT denotes the
T17922 236-238 IN denotes of
T17921 225-235 NN denotes disruption
T17920 216-224 JJ denotes specific
T17919 211-215 IN denotes that
T17918 205-210 VB denotes found
T17917 202-204 PRP denotes We
T17916 192-200 VB denotes elevated
T17915 188-191 VB denotes are
T17914 180-187 NN denotes nucleus
T17913 176-179 DT denotes the
T17912 173-175 IN denotes in
T17911 166-172 NN denotes levels
T17910 160-165 NN denotes NF-κB
T17909 155-159 WRB denotes when
T17908 153-154 -COMMA- denotes ,
T17907 141-153 NN denotes co-infection
T17906 137-140 NN denotes MTb
T17905 134-136 IN denotes by
T17904 123-133 NN denotes activation
T17903 120-122 IN denotes of
T17902 109-119 NN denotes conditions
T17901 103-108 IN denotes under
T17900 91-102 NN denotes replication
T17899 85-90 NN denotes HIV-1
T17898 82-84 IN denotes in
T17897 74-81 NN denotes p50/p65
T17896 68-73 NN denotes NF-κB
T17895 64-67 CC denotes and
T17894 58-63 NN denotes NFAT5
T17893 55-57 IN denotes of
T17892 49-54 NN denotes roles
T17891 40-48 JJ denotes relative
T17890 36-39 DT denotes the
T17889 27-35 VB denotes examined
T17888 18-26 RB denotes directly
T17887 15-17 PRP denotes we
T17886 8-14 NN denotes report
T17885 3-7 DT denotes this
T17884 0-2 IN denotes In
R12884 T17886 T17884 arg2Of report,In
R12885 T17886 T17885 arg1Of report,this
R12886 T17887 T17889 arg1Of we,examined
R12887 T17889 T17884 arg1Of examined,In
R12888 T17889 T17888 arg1Of examined,directly
R12889 T17889 T17901 arg1Of examined,under
R12890 T17892 T17889 arg2Of roles,examined
R12891 T17892 T17890 arg1Of roles,the
R12892 T17892 T17891 arg1Of roles,relative
R12893 T17892 T17893 arg1Of roles,of
R12894 T17892 T17898 arg1Of roles,in
R12895 T17894 T17895 arg1Of NFAT5,and
R12896 T17895 T17893 arg2Of and,of
R12897 T17897 T17895 arg2Of p50/p65,and
R12898 T17897 T17896 arg1Of p50/p65,NF-κB
R12899 T17900 T17898 arg2Of replication,in
R12900 T17900 T17899 arg1Of replication,HIV-1
R12901 T17902 T17901 arg2Of conditions,under
R12902 T17902 T17903 arg1Of conditions,of
R12903 T17904 T17903 arg2Of activation,of
R12904 T17904 T17905 arg1Of activation,by
R12905 T17907 T17905 arg2Of co-infection,by
R12906 T17907 T17906 arg1Of co-infection,MTb
R12907 T17907 T17908 arg1Of co-infection,","
R12908 T17907 T17909 arg1Of co-infection,when
R12909 T17911 T17910 arg1Of levels,NF-κB
R12910 T17911 T17912 arg1Of levels,in
R12911 T17911 T17915 arg1Of levels,are
R12912 T17911 T17916 arg2Of levels,elevated
R12913 T17914 T17912 arg2Of nucleus,in
R12914 T17914 T17913 arg1Of nucleus,the
R12915 T17916 T17909 arg2Of elevated,when
R12916 T17916 T17915 arg2Of elevated,are
R12917 T17917 T17918 arg1Of We,found
R12918 T17921 T17920 arg1Of disruption,specific
R12919 T17921 T17922 arg1Of disruption,of
R12920 T17921 T17930 arg1Of disruption,in
R12921 T17921 T17941 arg1Of disruption,reduced
R12922 T17926 T17922 arg2Of site,of
R12923 T17926 T17923 arg1Of site,the
R12924 T17926 T17924 arg1Of site,NFAT5
R12925 T17926 T17925 arg1Of site,binding
R12926 T17926 T17927 arg1Of site,(
R12927 T17928 T17927 arg2Of s,(
R12928 T17929 T17927 arg3Of ),(
R12929 T17933 T17934 arg1Of B,or
R12930 T17935 T17934 arg2Of subtype,or
R12931 T17939 T17930 arg2Of clones,in
R12932 T17939 T17931 arg1Of clones,R5-tropic
R12933 T17939 T17932 arg1Of clones,subtype
R12934 T17939 T17933 arg1Of clones,B
R12935 T17939 T17935 arg1Of clones,subtype
R12936 T17939 T17936 arg1Of clones,C
R12937 T17939 T17937 arg1Of clones,infectious
R12938 T17939 T17938 arg1Of clones,molecular
R12939 T17941 T17918 arg2Of reduced,found
R12940 T17941 T17919 arg1Of reduced,that
R12941 T17941 T17940 arg1Of reduced,significantly
R12942 T17943 T17941 arg2Of replication,reduced
R12943 T17943 T17942 arg1Of replication,virus
R12944 T17943 T17944 arg1Of replication,in
R12945 T17945 T17946 arg1Of PBMC,or
R12946 T17946 T17944 arg2Of or,in
R12947 T17946 T17948 arg2Of or,co-infected
R12948 T17947 T17946 arg2Of MDM,or
R12949 T17948 T17949 arg1Of co-infected,with
R12950 T17952 T17949 arg2Of isolate,with
R12951 T17952 T17950 arg1Of isolate,a
R12952 T17952 T17951 arg1Of isolate,clinical
R12953 T17952 T17953 arg1Of isolate,of
R12954 T17954 T17953 arg2Of MTb,of
R12955 T17958 T17957 arg1Of binding,NF-κB
R12956 T17958 T17959 arg1Of binding,to
R12957 T17958 T17963 arg1Of binding,is
R12958 T17958 T17965 arg1Of binding,sufficient
R12959 T17958 T17967 arg1Of binding,compensate
R12960 T17962 T17959 arg2Of LTR,to
R12961 T17962 T17960 arg1Of LTR,the
R12962 T17962 T17961 arg1Of LTR,viral
R12963 T17963 T17955 arg1Of is,Thus
R12964 T17963 T17956 arg1Of is,","
R12965 T17963 T17964 arg1Of is,not
R12966 T17963 T17966 modOf is,to
R12967 T17965 T17963 arg2Of sufficient,is
R12968 T17967 T17966 arg1Of compensate,to
R12969 T17967 T17968 arg1Of compensate,for
R12970 T17967 T17977 arg1Of compensate,under
R12971 T17970 T17968 arg2Of loss,for
R12972 T17970 T17969 arg1Of loss,the
R12973 T17970 T17971 arg1Of loss,of
R12974 T17970 T17974 arg1Of loss,to
R12975 T17973 T17971 arg2Of binding,of
R12976 T17973 T17972 arg1Of binding,NFAT5
R12977 T17976 T17974 arg2Of LTR,to
R12978 T17976 T17975 arg1Of LTR,the
R12979 T17978 T17977 arg2Of conditions,under
R12980 T17978 T17979 arg1Of conditions,of
R12981 T17981 T17979 arg2Of co-infection,of
R12982 T17981 T17980 arg1Of co-infection,MTb
R12983 T17987 T17984 arg1Of site,an
R12984 T17987 T17985 arg1Of site,intact
R12985 T17987 T17986 arg1Of site,NFAT5
R12986 T17987 T17988 arg1Of site,could
R12987 T17987 T17990 arg1Of site,compensate
R12988 T17990 T17982 arg1Of compensate,Reciprocally
R12989 T17990 T17983 arg1Of compensate,","
R12990 T17990 T17988 arg2Of compensate,could
R12991 T17990 T17989 arg1Of compensate,not
R12992 T17990 T17991 arg1Of compensate,for
R12993 T17992 T17991 arg2Of disruption,for
R12994 T17992 T17993 arg1Of disruption,of
R12995 T17997 T17993 arg2Of sites,of
R12996 T17997 T17994 arg1Of sites,the
R12997 T17997 T17995 arg1Of sites,two
R12998 T17997 T17996 arg1Of sites,NF-κB
R12999 T18001 T18000 arg1Of factors,both
R13000 T18001 T18002 arg1Of factors,are
R13001 T18001 T18003 arg2Of factors,required
R13002 T18003 T17998 arg1Of required,Thus
R13003 T18003 T17999 arg1Of required,","
R13004 T18003 T18002 arg2Of required,are
R13005 T18003 T18004 arg1Of required,for
R13006 T18007 T18004 arg2Of replication,for
R13007 T18007 T18005 arg1Of replication,MTb-induced
R13008 T18007 T18006 arg1Of replication,HIV-1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17347 513-518 Protein denotes NFAT5
T17346 78-81 Protein denotes p65
T17345 74-77 Protein denotes p50
T17344 58-63 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18855 78-81 http://www.uniprot.org/uniprot/P21579 denotes p65
T18853 78-81 http://www.uniprot.org/uniprot/Q04206 denotes p65
T18851 74-77 http://www.uniprot.org/uniprot/P19838 denotes p50
T18828 600-605 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18827 513-518 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18826 243-248 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18825 58-63 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-MF

Id Subject Object Predicate Lexical cue
T17450 434-447 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T17437 519-526 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17436 440-447 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T17435 249-256 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T17463 180-187 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

sentences

Id Subject Object Predicate Lexical cue
T17219 671-737 Sentence denotes Thus, both factors are required for MTb-induced HIV-1 replication.
T17218 576-670 Sentence denotes Reciprocally, an intact NFAT5 site could not compensate for disruption of the two NF-κB sites.
T17217 428-575 Sentence denotes Thus, NF-κB binding to the viral LTR is not sufficient to compensate for the loss of NFAT5 binding to the LTR under conditions of MTb co-infection.
T17216 202-427 Sentence denotes We found that specific disruption of the NFAT5 binding site(s) in R5-tropic subtype B or subtype C infectious molecular clones significantly reduced virus replication in PBMC or MDM co-infected with a clinical isolate of MTb.
T17215 0-201 Sentence denotes In this report we directly examined the relative roles of NFAT5 and NF-κB p50/p65 in HIV-1 replication under conditions of activation by MTb co-infection, when NF-κB levels in the nucleus are elevated.
T282 0-201 Sentence denotes In this report we directly examined the relative roles of NFAT5 and NF-κB p50/p65 in HIV-1 replication under conditions of activation by MTb co-infection, when NF-κB levels in the nucleus are elevated.
T283 202-427 Sentence denotes We found that specific disruption of the NFAT5 binding site(s) in R5-tropic subtype B or subtype C infectious molecular clones significantly reduced virus replication in PBMC or MDM co-infected with a clinical isolate of MTb.
T284 428-575 Sentence denotes Thus, NF-κB binding to the viral LTR is not sufficient to compensate for the loss of NFAT5 binding to the LTR under conditions of MTb co-infection.
T285 576-670 Sentence denotes Reciprocally, an intact NFAT5 site could not compensate for disruption of the two NF-κB sites.
T286 671-737 Sentence denotes Thus, both factors are required for MTb-induced HIV-1 replication.

simple1

Id Subject Object Predicate Lexical cue
T17485 513-518 Protein denotes NFAT5
T17484 78-81 Protein denotes p65
T17483 74-77 Protein denotes p50
T17482 58-63 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20731 505-509 Negative_regulation denotes loss
T20730 519-526 Binding denotes binding
T20694 513-518 Protein denotes NFAT5
T20693 78-81 Protein denotes p65
T20692 74-77 Protein denotes p50
T20691 58-63 Protein denotes NFAT5
R15384 T20694 T20730 themeOf NFAT5,binding
R15414 T20730 T20731 themeOf binding,loss

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19025 78-81 Protein denotes p65
T19024 74-77 Protein denotes p50
T19023 58-63 Protein denotes NFAT5
T19026 513-518 Protein denotes NFAT5
T19063 519-526 Binding denotes binding
T19062 505-509 Negative_regulation denotes loss
R13908 T19026 T19063 themeOf NFAT5,binding
R13929 T19063 T19062 themeOf binding,loss

DLUT931

Id Subject Object Predicate Lexical cue
T18984 505-509 Negative_regulation denotes loss
T18983 519-526 Binding denotes binding
T18946 513-518 Protein denotes NFAT5
T18945 78-81 Protein denotes p65
T18944 74-77 Protein denotes p50
T18943 58-63 Protein denotes NFAT5
R13891 T18983 T18984 themeOf binding,loss
R13871 T18946 T18983 themeOf NFAT5,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20938 510-537 Binding denotes of NFAT5 binding to the LTR
T20897 74-81 Protein denotes p50/p65
T20892 236-264 Entity denotes of the NFAT5 binding site(s)
T20881 707-718 Protein denotes MTb-induced
T20856 558-561 Protein denotes MTb
T20850 372-376 Entity denotes PBMC
T20848 160-165 Protein denotes NF-κB
T20840 74-81 Protein denotes p50/p65
T20839 78-81 Protein denotes p65
T20836 647-669 Entity denotes of the two NF-κB sites
T20832 268-277 Entity denotes R5-tropic
T20829 513-518 Protein denotes NFAT5
T20828 590-610 Entity denotes an intact NFAT5 site
T20816 380-383 Protein denotes MDM
T20807 176-187 Entity denotes the nucleus
T20806 243-248 Protein denotes NFAT5
T20798 423-426 Protein denotes MTb
T20789 600-605 Protein denotes NFAT5
T20788 58-63 Protein denotes NFAT5
T20774 658-663 Protein denotes NF-κB
T20921 236-264 Binding denotes of the NFAT5 binding site(s)
T20911 134-153 Regulation denotes by MTb co-infection
T20908 558-574 Regulation denotes MTb co-infection
T20905 137-140 Protein denotes MTb
R15429 T20829 T20938 themeOf NFAT5,of NFAT5 binding to the LTR
R15435 T20856 T20908 themeOf MTb,MTb co-infection
R15448 T20892 T20921 themeOf of the NFAT5 binding site(s),of the NFAT5 binding site(s)
R15452 T20905 T20911 themeOf MTb,by MTb co-infection

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19823 632-635 IN denotes for
T19822 621-631 VB denotes compensate
T19821 617-620 RB denotes not
T19820 611-616 MD denotes could
T19819 606-610 NN denotes site
T19818 600-605 NNP denotes NFAT5
T19817 593-599 JJ denotes intact
T19816 590-592 DT denotes an
T19815 588-589 , denotes ,
T19814 576-588 RB denotes Reciprocally
T19813 574-575 . denotes .
T19812 562-574 NN denotes co-infection
T19811 558-561 NNP denotes MTb
T19810 555-557 IN denotes of
T19809 544-554 NNS denotes conditions
T19808 538-543 IN denotes under
T19807 534-537 NNP denotes LTR
T19806 530-533 DT denotes the
T19805 527-529 TO denotes to
T19804 519-526 JJ denotes binding
T19803 513-518 CD denotes NFAT5
T19802 510-512 IN denotes of
T19801 505-509 NN denotes loss
T19800 501-504 DT denotes the
T19799 497-500 IN denotes for
T19798 486-496 VB denotes compensate
T19797 483-485 TO denotes to
T19796 472-482 JJ denotes sufficient
T19795 468-471 RB denotes not
T19794 465-467 VBZ denotes is
T19793 461-464 NNP denotes LTR
T19792 455-460 JJ denotes viral
T19791 451-454 DT denotes the
T19790 448-450 TO denotes to
T19789 440-447 JJ denotes binding
T19788 434-439 JJ denotes NF-κB
T19787 432-433 , denotes ,
T19786 428-432 RB denotes Thus
T19785 426-427 . denotes .
T19784 423-426 NNP denotes MTb
T19783 420-422 IN denotes of
T19782 412-419 VB denotes isolate
T19781 403-411 JJ denotes clinical
T19780 401-402 DT denotes a
T19779 396-400 IN denotes with
T19778 384-395 VBD denotes co-infected
T19777 380-383 NNP denotes MDM
T19776 377-379 CC denotes or
T19775 372-376 NNP denotes PBMC
T19774 369-371 IN denotes in
T19773 357-368 NN denotes replication
T19772 351-356 NN denotes virus
T19771 343-350 VBN denotes reduced
T19770 329-342 RB denotes significantly
T19769 322-328 NNS denotes clones
T19768 312-321 JJ denotes molecular
T19767 301-311 JJ denotes infectious
T19766 299-300 NNP denotes C
T19765 291-298 NN denotes subtype
T19764 288-290 CC denotes or
T19763 286-287 NN denotes B
T19762 278-285 NN denotes subtype
T19761 268-277 JJ denotes R5-tropic
T19760 265-267 IN denotes in
T19759 263-264 -RRB- denotes )
T19758 262-263 PRP denotes s
T19757 261-262 -LRB- denotes (
T19756 257-261 NN denotes site
T19755 249-256 JJ denotes binding
T19754 243-248 NNP denotes NFAT5
T19753 239-242 DT denotes the
T19752 236-238 IN denotes of
T19751 225-235 NN denotes disruption
T19750 216-224 JJ denotes specific
T19749 211-215 IN denotes that
T19748 205-210 VBD denotes found
T19747 202-204 PRP denotes We
T19746 200-201 . denotes .
T19745 192-200 VBN denotes elevated
T19744 188-191 VBP denotes are
T19743 180-187 NN denotes nucleus
T19742 176-179 DT denotes the
T19741 173-175 IN denotes in
T19740 166-172 NNS denotes levels
T19739 160-165 JJ denotes NF-κB
T19738 155-159 WRB denotes when
T19737 153-154 , denotes ,
T19736 141-153 NN denotes co-infection
T19735 137-140 NNP denotes MTb
T19734 134-136 IN denotes by
T19733 123-133 NN denotes activation
T19732 120-122 IN denotes of
T19731 109-119 NNS denotes conditions
T19730 103-108 IN denotes under
T19729 91-102 NN denotes replication
T19728 85-90 JJ denotes HIV-1
T19727 82-84 IN denotes in
T19726 74-81 NNS denotes p50/p65
T19725 68-73 NNP denotes NF-κB
T19724 64-67 CC denotes and
T19723 58-63 NNP denotes NFAT5
T19722 55-57 IN denotes of
T19721 49-54 NNS denotes roles
T19720 40-48 JJ denotes relative
T19719 36-39 DT denotes the
T19718 27-35 VBD denotes examined
T19717 18-26 RB denotes directly
T19716 15-17 PRP denotes we
T19715 8-14 NN denotes report
T19714 3-7 DT denotes this
T19713 0-2 IN denotes In
T19841 736-737 . denotes .
T19840 725-736 NN denotes replication
T19839 719-724 NN denotes HIV-1
T19838 707-718 JJ denotes MTb-induced
T19837 703-706 IN denotes for
T19836 694-702 VBN denotes required
T19835 690-693 VBP denotes are
T19834 682-689 NNS denotes factors
T19833 677-681 DT denotes both
T19832 675-676 , denotes ,
T19831 671-675 RB denotes Thus
T19830 669-670 . denotes .
T19829 664-669 NNS denotes sites
T19828 658-663 JJ denotes NF-κB
T19827 654-657 CD denotes two
T19826 650-653 DT denotes the
T19825 647-649 IN denotes of
T19824 636-646 NN denotes disruption
R14406 T19713 T19718 prep In,examined
R14407 T19714 T19715 det this,report
R14408 T19715 T19713 pobj report,In
R14409 T19716 T19718 nsubj we,examined
R14410 T19717 T19718 advmod directly,examined
R14411 T19718 T19718 ROOT examined,examined
R14412 T19719 T19721 det the,roles
R14413 T19720 T19721 amod relative,roles
R14414 T19721 T19718 dobj roles,examined
R14415 T19722 T19721 prep of,roles
R14416 T19723 T19722 pobj NFAT5,of
R14417 T19724 T19723 cc and,NFAT5
R14418 T19725 T19723 conj NF-κB,NFAT5
R14419 T19726 T19722 pobj p50/p65,of
R14420 T19727 T19726 prep in,p50/p65
R14421 T19728 T19729 compound HIV-1,replication
R14422 T19729 T19727 pobj replication,in
R14423 T19730 T19721 prep under,roles
R14424 T19731 T19730 pobj conditions,under
R14425 T19732 T19731 prep of,conditions
R14426 T19733 T19732 pobj activation,of
R14427 T19734 T19718 prep by,examined
R14428 T19735 T19736 compound MTb,co-infection
R14429 T19736 T19734 pobj co-infection,by
R14430 T19737 T19736 punct ",",co-infection
R14431 T19738 T19745 advmod when,elevated
R14432 T19739 T19740 amod NF-κB,levels
R14433 T19740 T19745 nsubjpass levels,elevated
R14434 T19741 T19740 prep in,levels
R14435 T19742 T19743 det the,nucleus
R14436 T19743 T19741 pobj nucleus,in
R14437 T19744 T19745 auxpass are,elevated
R14438 T19745 T19718 advcl elevated,examined
R14439 T19746 T19718 punct .,examined
R14440 T19747 T19748 nsubj We,found
R14441 T19748 T19748 ROOT found,found
R14442 T19749 T19778 mark that,co-infected
R14443 T19750 T19751 amod specific,disruption
R14444 T19751 T19778 nsubj disruption,co-infected
R14445 T19752 T19751 prep of,disruption
R14446 T19753 T19756 det the,site
R14447 T19754 T19756 nmod NFAT5,site
R14448 T19755 T19756 amod binding,site
R14449 T19756 T19752 pobj site,of
R14450 T19757 T19756 punct (,site
R14451 T19758 T19756 appos s,site
R14452 T19759 T19756 punct ),site
R14453 T19760 T19751 prep in,disruption
R14454 T19761 T19763 nmod R5-tropic,B
R14455 T19762 T19763 compound subtype,B
R14456 T19763 T19760 pobj B,in
R14457 T19764 T19763 cc or,B
R14458 T19765 T19766 compound subtype,C
R14459 T19766 T19773 nmod C,replication
R14460 T19767 T19769 amod infectious,clones
R14461 T19768 T19769 amod molecular,clones
R14462 T19769 T19766 dobj clones,C
R14463 T19770 T19771 advmod significantly,reduced
R14464 T19771 T19773 amod reduced,replication
R14465 T19772 T19773 compound virus,replication
R14466 T19773 T19751 conj replication,disruption
R14467 T19774 T19773 prep in,replication
R14468 T19775 T19774 pobj PBMC,in
R14469 T19776 T19775 cc or,PBMC
R14470 T19777 T19775 conj MDM,PBMC
R14471 T19778 T19748 ccomp co-infected,found
R14472 T19779 T19778 prep with,co-infected
R14473 T19780 T19782 det a,isolate
R14474 T19781 T19782 amod clinical,isolate
R14475 T19782 T19779 pobj isolate,with
R14476 T19783 T19782 prep of,isolate
R14477 T19784 T19783 pobj MTb,of
R14478 T19785 T19748 punct .,found
R14479 T19786 T19789 advmod Thus,binding
R14480 T19787 T19789 punct ",",binding
R14481 T19788 T19789 amod NF-κB,binding
R14482 T19789 T19794 acomp binding,is
R14483 T19790 T19789 prep to,binding
R14484 T19791 T19793 det the,LTR
R14485 T19792 T19793 amod viral,LTR
R14486 T19793 T19790 pobj LTR,to
R14487 T19794 T19794 ROOT is,is
R14488 T19795 T19794 neg not,is
R14489 T19796 T19794 acomp sufficient,is
R14490 T19797 T19798 aux to,compensate
R14491 T19798 T19796 xcomp compensate,sufficient
R14492 T19799 T19798 prep for,compensate
R14493 T19800 T19801 det the,loss
R14494 T19801 T19799 pobj loss,for
R14495 T19802 T19801 prep of,loss
R14496 T19803 T19802 pobj NFAT5,of
R14497 T19804 T19801 amod binding,loss
R14498 T19805 T19804 prep to,binding
R14499 T19806 T19807 det the,LTR
R14500 T19807 T19805 pobj LTR,to
R14501 T19808 T19801 prep under,loss
R14502 T19809 T19808 pobj conditions,under
R14503 T19810 T19809 prep of,conditions
R14504 T19811 T19812 compound MTb,co-infection
R14505 T19812 T19810 pobj co-infection,of
R14506 T19813 T19794 punct .,is
R14507 T19814 T19822 advmod Reciprocally,compensate
R14508 T19815 T19822 punct ",",compensate
R14509 T19816 T19819 det an,site
R14510 T19817 T19819 amod intact,site
R14511 T19818 T19819 compound NFAT5,site
R14512 T19819 T19822 nsubj site,compensate
R14513 T19820 T19822 aux could,compensate
R14514 T19821 T19822 neg not,compensate
R14515 T19822 T19822 ROOT compensate,compensate
R14516 T19823 T19822 prep for,compensate
R14517 T19824 T19823 pobj disruption,for
R14518 T19825 T19824 prep of,disruption
R14519 T19826 T19829 det the,sites
R14520 T19827 T19829 nummod two,sites
R14521 T19828 T19829 amod NF-κB,sites
R14522 T19829 T19825 pobj sites,of
R14523 T19830 T19822 punct .,compensate
R14524 T19831 T19836 advmod Thus,required
R14525 T19832 T19836 punct ",",required
R14526 T19833 T19834 det both,factors
R14527 T19834 T19836 nsubjpass factors,required
R14528 T19835 T19836 auxpass are,required
R14529 T19836 T19836 ROOT required,required
R14530 T19837 T19836 prep for,required
R14531 T19838 T19840 amod MTb-induced,replication
R14532 T19839 T19840 compound HIV-1,replication
R14533 T19840 T19837 pobj replication,for
R14534 T19841 T19836 punct .,required

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19129 455-464 Protein denotes viral LTR
T19128 434-439 Protein denotes NF-κB
T19127 243-248 Protein denotes NFAT5
T19126 192-200 Positive_regulation denotes elevated
T19125 160-165 Protein denotes NF-κB
T19124 78-81 Protein denotes p65
T19123 74-77 Protein denotes p50
T19122 68-73 Protein denotes NF-κB
T19121 58-63 Protein denotes NFAT5
T19133 519-526 Binding denotes binding
T19132 440-447 Binding denotes binding
T19131 440-447 Binding denotes binding
T19130 513-518 Protein denotes NFAT5
T19137 636-646 Negative_regulation denotes disruption
T19136 658-669 Protein denotes NF-κB sites
T19135 600-610 Protein denotes NFAT5 site
T19134 505-509 Negative_regulation denotes loss
R13950 T19125 T19126 themeOf NF-κB,elevated
R13951 T19128 T19131 themeOf NF-κB,binding
R13952 T19128 T19132 themeOf NF-κB,binding
R13953 T19129 T19132 themeOf viral LTR,binding
R13954 T19130 T19133 themeOf NFAT5,binding
R13955 T19133 T19134 themeOf binding,loss
R13956 T19136 T19137 themeOf NF-κB sites,disruption

testone

Id Subject Object Predicate Lexical cue
T17078 636-646 Negative_regulation denotes disruption
T17077 621-631 Positive_regulation denotes compensate
T17076 519-526 Binding denotes binding
T17075 505-509 Negative_regulation denotes loss
T17074 440-447 Binding denotes binding
T17039 513-518 Protein denotes NFAT5
T17038 78-81 Protein denotes p65
T17037 74-77 Protein denotes p50
T17036 58-63 Protein denotes NFAT5
R12470 T17039 T17076 themeOf NFAT5,binding
R12483 T17076 T17075 themeOf binding,loss
R12484 T17078 T17077 themeOf disruption,compensate

test3

Id Subject Object Predicate Lexical cue
T17168 513-518 Protein denotes NFAT5
T17167 257-261 Entity denotes site
T17166 78-81 Protein denotes p65
T17165 74-77 Protein denotes p50
T17164 58-63 Protein denotes NFAT5
T17116 513-518 Protein denotes NFAT5
T17115 78-81 Protein denotes p65
T17114 74-77 Protein denotes p50
T17113 58-63 Protein denotes NFAT5