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PMC:3320587 / 4764-5038 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1598 269-273 NN denotes LTRs
T1597 265-268 NN denotes SIV
T1596 261-264 CC denotes and
T1595 255-260 NN denotes HIV-2
T1594 252-254 IN denotes in
T1593 242-251 VB denotes conserved
T1592 237-241 RB denotes also
T1591 234-236 VB denotes is
T1590 230-233 CC denotes and
T1589 228-229 -COMMA- denotes ,
T1588 220-228 NN denotes subtypes
T1587 214-219 NN denotes HIV-1
T1586 210-213 DT denotes all
T1585 203-209 IN denotes across
T1584 193-202 VB denotes conserved
T1583 186-192 RB denotes highly
T1582 183-185 VB denotes is
T1581 178-182 WDT denotes that
T1580 174-177 NN denotes LTR
T1579 168-173 NN denotes HIV-1
T1578 164-167 DT denotes the
T1577 157-163 IN denotes within
T1576 152-156 NN denotes site
T1575 150-151 DT denotes a
T1574 147-149 TO denotes to
T1573 141-146 VB denotes binds
T1572 139-140 -COMMA- denotes ,
T1571 138-139 -RRB- denotes )
T1570 132-138 NN denotes TonEBP
T1569 129-131 IN denotes as
T1568 123-128 VB denotes known
T1567 118-122 RB denotes also
T1566 117-118 -LRB- denotes (
T1565 111-116 NN denotes NFAT5
T1564 109-110 -COMMA- denotes ,
T1563 103-109 NN denotes family
T1562 101-102 -RRB- denotes )
T1561 97-101 NN denotes NFAT
T1560 96-97 -LRB- denotes (
T1559 90-95 NN denotes cells
T1558 88-89 NN denotes T
T1557 78-87 VB denotes activated
T1556 75-77 IN denotes of
T1555 68-74 NN denotes factor
T1554 60-67 JJ denotes nuclear
T1553 56-59 DT denotes the
T1552 53-55 IN denotes of
T1551 46-52 NN denotes member
T1550 35-45 JJ denotes primordial
T1549 30-34 RB denotes most
T1548 26-29 DT denotes the
T1547 21-25 IN denotes that
T1546 14-20 VB denotes showed
T1545 3-13 RB denotes previously
T1544 0-2 PRP denotes We
R1113 T1544 T1546 arg1Of We,showed
R1114 T1546 T1545 arg1Of showed,previously
R1115 T1550 T1549 arg1Of primordial,most
R1116 T1551 T1548 arg1Of member,the
R1117 T1551 T1550 arg1Of member,primordial
R1118 T1551 T1552 arg1Of member,of
R1119 T1551 T1573 arg1Of member,binds
R1120 T1561 T1560 arg2Of NFAT,(
R1121 T1562 T1560 arg3Of ),(
R1122 T1563 T1552 arg2Of family,of
R1123 T1563 T1553 arg1Of family,the
R1124 T1563 T1554 arg1Of family,nuclear
R1125 T1563 T1555 arg1Of family,factor
R1126 T1563 T1556 arg1Of family,of
R1127 T1563 T1557 arg2Of family,activated
R1128 T1563 T1558 arg1Of family,T
R1129 T1563 T1559 arg1Of family,cells
R1130 T1563 T1560 arg1Of family,(
R1131 T1563 T1564 arg1Of family,","
R1132 T1565 T1564 arg2Of NFAT5,","
R1133 T1565 T1566 arg1Of NFAT5,(
R1134 T1568 T1566 arg2Of known,(
R1135 T1568 T1567 arg1Of known,also
R1136 T1568 T1569 arg1Of known,as
R1137 T1570 T1569 arg2Of TonEBP,as
R1138 T1571 T1566 arg3Of ),(
R1139 T1573 T1546 arg2Of binds,showed
R1140 T1573 T1547 arg1Of binds,that
R1141 T1573 T1572 arg1Of binds,","
R1142 T1573 T1574 arg1Of binds,to
R1143 T1576 T1574 arg2Of site,to
R1144 T1576 T1575 arg1Of site,a
R1145 T1576 T1577 arg1Of site,within
R1146 T1576 T1581 arg1Of site,that
R1147 T1576 T1582 arg1Of site,is
R1148 T1576 T1584 arg2Of site,conserved
R1149 T1576 T1591 arg1Of site,is
R1150 T1576 T1593 arg2Of site,conserved
R1151 T1580 T1577 arg2Of LTR,within
R1152 T1580 T1578 arg1Of LTR,the
R1153 T1580 T1579 arg1Of LTR,HIV-1
R1154 T1584 T1582 arg2Of conserved,is
R1155 T1584 T1583 arg1Of conserved,highly
R1156 T1584 T1585 arg1Of conserved,across
R1157 T1584 T1590 arg1Of conserved,and
R1158 T1588 T1585 arg2Of subtypes,across
R1159 T1588 T1586 arg1Of subtypes,all
R1160 T1588 T1587 arg1Of subtypes,HIV-1
R1161 T1590 T1589 arg1Of and,","
R1162 T1593 T1590 arg2Of conserved,and
R1163 T1593 T1591 arg2Of conserved,is
R1164 T1593 T1592 arg1Of conserved,also
R1165 T1593 T1594 arg1Of conserved,in
R1166 T1595 T1596 arg1Of HIV-2,and
R1167 T1597 T1596 arg2Of SIV,and
R1168 T1598 T1594 arg2Of LTRs,in
R1169 T1598 T1595 arg1Of LTRs,HIV-2
R1170 T1598 T1597 arg1Of LTRs,SIV

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T989 132-138 Protein denotes TonEBP
T988 111-116 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1790 132-138 http://www.uniprot.org/uniprot/O94916 denotes TonEBP
T1783 111-116 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-CC

Id Subject Object Predicate Lexical cue
T1051 90-95 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T936 0-274 Sentence denotes We previously showed that the most primordial member of the nuclear factor of activated T cells (NFAT) family, NFAT5 (also known as TonEBP), binds to a site within the HIV-1 LTR that is highly conserved across all HIV-1 subtypes, and is also conserved in HIV-2 and SIV LTRs.
T28 0-274 Sentence denotes We previously showed that the most primordial member of the nuclear factor of activated T cells (NFAT) family, NFAT5 (also known as TonEBP), binds to a site within the HIV-1 LTR that is highly conserved across all HIV-1 subtypes, and is also conserved in HIV-2 and SIV LTRs.

simple1

Id Subject Object Predicate Lexical cue
T1083 132-138 Protein denotes TonEBP
T1082 111-116 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2689 141-146 Binding denotes binds
T2677 132-138 Protein denotes TonEBP
T2676 111-116 Protein denotes NFAT5
R2076 T2676 T2689 themeOf NFAT5,binds
R2077 T2677 T2689 themeOf TonEBP,binds

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1868 141-146 Binding denotes binds
T1856 132-138 Protein denotes TonEBP
T1855 111-116 Protein denotes NFAT5
R1383 T1855 T1868 themeOf NFAT5,binds
R1384 T1856 T1868 themeOf TonEBP,binds

DLUT931

Id Subject Object Predicate Lexical cue
T1817 141-146 Binding denotes binds
T1805 132-138 Protein denotes TonEBP
T1804 111-116 Protein denotes NFAT5
R1360 T1804 T1817 themeOf NFAT5,binds
R1361 T1805 T1817 themeOf TonEBP,binds

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2745 147-156 Entity denotes to a site
T2736 132-138 Protein denotes TonEBP
T2704 88-102 Entity denotes T cells (NFAT)
T2701 111-116 Protein denotes NFAT5

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2438 273-274 . denotes .
T2437 269-273 NNPS denotes LTRs
T2436 265-268 NNP denotes SIV
T2435 261-264 CC denotes and
T2434 255-260 NNP denotes HIV-2
T2433 252-254 IN denotes in
T2432 242-251 VBN denotes conserved
T2431 237-241 RB denotes also
T2430 234-236 VBZ denotes is
T2429 230-233 CC denotes and
T2428 228-229 , denotes ,
T2427 220-228 NNS denotes subtypes
T2426 214-219 JJ denotes HIV-1
T2425 210-213 DT denotes all
T2424 203-209 IN denotes across
T2423 193-202 VBN denotes conserved
T2422 186-192 RB denotes highly
T2421 183-185 VBZ denotes is
T2420 178-182 WDT denotes that
T2419 174-177 NNP denotes LTR
T2418 168-173 NNP denotes HIV-1
T2417 164-167 DT denotes the
T2416 157-163 IN denotes within
T2415 152-156 NN denotes site
T2414 150-151 DT denotes a
T2413 147-149 TO denotes to
T2412 141-146 VBZ denotes binds
T2411 139-140 , denotes ,
T2410 138-139 -RRB- denotes )
T2409 132-138 NNP denotes TonEBP
T2408 129-131 IN denotes as
T2407 123-128 VBN denotes known
T2406 118-122 RB denotes also
T2405 117-118 -LRB- denotes (
T2404 111-116 NNP denotes NFAT5
T2403 109-110 , denotes ,
T2402 103-109 NN denotes family
T2401 101-102 -RRB- denotes )
T2400 97-101 NNP denotes NFAT
T2399 96-97 -LRB- denotes (
T2398 90-95 NNS denotes cells
T2397 88-89 NNP denotes T
T2396 78-87 VBN denotes activated
T2395 75-77 IN denotes of
T2394 68-74 NN denotes factor
T2393 60-67 JJ denotes nuclear
T2392 56-59 DT denotes the
T2391 53-55 IN denotes of
T2390 46-52 NN denotes member
T2389 35-45 JJ denotes primordial
T2388 30-34 RBS denotes most
T2387 26-29 DT denotes the
T2386 21-25 IN denotes that
T2385 14-20 VBD denotes showed
T2384 3-13 RB denotes previously
T2383 0-2 PRP denotes We
R1835 T2383 T2385 nsubj We,showed
R1836 T2384 T2385 advmod previously,showed
R1837 T2385 T2385 ROOT showed,showed
R1839 T2386 T2412 mark that,binds
R1840 T2387 T2390 det the,member
R1841 T2388 T2389 advmod most,primordial
R1843 T2389 T2390 amod primordial,member
R1844 T2390 T2412 nsubj member,binds
R1845 T2391 T2390 prep of,member
R1847 T2392 T2394 det the,factor
R1848 T2393 T2394 amod nuclear,factor
R1849 T2394 T2391 pobj factor,of
R1851 T2395 T2394 prep of,factor
R1852 T2396 T2398 amod activated,cells
R1853 T2397 T2398 compound T,cells
R1855 T2398 T2395 pobj cells,of
R1856 T2399 T2400 punct (,NFAT
R1857 T2400 T2398 appos NFAT,cells
R1860 T2401 T2400 punct ),NFAT
R1862 T2402 T2398 conj family,cells
R1863 T2403 T2402 punct ",",family
R1864 T2404 T2390 appos NFAT5,member
R1865 T2405 T2407 punct (,known
R1867 T2406 T2407 advmod also,known
R1868 T2407 T2390 acl known,member
R1869 T2408 T2407 prep as,known
R1870 T2409 T2408 pobj TonEBP,as
R1871 T2410 T2390 punct ),member
R1873 T2411 T2412 punct ",",binds
R1874 T2412 T2385 ccomp binds,showed
R1875 T2413 T2412 prep to,binds
R1877 T2414 T2415 det a,site
R1878 T2415 T2413 pobj site,to
R1879 T2416 T2415 prep within,site
R1881 T2417 T2419 det the,LTR
R1883 T2418 T2419 compound HIV-1,LTR
R1884 T2419 T2416 pobj LTR,within
R1885 T2420 T2423 nsubjpass that,conserved
R1887 T2421 T2423 auxpass is,conserved
R1888 T2422 T2423 advmod highly,conserved
R1889 T2423 T2415 relcl conserved,site
R1890 T2424 T2423 prep across,conserved
R1892 T2425 T2427 det all,subtypes
R1893 T2426 T2427 compound HIV-1,subtypes
R1894 T2427 T2424 pobj subtypes,across
R1896 T2428 T2412 punct ",",binds
R1897 T2429 T2412 cc and,binds
R1898 T2430 T2432 auxpass is,conserved
R1901 T2431 T2432 advmod also,conserved
R1903 T2432 T2412 conj conserved,binds
R1904 T2433 T2432 prep in,conserved
R1905 T2434 T2433 pobj HIV-2,in
R1907 T2435 T2434 cc and,HIV-2
R1908 T2436 T2437 compound SIV,LTRs
R1909 T2437 T2434 conj LTRs,HIV-2
R1911 T2438 T2385 punct .,showed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1905 111-116 Protein denotes NFAT5
T1904 97-101 Protein denotes NFAT
T1909 141-146 Binding denotes binds
T1908 60-95 Protein denotes nuclear factor of activated T cells
T1907 168-177 Protein denotes HIV-1 LTR
T1906 132-138 Protein denotes TonEBP
R1406 T1907 T1909 themeOf HIV-1 LTR,binds
R1408 T1908 T1909 themeOf nuclear factor of activated T cells,binds

testone

Id Subject Object Predicate Lexical cue
T877 141-146 Binding denotes binds
T864 132-138 Protein denotes TonEBP
T863 111-116 Protein denotes NFAT5
R614 T863 T877 themeOf NFAT5,binds
R615 T864 T877 themeOf TonEBP,binds

test3

Id Subject Object Predicate Lexical cue
T913 141-146 Binding denotes binds
T912 132-138 Protein denotes TonEBP
T911 111-116 Protein denotes NFAT5
T890 132-138 Protein denotes TonEBP
T889 111-116 Protein denotes NFAT5
R623 T911 T913 themeOf NFAT5,binds
R624 T912 T913 themeOf TonEBP,binds