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PMC:3320587 / 46141-47262 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-11344309-98010805 111-113 11344309 denotes 57
22496647-11780147-98010806 258-260 11780147 denotes 58
22496647-11485737-98010807 393-395 11485737 denotes 59
22496647-10377394-98010808 399-401 10377394 denotes 60
22496647-12975316-98010809 417-419 12975316 denotes 61
22496647-15109564-98010810 422-424 15109564 denotes 63
22496647-11485737-98010811 541-543 11485737 denotes 59
22496647-10051678-98010812 547-549 10051678 denotes 64
22496647-12080349-98010813 553-555 12080349 denotes 65

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17772 1095-1120 NN denotes transcription/replication
T17771 1089-1094 JJ denotes viral
T17770 1080-1088 VB denotes enhanced
T17769 1076-1079 IN denotes for
T17768 1074-1075 -COMMA- denotes ,
T17767 1072-1074 NN denotes TB
T17766 1069-1071 TO denotes to
T17765 1060-1068 NN denotes response
T17764 1053-1059 JJ denotes immune
T17763 1046-1052 JJ denotes innate
T17762 1042-1045 DT denotes the
T17761 1039-1041 IN denotes of
T17760 1034-1038 NN denotes part
T17759 1031-1033 IN denotes as
T17758 1023-1030 VB denotes induced
T17757 1020-1022 VB denotes is
T17756 1014-1019 WDT denotes which
T17755 1012-1013 -COMMA- denotes ,
T17754 1007-1012 NN denotes NFAT5
T17753 998-1006 VB denotes co-opted
T17752 994-997 VB denotes has
T17751 988-993 NN denotes HIV-1
T17750 986-987 -COMMA- denotes ,
T17749 982-986 RB denotes Thus
T17748 972-980 NN denotes promoter
T17747 966-971 JJ denotes viral
T17746 962-965 DT denotes the
T17745 958-961 CC denotes and
T17744 952-957 NN denotes NFAT5
T17743 944-951 IN denotes between
T17742 932-943 NN denotes interaction
T17741 925-931 JJ denotes direct
T17740 923-924 DT denotes a
T17739 919-922 IN denotes via
T17738 917-918 NN denotes C
T17737 913-916 CC denotes and
T17736 911-912 NN denotes B
T17735 902-910 NN denotes subtypes
T17734 896-901 NN denotes HIV-1
T17733 893-895 IN denotes of
T17732 881-892 NN denotes replication
T17731 877-880 DT denotes the
T17730 868-876 VB denotes enhances
T17729 864-867 NN denotes MTb
T17728 859-863 IN denotes that
T17727 851-858 VB denotes showing
T17726 848-850 IN denotes by
T17725 837-847 NN denotes expression
T17724 832-836 NN denotes gene
T17723 826-831 NN denotes HIV-1
T17722 811-825 JJ denotes MTb-stimulated
T17721 808-810 TO denotes to
T17720 796-807 NN denotes observation
T17719 791-795 DT denotes this
T17718 784-790 VB denotes linked
T17717 779-783 VB denotes have
T17716 776-778 PRP denotes We
T17715 766-774 NN denotes stimulus
T17714 755-765 JJ denotes additional
T17713 752-754 DT denotes an
T17712 749-751 IN denotes as
T17711 745-748 NN denotes MTb
T17710 737-744 VB denotes include
T17709 734-736 TO denotes to
T17708 729-733 NN denotes list
T17707 724-728 DT denotes this
T17706 715-723 VB denotes expanded
T17705 710-714 VB denotes have
T17704 707-709 PRP denotes we
T17703 705-706 -COMMA- denotes ,
T17702 695-705 NN denotes expression
T17701 690-694 NN denotes gene
T17700 684-689 NN denotes NFAT5
T17699 681-683 IN denotes of
T17698 668-680 NN denotes upregulation
T17697 652-667 JJ denotes MyD88-dependent
T17696 644-651 VB denotes induces
T17695 634-643 NN denotes infection
T17694 630-633 NN denotes MTb
T17693 627-629 TO denotes to
T17692 618-626 NN denotes response
T17691 611-617 JJ denotes immune
T17690 604-610 JJ denotes innate
T17689 599-603 NN denotes host
T17688 595-598 DT denotes the
T17687 590-594 IN denotes that
T17686 585-589 RB denotes here
T17685 571-584 NN denotes demonstration
T17684 567-570 PRP-DOLLAR- denotes our
T17683 564-566 IN denotes on
T17682 558-563 VB denotes Based
T17681 555-556 -RRB- denotes ]
T17680 553-555 CD denotes 65
T17679 552-553 -LRB- denotes [
T17678 550-551 -COMMA- denotes ,
T17677 549-550 -RRB- denotes ]
T17676 547-549 CD denotes 64
T17675 546-547 -LRB- denotes [
T17674 544-545 -COMMA- denotes ,
T17673 543-544 -RRB- denotes ]
T17672 541-543 CD denotes 59
T17671 540-541 -LRB- denotes [
T17670 531-539 NN denotes activity
T17669 525-530 NN denotes NFAT5
T17668 516-524 VB denotes regulate
T17667 513-515 TO denotes to
T17666 507-512 VB denotes shown
T17665 502-506 VB denotes been
T17664 497-501 VB denotes have
T17663 480-496 NN denotes cell-stimulation
T17662 478-479 NN denotes T
T17661 474-477 CC denotes and
T17660 472-473 -COMMA- denotes ,
T17659 462-472 NN denotes activation
T17658 453-461 NN denotes integrin
T17657 451-452 -COMMA- denotes ,
T17656 445-451 NN denotes stress
T17655 437-444 JJ denotes osmotic
T17654 435-436 -COMMA- denotes ,
T17653 431-435 NN denotes date
T17652 428-430 TO denotes To
T17651 425-426 -RRB- denotes )
T17650 424-425 -RRB- denotes ]
T17649 422-424 CD denotes 63
T17648 421-422 -LRB- denotes [
T17642 404-412 VB denotes reviewed
T17641 402-403 -COMMA- denotes ,
T17640 401-402 -RRB- denotes ]
T17639 399-401 CD denotes 60
T17638 398-399 -LRB- denotes [
T17637 396-397 -COMMA- denotes ,
T17636 395-396 -RRB- denotes ]
T17635 393-395 CD denotes 59
T17634 392-393 -LRB- denotes [
T17633 391-392 -LRB- denotes (
T17632 380-390 NN denotes activation
T17631 375-379 NN denotes gene
T17630 372-374 IN denotes in
T17629 368-371 NN denotes Jun
T17628 364-367 CC denotes and
T17627 360-363 NN denotes Fos
T17626 351-359 NN denotes proteins
T17625 344-350 NN denotes zipper
T17624 329-343 NN denotes region-leucine
T17623 323-328 JJ denotes basic
T17622 319-322 DT denotes the
T17621 314-318 IN denotes with
T17620 304-313 VB denotes cooperate
T17619 300-303 RB denotes not
T17618 295-299 VB denotes does
T17617 291-294 CC denotes and
T17616 289-290 -COMMA- denotes ,
T17615 278-289 JJ denotes independent
T17614 266-277 NN denotes calcineurin
T17613 263-265 VB denotes is
T17612 261-262 -COMMA- denotes ,
T17611 260-261 -RRB- denotes ]
T17610 258-260 CD denotes 58
T17609 257-258 -LRB- denotes [
T17608 248-256 NN denotes proteins
T17607 242-247 NN denotes NF-κB
T17606 231-241 VB denotes resembling
T17605 223-230 NN denotes fashion
T17604 221-222 DT denotes a
T17603 218-220 IN denotes in
T17602 212-217 NN denotes dimer
T17601 203-211 JJ denotes obligate
T17600 200-202 DT denotes an
T17599 197-199 IN denotes as
T17598 193-196 NN denotes DNA
T17597 187-192 VB denotes binds
T17596 181-186 NN denotes NFAT5
T17595 179-180 -COMMA- denotes ,
T17594 178-179 -RRB- denotes )
T17593 173-178 NN denotes NFAT4
T17592 169-172 CC denotes and
T17591 167-168 -COMMA- denotes ,
T17590 162-167 NN denotes NFAT3
T17589 160-161 -COMMA- denotes ,
T17588 155-160 NN denotes NFATc
T17587 153-154 -COMMA- denotes ,
T17586 148-153 NN denotes NFATp
T17585 147-148 -LRB- denotes (
T17584 138-146 NN denotes proteins
T17583 133-137 NN denotes NFAT
T17582 127-132 JJ denotes other
T17581 123-126 DT denotes the
T17580 116-122 IN denotes Unlike
T17579 113-114 -RRB- denotes ]
T17578 111-113 CD denotes 57
T17577 110-111 -LRB- denotes [
T17576 101-109 NN denotes proteins
T17575 96-100 NN denotes NFAT
T17574 93-95 IN denotes of
T17573 86-92 NN denotes family
T17572 82-85 NN denotes Rel
T17571 78-81 DT denotes the
T17570 75-77 IN denotes of
T17569 68-74 NN denotes member
T17568 58-67 JJ denotes divergent
T17567 43-57 RB denotes evolutionarily
T17566 38-42 RB denotes most
T17565 34-37 DT denotes the
T17564 31-33 VB denotes is
T17563 25-30 NN denotes NFAT5
T17562 18-24 NN denotes factor
T17561 4-17 NN denotes transcription
T17560 0-3 DT denotes The
T17647 420-421 CD denotes –
T17646 419-420 -RRB- denotes ]
T17645 417-419 CD denotes 61
T17644 416-417 -LRB- denotes [
T17643 413-415 IN denotes in
R12553 T17563 T17560 arg1Of NFAT5,The
R12554 T17563 T17561 arg1Of NFAT5,transcription
R12555 T17563 T17562 arg1Of NFAT5,factor
R12556 T17563 T17564 arg1Of NFAT5,is
R12557 T17568 T17566 arg1Of divergent,most
R12558 T17568 T17567 arg1Of divergent,evolutionarily
R12559 T17569 T17564 arg2Of member,is
R12560 T17569 T17565 arg1Of member,the
R12561 T17569 T17568 arg1Of member,divergent
R12562 T17569 T17570 arg1Of member,of
R12563 T17573 T17570 arg2Of family,of
R12564 T17573 T17571 arg1Of family,the
R12565 T17573 T17572 arg1Of family,Rel
R12566 T17573 T17574 arg1Of family,of
R12567 T17573 T17577 arg1Of family,[
R12568 T17576 T17574 arg2Of proteins,of
R12569 T17576 T17575 arg1Of proteins,NFAT
R12570 T17578 T17577 arg2Of 57,[
R12571 T17579 T17577 arg3Of ],[
R12572 T17584 T17580 arg2Of proteins,Unlike
R12573 T17584 T17581 arg1Of proteins,the
R12574 T17584 T17582 arg1Of proteins,other
R12575 T17584 T17583 arg1Of proteins,NFAT
R12576 T17584 T17585 arg1Of proteins,(
R12577 T17586 T17587 arg1Of NFATp,","
R12578 T17587 T17589 arg1Of ",",","
R12579 T17588 T17587 arg2Of NFATc,","
R12580 T17589 T17592 arg1Of ",",and
R12581 T17590 T17589 arg2Of NFAT3,","
R12582 T17592 T17585 arg2Of and,(
R12583 T17592 T17591 arg1Of and,","
R12584 T17593 T17592 arg2Of NFAT4,and
R12585 T17594 T17585 arg3Of ),(
R12586 T17596 T17597 arg1Of NFAT5,binds
R12587 T17596 T17613 arg1Of NFAT5,is
R12588 T17596 T17615 arg1Of NFAT5,independent
R12589 T17596 T17618 arg1Of NFAT5,does
R12590 T17596 T17620 arg1Of NFAT5,cooperate
R12591 T17597 T17599 arg1Of binds,as
R12592 T17597 T17603 arg1Of binds,in
R12593 T17597 T17612 arg1Of binds,","
R12594 T17598 T17597 arg2Of DNA,binds
R12595 T17602 T17599 arg2Of dimer,as
R12596 T17602 T17600 arg1Of dimer,an
R12597 T17602 T17601 arg1Of dimer,obligate
R12598 T17605 T17603 arg2Of fashion,in
R12599 T17605 T17604 arg1Of fashion,a
R12600 T17605 T17606 arg1Of fashion,resembling
R12601 T17608 T17606 arg2Of proteins,resembling
R12602 T17608 T17607 arg1Of proteins,NF-κB
R12603 T17608 T17609 arg1Of proteins,[
R12604 T17610 T17609 arg2Of 58,[
R12605 T17611 T17609 arg3Of ],[
R12606 T17612 T17617 arg1Of ",",and
R12607 T17613 T17612 arg2Of is,","
R12608 T17615 T17613 arg2Of independent,is
R12609 T17615 T17614 arg1Of independent,calcineurin
R12610 T17617 T17580 arg1Of and,Unlike
R12611 T17617 T17595 arg1Of and,","
R12612 T17617 T17616 arg1Of and,","
R12613 T17617 T17651 arg1Of and,)
R12614 T17620 T17617 arg2Of cooperate,and
R12615 T17620 T17618 arg2Of cooperate,does
R12616 T17620 T17619 arg1Of cooperate,not
R12617 T17620 T17621 arg1Of cooperate,with
R12618 T17620 T17648 arg1Of cooperate,[
R12619 T17626 T17622 arg1Of proteins,the
R12620 T17626 T17623 arg1Of proteins,basic
R12621 T17626 T17624 arg1Of proteins,region-leucine
R12622 T17626 T17625 arg1Of proteins,zipper
R12623 T17627 T17628 arg1Of Fos,and
R12624 T17628 T17621 arg2Of and,with
R12625 T17628 T17626 arg1Of and,proteins
R12626 T17628 T17630 arg1Of and,in
R12627 T17628 T17637 arg1Of and,","
R12628 T17628 T17638 arg1Of and,[
R12629 T17628 T17641 arg1Of and,","
R12630 T17628 T17642 arg2Of and,reviewed
R12631 T17629 T17628 arg2Of Jun,and
R12632 T17632 T17630 arg2Of activation,in
R12633 T17632 T17631 arg1Of activation,gene
R12634 T17632 T17633 arg1Of activation,(
R12635 T17635 T17633 arg2Of 59,(
R12636 T17635 T17634 arg1Of 59,[
R12637 T17636 T17633 arg3Of ],(
R12638 T17639 T17638 arg2Of 60,[
R12639 T17640 T17638 arg3Of ],[
R12640 T17642 T17643 arg1Of reviewed,in
R12641 T17645 T17644 arg2Of 61,[
R12642 T17646 T17644 arg3Of ],[
R12643 T17647 T17643 arg2Of –,in
R12644 T17647 T17644 arg1Of –,[
R12645 T17649 T17648 arg2Of 63,[
R12646 T17650 T17648 arg3Of ],[
R12647 T17653 T17652 arg2Of date,To
R12648 T17656 T17655 arg1Of stress,osmotic
R12649 T17656 T17657 arg1Of stress,","
R12650 T17657 T17661 arg1Of ",",and
R12651 T17659 T17657 arg2Of activation,","
R12652 T17659 T17658 arg1Of activation,integrin
R12653 T17661 T17660 arg1Of and,","
R12654 T17661 T17664 arg1Of and,have
R12655 T17661 T17665 arg1Of and,been
R12656 T17661 T17666 arg2Of and,shown
R12657 T17661 T17668 arg1Of and,regulate
R12658 T17663 T17661 arg2Of cell-stimulation,and
R12659 T17663 T17662 arg1Of cell-stimulation,T
R12660 T17666 T17652 arg1Of shown,To
R12661 T17666 T17654 arg1Of shown,","
R12662 T17666 T17664 arg2Of shown,have
R12663 T17666 T17665 arg2Of shown,been
R12664 T17666 T17674 arg1Of shown,","
R12665 T17666 T17675 arg1Of shown,[
R12666 T17666 T17678 arg1Of shown,","
R12667 T17666 T17679 arg1Of shown,[
R12668 T17668 T17666 arg3Of regulate,shown
R12669 T17668 T17667 arg1Of regulate,to
R12670 T17670 T17668 arg2Of activity,regulate
R12671 T17670 T17669 arg1Of activity,NFAT5
R12672 T17670 T17671 arg1Of activity,[
R12673 T17672 T17671 arg2Of 59,[
R12674 T17673 T17671 arg3Of ],[
R12675 T17676 T17675 arg2Of 64,[
R12676 T17677 T17675 arg3Of ],[
R12677 T17680 T17679 arg2Of 65,[
R12678 T17681 T17679 arg3Of ],[
R12679 T17683 T17682 arg2Of on,Based
R12680 T17685 T17683 arg2Of demonstration,on
R12681 T17685 T17684 arg1Of demonstration,our
R12682 T17685 T17686 arg1Of demonstration,here
R12683 T17692 T17688 arg1Of response,the
R12684 T17692 T17689 arg1Of response,host
R12685 T17692 T17690 arg1Of response,innate
R12686 T17692 T17691 arg1Of response,immune
R12687 T17692 T17693 arg1Of response,to
R12688 T17692 T17696 arg1Of response,induces
R12689 T17695 T17693 arg2Of infection,to
R12690 T17695 T17694 arg1Of infection,MTb
R12691 T17696 T17685 arg2Of induces,demonstration
R12692 T17696 T17687 arg1Of induces,that
R12693 T17698 T17696 arg2Of upregulation,induces
R12694 T17698 T17697 arg1Of upregulation,MyD88-dependent
R12695 T17698 T17699 arg1Of upregulation,of
R12696 T17702 T17699 arg2Of expression,of
R12697 T17702 T17700 arg1Of expression,NFAT5
R12698 T17702 T17701 arg1Of expression,gene
R12699 T17704 T17705 arg1Of we,have
R12700 T17704 T17706 arg1Of we,expanded
R12701 T17706 T17682 arg1Of expanded,Based
R12702 T17706 T17703 arg1Of expanded,","
R12703 T17706 T17705 arg2Of expanded,have
R12704 T17708 T17706 arg2Of list,expanded
R12705 T17708 T17707 arg1Of list,this
R12706 T17708 T17709 modOf list,to
R12707 T17710 T17709 arg1Of include,to
R12708 T17710 T17712 arg1Of include,as
R12709 T17711 T17710 arg2Of MTb,include
R12710 T17715 T17712 arg2Of stimulus,as
R12711 T17715 T17713 arg1Of stimulus,an
R12712 T17715 T17714 arg1Of stimulus,additional
R12713 T17716 T17717 arg1Of We,have
R12714 T17716 T17718 arg1Of We,linked
R12715 T17716 T17727 arg1Of We,showing
R12716 T17718 T17717 arg2Of linked,have
R12717 T17718 T17721 arg1Of linked,to
R12718 T17718 T17726 arg1Of linked,by
R12719 T17720 T17718 arg2Of observation,linked
R12720 T17720 T17719 arg1Of observation,this
R12721 T17725 T17721 arg2Of expression,to
R12722 T17725 T17722 arg1Of expression,MTb-stimulated
R12723 T17725 T17723 arg1Of expression,HIV-1
R12724 T17725 T17724 arg1Of expression,gene
R12725 T17727 T17726 arg2Of showing,by
R12726 T17729 T17730 arg1Of MTb,enhances
R12727 T17730 T17727 arg2Of enhances,showing
R12728 T17730 T17728 arg1Of enhances,that
R12729 T17730 T17739 arg1Of enhances,via
R12730 T17732 T17730 arg2Of replication,enhances
R12731 T17732 T17731 arg1Of replication,the
R12732 T17732 T17733 arg1Of replication,of
R12733 T17736 T17737 arg1Of B,and
R12734 T17737 T17733 arg2Of and,of
R12735 T17737 T17734 arg1Of and,HIV-1
R12736 T17737 T17735 arg1Of and,subtypes
R12737 T17738 T17737 arg2Of C,and
R12738 T17742 T17740 arg1Of interaction,a
R12739 T17742 T17741 arg1Of interaction,direct
R12740 T17742 T17743 arg1Of interaction,between
R12741 T17742 T17745 arg1Of interaction,and
R12742 T17744 T17743 arg2Of NFAT5,between
R12743 T17745 T17739 arg2Of and,via
R12744 T17748 T17745 arg2Of promoter,and
R12745 T17748 T17746 arg1Of promoter,the
R12746 T17748 T17747 arg1Of promoter,viral
R12747 T17751 T17752 arg1Of HIV-1,has
R12748 T17751 T17753 arg1Of HIV-1,co-opted
R12749 T17753 T17749 arg1Of co-opted,Thus
R12750 T17753 T17750 arg1Of co-opted,","
R12751 T17753 T17752 arg2Of co-opted,has
R12752 T17754 T17753 arg2Of NFAT5,co-opted
R12753 T17754 T17755 arg1Of NFAT5,","
R12754 T17754 T17756 arg1Of NFAT5,which
R12755 T17754 T17757 arg1Of NFAT5,is
R12756 T17754 T17758 arg2Of NFAT5,induced
R12757 T17758 T17757 arg2Of induced,is
R12758 T17758 T17759 arg1Of induced,as
R12759 T17758 T17768 arg1Of induced,","
R12760 T17758 T17769 arg1Of induced,for
R12761 T17760 T17759 arg2Of part,as
R12762 T17760 T17761 arg1Of part,of
R12763 T17760 T17766 arg1Of part,to
R12764 T17765 T17761 arg2Of response,of
R12765 T17765 T17762 arg1Of response,the
R12766 T17765 T17763 arg1Of response,innate
R12767 T17765 T17764 arg1Of response,immune
R12768 T17767 T17766 arg2Of TB,to
R12769 T17772 T17769 arg2Of transcription/replication,for
R12770 T17772 T17770 arg2Of transcription/replication,enhanced
R12771 T17772 T17771 arg1Of transcription/replication,viral

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T17327 1007-1012 Antecedent denotes NFAT5
T17326 1014-1019 Anaphor denotes which
R12550 T17326 T17327 boundBy which,NFAT5

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17341 1007-1012 Protein denotes NFAT5
T17340 952-957 Protein denotes NFAT5
T17339 684-689 Protein denotes NFAT5
T17338 652-657 Protein denotes MyD88
T17337 525-530 Protein denotes NFAT5
T17336 368-371 Protein denotes Jun
T17335 360-363 Protein denotes Fos
T17334 266-277 Protein denotes calcineurin
T17333 181-186 Protein denotes NFAT5
T17332 173-178 Protein denotes NFAT4
T17331 162-167 Protein denotes NFAT3
T17330 155-160 Protein denotes NFATc
T17329 148-153 Protein denotes NFATp
T17328 25-30 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18848 652-657 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T18824 1007-1012 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18823 952-957 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18822 684-689 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18821 525-530 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18820 181-186 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T18819 25-30 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T17417 1089-1108 http://purl.obolibrary.org/obo/GO_0019083 denotes viral transcription
T17412 832-847 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T17411 690-705 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T17409 1053-1068 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T17408 611-626 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T17406 1046-1068 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T17405 604-626 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T17403 1046-1068 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response
T17402 604-626 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response
T17400 1046-1068 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T17399 604-626 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T17397 1046-1068 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T17396 604-626 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T17394 1046-1068 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T17393 604-626 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T17391 1046-1068 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T17390 604-626 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T17389 1046-1059 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune
T17388 604-617 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune
T17387 453-472 http://purl.obolibrary.org/obo/GO_0033622 denotes integrin activation
T17386 266-277 http://purl.obolibrary.org/obo/GO_0004723 denotes calcineurin
T17385 266-277 http://purl.obolibrary.org/obo/GO_0004722 denotes calcineurin
T17376 1095-1108 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T17375 4-17 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T17434 266-277 http://purl.obolibrary.org/obo/GO_0004723 denotes calcineurin
T17433 266-277 http://purl.obolibrary.org/obo/GO_0004722 denotes calcineurin

GO-CC

Id Subject Object Predicate Lexical cue
T17460 599-603 http://purl.obolibrary.org/obo/GO_0018995 denotes host
T17456 480-484 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T17211 982-1121 Sentence denotes Thus, HIV-1 has co-opted NFAT5, which is induced as part of the innate immune response to TB, for enhanced viral transcription/replication.
T17210 776-981 Sentence denotes We have linked this observation to MTb-stimulated HIV-1 gene expression by showing that MTb enhances the replication of HIV-1 subtypes B and C via a direct interaction between NFAT5 and the viral promoter.
T17209 558-775 Sentence denotes Based on our demonstration here that the host innate immune response to MTb infection induces MyD88-dependent upregulation of NFAT5 gene expression, we have expanded this list to include MTb as an additional stimulus.
T17208 428-557 Sentence denotes To date, osmotic stress, integrin activation, and T cell-stimulation have been shown to regulate NFAT5 activity [59], [64], [65].
T17207 116-427 Sentence denotes Unlike the other NFAT proteins (NFATp, NFATc, NFAT3, and NFAT4), NFAT5 binds DNA as an obligate dimer in a fashion resembling NF-κB proteins [58], is calcineurin independent, and does not cooperate with the basic region-leucine zipper proteins Fos and Jun in gene activation ([59], [60], reviewed in [61]–[63]).
T17206 0-115 Sentence denotes The transcription factor NFAT5 is the most evolutionarily divergent member of the Rel family of NFAT proteins [57].
T273 0-115 Sentence denotes The transcription factor NFAT5 is the most evolutionarily divergent member of the Rel family of NFAT proteins [57].
T274 116-427 Sentence denotes Unlike the other NFAT proteins (NFATp, NFATc, NFAT3, and NFAT4), NFAT5 binds DNA as an obligate dimer in a fashion resembling NF-κB proteins [58], is calcineurin independent, and does not cooperate with the basic region-leucine zipper proteins Fos and Jun in gene activation ([59], [60], reviewed in [61]–[63]).
T275 428-557 Sentence denotes To date, osmotic stress, integrin activation, and T cell-stimulation have been shown to regulate NFAT5 activity [59], [64], [65].
T276 558-775 Sentence denotes Based on our demonstration here that the host innate immune response to MTb infection induces MyD88-dependent upregulation of NFAT5 gene expression, we have expanded this list to include MTb as an additional stimulus.
T277 776-981 Sentence denotes We have linked this observation to MTb-stimulated HIV-1 gene expression by showing that MTb enhances the replication of HIV-1 subtypes B and C via a direct interaction between NFAT5 and the viral promoter.
T278 982-1121 Sentence denotes Thus, HIV-1 has co-opted NFAT5, which is induced as part of the innate immune response to TB, for enhanced viral transcription/replication.

simple1

Id Subject Object Predicate Lexical cue
T17479 1007-1012 Protein denotes NFAT5
T17478 952-957 Protein denotes NFAT5
T17477 684-689 Protein denotes NFAT5
T17476 652-657 Protein denotes MyD88
T17475 525-530 Protein denotes NFAT5
T17474 368-371 Protein denotes Jun
T17473 360-363 Protein denotes Fos
T17472 266-277 Protein denotes calcineurin
T17471 181-186 Protein denotes NFAT5
T17470 173-178 Protein denotes NFAT4
T17469 162-167 Protein denotes NFAT3
T17468 155-160 Protein denotes NFATc
T17467 148-153 Protein denotes NFATp
T17466 25-30 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20728 1023-1030 Positive_regulation denotes induced
T20727 998-1006 Positive_regulation denotes co-opted
T20726 932-943 Binding denotes interaction
T20725 668-680 Positive_regulation denotes upregulation
T20724 695-705 Gene_expression denotes expression
T20723 516-524 Regulation denotes regulate
T20722 187-192 Binding denotes binds
T20688 1007-1012 Protein denotes NFAT5
T20687 952-957 Protein denotes NFAT5
T20686 684-689 Protein denotes NFAT5
T20685 652-657 Protein denotes MyD88
T20684 525-530 Protein denotes NFAT5
T20683 368-371 Protein denotes Jun
T20682 360-363 Protein denotes Fos
T20681 266-277 Protein denotes calcineurin
T20680 181-186 Protein denotes NFAT5
T20679 173-178 Protein denotes NFAT4
T20678 162-167 Protein denotes NFAT3
T20677 155-160 Protein denotes NFATc
T20676 148-153 Protein denotes NFATp
T20675 25-30 Protein denotes NFAT5
R15371 T20680 T20722 themeOf NFAT5,binds
R15375 T20684 T20723 themeOf NFAT5,regulate
R15377 T20686 T20724 themeOf NFAT5,expression
R15378 T20687 T20726 themeOf NFAT5,interaction
R15379 T20688 T20727 themeOf NFAT5,co-opted
R15380 T20688 T20728 themeOf NFAT5,induced
R15413 T20724 T20725 themeOf expression,upregulation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19020 1007-1012 Protein denotes NFAT5
T19019 952-957 Protein denotes NFAT5
T19018 684-689 Protein denotes NFAT5
T19017 652-657 Protein denotes MyD88
T19016 525-530 Protein denotes NFAT5
T19015 368-371 Protein denotes Jun
T19014 360-363 Protein denotes Fos
T19013 266-277 Protein denotes calcineurin
T19012 181-186 Protein denotes NFAT5
T19011 173-178 Protein denotes NFAT4
T19010 162-167 Protein denotes NFAT3
T19009 155-160 Protein denotes NFATc
T19008 148-153 Protein denotes NFATp
T19007 25-30 Protein denotes NFAT5
T19060 998-1006 Positive_regulation denotes co-opted
T19059 1023-1030 Positive_regulation denotes induced
T19058 932-943 Binding denotes interaction
T19057 668-680 Positive_regulation denotes upregulation
T19056 695-705 Gene_expression denotes expression
T19055 187-192 Binding denotes binds
T19054 278-289 Regulation denotes independent
R13901 T19009 T19055 themeOf NFATc,binds
R13902 T19013 T19054 themeOf calcineurin,independent
R13903 T19018 T19056 themeOf NFAT5,expression
R13904 T19019 T19058 themeOf NFAT5,interaction
R13905 T19020 T19060 themeOf NFAT5,co-opted
R13906 T19020 T19059 themeOf NFAT5,induced
R13928 T19056 T19057 themeOf expression,upregulation

DLUT931

Id Subject Object Predicate Lexical cue
T18981 1023-1030 Positive_regulation denotes induced
T18980 998-1006 Positive_regulation denotes co-opted
T18979 932-943 Binding denotes interaction
T18978 658-667 Positive_regulation denotes dependent
T18977 668-680 Positive_regulation denotes upregulation
T18976 695-705 Gene_expression denotes expression
T18975 516-524 Regulation denotes regulate
T18974 187-192 Binding denotes binds
T18940 1007-1012 Protein denotes NFAT5
T18939 952-957 Protein denotes NFAT5
T18938 684-689 Protein denotes NFAT5
T18937 652-657 Protein denotes MyD88
T18936 525-530 Protein denotes NFAT5
T18935 368-371 Protein denotes Jun
T18934 360-363 Protein denotes Fos
T18933 266-277 Protein denotes calcineurin
T18932 181-186 Protein denotes NFAT5
T18931 173-178 Protein denotes NFAT4
T18930 162-167 Protein denotes NFAT3
T18929 155-160 Protein denotes NFATc
T18928 148-153 Protein denotes NFATp
T18927 25-30 Protein denotes NFAT5
R13889 T18976 T18977 themeOf expression,upregulation
R13890 T18977 T18978 themeOf upregulation,dependent
R13860 T18930 T18974 themeOf NFAT3,binds
R13861 T18932 T18974 themeOf NFAT5,binds
R13862 T18936 T18975 themeOf NFAT5,regulate
R13863 T18937 T18978 causeOf MyD88,dependent
R13864 T18938 T18976 themeOf NFAT5,expression
R13865 T18939 T18979 themeOf NFAT5,interaction
R13866 T18940 T18980 themeOf NFAT5,co-opted
R13867 T18940 T18981 themeOf NFAT5,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20948 681-705 Gene_expression denotes of NFAT5 gene expression
T20942 923-957 Binding denotes a direct interaction between NFAT5
T20936 811-847 Positive_regulation denotes MTb-stimulated HIV-1 gene expression
T20933 982-1013 Regulation denotes Thus, HIV-1 has co-opted NFAT5,
T20929 630-643 Regulation denotes MTb infection
T20903 162-167 Protein denotes NFAT3
T20896 155-160 Protein denotes NFATc
T20889 972-980 Entity denotes promoter
T20880 173-178 Protein denotes NFAT4
T20878 864-867 Protein denotes MTb
T20877 375-379 Protein denotes gene
T20875 652-667 Protein denotes MyD88-dependent
T20874 82-85 Protein denotes Rel
T20873 360-363 Protein denotes Fos
T20870 811-825 Protein denotes MTb-stimulated
T20869 123-180 Protein denotes the other NFAT proteins (NFATp, NFATc, NFAT3, and NFAT4),
T20849 314-371 Protein denotes with the basic region-leucine zipper proteins Fos and Jun
T20844 1007-1013 Protein denotes NFAT5,
T20837 96-109 Protein denotes NFAT proteins
T20825 181-186 Protein denotes NFAT5
T20820 200-290 Entity denotes an obligate dimer in a fashion resembling NF-κB proteins [58], is calcineurin independent,
T20813 0-30 Protein denotes The transcription factor NFAT5
T20812 4-24 Protein denotes transcription factor
T20804 944-957 Protein denotes between NFAT5
T20801 630-633 Protein denotes MTb
T20797 525-530 Protein denotes NFAT5
T20784 266-277 Protein denotes calcineurin
T20781 745-748 Protein denotes MTb
T20780 148-179 Protein denotes NFATp, NFATc, NFAT3, and NFAT4)
T20771 242-247 Protein denotes NF-κB
T20770 193-196 Entity denotes DNA
T20766 478-496 Entity denotes T cell-stimulation
T20763 242-261 Protein denotes NF-κB proteins [58]
T20755 684-689 Protein denotes NFAT5
T20926 652-706 Positive_regulation denotes MyD88-dependent upregulation of NFAT5 gene expression,
T20919 652-706 Regulation denotes MyD88-dependent upregulation of NFAT5 gene expression,
T20918 375-390 Positive_regulation denotes gene activation
T20909 181-290 Binding denotes NFAT5 binds DNA as an obligate dimer in a fashion resembling NF-κB proteins [58], is calcineurin independent,
T20907 453-545 Regulation denotes integrin activation, and T cell-stimulation have been shown to regulate NFAT5 activity [59],
R15368 T20755 T20948 themeOf NFAT5,of NFAT5 gene expression
R15381 T20770 T20909 themeOf DNA,"NFAT5 binds DNA as an obligate dimer in a fashion resembling NF-κB proteins [58], is calcineurin independent,"
R15420 T20801 T20929 themeOf MTb,MTb infection
R15421 T20804 T20942 themeOf between NFAT5,a direct interaction between NFAT5
R15424 T20825 T20909 themeOf NFAT5,"NFAT5 binds DNA as an obligate dimer in a fashion resembling NF-κB proteins [58], is calcineurin independent,"
R15430 T20844 T20933 themeOf "NFAT5,","Thus, HIV-1 has co-opted NFAT5,"
R15440 T20948 T20926 themeOf of NFAT5 gene expression,"MyD88-dependent upregulation of NFAT5 gene expression,"
R15443 T20870 T20936 causeOf MTb-stimulated,MTb-stimulated HIV-1 gene expression
R15444 T20875 T20919 causeOf MyD88-dependent,"MyD88-dependent upregulation of NFAT5 gene expression,"
R15445 T20877 T20918 themeOf gene,gene activation
R15454 T20926 T20919 themeOf "MyD88-dependent upregulation of NFAT5 gene expression,","MyD88-dependent upregulation of NFAT5 gene expression,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19479 451-452 , denotes ,
T19478 445-451 NN denotes stress
T19477 437-444 JJ denotes osmotic
T19476 435-436 , denotes ,
T19475 431-435 NN denotes date
T19474 428-430 TO denotes To
T19473 426-427 . denotes .
T19472 425-426 -RRB- denotes )
T19471 424-425 NNP denotes ]
T19520 652-667 JJ denotes MyD88-dependent
T19519 644-651 VBZ denotes induces
T19518 634-643 NN denotes infection
T19517 630-633 NNP denotes MTb
T19516 627-629 TO denotes to
T19515 618-626 NN denotes response
T19514 611-617 JJ denotes immune
T19513 604-610 NN denotes innate
T19512 599-603 NN denotes host
T19511 595-598 DT denotes the
T19510 590-594 IN denotes that
T19509 585-589 RB denotes here
T19508 571-584 NN denotes demonstration
T19507 567-570 PRP$ denotes our
T19506 564-566 IN denotes on
T19505 558-563 VBN denotes Based
T19504 556-557 . denotes .
T19503 555-556 NNP denotes ]
T19502 553-555 CD denotes 65
T19501 552-553 NNP denotes [
T19500 550-551 , denotes ,
T19499 549-550 NNP denotes ]
T19498 547-549 CD denotes 64
T19497 546-547 NNP denotes [
T19496 544-545 , denotes ,
T19495 543-544 NNP denotes ]
T19494 541-543 CD denotes 59
T19493 540-541 NNP denotes [
T19492 531-539 NN denotes activity
T19491 525-530 NNP denotes NFAT5
T19490 516-524 VB denotes regulate
T19489 513-515 TO denotes to
T19488 507-512 VBN denotes shown
T19487 502-506 VBN denotes been
T19486 497-501 VBP denotes have
T19485 480-496 NN denotes cell-stimulation
T19484 478-479 NNP denotes T
T19483 474-477 CC denotes and
T19482 472-473 , denotes ,
T19481 462-472 NN denotes activation
T19480 453-461 NN denotes integrin
T19470 422-424 CD denotes 63
T19469 421-422 NNP denotes [
T19468 419-420 NNP denotes ]
T19467 417-419 CD denotes 61
T19466 416-417 NNP denotes [
T19465 413-415 IN denotes in
T19464 404-412 VBN denotes reviewed
T19463 402-403 , denotes ,
T19462 401-402 NNP denotes ]
T19461 399-401 CD denotes 60
T19460 398-399 NNP denotes [
T19459 396-397 , denotes ,
T19458 395-396 NNP denotes ]
T19457 393-395 CD denotes 59
T19456 392-393 NNP denotes [
T19455 391-392 -LRB- denotes (
T19454 380-390 NN denotes activation
T19453 375-379 NN denotes gene
T19452 372-374 IN denotes in
T19451 368-371 NNP denotes Jun
T19450 364-367 CC denotes and
T19449 360-363 NNP denotes Fos
T19448 351-359 NNS denotes proteins
T19447 344-350 NN denotes zipper
T19446 329-343 JJ denotes region-leucine
T19445 323-328 JJ denotes basic
T19425 218-220 IN denotes in
T19424 212-217 NN denotes dimer
T19423 203-211 NN denotes obligate
T19422 200-202 DT denotes an
T19421 197-199 IN denotes as
T19420 193-196 NNP denotes DNA
T19419 187-192 VBZ denotes binds
T19418 181-186 NNP denotes NFAT5
T19417 179-180 , denotes ,
T19416 178-179 -RRB- denotes )
T19415 173-178 NNP denotes NFAT4
T19414 169-172 CC denotes and
T19413 167-168 , denotes ,
T19412 162-167 NNP denotes NFAT3
T19411 160-161 , denotes ,
T19410 155-160 NNP denotes NFATc
T19409 153-154 , denotes ,
T19408 148-153 NNP denotes NFATp
T19407 147-148 -LRB- denotes (
T19406 138-146 NNS denotes proteins
T19405 133-137 NNP denotes NFAT
T19404 127-132 JJ denotes other
T19403 123-126 DT denotes the
T19402 116-122 IN denotes Unlike
T19401 114-115 . denotes .
T19598 1120-1121 . denotes .
T19597 1095-1120 NN denotes transcription/replication
T19596 1089-1094 JJ denotes viral
T19595 1080-1088 JJ denotes enhanced
T19594 1076-1079 IN denotes for
T19593 1074-1075 , denotes ,
T19592 1072-1074 NN denotes TB
T19591 1069-1071 TO denotes to
T19590 1060-1068 NN denotes response
T19589 1053-1059 JJ denotes immune
T19588 1046-1052 NN denotes innate
T19587 1042-1045 DT denotes the
T19586 1039-1041 IN denotes of
T19585 1034-1038 NN denotes part
T19584 1031-1033 IN denotes as
T19583 1023-1030 VBN denotes induced
T19582 1020-1022 VBZ denotes is
T19581 1014-1019 WDT denotes which
T19580 1012-1013 , denotes ,
T19579 1007-1012 NNP denotes NFAT5
T19578 998-1006 VBN denotes co-opted
T19577 994-997 VBZ denotes has
T19576 988-993 NNP denotes HIV-1
T19575 986-987 , denotes ,
T19574 982-986 RB denotes Thus
T19573 980-981 . denotes .
T19572 972-980 NN denotes promoter
T19571 966-971 JJ denotes viral
T19570 962-965 DT denotes the
T19569 958-961 CC denotes and
T19568 952-957 CD denotes NFAT5
T19567 944-951 IN denotes between
T19566 932-943 NN denotes interaction
T19565 925-931 JJ denotes direct
T19541 779-783 VBP denotes have
T19540 776-778 PRP denotes We
T19539 774-775 . denotes .
T19538 766-774 NN denotes stimulus
T19537 755-765 JJ denotes additional
T19536 752-754 DT denotes an
T19535 749-751 IN denotes as
T19534 745-748 NNP denotes MTb
T19533 737-744 VB denotes include
T19532 734-736 TO denotes to
T19531 729-733 NN denotes list
T19530 724-728 DT denotes this
T19529 715-723 VBN denotes expanded
T19528 710-714 VBP denotes have
T19527 707-709 PRP denotes we
T19526 705-706 , denotes ,
T19525 695-705 NN denotes expression
T19524 690-694 NN denotes gene
T19523 684-689 CD denotes NFAT5
T19522 681-683 IN denotes of
T19521 668-680 NN denotes upregulation
T19400 113-114 NNP denotes ]
T19399 111-113 CD denotes 57
T19398 110-111 NNP denotes [
T19397 101-109 NNS denotes proteins
T19396 96-100 NNP denotes NFAT
T19395 93-95 IN denotes of
T19394 86-92 NN denotes family
T19393 82-85 NNP denotes Rel
T19392 78-81 DT denotes the
T19391 75-77 IN denotes of
T19390 68-74 NN denotes member
T19389 58-67 JJ denotes divergent
T19388 43-57 RB denotes evolutionarily
T19387 38-42 RBS denotes most
T19386 34-37 DT denotes the
T19385 31-33 VBZ denotes is
T19384 25-30 NNP denotes NFAT5
T19383 18-24 NN denotes factor
T19382 4-17 NN denotes transcription
T19381 0-3 DT denotes The
T19444 319-322 DT denotes the
T19443 314-318 IN denotes with
T19442 304-313 VB denotes cooperate
T19441 300-303 RB denotes not
T19440 295-299 VBZ denotes does
T19439 291-294 CC denotes and
T19438 289-290 , denotes ,
T19437 278-289 JJ denotes independent
T19436 266-277 JJ denotes calcineurin
T19435 263-265 VBZ denotes is
T19434 261-262 , denotes ,
T19433 260-261 NNP denotes ]
T19432 258-260 CD denotes 58
T19431 257-258 NNP denotes [
T19430 248-256 NNS denotes proteins
T19429 242-247 JJ denotes NF-κB
T19428 231-241 VBG denotes resembling
T19427 223-230 NN denotes fashion
T19426 221-222 DT denotes a
T19564 923-924 DT denotes a
T19563 919-922 IN denotes via
T19562 917-918 NNP denotes C
T19561 913-916 CC denotes and
T19560 911-912 NNP denotes B
T19559 902-910 NNS denotes subtypes
T19558 896-901 JJ denotes HIV-1
T19557 893-895 IN denotes of
T19556 881-892 NN denotes replication
T19555 877-880 DT denotes the
T19554 868-876 VBZ denotes enhances
T19553 864-867 NNP denotes MTb
T19552 859-863 IN denotes that
T19551 851-858 VBG denotes showing
T19550 848-850 IN denotes by
T19549 837-847 NN denotes expression
T19548 832-836 NN denotes gene
T19547 826-831 NNP denotes HIV-1
T19546 811-825 NNP denotes MTb-stimulated
T19545 808-810 TO denotes to
T19544 796-807 NN denotes observation
T19543 791-795 DT denotes this
T19542 784-790 VBN denotes linked
R14086 T19393 T19394 compound Rel,family
R14087 T19394 T19391 pobj family,of
R14088 T19395 T19394 prep of,family
R14089 T19396 T19397 compound NFAT,proteins
R14090 T19397 T19395 pobj proteins,of
R14091 T19398 T19390 appos [,member
R14092 T19399 T19400 nummod 57,]
R14093 T19400 T19390 appos ],member
R14094 T19401 T19385 punct .,is
R14095 T19402 T19419 prep Unlike,binds
R14096 T19403 T19406 det the,proteins
R14097 T19404 T19406 amod other,proteins
R14098 T19405 T19406 compound NFAT,proteins
R14099 T19406 T19402 pobj proteins,Unlike
R14100 T19407 T19419 punct (,binds
R14101 T19408 T19419 advmod NFATp,binds
R14102 T19409 T19408 punct ",",NFATp
R14103 T19410 T19408 conj NFATc,NFATp
R14104 T19411 T19410 punct ",",NFATc
R14105 T19412 T19410 conj NFAT3,NFATc
R14106 T19413 T19412 punct ",",NFAT3
R14107 T19414 T19412 cc and,NFAT3
R14108 T19415 T19412 conj NFAT4,NFAT3
R14109 T19416 T19415 punct ),NFAT4
R14110 T19417 T19419 punct ",",binds
R14111 T19418 T19419 nsubj NFAT5,binds
R14112 T19419 T19419 ROOT binds,binds
R14113 T19420 T19419 dobj DNA,binds
R14114 T19421 T19419 prep as,binds
R14115 T19422 T19424 det an,dimer
R14116 T19423 T19424 compound obligate,dimer
R14117 T19424 T19421 pobj dimer,as
R14118 T19425 T19424 prep in,dimer
R14119 T19426 T19427 det a,fashion
R14120 T19427 T19425 pobj fashion,in
R14121 T19428 T19424 prep resembling,dimer
R14122 T19429 T19430 amod NF-κB,proteins
R14123 T19430 T19433 nmod proteins,]
R14124 T19431 T19433 nmod [,]
R14125 T19432 T19433 nummod 58,]
R14126 T19433 T19428 dobj ],resembling
R14127 T19434 T19419 punct ",",binds
R14128 T19435 T19419 dep is,binds
R14129 T19436 T19437 advmod calcineurin,independent
R14130 T19437 T19435 acomp independent,is
R14131 T19438 T19435 punct ",",is
R14132 T19439 T19435 cc and,is
R14133 T19440 T19442 aux does,cooperate
R14134 T19441 T19442 neg not,cooperate
R14135 T19442 T19435 conj cooperate,is
R14136 T19443 T19442 prep with,cooperate
R14137 T19444 T19448 det the,proteins
R14138 T19445 T19448 amod basic,proteins
R14139 T19446 T19448 amod region-leucine,proteins
R14140 T19447 T19448 compound zipper,proteins
R14141 T19448 T19443 pobj proteins,with
R14142 T19449 T19448 appos Fos,proteins
R14143 T19450 T19449 cc and,Fos
R14144 T19451 T19449 conj Jun,Fos
R14145 T19452 T19448 prep in,proteins
R14146 T19453 T19454 compound gene,activation
R14147 T19454 T19452 pobj activation,in
R14148 T19455 T19442 punct (,cooperate
R14149 T19456 T19458 nmod [,]
R14150 T19457 T19458 nummod 59,]
R14151 T19458 T19464 nsubj ],reviewed
R14152 T19459 T19458 punct ",",]
R14153 T19460 T19462 nmod [,]
R14154 T19461 T19462 nummod 60,]
R14155 T19462 T19458 conj ],]
R14156 T19463 T19462 punct ",",]
R14157 T19464 T19442 conj reviewed,cooperate
R14158 T19465 T19464 prep in,reviewed
R14159 T19466 T19465 pobj [,in
R14160 T19467 T19468 nummod 61,]
R14161 T19468 T19464 npadvmod ],reviewed
R14162 T19469 T19468 appos [,]
R14163 T19470 T19471 nummod 63,]
R14164 T19471 T19468 appos ],]
R14165 T19472 T19468 punct ),]
R14166 T19473 T19419 punct .,binds
R14167 T19474 T19488 prep To,shown
R14168 T19475 T19474 pobj date,To
R14169 T19476 T19488 punct ",",shown
R14170 T19477 T19478 amod osmotic,stress
R14171 T19478 T19488 nsubjpass stress,shown
R14172 T19479 T19478 punct ",",stress
R14173 T19480 T19481 compound integrin,activation
R14174 T19481 T19478 conj activation,stress
R14175 T19482 T19481 punct ",",activation
R14176 T19483 T19481 cc and,activation
R14177 T19484 T19485 compound T,cell-stimulation
R14178 T19485 T19481 conj cell-stimulation,activation
R14179 T19486 T19488 aux have,shown
R14180 T19487 T19488 auxpass been,shown
R14181 T19488 T19488 ROOT shown,shown
R14182 T19489 T19490 aux to,regulate
R14183 T19490 T19488 xcomp regulate,shown
R14184 T19491 T19492 compound NFAT5,activity
R14185 T19492 T19490 dobj activity,regulate
R14186 T19493 T19495 nmod [,]
R14187 T19494 T19495 nummod 59,]
R14188 T19495 T19492 appos ],activity
R14189 T19496 T19495 punct ",",]
R14190 T19497 T19499 nmod [,]
R14191 T19498 T19499 nummod 64,]
R14192 T19499 T19495 conj ],]
R14193 T19500 T19499 punct ",",]
R14194 T19501 T19499 conj [,]
R14195 T19502 T19503 nummod 65,]
R14196 T19503 T19499 conj ],]
R14197 T19504 T19488 punct .,shown
R14198 T19505 T19529 prep Based,expanded
R14199 T19506 T19505 prep on,Based
R14200 T19507 T19508 poss our,demonstration
R14201 T19508 T19506 pobj demonstration,on
R14202 T19509 T19508 advmod here,demonstration
R14203 T19510 T19519 mark that,induces
R14204 T19511 T19515 det the,response
R14205 T19512 T19515 amod host,response
R14206 T19513 T19515 amod innate,response
R14207 T19514 T19515 amod immune,response
R14208 T19515 T19519 nsubj response,induces
R14209 T19516 T19515 prep to,response
R14210 T19517 T19518 amod MTb,infection
R14211 T19518 T19516 pobj infection,to
R14212 T19519 T19508 acl induces,demonstration
R14213 T19520 T19521 amod MyD88-dependent,upregulation
R14214 T19521 T19519 dobj upregulation,induces
R14215 T19522 T19521 prep of,upregulation
R14216 T19523 T19525 nummod NFAT5,expression
R14217 T19524 T19525 compound gene,expression
R14218 T19525 T19522 pobj expression,of
R14219 T19526 T19529 punct ",",expanded
R14220 T19527 T19529 nsubj we,expanded
R14221 T19528 T19529 aux have,expanded
R14222 T19529 T19529 ROOT expanded,expanded
R14223 T19530 T19531 det this,list
R14224 T19531 T19529 dobj list,expanded
R14225 T19532 T19533 aux to,include
R14226 T19533 T19529 advcl include,expanded
R14227 T19534 T19533 dobj MTb,include
R14228 T19535 T19533 prep as,include
R14229 T19536 T19538 det an,stimulus
R14230 T19537 T19538 amod additional,stimulus
R14231 T19538 T19535 pobj stimulus,as
R14232 T19539 T19529 punct .,expanded
R14233 T19540 T19542 nsubj We,linked
R14234 T19541 T19542 aux have,linked
R14235 T19542 T19542 ROOT linked,linked
R14236 T19543 T19544 det this,observation
R14237 T19544 T19542 dobj observation,linked
R14238 T19545 T19542 prep to,linked
R14239 T19546 T19549 compound MTb-stimulated,expression
R14240 T19547 T19549 compound HIV-1,expression
R14241 T19548 T19549 compound gene,expression
R14242 T19549 T19545 pobj expression,to
R14243 T19550 T19542 prep by,linked
R14244 T19551 T19550 pcomp showing,by
R14245 T19552 T19554 mark that,enhances
R14246 T19553 T19554 nsubj MTb,enhances
R14247 T19554 T19551 ccomp enhances,showing
R14248 T19555 T19556 det the,replication
R14249 T19556 T19554 dobj replication,enhances
R14250 T19557 T19556 prep of,replication
R14251 T19558 T19560 amod HIV-1,B
R14252 T19559 T19560 compound subtypes,B
R14253 T19560 T19557 pobj B,of
R14254 T19561 T19560 cc and,B
R14255 T19562 T19560 conj C,B
R14256 T19563 T19554 prep via,enhances
R14257 T19564 T19566 det a,interaction
R14258 T19565 T19566 amod direct,interaction
R14259 T19566 T19563 pobj interaction,via
R14260 T19567 T19566 prep between,interaction
R14261 T19568 T19567 pobj NFAT5,between
R14262 T19569 T19568 cc and,NFAT5
R14263 T19570 T19572 det the,promoter
R14264 T19571 T19572 amod viral,promoter
R14265 T19572 T19568 conj promoter,NFAT5
R14266 T19573 T19542 punct .,linked
R14267 T19574 T19578 advmod Thus,co-opted
R14268 T19575 T19578 punct ",",co-opted
R14269 T19576 T19578 nsubj HIV-1,co-opted
R14270 T19577 T19578 aux has,co-opted
R14271 T19578 T19578 ROOT co-opted,co-opted
R14272 T19579 T19578 dobj NFAT5,co-opted
R14273 T19580 T19579 punct ",",NFAT5
R14274 T19581 T19583 nsubjpass which,induced
R14275 T19582 T19583 auxpass is,induced
R14276 T19583 T19579 relcl induced,NFAT5
R14277 T19584 T19583 prep as,induced
R14278 T19585 T19584 pobj part,as
R14279 T19586 T19585 prep of,part
R14280 T19587 T19590 det the,response
R14281 T19588 T19590 amod innate,response
R14282 T19589 T19590 amod immune,response
R14283 T19590 T19586 pobj response,of
R14284 T19591 T19590 prep to,response
R14285 T19592 T19591 pobj TB,to
R14286 T19593 T19583 punct ",",induced
R14287 T19594 T19583 prep for,induced
R14288 T19595 T19597 amod enhanced,transcription/replication
R14289 T19596 T19597 amod viral,transcription/replication
R14290 T19597 T19594 pobj transcription/replication,for
R14291 T19598 T19578 punct .,co-opted
R14074 T19381 T19383 det The,factor
R14075 T19382 T19383 compound transcription,factor
R14076 T19383 T19385 nsubj factor,is
R14077 T19384 T19385 nsubj NFAT5,is
R14078 T19385 T19385 ROOT is,is
R14079 T19386 T19390 det the,member
R14080 T19387 T19388 advmod most,evolutionarily
R14081 T19388 T19389 advmod evolutionarily,divergent
R14082 T19389 T19390 amod divergent,member
R14083 T19390 T19385 attr member,is
R14084 T19391 T19390 prep of,member
R14085 T19392 T19394 det the,family

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19112 1023-1030 Positive_regulation denotes induced
T19111 1007-1012 Protein denotes NFAT5
T19110 932-943 Binding denotes interaction
T19109 952-957 Protein denotes NFAT5
T19108 644-651 Positive_regulation denotes induces
T19107 668-680 Positive_regulation denotes upregulation
T19106 695-705 Gene_expression denotes expression
T19105 684-694 Protein denotes NFAT5 gene
T19104 652-657 Protein denotes MyD88
T19103 516-524 Regulation denotes regulate
T19102 525-530 Protein denotes NFAT5
T19101 453-461 Protein denotes integrin
T19100 304-313 Binding denotes cooperate
T19099 304-313 Binding denotes cooperate
T19098 304-313 Binding denotes cooperate
T19097 368-371 Protein denotes Jun
T19096 360-363 Protein denotes Fos
T19095 266-277 Protein denotes calcineurin
T19094 242-256 Protein denotes NF-κB proteins
T19093 181-186 Protein denotes NFAT5
T19092 173-178 Protein denotes NFAT4
T19091 162-167 Protein denotes NFAT3
T19090 155-160 Protein denotes NFATc
T19089 148-153 Protein denotes NFATp
T19088 133-146 Protein denotes NFAT proteins
T19087 96-100 Protein denotes NFAT
T19086 82-92 Protein denotes Rel family
T19085 25-30 Protein denotes NFAT5
R13936 T19093 T19098 themeOf NFAT5,cooperate
R13937 T19093 T19099 themeOf NFAT5,cooperate
R13938 T19093 T19100 themeOf NFAT5,cooperate
R13939 T19096 T19099 themeOf Fos,cooperate
R13940 T19097 T19100 themeOf Jun,cooperate
R13941 T19102 T19103 themeOf NFAT5,regulate
R13942 T19104 T19107 causeOf MyD88,upregulation
R13943 T19105 T19106 themeOf NFAT5 gene,expression
R13944 T19106 T19107 themeOf expression,upregulation
R13945 T19107 T19108 themeOf upregulation,induces
R13946 T19109 T19110 themeOf NFAT5,interaction
R13947 T19111 T19112 themeOf NFAT5,induced

testone

Id Subject Object Predicate Lexical cue
T17071 932-943 Binding denotes interaction
T17070 695-705 Gene_expression denotes expression
T17069 668-680 Positive_regulation denotes upregulation
T17068 644-651 Positive_regulation denotes induces
T17067 187-192 Binding denotes binds
T17033 1007-1012 Protein denotes NFAT5
T17032 952-957 Protein denotes NFAT5
T17031 684-689 Protein denotes NFAT5
T17030 652-657 Protein denotes MyD88
T17029 525-530 Protein denotes NFAT5
T17028 368-371 Protein denotes Jun
T17027 360-363 Protein denotes Fos
T17026 266-277 Protein denotes calcineurin
T17025 181-186 Protein denotes NFAT5
T17024 173-178 Protein denotes NFAT4
T17023 162-167 Protein denotes NFAT3
T17022 155-160 Protein denotes NFATc
T17021 148-153 Protein denotes NFATp
T17020 25-30 Protein denotes NFAT5
R12465 T17025 T17067 themeOf NFAT5,binds
R12466 T17031 T17070 themeOf NFAT5,expression
R12462 T17022 T17067 themeOf NFATc,binds
R12463 T17023 T17067 themeOf NFAT3,binds
R12464 T17024 T17067 themeOf NFAT4,binds
R12467 T17032 T17071 themeOf NFAT5,interaction
R12481 T17069 T17068 themeOf upregulation,induces
R12482 T17070 T17069 themeOf expression,upregulation

test3

Id Subject Object Predicate Lexical cue
T17160 1007-1012 Protein denotes NFAT5
T17159 952-957 Protein denotes NFAT5
T17158 932-943 Binding denotes interaction
T17157 684-689 Protein denotes NFAT5
T17156 668-680 Positive_regulation denotes upregulation
T17155 652-657 Protein denotes MyD88
T17154 525-530 Protein denotes NFAT5
T17153 368-371 Protein denotes Jun
T17152 360-363 Protein denotes Fos
T17151 266-277 Protein denotes calcineurin
T17150 187-192 Binding denotes binds
T17149 181-186 Protein denotes NFAT5
T17148 173-178 Protein denotes NFAT4
T17147 162-167 Protein denotes NFAT3
T17146 155-160 Protein denotes NFATc
T17145 148-153 Protein denotes NFATp
T17144 25-30 Protein denotes NFAT5
T17110 1007-1012 Protein denotes NFAT5
T17109 952-957 Protein denotes NFAT5
T17108 684-689 Protein denotes NFAT5
T17107 652-657 Protein denotes MyD88
T17106 525-530 Protein denotes NFAT5
T17105 368-371 Protein denotes Jun
T17104 360-363 Protein denotes Fos
T17103 266-277 Protein denotes calcineurin
T17102 181-186 Protein denotes NFAT5
T17101 173-178 Protein denotes NFAT4
T17100 162-167 Protein denotes NFAT3
T17099 155-160 Protein denotes NFATc
T17098 148-153 Protein denotes NFATp
T17097 25-30 Protein denotes NFAT5
R12490 T17145 T17150 themeOf NFATp,binds
R12491 T17146 T17150 themeOf NFATc,binds
R12492 T17147 T17150 themeOf NFAT3,binds
R12493 T17148 T17151 themeOf NFAT4,calcineurin
R12494 T17148 T17150 themeOf NFAT4,binds
R12495 T17149 T17150 themeOf NFAT5,binds
R12496 T17159 T17158 themeOf NFAT5,interaction