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PMC:3320587 / 45918-46128 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15603 204-209 NN denotes TRAF6
T15602 200-203 CC denotes and
T15601 194-199 NN denotes IRAK1
T15600 184-193 NN denotes molecules
T15599 176-183 NN denotes adaptor
T15598 159-175 JJ denotes MyD88-associated
T15597 155-158 DT denotes the
T15596 151-154 CC denotes and
T15595 145-150 NN denotes MyD88
T15594 142-144 IN denotes of
T15593 131-141 NN denotes activation
T15592 122-130 VB denotes requires
T15591 116-121 NN denotes cells
T15590 106-115 JJ denotes monocytic
T15589 100-105 JJ denotes human
T15588 97-99 IN denotes in
T15587 86-96 NN denotes expression
T15586 81-85 NN denotes gene
T15585 75-80 NN denotes NFAT5
T15584 72-74 IN denotes of
T15583 59-71 NN denotes upregulation
T15582 55-58 NN denotes MTb
T15581 50-54 IN denotes that
T15580 38-49 VB denotes demonstrate
T15579 30-37 RB denotes clearly
T15578 22-29 NN denotes results
T15577 16-21 DT denotes these
T15576 14-15 -COMMA- denotes ,
T15575 6-14 RB denotes together
T15574 0-5 VB denotes Taken
R11472 T15574 T15575 arg1Of Taken,together
R11473 T15578 T15577 arg1Of results,these
R11474 T15578 T15580 arg1Of results,demonstrate
R11475 T15580 T15574 modOf demonstrate,Taken
R11476 T15580 T15576 arg1Of demonstrate,","
R11477 T15580 T15579 arg1Of demonstrate,clearly
R11478 T15583 T15582 arg1Of upregulation,MTb
R11479 T15583 T15584 arg1Of upregulation,of
R11480 T15583 T15592 arg1Of upregulation,requires
R11481 T15587 T15584 arg2Of expression,of
R11482 T15587 T15585 arg1Of expression,NFAT5
R11483 T15587 T15586 arg1Of expression,gene
R11484 T15587 T15588 arg1Of expression,in
R11485 T15591 T15588 arg2Of cells,in
R11486 T15591 T15589 arg1Of cells,human
R11487 T15591 T15590 arg1Of cells,monocytic
R11488 T15592 T15580 arg2Of requires,demonstrate
R11489 T15592 T15581 arg1Of requires,that
R11490 T15593 T15594 arg1Of activation,of
R11491 T15593 T15596 arg1Of activation,and
R11492 T15595 T15594 arg2Of MyD88,of
R11493 T15596 T15592 arg2Of and,requires
R11494 T15600 T15597 arg1Of molecules,the
R11495 T15600 T15598 arg1Of molecules,MyD88-associated
R11496 T15600 T15599 arg1Of molecules,adaptor
R11497 T15601 T15602 arg1Of IRAK1,and
R11498 T15602 T15596 arg2Of and,and
R11499 T15602 T15600 arg1Of and,molecules
R11500 T15603 T15602 arg2Of TRAF6,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14958 204-209 Protein denotes TRAF6
T14957 194-199 Protein denotes IRAK1
T14956 159-164 Protein denotes MyD88
T14955 145-150 Protein denotes MyD88
T14954 75-80 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15651 204-209 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T15631 159-164 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T15630 145-150 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T15617 75-80 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T14967 81-96 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

GO-CC

Id Subject Object Predicate Lexical cue
T14983 116-121 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T14784 0-210 Sentence denotes Taken together, these results clearly demonstrate that MTb upregulation of NFAT5 gene expression in human monocytic cells requires activation of MyD88 and the MyD88-associated adaptor molecules IRAK1 and TRAF6.
T271 0-210 Sentence denotes Taken together, these results clearly demonstrate that MTb upregulation of NFAT5 gene expression in human monocytic cells requires activation of MyD88 and the MyD88-associated adaptor molecules IRAK1 and TRAF6.

simple1

Id Subject Object Predicate Lexical cue
T15038 204-209 Protein denotes TRAF6
T15037 194-199 Protein denotes IRAK1
T15036 159-164 Protein denotes MyD88
T15035 145-150 Protein denotes MyD88
T15034 75-80 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16738 204-209 Protein denotes TRAF6
T16737 194-199 Protein denotes IRAK1
T16736 159-164 Protein denotes MyD88
T16735 145-150 Protein denotes MyD88
T16734 75-80 Protein denotes NFAT5
T16794 131-141 Positive_regulation denotes activation
T16793 59-71 Positive_regulation denotes upregulation
T16792 86-96 Gene_expression denotes expression
T16791 122-130 Positive_regulation denotes requires
R12410 T16734 T16792 themeOf NFAT5,expression
R12411 T16735 T16794 themeOf MyD88,activation
R12412 T16737 T16791 themeOf IRAK1,requires
R12413 T16738 T16791 themeOf TRAF6,requires
R12429 T16792 T16793 themeOf expression,upregulation
R12430 T16794 T16791 themeOf activation,requires

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15821 204-209 Protein denotes TRAF6
T15820 194-199 Protein denotes IRAK1
T15819 159-164 Protein denotes MyD88
T15818 145-150 Protein denotes MyD88
T15817 75-80 Protein denotes NFAT5
T15869 86-96 Gene_expression denotes expression
T15868 59-71 Positive_regulation denotes upregulation
T15867 165-175 Binding denotes associated
T15866 131-141 Positive_regulation denotes activation
T15865 122-130 Positive_regulation denotes requires
R11642 T15817 T15869 themeOf NFAT5,expression
R11643 T15818 T15866 themeOf MyD88,activation
R11644 T15819 T15867 themeOf MyD88,associated
R11668 T15866 T15865 themeOf activation,requires
R11669 T15869 T15868 themeOf expression,upregulation

DLUT931

Id Subject Object Predicate Lexical cue
T15706 204-209 Protein denotes TRAF6
T15705 194-199 Protein denotes IRAK1
T15704 159-164 Protein denotes MyD88
T15703 145-150 Protein denotes MyD88
T15702 75-80 Protein denotes NFAT5
T15766 122-130 Positive_regulation denotes requires
T15765 59-71 Positive_regulation denotes upregulation
T15764 165-175 Binding denotes associated
T15763 131-141 Positive_regulation denotes activation
T15762 86-96 Gene_expression denotes expression
R11545 T15702 T15762 themeOf NFAT5,expression
R11546 T15703 T15763 themeOf MyD88,activation
R11547 T15704 T15764 themeOf MyD88,associated
R11549 T15705 T15764 themeOf IRAK1,associated
R11596 T15762 T15765 themeOf expression,upregulation
R11597 T15763 T15766 themeOf activation,requires
R11600 T15765 T15766 causeOf upregulation,requires
R11548 T15704 T15764 themeOf MyD88,associated
R11550 T15706 T15764 themeOf TRAF6,associated
R11598 T15764 T15766 themeOf associated,requires
R11599 T15764 T15766 themeOf associated,requires
R11601 T15765 T15766 causeOf upregulation,requires
R11602 T15765 T15766 causeOf upregulation,requires

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16911 131-150 Positive_regulation denotes activation of MyD88
T16909 6-96 Positive_regulation denotes together, these results clearly demonstrate that MTb upregulation of NFAT5 gene expression
T16893 72-96 Gene_expression denotes of NFAT5 gene expression
T16881 142-150 Protein denotes of MyD88
T16872 184-193 Entity denotes molecules
T16857 55-58 Protein denotes MTb
T16846 75-80 Protein denotes NFAT5
T16840 194-199 Protein denotes IRAK1
T16837 204-209 Protein denotes TRAF6
T16812 155-164 Protein denotes the MyD88
T16810 116-121 Entity denotes cells
R12445 T16846 T16893 themeOf NFAT5,of NFAT5 gene expression
R12448 T16857 T16909 causeOf MTb,"together, these results clearly demonstrate that MTb upregulation of NFAT5 gene expression"
R12454 T16881 T16911 themeOf of MyD88,activation of MyD88
R12458 T16893 T16909 themeOf of NFAT5 gene expression,"together, these results clearly demonstrate that MTb upregulation of NFAT5 gene expression"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16683 209-210 . denotes .
T16682 204-209 NNP denotes TRAF6
T16681 200-203 CC denotes and
T16680 194-199 NNP denotes IRAK1
T16679 184-193 NNS denotes molecules
T16678 176-183 NN denotes adaptor
T16677 159-175 JJ denotes MyD88-associated
T16676 155-158 DT denotes the
T16675 151-154 CC denotes and
T16674 145-150 NNP denotes MyD88
T16673 142-144 IN denotes of
T16672 131-141 NN denotes activation
T16671 122-130 VBZ denotes requires
T16670 116-121 NNS denotes cells
T16669 106-115 JJ denotes monocytic
T16668 100-105 JJ denotes human
T16667 97-99 IN denotes in
T16666 86-96 NN denotes expression
T16665 81-85 NN denotes gene
T16664 75-80 CD denotes NFAT5
T16663 72-74 IN denotes of
T16662 59-71 NN denotes upregulation
T16661 55-58 NNP denotes MTb
T16660 50-54 IN denotes that
T16659 38-49 VBP denotes demonstrate
T16658 30-37 RB denotes clearly
T16657 22-29 NNS denotes results
T16656 16-21 DT denotes these
T16655 14-15 , denotes ,
T16654 6-14 RB denotes together
T16653 0-5 VBN denotes Taken
R12332 T16653 T16659 advcl Taken,demonstrate
R12333 T16654 T16653 advmod together,Taken
R12334 T16655 T16659 punct ",",demonstrate
R12335 T16656 T16657 det these,results
R12336 T16657 T16659 nsubj results,demonstrate
R12337 T16658 T16659 advmod clearly,demonstrate
R12338 T16659 T16659 ROOT demonstrate,demonstrate
R12339 T16660 T16671 mark that,requires
R12340 T16661 T16662 compound MTb,upregulation
R12341 T16662 T16671 nsubj upregulation,requires
R12342 T16663 T16662 prep of,upregulation
R12343 T16664 T16666 nummod NFAT5,expression
R12344 T16665 T16666 compound gene,expression
R12345 T16666 T16663 pobj expression,of
R12346 T16667 T16666 prep in,expression
R12347 T16668 T16670 amod human,cells
R12348 T16669 T16670 amod monocytic,cells
R12349 T16670 T16667 pobj cells,in
R12350 T16671 T16659 ccomp requires,demonstrate
R12351 T16672 T16671 dobj activation,requires
R12352 T16673 T16672 prep of,activation
R12353 T16674 T16673 pobj MyD88,of
R12354 T16675 T16672 cc and,activation
R12355 T16676 T16679 det the,molecules
R12356 T16677 T16679 amod MyD88-associated,molecules
R12357 T16678 T16679 compound adaptor,molecules
R12358 T16679 T16680 nmod molecules,IRAK1
R12359 T16680 T16672 conj IRAK1,activation
R12360 T16681 T16680 cc and,IRAK1
R12361 T16682 T16680 conj TRAF6,IRAK1
R12362 T16683 T16659 punct .,demonstrate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16047 122-130 Positive_regulation denotes requires
T16046 59-71 Positive_regulation denotes upregulation
T16045 131-141 Positive_regulation denotes activation
T16044 86-96 Gene_expression denotes expression
T16043 204-209 Protein denotes TRAF6
T16042 194-199 Protein denotes IRAK1
T16041 159-164 Protein denotes MyD88
T16040 145-150 Protein denotes MyD88
T16039 75-85 Protein denotes NFAT5 gene
R11759 T16039 T16044 themeOf NFAT5 gene,expression
R11760 T16040 T16045 themeOf MyD88,activation
R11761 T16044 T16046 themeOf expression,upregulation
R11762 T16045 T16047 themeOf activation,requires
R11763 T16046 T16047 causeOf upregulation,requires

testone

Id Subject Object Predicate Lexical cue
T14629 165-175 Binding denotes associated
T14628 131-141 Positive_regulation denotes activation
T14627 122-130 Positive_regulation denotes requires
T14626 86-96 Gene_expression denotes expression
T14625 59-71 Positive_regulation denotes upregulation
T14595 204-209 Protein denotes TRAF6
T14594 194-199 Protein denotes IRAK1
T14593 159-164 Protein denotes MyD88
T14592 145-150 Protein denotes MyD88
T14591 75-80 Protein denotes NFAT5
R10835 T14591 T14626 themeOf NFAT5,expression
R10836 T14592 T14628 themeOf MyD88,activation
R10837 T14593 T14629 themeOf MyD88,associated
R10838 T14594 T14628 themeOf IRAK1,activation
R10839 T14595 T14628 themeOf TRAF6,activation
R10852 T14626 T14625 themeOf expression,upregulation

test3

Id Subject Object Predicate Lexical cue
T14684 204-209 Protein denotes TRAF6
T14683 194-199 Protein denotes IRAK1
T14682 159-164 Protein denotes MyD88
T14681 145-150 Protein denotes MyD88
T14680 75-80 Protein denotes NFAT5
T14765 204-209 Protein denotes TRAF6
T14764 194-199 Protein denotes IRAK1
T14763 165-175 Binding denotes associated
T14762 159-164 Protein denotes MyD88
T14761 145-150 Protein denotes MyD88
T14760 131-141 Positive_regulation denotes activation
T14759 86-96 Gene_expression denotes expression
T14758 75-80 Protein denotes NFAT5
T14757 59-71 Positive_regulation denotes upregulation
R10877 T14758 T14759 themeOf NFAT5,expression
R10878 T14759 T14757 themeOf expression,upregulation
R10879 T14761 T14760 themeOf MyD88,activation
R10880 T14761 T14763 themeOf MyD88,associated
R10881 T14762 T14763 themeOf MyD88,associated
R10882 T14764 T14760 themeOf IRAK1,activation
R10883 T14764 T14763 themeOf IRAK1,associated
R10884 T14765 T14760 themeOf TRAF6,activation