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PMC:3320587 / 44680-44784 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-10588727-98010800 37-39 10588727 denotes 21
22496647-11238656-98010801 43-45 11238656 denotes 54
22496647-15599404-98010802 49-51 15599404 denotes 55

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15384 97-103 NN denotes levels
T15383 92-96 NN denotes mRNA
T15382 88-91 NN denotes TNF
T15381 79-87 VB denotes measured
T15380 76-78 PRP denotes we
T15379 68-75 NN denotes control
T15378 59-67 JJ denotes positive
T15377 57-58 DT denotes a
T15376 54-56 IN denotes as
T15375 52-53 -COMMA- denotes ,
T15374 51-52 -RRB- denotes ]
T15373 49-51 CD denotes 55
T15372 48-49 -LRB- denotes [
T15371 46-47 -COMMA- denotes ,
T15370 45-46 -RRB- denotes ]
T15369 43-45 CD denotes 54
T15368 42-43 -LRB- denotes [
T15367 40-41 -COMMA- denotes ,
T15366 39-40 -RRB- denotes ]
T15365 37-39 CD denotes 21
T15364 36-37 -LRB- denotes [
T15363 31-35 NN denotes gene
T15362 15-30 JJ denotes MyD88-dependent
T15361 13-14 DT denotes a
T15360 10-12 VB denotes is
T15359 6-9 NN denotes TNF
T15358 0-5 IN denotes Since
R11253 T15359 T15360 arg1Of TNF,is
R11254 T15360 T15358 arg2Of is,Since
R11255 T15360 T15367 arg1Of is,","
R11256 T15360 T15368 arg1Of is,[
R11257 T15360 T15371 arg1Of is,","
R11258 T15360 T15372 arg1Of is,[
R11259 T15360 T15375 arg1Of is,","
R11260 T15363 T15360 arg2Of gene,is
R11261 T15363 T15361 arg1Of gene,a
R11262 T15363 T15362 arg1Of gene,MyD88-dependent
R11263 T15363 T15364 arg1Of gene,[
R11264 T15365 T15364 arg2Of 21,[
R11265 T15366 T15364 arg3Of ],[
R11266 T15369 T15368 arg2Of 54,[
R11267 T15370 T15368 arg3Of ],[
R11268 T15373 T15372 arg2Of 55,[
R11269 T15374 T15372 arg3Of ],[
R11270 T15379 T15376 arg2Of control,as
R11271 T15379 T15377 arg1Of control,a
R11272 T15379 T15378 arg1Of control,positive
R11273 T15380 T15381 arg1Of we,measured
R11274 T15381 T15358 arg1Of measured,Since
R11275 T15381 T15376 arg1Of measured,as
R11276 T15384 T15381 arg2Of levels,measured
R11277 T15384 T15382 arg1Of levels,TNF
R11278 T15384 T15383 arg1Of levels,mRNA

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14925 88-91 Protein denotes TNF
T14924 15-20 Protein denotes MyD88
T14923 6-9 Protein denotes TNF

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15637 88-91 http://www.uniprot.org/uniprot/P01375 denotes TNF
T15636 6-9 http://www.uniprot.org/uniprot/P01375 denotes TNF
T15623 15-20 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

sentences

Id Subject Object Predicate Lexical cue
T14776 0-104 Sentence denotes Since TNF is a MyD88-dependent gene [21], [54], [55], as a positive control we measured TNF mRNA levels.
T263 0-104 Sentence denotes Since TNF is a MyD88-dependent gene [21], [54], [55], as a positive control we measured TNF mRNA levels.

simple1

Id Subject Object Predicate Lexical cue
T15005 88-91 Protein denotes TNF
T15004 15-20 Protein denotes MyD88
T15003 6-9 Protein denotes TNF

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16762 97-103 Transcription denotes levels
T16705 88-91 Protein denotes TNF
T16704 15-20 Protein denotes MyD88
T16703 6-9 Protein denotes TNF
R12381 T16705 T16762 themeOf TNF,levels

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15838 21-30 Positive_regulation denotes dependent
T15788 88-91 Protein denotes TNF
T15787 15-20 Protein denotes MyD88
T15786 6-9 Protein denotes TNF
R11615 T15786 T15838 themeOf TNF,dependent
R11616 T15787 T15838 causeOf MyD88,dependent

DLUT931

Id Subject Object Predicate Lexical cue
T15673 88-91 Protein denotes TNF
T15672 15-20 Protein denotes MyD88
T15671 6-9 Protein denotes TNF
T15730 21-30 Regulation denotes dependent
R11517 T15671 T15730 themeOf TNF,dependent
R11518 T15672 T15730 causeOf MyD88,dependent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16861 13-52 Protein denotes a MyD88-dependent gene [21], [54], [55]
T16856 15-30 Protein denotes MyD88-dependent
T16826 88-91 Protein denotes TNF
T16802 6-9 Protein denotes TNF

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16453 103-104 . denotes .
T16452 97-103 NNS denotes levels
T16451 92-96 NNP denotes mRNA
T16450 88-91 NNP denotes TNF
T16449 79-87 VBD denotes measured
T16448 76-78 PRP denotes we
T16447 68-75 NN denotes control
T16446 59-67 JJ denotes positive
T16445 57-58 DT denotes a
T16444 54-56 IN denotes as
T16443 52-53 , denotes ,
T16442 51-52 NNP denotes ]
T16441 49-51 CD denotes 55
T16440 48-49 NNP denotes [
T16439 46-47 , denotes ,
T16438 45-46 NNP denotes ]
T16437 43-45 CD denotes 54
T16436 42-43 NNP denotes [
T16435 40-41 , denotes ,
T16434 39-40 NNP denotes ]
T16433 37-39 CD denotes 21
T16432 36-37 NNP denotes [
T16431 31-35 NN denotes gene
T16430 15-30 JJ denotes MyD88-dependent
T16429 13-14 DT denotes a
T16428 10-12 VBZ denotes is
T16427 6-9 NNP denotes TNF
T16426 0-5 IN denotes Since
R12105 T16426 T16428 mark Since,is
R12106 T16427 T16428 nsubj TNF,is
R12107 T16428 T16428 ROOT is,is
R12108 T16429 T16431 det a,gene
R12109 T16430 T16431 amod MyD88-dependent,gene
R12110 T16431 T16428 attr gene,is
R12111 T16432 T16434 nmod [,]
R12112 T16433 T16434 nummod 21,]
R12113 T16434 T16431 appos ],gene
R12114 T16435 T16434 punct ",",]
R12115 T16436 T16434 conj [,]
R12116 T16437 T16438 nummod 54,]
R12117 T16438 T16442 nmod ],]
R12118 T16439 T16438 punct ",",]
R12119 T16440 T16438 conj [,]
R12120 T16441 T16442 nummod 55,]
R12121 T16442 T16434 conj ],]
R12122 T16443 T16442 punct ",",]
R12123 T16444 T16428 prep as,is
R12124 T16445 T16447 det a,control
R12125 T16446 T16447 amod positive,control
R12126 T16447 T16444 pobj control,as
R12127 T16448 T16449 nsubj we,measured
R12128 T16449 T16447 relcl measured,control
R12129 T16450 T16452 compound TNF,levels
R12130 T16451 T16452 compound mRNA,levels
R12131 T16452 T16449 dobj levels,measured
R12132 T16453 T16428 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15979 88-96 Protein denotes TNF mRNA
T15978 15-20 Protein denotes MyD88
T15977 6-9 Protein denotes TNF

testone

Id Subject Object Predicate Lexical cue
T14562 88-91 Protein denotes TNF
T14561 15-20 Protein denotes MyD88
T14560 6-9 Protein denotes TNF

test3

Id Subject Object Predicate Lexical cue
T14709 88-91 Protein denotes TNF
T14708 15-20 Protein denotes MyD88
T14707 6-9 Protein denotes TNF
T14651 88-91 Protein denotes TNF
T14650 15-20 Protein denotes MyD88
T14649 6-9 Protein denotes TNF