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PMC:3320587 / 44571-44679 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15357 99-107 VB denotes examined
T15356 94-98 VB denotes were
T15355 87-93 NN denotes levels
T15354 82-86 NN denotes mRNA
T15353 76-81 NN denotes NFAT5
T15352 72-75 CC denotes and
T15351 70-71 -RRB- denotes )
T15350 63-70 NN denotes CDC1551
T15349 62-63 -LRB- denotes (
T15348 58-61 NN denotes MTb
T15347 53-57 IN denotes with
T15346 44-52 VB denotes infected
T15345 39-43 RB denotes then
T15344 34-38 VB denotes were
T15343 28-33 NN denotes cells
T15342 22-27 NN denotes THP-1
T15341 12-21 JJ denotes knockdown
T15340 6-11 NN denotes MyD88
T15339 0-5 DT denotes These
R11233 T15343 T15339 arg1Of cells,These
R11234 T15343 T15340 arg1Of cells,MyD88
R11235 T15343 T15341 arg1Of cells,knockdown
R11236 T15343 T15342 arg1Of cells,THP-1
R11237 T15343 T15344 arg1Of cells,were
R11238 T15343 T15346 arg2Of cells,infected
R11239 T15346 T15344 arg2Of infected,were
R11240 T15346 T15345 arg1Of infected,then
R11241 T15346 T15347 arg1Of infected,with
R11242 T15346 T15352 arg1Of infected,and
R11243 T15348 T15347 arg2Of MTb,with
R11244 T15348 T15349 arg1Of MTb,(
R11245 T15350 T15349 arg2Of CDC1551,(
R11246 T15351 T15349 arg3Of ),(
R11247 T15355 T15353 arg1Of levels,NFAT5
R11248 T15355 T15354 arg1Of levels,mRNA
R11249 T15355 T15356 arg1Of levels,were
R11250 T15355 T15357 arg2Of levels,examined
R11251 T15357 T15352 arg2Of examined,and
R11252 T15357 T15356 arg2Of examined,were

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14922 76-81 Protein denotes NFAT5
T14921 6-11 Protein denotes MyD88

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15612 76-81 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T15622 6-11 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

GO-CC

Id Subject Object Predicate Lexical cue
T14981 28-33 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T14775 0-108 Sentence denotes These MyD88 knockdown THP-1 cells were then infected with MTb (CDC1551) and NFAT5 mRNA levels were examined.
T262 0-108 Sentence denotes These MyD88 knockdown THP-1 cells were then infected with MTb (CDC1551) and NFAT5 mRNA levels were examined.

simple1

Id Subject Object Predicate Lexical cue
T15002 76-81 Protein denotes NFAT5
T15001 6-11 Protein denotes MyD88

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16761 87-93 Transcription denotes levels
T16760 12-21 Negative_regulation denotes knockdown
T16702 76-81 Protein denotes NFAT5
T16701 6-11 Protein denotes MyD88
R12379 T16701 T16760 themeOf MyD88,knockdown
R12380 T16702 T16761 themeOf NFAT5,levels

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15837 12-21 Negative_regulation denotes knockdown
T15784 6-11 Protein denotes MyD88
T15785 76-81 Protein denotes NFAT5
R11614 T15784 T15837 themeOf MyD88,knockdown

DLUT931

Id Subject Object Predicate Lexical cue
T15670 76-81 Protein denotes NFAT5
T15669 6-11 Protein denotes MyD88
T15729 87-93 Transcription denotes levels
T15728 12-21 Negative_regulation denotes knockdown
R11515 T15669 T15728 themeOf MyD88,knockdown
R11516 T15670 T15729 themeOf NFAT5,levels

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16884 76-81 Protein denotes NFAT5
T16877 76-93 Protein denotes NFAT5 mRNA levels
T16867 6-11 Protein denotes MyD88
T16803 0-33 Entity denotes These MyD88 knockdown THP-1 cells
T16800 58-71 Protein denotes MTb (CDC1551)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16425 107-108 . denotes .
T16424 99-107 VBN denotes examined
T16423 94-98 VBD denotes were
T16422 87-93 NNS denotes levels
T16421 82-86 NNP denotes mRNA
T16420 76-81 NNP denotes NFAT5
T16419 72-75 CC denotes and
T16418 70-71 -RRB- denotes )
T16417 63-70 NNP denotes CDC1551
T16416 62-63 -LRB- denotes (
T16415 58-61 NNP denotes MTb
T16414 53-57 IN denotes with
T16413 44-52 VBN denotes infected
T16412 39-43 RB denotes then
T16411 34-38 VBD denotes were
T16410 28-33 NNS denotes cells
T16409 22-27 CD denotes THP-1
T16408 12-21 NN denotes knockdown
T16407 6-11 NNP denotes MyD88
T16406 0-5 DT denotes These
R12085 T16406 T16413 nsubjpass These,infected
R12086 T16407 T16408 compound MyD88,knockdown
R12087 T16408 T16413 nsubjpass knockdown,infected
R12088 T16409 T16410 nummod THP-1,cells
R12089 T16410 T16408 appos cells,knockdown
R12090 T16411 T16413 auxpass were,infected
R12091 T16412 T16413 advmod then,infected
R12092 T16413 T16413 ROOT infected,infected
R12093 T16414 T16413 prep with,infected
R12094 T16415 T16422 nmod MTb,levels
R12095 T16416 T16415 punct (,MTb
R12096 T16417 T16415 appos CDC1551,MTb
R12097 T16418 T16415 punct ),MTb
R12098 T16419 T16415 cc and,MTb
R12099 T16420 T16421 compound NFAT5,mRNA
R12100 T16421 T16415 conj mRNA,MTb
R12101 T16422 T16414 pobj levels,with
R12102 T16423 T16424 auxpass were,examined
R12103 T16424 T16413 conj examined,infected
R12104 T16425 T16413 punct .,infected

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15976 12-21 Negative_regulation denotes knockdown
T15975 76-86 Protein denotes NFAT5 mRNA
T15974 6-11 Protein denotes MyD88
R11712 T15974 T15976 themeOf MyD88,knockdown

testone

Id Subject Object Predicate Lexical cue
T14605 12-21 Negative_regulation denotes knockdown
T14559 76-81 Protein denotes NFAT5
T14558 6-11 Protein denotes MyD88
R10818 T14558 T14605 themeOf MyD88,knockdown
R10819 T14559 T14605 themeOf NFAT5,knockdown

test3

Id Subject Object Predicate Lexical cue
T14706 76-81 Protein denotes NFAT5
T14705 6-11 Protein denotes MyD88
T14648 76-81 Protein denotes NFAT5
T14647 6-11 Protein denotes MyD88