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PMC:3320587 / 43663-43849 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27473 184-185 -RRB- denotes )
T27472 180-184 NN denotes bars
T27471 175-179 JJ denotes open
T27470 174-175 -LRB- denotes (
T27469 168-173 NN denotes shRNA
T27468 160-167 NN denotes control
T27467 149-159 VB denotes expressing
T27466 143-148 NN denotes cells
T27465 140-142 TO denotes to
T27464 131-139 VB denotes compared
T27463 129-130 -RRB- denotes )
T27462 125-129 NN denotes bars
T27461 119-124 JJ denotes black
T27460 118-119 -LRB- denotes (
T27459 112-117 NN denotes shRNA
T27458 110-111 -RRB- denotes )
T27457 109-110 NN denotes D
T27456 108-109 -LRB- denotes (
T27455 102-107 NN denotes TRAF6
T27454 99-101 CC denotes or
T27453 97-98 -RRB- denotes )
T27452 96-97 NN denotes C
T27451 95-96 -LRB- denotes (
T27450 89-94 NN denotes IRAK1
T27449 82-88 CC denotes either
T27448 71-81 VB denotes expressing
T27447 65-70 NN denotes cells
T27446 52-64 JJ denotes MTb-infected
T27445 48-51 DT denotes the
T27444 45-47 IN denotes in
T27443 35-44 VB denotes inhibited
T27442 21-34 RB denotes significantly
T27441 17-20 VB denotes was
T27440 6-16 NN denotes expression
T27439 0-5 NN denotes NFAT5
R19962 T27440 T27439 arg1Of expression,NFAT5
R19963 T27440 T27441 arg1Of expression,was
R19964 T27440 T27443 arg2Of expression,inhibited
R19965 T27443 T27441 arg2Of inhibited,was
R19966 T27443 T27442 arg1Of inhibited,significantly
R19967 T27443 T27444 arg1Of inhibited,in
R19968 T27447 T27444 arg2Of cells,in
R19969 T27447 T27445 arg1Of cells,the
R19970 T27447 T27446 arg1Of cells,MTb-infected
R19971 T27447 T27448 arg1Of cells,expressing
R19972 T27448 T27464 arg1Of expressing,compared
R19973 T27450 T27449 arg1Of IRAK1,either
R19974 T27450 T27451 arg1Of IRAK1,(
R19975 T27450 T27454 arg1Of IRAK1,or
R19976 T27452 T27451 arg2Of C,(
R19977 T27453 T27451 arg3Of ),(
R19978 T27454 T27448 arg2Of or,expressing
R19979 T27457 T27456 arg2Of D,(
R19980 T27458 T27456 arg3Of ),(
R19981 T27459 T27454 arg2Of shRNA,or
R19982 T27459 T27455 arg1Of shRNA,TRAF6
R19983 T27459 T27456 arg1Of shRNA,(
R19984 T27459 T27460 arg1Of shRNA,(
R19985 T27462 T27460 arg2Of bars,(
R19986 T27462 T27461 arg1Of bars,black
R19987 T27463 T27460 arg3Of ),(
R19988 T27465 T27464 arg2Of to,compared
R19989 T27466 T27465 arg2Of cells,to
R19990 T27466 T27467 arg1Of cells,expressing
R19991 T27469 T27467 arg2Of shRNA,expressing
R19992 T27469 T27468 arg1Of shRNA,control
R19993 T27469 T27470 arg1Of shRNA,(
R19994 T27472 T27470 arg2Of bars,(
R19995 T27472 T27471 arg1Of bars,open
R19996 T27473 T27470 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T27069 168-173 Protein denotes shRNA
T27068 102-107 Protein denotes TRAF6
T27067 89-94 Protein denotes IRAK1
T27066 0-5 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T27522 0-5 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27532 102-107 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-CC

Id Subject Object Predicate Lexical cue
T27089 143-148 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27088 65-70 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T26969 0-186 Sentence denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D) shRNA (black bars) compared to cells expressing control shRNA (open bars).
T257 0-186 Sentence denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D) shRNA (black bars) compared to cells expressing control shRNA (open bars).

simple1

Id Subject Object Predicate Lexical cue
T27120 168-173 Protein denotes shRNA
T27119 102-107 Protein denotes TRAF6
T27118 89-94 Protein denotes IRAK1
T27117 0-5 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T28241 6-16 Gene_expression denotes expression
T28240 35-44 Negative_regulation denotes inhibited
T28239 149-159 Gene_expression denotes expressing
T28238 71-81 Gene_expression denotes expressing
T28213 168-173 Protein denotes shRNA
T28212 102-107 Protein denotes TRAF6
T28211 89-94 Protein denotes IRAK1
T28210 0-5 Protein denotes NFAT5
R20592 T28210 T28241 themeOf NFAT5,expression
R20593 T28211 T28238 themeOf IRAK1,expressing
R20594 T28212 T28238 themeOf TRAF6,expressing
R20595 T28213 T28239 themeOf shRNA,expressing
R20605 T28241 T28240 themeOf expression,inhibited

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T27657 168-173 Protein denotes shRNA
T27656 102-107 Protein denotes TRAF6
T27655 89-94 Protein denotes IRAK1
T27654 0-5 Protein denotes NFAT5
T27682 71-81 Gene_expression denotes expressing
T27681 6-16 Gene_expression denotes expression
T27680 149-159 Gene_expression denotes expressing
T27679 35-44 Negative_regulation denotes inhibited
R20103 T27654 T27681 themeOf NFAT5,expression
R20104 T27655 T27682 themeOf IRAK1,expressing
R20105 T27656 T27682 themeOf TRAF6,expressing
R20106 T27657 T27680 themeOf shRNA,expressing
R20117 T27681 T27679 themeOf expression,inhibited

DLUT931

Id Subject Object Predicate Lexical cue
T27559 168-173 Protein denotes shRNA
T27558 102-107 Protein denotes TRAF6
T27557 89-94 Protein denotes IRAK1
T27556 0-5 Protein denotes NFAT5
T27588 149-159 Gene_expression denotes expressing
T27587 112-117 Negative_regulation denotes shRNA
T27586 71-81 Gene_expression denotes expressing
T27585 35-44 Negative_regulation denotes inhibited
T27584 6-16 Gene_expression denotes expression
R20054 T27556 T27584 themeOf NFAT5,expression
R20055 T27557 T27586 themeOf IRAK1,expressing
R20056 T27558 T27587 themeOf TRAF6,shRNA
R20058 T27559 T27588 themeOf shRNA,expressing
R20072 T27584 T27585 themeOf expression,inhibited
R20057 T27558 T27586 themeOf TRAF6,expressing

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T28317 0-111 Negative_regulation denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)
T28315 0-16 Gene_expression denotes NFAT5 expression
T28304 102-107 Protein denotes TRAF6
T28282 140-148 Entity denotes to cells
T28273 0-5 Protein denotes NFAT5
T28270 168-173 Protein denotes shRNA
T28263 89-98 Protein denotes IRAK1 (C)
T28262 48-111 Protein denotes the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)
T28259 112-117 Protein denotes shRNA
R20614 T28273 T28315 themeOf NFAT5,NFAT5 expression
R20621 T28315 T28317 themeOf NFAT5 expression,NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T28149 185-186 . denotes .
T28148 184-185 -RRB- denotes )
T28147 180-184 NNS denotes bars
T28146 175-179 JJ denotes open
T28145 174-175 -LRB- denotes (
T28144 168-173 NNP denotes shRNA
T28143 160-167 NN denotes control
T28142 149-159 VBG denotes expressing
T28141 143-148 NNS denotes cells
T28140 140-142 TO denotes to
T28139 131-139 VBN denotes compared
T28138 129-130 -RRB- denotes )
T28137 125-129 NNS denotes bars
T28136 119-124 JJ denotes black
T28135 118-119 -LRB- denotes (
T28134 112-117 NNP denotes shRNA
T28133 110-111 -RRB- denotes )
T28132 109-110 NNP denotes D
T28131 108-109 -LRB- denotes (
T28130 102-107 CD denotes TRAF6
T28129 99-101 CC denotes or
T28128 97-98 -RRB- denotes )
T28127 96-97 NNP denotes C
T28126 95-96 -LRB- denotes (
T28125 89-94 NNP denotes IRAK1
T28124 82-88 CC denotes either
T28123 71-81 VBG denotes expressing
T28122 65-70 NNS denotes cells
T28121 52-64 JJ denotes MTb-infected
T28120 48-51 DT denotes the
T28119 45-47 IN denotes in
T28118 35-44 VBN denotes inhibited
T28117 21-34 RB denotes significantly
T28116 17-20 VBD denotes was
T28115 6-16 NN denotes expression
T28114 0-5 CD denotes NFAT5
R20501 T28114 T28115 nummod NFAT5,expression
R20502 T28115 T28118 nsubjpass expression,inhibited
R20503 T28116 T28118 auxpass was,inhibited
R20504 T28117 T28118 advmod significantly,inhibited
R20505 T28118 T28118 ROOT inhibited,inhibited
R20506 T28119 T28118 prep in,inhibited
R20507 T28120 T28122 det the,cells
R20508 T28121 T28122 amod MTb-infected,cells
R20509 T28122 T28119 pobj cells,in
R20510 T28123 T28122 acl expressing,cells
R20511 T28124 T28139 preconj either,compared
R20512 T28125 T28139 nsubj IRAK1,compared
R20513 T28126 T28125 punct (,IRAK1
R20514 T28127 T28125 appos C,IRAK1
R20515 T28128 T28125 punct ),IRAK1
R20516 T28129 T28125 cc or,IRAK1
R20517 T28130 T28125 conj TRAF6,IRAK1
R20518 T28131 T28134 punct (,shRNA
R20519 T28132 T28134 nmod D,shRNA
R20520 T28133 T28134 punct ),shRNA
R20521 T28134 T28134 ROOT shRNA,shRNA
R20522 T28135 T28137 punct (,bars
R20523 T28136 T28137 amod black,bars
R20524 T28137 T28134 appos bars,shRNA
R20525 T28138 T28134 punct ),shRNA
R20526 T28139 T28118 conj compared,inhibited
R20527 T28140 T28139 prep to,compared
R20528 T28141 T28140 pobj cells,to
R20529 T28142 T28141 acl expressing,cells
R20530 T28143 T28144 compound control,shRNA
R20531 T28144 T28142 dobj shRNA,expressing
R20532 T28145 T28144 punct (,shRNA
R20533 T28146 T28147 amod open,bars
R20534 T28147 T28144 appos bars,shRNA
R20535 T28148 T28144 punct ),shRNA
R20536 T28149 T28118 punct .,inhibited

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T27730 71-81 Gene_expression denotes expressing
T27729 71-81 Gene_expression denotes expressing
T27728 35-44 Negative_regulation denotes inhibited
T27727 6-16 Gene_expression denotes expression
T27726 102-107 Protein denotes TRAF6
T27725 89-94 Protein denotes IRAK1
T27724 0-5 Protein denotes NFAT5
R20142 T27724 T27727 themeOf NFAT5,expression
R20143 T27725 T27729 themeOf IRAK1,expressing
R20144 T27726 T27730 themeOf TRAF6,expressing
R20145 T27727 T27728 themeOf expression,inhibited

testone

Id Subject Object Predicate Lexical cue
T26878 71-81 Gene_expression denotes expressing
T26877 35-44 Negative_regulation denotes inhibited
T26876 6-16 Gene_expression denotes expression
T26861 168-173 Protein denotes shRNA
T26860 102-107 Protein denotes TRAF6
T26859 89-94 Protein denotes IRAK1
T26858 0-5 Protein denotes NFAT5
R19574 T26876 T26877 themeOf expression,inhibited
R19575 T26878 T26877 themeOf expressing,inhibited
R19562 T26858 T26876 themeOf NFAT5,expression
R19563 T26859 T26878 themeOf IRAK1,expressing
R19564 T26860 T26878 themeOf TRAF6,expressing
R19565 T26861 T26878 themeOf shRNA,expressing

test3

Id Subject Object Predicate Lexical cue
T26953 168-173 Protein denotes shRNA
T26952 102-107 Protein denotes TRAF6
T26951 89-94 Protein denotes IRAK1
T26950 71-81 Gene_expression denotes expressing
T26949 35-44 Negative_regulation denotes inhibited
T26948 6-16 Gene_expression denotes expression
T26947 0-5 Protein denotes NFAT5
T26906 168-173 Protein denotes shRNA
T26905 102-107 Protein denotes TRAF6
T26904 89-94 Protein denotes IRAK1
T26903 0-5 Protein denotes NFAT5
R19592 T26947 T26948 themeOf NFAT5,expression
R19593 T26948 T26949 themeOf expression,inhibited
R19594 T26950 T26949 causeOf expressing,inhibited
R19595 T26951 T26950 themeOf IRAK1,expressing
R19596 T26951 T26949 causeOf IRAK1,inhibited
R19597 T26952 T26950 themeOf TRAF6,expressing
R19598 T26952 T26949 causeOf TRAF6,inhibited
R19599 T26953 T26950 themeOf shRNA,expressing
R19600 T26953 T26949 causeOf shRNA,inhibited