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PMC:3320587 / 426-884 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T309 452-455 CC denotes and
T308 450-451 NN denotes B
T307 442-449 NN denotes subtype
T306 436-441 NN denotes HIV-1
T305 426-435 JJ denotes R5-tropic
T304 423-425 IN denotes of
T303 414-422 NN denotes promoter
T302 408-413 JJ denotes viral
T301 404-407 DT denotes the
T300 401-403 IN denotes in
T299 396-400 NN denotes site
T298 388-395 NN denotes binding
T297 382-387 NN denotes NFAT5
T296 375-381 JJ denotes intact
T295 372-374 DT denotes an
T294 367-371 IN denotes that
T293 363-366 CC denotes and
T292 361-362 -COMMA- denotes ,
T291 355-361 NN denotes ligand
T290 353-354 -RRB- denotes )
T289 350-353 NN denotes TLR
T288 349-350 -LRB- denotes (
T287 340-348 NN denotes receptor
T286 330-339 JJ denotes Toll-like
T285 328-329 DT denotes a
T284 325-327 VB denotes is
T283 319-324 WDT denotes which
T282 317-318 -COMMA- denotes ,
T281 314-317 NN denotes MTb
T280 311-313 IN denotes by
T279 303-310 VB denotes induced
T278 294-302 RB denotes strongly
T277 290-293 VB denotes are
T276 279-289 NN denotes expression
T275 271-278 NN denotes protein
T274 267-270 CC denotes and
T273 262-266 NN denotes gene
T272 256-261 NN denotes NFAT5
T271 251-255 IN denotes that
T270 246-250 VB denotes show
T269 243-245 PRP denotes We
T268 230-241 NN denotes macrophages
T267 218-229 JJ denotes co-infected
T266 215-217 IN denotes in
T265 203-214 NN denotes replication
T264 197-202 NN denotes HIV-1
T263 185-196 JJ denotes -stimulated
T262 184-185 -RRB- denotes )
T261 181-184 NN denotes MTb
T260 180-181 -LRB- denotes (
T259 167-179 NN denotes tuberculosis
T258 153-166 NN denotes Mycobacterium
T257 144-152 VB denotes inhibits
T256 142-143 -RRB- denotes )
T255 138-142 NN denotes RNAi
T254 137-138 -LRB- denotes (
T253 124-136 NN denotes interference
T252 120-123 NN denotes RNA
T251 117-119 IN denotes by
T250 115-116 -RRB- denotes )
T249 110-115 NN denotes NFAT5
T248 109-110 -LRB- denotes (
T247 107-108 CD denotes 5
T246 101-106 NN denotes cells
T245 99-100 NN denotes T
T244 89-98 VB denotes activated
T243 86-88 IN denotes of
T242 79-85 NN denotes factor
T241 71-78 JJ denotes nuclear
T240 64-70 NN denotes factor
T239 50-63 NN denotes transcription
T238 46-49 DT denotes the
T237 43-45 IN denotes of
T236 32-42 NN denotes expression
T235 28-31 DT denotes the
T234 25-27 IN denotes of
T233 15-24 NN denotes silencing
T232 10-14 IN denotes that
R61 T233 T234 arg1Of silencing,of
R62 T233 T257 arg1Of silencing,inhibits
R63 T236 T234 arg2Of expression,of
R64 T236 T235 arg1Of expression,the
R65 T236 T237 arg1Of expression,of
R66 T242 T237 arg2Of factor,of
R67 T242 T238 arg1Of factor,the
R68 T242 T239 arg1Of factor,transcription
R69 T242 T240 arg1Of factor,factor
R70 T242 T241 arg1Of factor,nuclear
R71 T242 T243 arg1Of factor,of
R72 T242 T251 arg1Of factor,by
R73 T247 T243 arg2Of 5,of
R74 T247 T244 arg2Of 5,activated
R75 T247 T245 arg1Of 5,T
R76 T247 T246 arg1Of 5,cells
R77 T247 T248 arg1Of 5,(
R78 T249 T248 arg2Of NFAT5,(
R79 T250 T248 arg3Of ),(
R80 T253 T251 arg2Of interference,by
R81 T253 T252 arg1Of interference,RNA
R82 T253 T254 arg1Of interference,(
R83 T255 T254 arg2Of RNAi,(
R84 T256 T254 arg3Of ),(
R86 T257 T232 arg1Of inhibits,that
R87 T261 T260 arg2Of MTb,(
R88 T262 T260 arg3Of ),(
R89 T265 T257 arg2Of replication,inhibits
R90 T265 T258 arg1Of replication,Mycobacterium
R91 T265 T259 arg1Of replication,tuberculosis
R92 T265 T260 arg1Of replication,(
R93 T265 T263 arg1Of replication,-stimulated
R94 T265 T264 arg1Of replication,HIV-1
R95 T265 T266 arg1Of replication,in
R96 T268 T266 arg2Of macrophages,in
R97 T268 T267 arg1Of macrophages,co-infected
R98 T269 T270 arg1Of We,show
R99 T273 T272 arg1Of gene,NFAT5
R100 T273 T274 arg1Of gene,and
R101 T274 T277 arg1Of and,are
R102 T274 T279 arg2Of and,induced
R103 T276 T274 arg2Of expression,and
R104 T276 T275 arg1Of expression,protein
R105 T279 T271 arg1Of induced,that
R106 T279 T277 arg2Of induced,are
R107 T279 T278 arg1Of induced,strongly
R108 T279 T293 arg1Of induced,and
R109 T281 T279 arg1Of MTb,induced
R110 T281 T280 arg2Of MTb,by
R111 T281 T282 arg1Of MTb,","
R112 T281 T283 arg1Of MTb,which
R113 T281 T284 arg1Of MTb,is
R114 T289 T288 arg2Of TLR,(
R115 T290 T288 arg3Of ),(
R116 T291 T284 arg2Of ligand,is
R117 T291 T285 arg1Of ligand,a
R118 T291 T286 arg1Of ligand,Toll-like
R119 T291 T287 arg1Of ligand,receptor
R120 T291 T288 arg1Of ligand,(
R121 T293 T270 arg2Of and,show
R122 T293 T292 arg1Of and,","
R123 T294 T293 arg2Of that,and
R124 T299 T295 arg1Of site,an
R125 T299 T296 arg1Of site,intact
R126 T299 T297 arg1Of site,NFAT5
R127 T299 T298 arg1Of site,binding
R128 T299 T300 arg1Of site,in
R131 T303 T300 arg2Of promoter,in
R132 T303 T301 arg1Of promoter,the
R133 T303 T302 arg1Of promoter,viral
R134 T303 T304 arg1Of promoter,of
R135 T308 T309 arg1Of B,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T86 71-108 Protein denotes nuclear factor of activated T cells 5
T87 110-115 Protein denotes NFAT5
T88 256-261 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T412 110-115 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T413 256-261 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T414 382-387 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T104 138-142 http://purl.obolibrary.org/obo/GO_0016246 denotes RNAi
T103 120-136 http://purl.obolibrary.org/obo/GO_0016246 denotes RNA interference
T99 50-63 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T117 355-361 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand
T118 388-395 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T119 101-106 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

ICD10

Id Subject Object Predicate Lexical cue
T116 167-179 http://purl.bioontology.org/ontology/ICD10/A15-A19.9 denotes tuberculosis

simple1

Id Subject Object Predicate Lexical cue
T169 71-108 Protein denotes nuclear factor of activated T cells 5
T170 110-115 Protein denotes NFAT5
T171 256-261 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T756 71-108 Protein denotes nuclear factor of activated T cells 5
T757 110-115 Protein denotes NFAT5
T758 256-261 Protein denotes NFAT5
T767 15-24 Negative_regulation denotes silencing
T768 32-42 Gene_expression denotes expression
T769 303-310 Positive_regulation denotes induced
T770 279-289 Gene_expression denotes expression
R582 T757 T768 themeOf NFAT5,expression
R583 T758 T769 themeOf NFAT5,induced
R584 T758 T770 themeOf NFAT5,expression
R591 T768 T767 themeOf expression,silencing
R592 T770 T769 themeOf expression,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T442 71-108 Protein denotes nuclear factor of activated T cells 5
T443 110-115 Protein denotes NFAT5
T444 256-261 Protein denotes NFAT5
T452 32-42 Gene_expression denotes expression
T453 15-24 Negative_regulation denotes silencing
T454 303-310 Positive_regulation denotes induced
T455 279-289 Gene_expression denotes expression
R508 T443 T452 themeOf NFAT5,expression
R509 T444 T454 themeOf NFAT5,induced
R511 T444 T455 themeOf NFAT5,expression
R517 T452 T453 themeOf expression,silencing
R518 T455 T454 themeOf expression,induced

DLUT931

Id Subject Object Predicate Lexical cue
T434 303-310 Positive_regulation denotes induced
T422 71-108 Protein denotes nuclear factor of activated T cells 5
T423 110-115 Protein denotes NFAT5
T424 256-261 Protein denotes NFAT5
T432 32-42 Gene_expression denotes expression
T433 279-289 Gene_expression denotes expression
R500 T422 T432 themeOf nuclear factor of activated T cells 5,expression
R501 T423 T432 themeOf NFAT5,expression
R502 T424 T433 themeOf NFAT5,expression
R503 T424 T434 themeOf NFAT5,induced
R507 T433 T434 themeOf expression,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T823 372-400 Binding denotes an intact NFAT5 binding site
T821 43-152 Negative_regulation denotes of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T816 271-289 Gene_expression denotes protein expression
T812 25-152 Gene_expression denotes of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T810 311-317 Protein denotes by MTb
T809 256-266 Protein denotes NFAT5 gene
T780 330-362 Entity denotes Toll-like receptor (TLR) ligand,
T782 404-449 Entity denotes the viral promoter of R5-tropic HIV-1 subtype
T786 218-241 Entity denotes co-infected macrophages
T788 382-387 Protein denotes NFAT5
T790 372-400 Entity denotes an intact NFAT5 binding site
T795 43-152 Protein denotes of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T796 330-354 Protein denotes Toll-like receptor (TLR)
T797 71-116 Protein denotes nuclear factor of activated T cells 5 (NFAT5)
T800 256-261 Protein denotes NFAT5
T803 110-115 Protein denotes NFAT5
T804 181-184 Protein denotes MTb
T806 271-278 Protein denotes protein
R603 T795 T812 themeOf of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R604 T795 T821 themeOf of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R605 T797 T821 causeOf nuclear factor of activated T cells 5 (NFAT5),of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R606 T806 T816 themeOf protein,protein expression
R600 T790 T823 themeOf an intact NFAT5 binding site,an intact NFAT5 binding site

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T647 450-451 NNP denotes B
T646 442-449 NN denotes subtype
T645 436-441 NN denotes HIV-1
T644 426-435 JJ denotes R5-tropic
T643 423-425 IN denotes of
T642 414-422 NN denotes promoter
T641 408-413 JJ denotes viral
T640 404-407 DT denotes the
T639 401-403 IN denotes in
T638 396-400 NN denotes site
T637 388-395 JJ denotes binding
T636 382-387 NNP denotes NFAT5
T635 375-381 JJ denotes intact
T634 372-374 DT denotes an
T633 367-371 IN denotes that
T632 363-366 CC denotes and
T631 361-362 , denotes ,
T630 355-361 NN denotes ligand
T629 353-354 -RRB- denotes )
T628 350-353 NNP denotes TLR
T627 349-350 -LRB- denotes (
T626 340-348 NN denotes receptor
T625 330-339 JJ denotes Toll-like
T624 328-329 DT denotes a
T623 325-327 VBZ denotes is
T622 319-324 WDT denotes which
T621 317-318 , denotes ,
T620 314-317 NNP denotes MTb
T619 311-313 IN denotes by
T618 303-310 VBN denotes induced
T617 294-302 RB denotes strongly
T616 290-293 VBP denotes are
T615 279-289 NN denotes expression
T614 271-278 NN denotes protein
T613 267-270 CC denotes and
T612 262-266 NN denotes gene
T611 256-261 CD denotes NFAT5
T610 251-255 IN denotes that
T609 246-250 VBP denotes show
T608 243-245 PRP denotes We
T607 241-242 . denotes .
T606 230-241 NNS denotes macrophages
T605 218-229 JJ denotes co-infected
T604 215-217 IN denotes in
T603 203-214 NN denotes replication
T602 197-202 NNP denotes HIV-1
T601 186-196 VBN denotes stimulated
T600 185-186 : denotes -
T599 184-185 -RRB- denotes )
T598 181-184 NNP denotes MTb
T597 180-181 -LRB- denotes (
T596 167-179 NN denotes tuberculosis
T595 153-166 NNP denotes Mycobacterium
T594 144-152 VBZ denotes inhibits
T593 142-143 -RRB- denotes )
T592 138-142 NNS denotes RNAi
T591 137-138 -LRB- denotes (
T590 124-136 NN denotes interference
T589 120-123 NNP denotes RNA
T588 117-119 IN denotes by
T569 10-14 IN denotes that
T570 15-24 VBG denotes silencing
T571 25-27 IN denotes of
T572 28-31 DT denotes the
T573 32-42 NN denotes expression
T574 43-45 IN denotes of
T575 46-49 DT denotes the
T576 50-63 NN denotes transcription
T577 64-70 NN denotes factor
T578 71-78 JJ denotes nuclear
T579 79-85 NN denotes factor
T580 86-88 IN denotes of
T581 89-98 VBN denotes activated
T582 99-100 NNP denotes T
T583 101-106 NNS denotes cells
T584 107-108 CD denotes 5
T585 109-110 -LRB- denotes (
T586 110-115 CD denotes NFAT5
T587 115-116 -RRB- denotes )
T648 452-455 CC denotes and
R322 T588 T570 prep by,silencing
R323 T589 T590 compound RNA,interference
R324 T590 T588 pobj interference,by
R325 T591 T592 punct (,RNAi
R326 T592 T570 appos RNAi,silencing
R327 T593 T570 punct ),silencing
R329 T595 T596 compound Mycobacterium,tuberculosis
R330 T596 T594 dobj tuberculosis,inhibits
R331 T597 T596 punct (,tuberculosis
R332 T598 T596 appos MTb,tuberculosis
R333 T599 T596 punct ),tuberculosis
R334 T600 T596 punct -,tuberculosis
R336 T602 T603 compound HIV-1,replication
R337 T603 T601 dobj replication,stimulated
R338 T604 T603 prep in,replication
R339 T605 T606 amod co-infected,macrophages
R340 T606 T604 pobj macrophages,in
R342 T608 T609 nsubj We,show
R343 T609 T609 ROOT show,show
R344 T610 T618 mark that,induced
R345 T611 T618 nsubjpass NFAT5,induced
R346 T612 T618 nsubjpass gene,induced
R347 T613 T612 cc and,gene
R348 T614 T615 compound protein,expression
R349 T615 T612 conj expression,gene
R350 T616 T618 auxpass are,induced
R351 T617 T618 advmod strongly,induced
R352 T618 T609 ccomp induced,show
R353 T619 T618 agent by,induced
R354 T620 T619 pobj MTb,by
R355 T621 T620 punct ",",MTb
R356 T622 T623 nsubj which,is
R357 T623 T620 relcl is,MTb
R358 T624 T626 det a,receptor
R359 T625 T626 amod Toll-like,receptor
R360 T626 T623 attr receptor,is
R361 T627 T628 punct (,TLR
R362 T628 T623 npadvmod TLR,is
R363 T629 T618 punct ),induced
R364 T630 T618 conj ligand,induced
R365 T631 T630 punct ",",ligand
R366 T632 T618 cc and,induced
R368 T634 T638 det an,site
R369 T635 T638 amod intact,site
R370 T636 T638 nmod NFAT5,site
R371 T637 T638 amod binding,site
R373 T639 T638 prep in,site
R374 T640 T642 det the,promoter
R375 T641 T642 amod viral,promoter
R376 T642 T639 pobj promoter,in
R377 T643 T642 prep of,promoter
R378 T644 T647 nmod R5-tropic,B
R379 T645 T647 nmod HIV-1,B
R380 T646 T647 compound subtype,B
R527 T569 T594 mark that,inhibits
R528 T570 T594 csubj silencing,inhibits
R529 T571 T570 prep of,silencing
R530 T572 T573 det the,expression
R531 T573 T571 pobj expression,of
R532 T574 T573 prep of,expression
R533 T575 T577 det the,factor
R534 T576 T577 compound transcription,factor
R535 T577 T574 pobj factor,of
R536 T578 T579 amod nuclear,factor
R537 T579 T573 conj factor,expression
R538 T580 T573 prep of,expression
R539 T581 T583 amod activated,cells
R540 T582 T583 compound T,cells
R541 T583 T580 pobj cells,of
R542 T584 T570 nummod 5,silencing
R543 T585 T586 punct (,NFAT5
R544 T586 T584 prep NFAT5,5
R545 T587 T584 punct ),5
R546 T648 T647 cc and,B

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T135 303-310 Positive_regulation denotes induced
T134 303-310 Positive_regulation denotes induced
T133 279-289 Gene_expression denotes expression
T132 382-400 Protein denotes NFAT5 binding site
T131 256-266 Protein denotes NFAT5 gene
T130 15-24 Negative_regulation denotes silencing
T129 15-24 Negative_regulation denotes silencing
T128 15-24 Negative_regulation denotes silencing
T127 32-42 Gene_expression denotes expression
T122 50-85 Protein denotes transcription factor nuclear factor
T123 89-108 Protein denotes activated T cells 5
T124 110-115 Protein denotes NFAT5
T125 32-42 Gene_expression denotes expression
T126 32-42 Gene_expression denotes expression
R22 T133 T135 themeOf expression,induced
R19 T127 T130 themeOf expression,silencing
R20 T131 T133 themeOf NFAT5 gene,expression
R21 T131 T134 themeOf NFAT5 gene,induced
R466 T122 T125 themeOf transcription factor nuclear factor,expression
R467 T123 T126 themeOf activated T cells 5,expression
R468 T124 T127 themeOf NFAT5,expression
R469 T125 T128 themeOf expression,silencing
R470 T126 T129 themeOf expression,silencing

testone

Id Subject Object Predicate Lexical cue
T24 303-310 Positive_regulation denotes induced
T23 15-24 Negative_regulation denotes silencing
T15 256-261 Protein denotes NFAT5
T14 110-115 Protein denotes NFAT5
T13 71-108 Protein denotes nuclear factor of activated T cells 5
R1 T14 T13 equivalentTo NFAT5,nuclear factor of activated T cells 5

test3

Id Subject Object Predicate Lexical cue
T45 110-115 Protein denotes NFAT5
T44 71-108 Protein denotes nuclear factor of activated T cells 5
T35 256-261 Protein denotes NFAT5
T34 110-115 Protein denotes NFAT5
T33 71-108 Protein denotes nuclear factor of activated T cells 5
T47 303-310 Positive_regulation denotes induced
T46 256-261 Protein denotes NFAT5
R11 T45 T44 equivalentTo NFAT5,nuclear factor of activated T cells 5
R12 T46 T47 themeOf NFAT5,induced