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2_test

Id Subject Object Predicate Lexical cue
22496647-21297424-98010783 536-538 21297424 denotes 28

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1541 540-541 -LRB- denotes [
T1540 539-540 CD denotes –
T1539 538-539 -RRB- denotes ]
T1538 536-538 CD denotes 28
T1537 535-536 -LRB- denotes [
T1536 533-534 -COMMA- denotes ,
T1535 532-533 -RRB- denotes ]
T1534 531-532 CD denotes 1
T1533 530-531 -LRB- denotes [
T1532 517-529 RB denotes respectively
T1531 515-516 -COMMA- denotes ,
T1530 510-515 NN denotes sites
T1529 502-509 NN denotes binding
T1528 496-501 NN denotes NF-κB
T1527 492-495 CD denotes one
T1526 488-491 CC denotes and
T1525 482-487 CD denotes three
T1524 477-481 VB denotes have
T1523 475-476 -COMMA- denotes ,
T1522 471-475 NNP denotes Asia
T1521 461-470 JJ denotes southeast
T1520 457-460 CC denotes and
T1519 450-456 NNP denotes Africa
T1518 438-449 JJ denotes sub-Saharan
T1517 426-437 JJ denotes TB-burdened
T1516 423-425 IN denotes in
T1515 404-422 RB denotes disproportionately
T1514 397-403 VB denotes spread
T1513 392-396 VB denotes have
T1512 386-391 WDT denotes which
T1511 384-385 -COMMA- denotes ,
T1510 383-384 NN denotes E
T1509 379-382 CC denotes and
T1508 377-378 NN denotes C
T1507 368-376 NN denotes subtypes
T1506 362-367 NN denotes HIV-1
T1505 360-361 -COMMA- denotes ,
T1504 352-360 NN denotes contrast
T1503 349-351 IN denotes By
T1502 344-347 NN denotes LTR
T1501 340-343 PRP-DOLLAR- denotes its
T1500 337-339 IN denotes in
T1499 330-336 NN denotes motifs
T1498 324-329 NN denotes NF-κB
T1497 317-323 JJ denotes tandem
T1496 313-316 CD denotes two
T1495 309-312 VB denotes has
T1494 307-308 -COMMA- denotes ,
T1493 298-307 NNP denotes Australia
T1492 294-297 CC denotes and
T1491 292-293 -COMMA- denotes ,
T1490 287-292 NNP denotes Japan
T1489 285-286 -COMMA- denotes ,
T1488 279-285 NNP denotes Europe
T1487 277-278 -COMMA- denotes ,
T1486 269-277 NNP denotes Americas
T1485 265-268 DT denotes the
T1484 262-264 IN denotes in
T1483 252-261 NN denotes infection
T1482 249-251 IN denotes of
T1481 243-248 NN denotes cause
T1480 235-242 JJ denotes primary
T1479 231-234 DT denotes the
T1478 227-230 CC denotes and
T1477 219-226 NN denotes subtype
T1476 213-218 JJ denotes viral
T1475 199-212 VB denotes characterized
T1474 192-198 RB denotes highly
T1473 187-191 RB denotes most
T1472 183-186 DT denotes the
T1471 181-182 -COMMA- denotes ,
T1470 180-181 NN denotes B
T1469 172-179 NN denotes subtype
T1468 166-171 NN denotes HIV-1
T1467 164-165 -COMMA- denotes ,
T1466 157-164 NN denotes example
T1465 153-156 IN denotes For
T1464 146-151 NN denotes sites
T1463 138-145 NN denotes binding
T1462 128-137 NN denotes activator
T1461 125-127 IN denotes of
T1460 112-124 NN denotes organization
T1459 108-111 CC denotes and
T1458 101-107 NN denotes number
T1457 97-100 DT denotes the
T1456 94-96 TO denotes to
T1455 86-93 NN denotes respect
T1454 81-85 IN denotes with
T1453 74-80 JJ denotes unique
T1452 71-73 VB denotes is
T1451 63-70 NN denotes subtype
T1450 58-62 DT denotes each
T1449 55-57 IN denotes of
T1448 51-54 NN denotes LTR
T1447 47-50 DT denotes the
T1446 43-46 CC denotes and
T1445 41-42 -COMMA- denotes ,
T1444 33-41 NN denotes subtypes
T1443 25-32 JJ denotes several
T1442 15-24 VB denotes comprises
T1441 9-14 NN denotes HIV-1
T1440 7-8 -COMMA- denotes ,
T1439 0-7 RB denotes Notably
T1543 543-544 -RRB- denotes ]
T1542 541-543 CD denotes 30
R1008 T1441 T1442 arg1Of HIV-1,comprises
R1009 T1442 T1446 arg1Of comprises,and
R1010 T1444 T1442 arg2Of subtypes,comprises
R1011 T1444 T1443 arg1Of subtypes,several
R1012 T1446 T1439 arg1Of and,Notably
R1013 T1446 T1440 arg1Of and,","
R1014 T1446 T1445 arg1Of and,","
R1015 T1448 T1447 arg1Of LTR,the
R1016 T1448 T1449 arg1Of LTR,of
R1017 T1448 T1452 arg1Of LTR,is
R1018 T1448 T1453 arg1Of LTR,unique
R1019 T1451 T1449 arg2Of subtype,of
R1020 T1451 T1450 arg1Of subtype,each
R1021 T1452 T1446 arg2Of is,and
R1022 T1453 T1452 arg2Of unique,is
R1023 T1453 T1454 arg1Of unique,with
R1024 T1455 T1454 arg2Of respect,with
R1025 T1455 T1456 arg1Of respect,to
R1026 T1458 T1459 arg1Of number,and
R1027 T1459 T1456 arg2Of and,to
R1028 T1459 T1457 arg1Of and,the
R1029 T1459 T1461 arg1Of and,of
R1030 T1460 T1459 arg2Of organization,and
R1031 T1464 T1461 arg2Of sites,of
R1032 T1464 T1462 arg1Of sites,activator
R1033 T1464 T1463 arg1Of sites,binding
R1034 T1466 T1465 arg2Of example,For
R1035 T1470 T1468 arg1Of B,HIV-1
R1036 T1470 T1469 arg1Of B,subtype
R1037 T1470 T1471 arg1Of B,","
R1038 T1470 T1478 arg1Of B,and
R1039 T1474 T1473 arg1Of highly,most
R1040 T1475 T1474 arg1Of characterized,highly
R1041 T1477 T1471 arg2Of subtype,","
R1042 T1477 T1472 arg1Of subtype,the
R1043 T1477 T1475 arg1Of subtype,characterized
R1044 T1477 T1476 arg1Of subtype,viral
R1045 T1478 T1495 arg1Of and,has
R1046 T1481 T1479 arg1Of cause,the
R1047 T1481 T1480 arg1Of cause,primary
R1048 T1481 T1482 arg1Of cause,of
R1049 T1481 T1484 arg1Of cause,in
R1050 T1481 T1487 arg1Of cause,","
R1051 T1483 T1482 arg2Of infection,of
R1052 T1486 T1484 arg2Of Americas,in
R1053 T1486 T1485 arg1Of Americas,the
R1054 T1487 T1478 arg2Of ",",and
R1055 T1488 T1489 arg1Of Europe,","
R1056 T1489 T1492 arg1Of ",",and
R1057 T1490 T1489 arg2Of Japan,","
R1058 T1492 T1487 arg2Of and,","
R1059 T1492 T1491 arg1Of and,","
R1060 T1493 T1492 arg2Of Australia,and
R1061 T1495 T1465 arg1Of has,For
R1062 T1495 T1467 arg1Of has,","
R1063 T1495 T1494 arg1Of has,","
R1064 T1499 T1495 arg2Of motifs,has
R1065 T1499 T1496 arg1Of motifs,two
R1066 T1499 T1497 arg1Of motifs,tandem
R1067 T1499 T1498 arg1Of motifs,NF-κB
R1068 T1499 T1500 arg1Of motifs,in
R1069 T1502 T1500 arg2Of LTR,in
R1070 T1502 T1501 arg1Of LTR,its
R1071 T1504 T1503 arg2Of contrast,By
R1072 T1508 T1509 arg1Of C,and
R1073 T1509 T1506 arg1Of and,HIV-1
R1074 T1509 T1507 arg1Of and,subtypes
R1075 T1509 T1511 arg1Of and,","
R1076 T1509 T1512 arg1Of and,which
R1077 T1509 T1513 arg1Of and,have
R1078 T1509 T1514 arg1Of and,spread
R1079 T1509 T1524 arg1Of and,have
R1080 T1510 T1509 arg2Of E,and
R1081 T1514 T1513 arg2Of spread,have
R1082 T1514 T1515 arg1Of spread,disproportionately
R1083 T1514 T1516 arg1Of spread,in
R1084 T1519 T1520 arg1Of Africa,and
R1085 T1520 T1516 arg2Of and,in
R1086 T1520 T1517 arg1Of and,TB-burdened
R1087 T1520 T1518 arg1Of and,sub-Saharan
R1088 T1522 T1520 arg2Of Asia,and
R1089 T1522 T1521 arg1Of Asia,southeast
R1090 T1524 T1503 arg1Of have,By
R1091 T1524 T1505 arg1Of have,","
R1092 T1524 T1523 arg1Of have,","
R1093 T1524 T1541 arg1Of have,[
R1094 T1525 T1526 arg1Of three,and
R1095 T1527 T1526 arg2Of one,and
R1096 T1530 T1524 arg2Of sites,have
R1097 T1530 T1525 arg1Of sites,three
R1098 T1530 T1527 arg1Of sites,one
R1099 T1530 T1528 arg1Of sites,NF-κB
R1100 T1530 T1529 arg1Of sites,binding
R1101 T1530 T1531 arg1Of sites,","
R1102 T1530 T1532 arg1Of sites,respectively
R1103 T1530 T1533 arg1Of sites,[
R1104 T1530 T1536 arg1Of sites,","
R1105 T1534 T1533 arg2Of 1,[
R1106 T1535 T1533 arg3Of ],[
R1107 T1538 T1537 arg2Of 28,[
R1108 T1539 T1537 arg3Of ],[
R1109 T1540 T1536 arg2Of –,","
R1110 T1540 T1537 arg1Of –,[
R1111 T1542 T1541 arg2Of 30,[
R1112 T1543 T1541 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T1024 128-145 http://purl.obolibrary.org/obo/GO_0051099 denotes activator binding

GO-MF

Id Subject Object Predicate Lexical cue
T1041 502-509 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T1040 138-145 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T1044 496-509 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding

sentences

Id Subject Object Predicate Lexical cue
T935 349-545 Sentence denotes By contrast, HIV-1 subtypes C and E, which have spread disproportionately in TB-burdened sub-Saharan Africa and southeast Asia, have three and one NF-κB binding sites, respectively [1], [28]–[30].
T934 153-348 Sentence denotes For example, HIV-1 subtype B, the most highly characterized viral subtype and the primary cause of infection in the Americas, Europe, Japan, and Australia, has two tandem NF-κB motifs in its LTR.
T933 0-152 Sentence denotes Notably, HIV-1 comprises several subtypes, and the LTR of each subtype is unique with respect to the number and organization of activator binding sites.
T25 0-152 Sentence denotes Notably, HIV-1 comprises several subtypes, and the LTR of each subtype is unique with respect to the number and organization of activator binding sites.
T26 153-348 Sentence denotes For example, HIV-1 subtype B, the most highly characterized viral subtype and the primary cause of infection in the Americas, Europe, Japan, and Australia, has two tandem NF-κB motifs in its LTR.
T27 349-545 Sentence denotes By contrast, HIV-1 subtypes C and E, which have spread disproportionately in TB-burdened sub-Saharan Africa and southeast Asia, have three and one NF-κB binding sites, respectively [1], [28]–[30].

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2783 496-539 Binding denotes NF-κB binding sites, respectively [1], [28]
T2771 125-151 Entity denotes of activator binding sites
T2770 510-515 Entity denotes sites
T2750 461-475 Entity denotes southeast Asia
T2742 496-539 Protein denotes NF-κB binding sites, respectively [1], [28]
T2734 146-151 Entity denotes sites
T2696 324-329 Protein denotes NF-κB
R2150 T2742 T2783 themeOf "NF-κB binding sites, respectively [1], [28]","NF-κB binding sites, respectively [1], [28]"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2382 544-545 . denotes .
T2381 543-544 NNP denotes ]
T2380 541-543 CD denotes 30
T2379 540-541 NNP denotes [
T2378 538-539 NNP denotes ]
T2377 536-538 CD denotes 28
T2376 535-536 NNP denotes [
T2375 533-534 , denotes ,
T2374 532-533 NNP denotes ]
T2373 531-532 CD denotes 1
T2372 530-531 NNP denotes [
T2371 517-529 RB denotes respectively
T2370 515-516 , denotes ,
T2369 510-515 NNS denotes sites
T2368 502-509 JJ denotes binding
T2367 496-501 JJ denotes NF-κB
T2366 492-495 CD denotes one
T2365 488-491 CC denotes and
T2364 482-487 CD denotes three
T2363 477-481 VBP denotes have
T2362 475-476 , denotes ,
T2361 471-475 NNP denotes Asia
T2360 461-470 JJ denotes southeast
T2359 457-460 CC denotes and
T2358 450-456 NNP denotes Africa
T2357 438-449 JJ denotes sub-Saharan
T2356 426-437 JJ denotes TB-burdened
T2355 423-425 IN denotes in
T2354 404-422 RB denotes disproportionately
T2353 397-403 VBN denotes spread
T2352 392-396 VBP denotes have
T2351 386-391 WDT denotes which
T2350 384-385 , denotes ,
T2349 383-384 NNP denotes E
T2348 379-382 CC denotes and
T2347 377-378 NNP denotes C
T2346 368-376 VBZ denotes subtypes
T2345 362-367 NNP denotes HIV-1
T2344 360-361 , denotes ,
T2343 352-360 NN denotes contrast
T2342 349-351 IN denotes By
T2341 347-348 . denotes .
T2340 344-347 NNP denotes LTR
T2339 340-343 PRP$ denotes its
T2338 337-339 IN denotes in
T2337 330-336 NNS denotes motifs
T2336 324-329 NN denotes NF-κB
T2335 317-323 NN denotes tandem
T2334 313-316 CD denotes two
T2333 309-312 VBZ denotes has
T2332 307-308 , denotes ,
T2331 298-307 NNP denotes Australia
T2330 294-297 CC denotes and
T2329 292-293 , denotes ,
T2328 287-292 NNP denotes Japan
T2327 285-286 , denotes ,
T2326 279-285 NNP denotes Europe
T2325 277-278 , denotes ,
T2324 269-277 NNPS denotes Americas
T2323 265-268 DT denotes the
T2322 262-264 IN denotes in
T2321 252-261 NN denotes infection
T2320 249-251 IN denotes of
T2319 243-248 NN denotes cause
T2318 235-242 JJ denotes primary
T2317 231-234 DT denotes the
T2316 227-230 CC denotes and
T2315 219-226 NN denotes subtype
T2314 213-218 JJ denotes viral
T2313 199-212 VBN denotes characterized
T2312 192-198 RB denotes highly
T2311 187-191 RBS denotes most
T2310 183-186 DT denotes the
T2309 181-182 , denotes ,
T2308 180-181 NNP denotes B
T2307 172-179 NN denotes subtype
T2306 166-171 JJ denotes HIV-1
T2305 164-165 , denotes ,
T2304 157-164 NN denotes example
T2303 153-156 IN denotes For
T2302 151-152 . denotes .
T2301 146-151 NNS denotes sites
T2300 138-145 JJ denotes binding
T2299 128-137 NN denotes activator
T2298 125-127 IN denotes of
T2297 112-124 NN denotes organization
T2296 108-111 CC denotes and
T2295 101-107 NN denotes number
T2294 97-100 DT denotes the
T2293 94-96 TO denotes to
T2292 86-93 NN denotes respect
T2291 81-85 IN denotes with
T2290 74-80 JJ denotes unique
T2289 71-73 VBZ denotes is
T2288 63-70 NN denotes subtype
T2287 58-62 DT denotes each
T2286 55-57 IN denotes of
T2285 51-54 NNP denotes LTR
T2284 47-50 DT denotes the
T2283 43-46 CC denotes and
T2282 41-42 , denotes ,
T2281 33-41 NNS denotes subtypes
T2280 25-32 JJ denotes several
T2279 15-24 VBZ denotes comprises
T2278 9-14 JJ denotes HIV-1
T2277 7-8 , denotes ,
T2276 0-7 RB denotes Notably
R1700 T2286 T2285 prep of,LTR
R1701 T2287 T2288 det each,subtype
R1703 T2288 T2286 pobj subtype,of
R1704 T2289 T2279 conj is,comprises
R1706 T2290 T2289 acomp unique,is
R1707 T2291 T2290 prep with,unique
R1708 T2292 T2291 pobj respect,with
R1710 T2293 T2292 prep to,respect
R1711 T2294 T2295 det the,number
R1712 T2295 T2293 pobj number,to
R1714 T2296 T2295 cc and,number
R1715 T2297 T2295 conj organization,number
R1716 T2298 T2295 prep of,number
R1718 T2299 T2301 amod activator,sites
R1719 T2300 T2301 amod binding,sites
R1720 T2301 T2298 pobj sites,of
R1721 T2302 T2289 punct .,is
R1722 T2303 T2333 prep For,has
R1724 T2304 T2303 pobj example,For
R1725 T2305 T2333 punct ",",has
R1727 T2306 T2308 compound HIV-1,B
R1728 T2307 T2308 compound subtype,B
R1729 T2308 T2333 nsubj B,has
R1731 T2309 T2308 punct ",",B
R1732 T2310 T2315 det the,subtype
R1733 T2311 T2313 advmod most,characterized
R1735 T2312 T2313 advmod highly,characterized
R1736 T2313 T2315 amod characterized,subtype
R1737 T2314 T2315 amod viral,subtype
R1739 T2315 T2308 appos subtype,B
R1740 T2316 T2315 cc and,subtype
R1741 T2317 T2319 det the,cause
R1742 T2318 T2319 amod primary,cause
R1744 T2319 T2315 conj cause,subtype
R1745 T2320 T2319 prep of,cause
R1746 T2321 T2320 pobj infection,of
R1748 T2322 T2321 prep in,infection
R1750 T2323 T2324 det the,Americas
R1752 T2324 T2322 pobj Americas,in
R1753 T2325 T2324 punct ",",Americas
R1755 T2326 T2324 conj Europe,Americas
R1756 T2327 T2326 punct ",",Europe
R1757 T2328 T2326 conj Japan,Europe
R1759 T2329 T2328 punct ",",Japan
R1760 T2330 T2328 cc and,Japan
R1761 T2331 T2328 conj Australia,Japan
R1763 T2332 T2333 punct ",",has
R1764 T2333 T2333 ROOT has,has
R1766 T2334 T2337 nummod two,motifs
R1767 T2335 T2337 nmod tandem,motifs
R1768 T2336 T2337 compound NF-κB,motifs
R1769 T2337 T2333 dobj motifs,has
R1770 T2338 T2333 prep in,has
R1772 T2339 T2340 poss its,LTR
R1773 T2340 T2338 pobj LTR,in
R1774 T2341 T2333 punct .,has
R1776 T2342 T2346 prep By,subtypes
R1777 T2343 T2342 pobj contrast,By
R1778 T2344 T2346 punct ",",subtypes
R1780 T2345 T2346 nsubj HIV-1,subtypes
R1781 T2346 T2346 ROOT subtypes,subtypes
R1782 T2347 T2346 dobj C,subtypes
R1784 T2348 T2347 cc and,C
R1785 T2349 T2347 conj E,C
R1787 T2350 T2347 punct ",",C
R1788 T2351 T2353 nsubj which,spread
R1789 T2352 T2353 aux have,spread
R1791 T2353 T2347 relcl spread,C
R1792 T2354 T2353 advmod disproportionately,spread
R1793 T2355 T2353 prep in,spread
R1795 T2356 T2358 amod TB-burdened,Africa
R1796 T2357 T2358 compound sub-Saharan,Africa
R1797 T2358 T2355 pobj Africa,in
R1798 T2359 T2358 cc and,Africa
R1800 T2360 T2361 amod southeast,Asia
R1801 T2361 T2358 conj Asia,Africa
R1802 T2362 T2363 punct ",",have
R1804 T2363 T2346 conj have,subtypes
R1805 T2364 T2369 nummod three,sites
R1806 T2365 T2364 cc and,three
R1808 T2366 T2364 conj one,three
R1811 T2367 T2369 amod NF-κB,sites
R1813 T2368 T2369 amod binding,sites
R1814 T2369 T2363 dobj sites,have
R1815 T2370 T2369 punct ",",sites
R1817 T2371 T2374 advmod respectively,]
R1818 T2372 T2374 nmod [,]
R1819 T2373 T2374 nummod 1,]
R1820 T2374 T2381 nmod ],]
R1821 T2375 T2374 punct ",",]
R1823 T2376 T2378 compound [,]
R1824 T2377 T2378 compound 28,]
R1825 T2378 T2374 appos ],]
R1826 T2379 T2374 appos [,]
R1828 T2380 T2381 nummod 30,]
R1830 T2381 T2363 npadvmod ],have
R1831 T2382 T2363 punct .,have
R1925 T2276 T2279 advmod Notably,comprises
R1929 T2277 T2279 punct ",",comprises
R1933 T2278 T2279 nsubj HIV-1,comprises
R1937 T2279 T2279 ROOT comprises,comprises
R1941 T2280 T2281 amod several,subtypes
R1945 T2281 T2279 dobj subtypes,comprises
R1947 T2282 T2281 punct ",",subtypes
R1950 T2283 T2281 cc and,subtypes
R1954 T2284 T2285 det the,LTR
R1958 T2285 T2289 nsubj LTR,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1903 496-501 Protein denotes NF-κB
T1902 309-312 Binding denotes has
T1901 317-336 Protein denotes tandem NF-κB motifs
R1403 T1901 T1902 themeOf tandem NF-κB motifs,has