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PMC:3320587 / 42064-43992 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27509 1926-1927 -RRB- denotes )
T27508 1922-1926 CD denotes 0.01
T27507 1921-1922 SYM denotes <
T27506 1920-1921 NN denotes p
T27505 1918-1919 -COMMA- denotes ,
T27504 1916-1918 SYM denotes **
T27503 1914-1915 -COLON- denotes ;
T27502 1910-1914 CD denotes 0.05
T27501 1909-1910 SYM denotes <
T27500 1908-1909 NN denotes p
T27499 1906-1907 -COMMA- denotes ,
T27498 1905-1906 SYM denotes *
T27497 1904-1905 -LRB- denotes (
T27496 1894-1903 NN denotes controls.
T27495 1891-1893 IN denotes as
T27494 1882-1890 VB denotes measured
T27493 1877-1881 VB denotes were
T27492 1875-1876 -COMMA- denotes ,
T27491 1865-1875 NN denotes activation
T27490 1861-1864 NN denotes PRR
T27489 1858-1860 IN denotes by
T27488 1850-1857 VB denotes induced
T27487 1847-1849 VB denotes be
T27486 1844-1846 TO denotes to
T27485 1838-1843 NN denotes TRAF6
T27484 1834-1837 CC denotes and
T27483 1828-1833 NN denotes IRAK1
T27482 1820-1827 VB denotes require
T27481 1814-1819 WDT denotes which
T27480 1811-1813 IN denotes of
T27479 1806-1810 DT denotes both
T27478 1804-1805 -COMMA- denotes ,
T27477 1799-1804 NN denotes mRNAs
T27476 1794-1798 NN denotes CD86
T27475 1790-1793 CC denotes and
T27474 1786-1789 NN denotes TNF
T27473 1783-1784 -RRB- denotes )
T27472 1779-1783 NN denotes bars
T27471 1774-1778 JJ denotes open
T27470 1773-1774 -LRB- denotes (
T27469 1767-1772 NN denotes shRNA
T27468 1759-1766 NN denotes control
T27467 1748-1758 VB denotes expressing
T27466 1742-1747 NN denotes cells
T27465 1739-1741 TO denotes to
T27464 1730-1738 VB denotes compared
T27463 1728-1729 -RRB- denotes )
T27462 1724-1728 NN denotes bars
T27461 1718-1723 JJ denotes black
T27460 1717-1718 -LRB- denotes (
T27459 1711-1716 NN denotes shRNA
T27458 1709-1710 -RRB- denotes )
T27457 1708-1709 NN denotes D
T27456 1707-1708 -LRB- denotes (
T27455 1701-1706 NN denotes TRAF6
T27454 1698-1700 CC denotes or
T27453 1696-1697 -RRB- denotes )
T27452 1695-1696 NN denotes C
T27451 1694-1695 -LRB- denotes (
T27450 1688-1693 NN denotes IRAK1
T27449 1681-1687 CC denotes either
T27448 1670-1680 VB denotes expressing
T27447 1664-1669 NN denotes cells
T27446 1651-1663 JJ denotes MTb-infected
T27445 1647-1650 DT denotes the
T27444 1644-1646 IN denotes in
T27443 1634-1643 VB denotes inhibited
T27442 1620-1633 RB denotes significantly
T27441 1616-1619 VB denotes was
T27440 1605-1615 NN denotes expression
T27439 1599-1604 NN denotes NFAT5
T27438 1589-1597 VB denotes analyzed
T27437 1585-1588 VB denotes was
T27436 1581-1584 NN denotes RNA
T27435 1577-1580 CC denotes and
T27434 1575-1576 -COMMA- denotes ,
T27433 1571-1575 NN denotes 37°C
T27432 1568-1570 IN denotes at
T27431 1562-1567 NN denotes hours
T27430 1559-1561 CD denotes 16
T27429 1555-1558 IN denotes for
T27428 1544-1554 JJ denotes uninfected
T27427 1539-1543 VB denotes left
T27426 1536-1538 CC denotes or
T27425 1528-1535 NN denotes CDC1551
T27424 1521-1527 NN denotes strain
T27423 1517-1520 NN denotes MTb
T27422 1512-1516 IN denotes with
T27421 1503-1511 VB denotes infected
T27420 1498-1502 VB denotes were
T27419 1492-1497 NN denotes Cells
T27418 1488-1490 NN denotes 7B
T27417 1485-1487 IN denotes in
T27416 1475-1484 VB denotes described
T27415 1472-1474 IN denotes as
T27414 1467-1471 VB denotes used
T27413 1462-1466 VB denotes were
T27412 1456-1461 NN denotes shRNA
T27411 1448-1455 NN denotes control
T27410 1437-1447 VB denotes expressing
T27409 1431-1436 NN denotes cells
T27408 1425-1430 NN denotes THP-1
T27407 1416-1424 NN denotes Methods.
T27406 1412-1415 CC denotes and
T27405 1402-1411 NNP denotes Materials
T27404 1399-1401 IN denotes in
T27403 1389-1398 VB denotes described
T27402 1386-1388 IN denotes as
T27401 1374-1385 VB denotes constructed
T27400 1369-1373 VB denotes were
T27399 1363-1368 NN denotes shRNA
T27398 1348-1362 JJ denotes TRAF6-specific
T27397 1345-1347 CC denotes or
T27396 1338-1344 NN denotes IRAK1-
T27395 1315-1337 JJ denotes lentivirally-delivered
T27394 1307-1314 VB denotes express
T27393 1292-1306 RB denotes constitutively
T27392 1287-1291 WDT denotes that
T27391 1281-1286 NN denotes cells
T27390 1275-1280 NN denotes THP-1
T27389 1264-1273 NN denotes monocytes
T27388 1258-1263 JJ denotes human
T27387 1255-1257 IN denotes in
T27386 1244-1254 NN denotes expression
T27385 1239-1243 NN denotes gene
T27384 1233-1238 NN denotes NFAT5
T27383 1230-1232 IN denotes of
T27382 1220-1229 NN denotes induction
T27381 1216-1219 NN denotes MTb
T27380 1212-1215 IN denotes for
T27379 1203-1211 VB denotes required
T27378 1199-1202 VB denotes are
T27377 1193-1198 NN denotes TRAF6
T27376 1189-1192 CC denotes and
T27375 1183-1188 NN denotes IRAK1
T27374 1181-1182 -RRB- denotes )
T27373 1180-1181 NN denotes D
T27372 1178-1179 -COMMA- denotes ,
T27371 1177-1178 NN denotes C
T27370 1176-1177 -LRB- denotes (
T27369 1166-1175 NN denotes controls.
T27368 1163-1165 IN denotes as
T27367 1154-1162 VB denotes measured
T27366 1149-1153 VB denotes were
T27365 1147-1148 -COMMA- denotes ,
T27364 1138-1147 NN denotes infection
T27363 1134-1137 NN denotes MTb
T27362 1127-1133 IN denotes during
T27361 1125-1126 -COMMA- denotes ,
T27360 1113-1125 RB denotes respectively
T27359 1111-1112 -COMMA- denotes ,
T27358 1099-1111 JJ denotes -independent
T27357 1095-1098 CC denotes and
T27356 1079-1094 JJ denotes MyD88-dependent
T27355 1075-1078 VB denotes are
T27354 1069-1074 WDT denotes which
T27353 1066-1068 IN denotes of
T27352 1055-1065 NN denotes expression
T27351 1051-1054 DT denotes the
T27215 285-289 NN denotes mRNA
T27214 279-284 NN denotes NFAT5
T27213 269-277 VB denotes measured
T27212 264-268 VB denotes were
T27211 257-263 NN denotes levels
T27210 252-256 NN denotes mRNA
T27209 246-251 NN denotes NFAT5
T27208 244-245 -COMMA- denotes ,
T27207 239-244 NN denotes hours
T27206 236-238 CD denotes 16
T27205 230-235 IN denotes After
T27204 219-228 JJ denotes untreated
T27203 214-218 VB denotes left
T27202 211-213 CC denotes or
T27201 209-210 -COMMA- denotes ,
T27200 208-209 -RRB- denotes )
T27199 195-208 NN denotes cells∶bacilli
T27198 191-194 CD denotes 1∶1
T27197 190-191 -LRB- denotes (
T27196 182-189 NN denotes CDC1551
T27195 175-181 NN denotes strain
T27194 171-174 NN denotes MTb
T27193 166-170 IN denotes with
T27192 157-165 VB denotes infected
T27191 155-156 -COMMA- denotes ,
T27190 154-155 -RRB- denotes )
T27189 149-154 NN denotes µg/ml
T27188 147-148 CD denotes 5
T27187 146-147 -LRB- denotes (
T27186 138-145 NN denotes Pam3Cys
T27185 131-137 NN denotes ligand
T27184 117-130 JJ denotes TLR2-specific
T27183 113-116 DT denotes the
T27182 108-112 IN denotes with
T27181 98-107 VB denotes incubated
T27180 93-97 VB denotes were
T27179 87-92 NN denotes cells
T27178 81-86 NN denotes THP-1
T27177 70-79 NN denotes monocytes
T27176 67-69 IN denotes in
T27175 57-66 NN denotes synthesis
T27174 52-56 NN denotes mRNA
T27173 46-51 NN denotes NFAT5
T27172 37-45 VB denotes enhances
T27171 23-36 RB denotes significantly
T27170 18-22 NN denotes TLR2
T27169 15-17 IN denotes of
T27168 4-14 NN denotes Engagement
T27167 2-3 -RRB- denotes )
T27166 1-2 NN denotes A
T27165 0-1 -LRB- denotes (
T27350 1049-1050 -COMMA- denotes ,
T27349 1044-1049 NN denotes mRNAs
T27348 1039-1043 NN denotes CD86
T27347 1035-1038 CC denotes and
T27346 1031-1034 NN denotes TNF
T27345 1020-1029 NN denotes infection
T27344 1016-1019 NN denotes MTb
T27343 1013-1015 IN denotes of
T27342 1004-1012 NN denotes presence
T27341 1001-1003 CC denotes or
T27340 993-1000 NN denotes absence
T27339 989-992 DT denotes the
T27338 987-988 -COMMA- denotes ,
T27337 983-987 CC denotes both
T27336 980-982 IN denotes in
T27335 978-979 -RRB- denotes )
T27334 974-978 NN denotes bars
T27333 969-973 JJ denotes open
T27332 968-969 -LRB- denotes (
T27331 962-967 NN denotes shRNA
T27330 954-961 NN denotes control
T27329 949-953 IN denotes with
T27328 938-948 VB denotes transduced
T27327 932-937 NN denotes cells
T27326 928-931 DT denotes the
T27325 923-927 IN denotes with
T27324 914-922 VB denotes compared
T27323 912-913 -RRB- denotes )
T27322 908-912 NN denotes bars
T27321 902-907 JJ denotes black
T27320 901-902 -LRB- denotes (
T27319 895-900 NN denotes shRNA
T27318 880-894 JJ denotes MyD88-specific
T27317 875-879 IN denotes with
T27316 864-874 VB denotes transduced
T27315 858-863 NN denotes cells
T27314 854-857 DT denotes the
T27313 851-853 IN denotes in
T27312 841-850 VB denotes inhibited
T27311 827-840 RB denotes significantly
T27310 822-826 VB denotes were
T27309 815-821 NN denotes levels
T27308 810-814 NN denotes mRNA
T27307 804-809 NN denotes NFAT5
T27306 794-802 VB denotes analyzed
T27305 790-793 VB denotes was
T27304 786-789 NN denotes RNA
T27303 782-785 CC denotes and
T27302 780-781 -COMMA- denotes ,
T27301 776-780 NN denotes 37°C
T27300 773-775 IN denotes at
T27299 767-772 NN denotes hours
T27298 764-766 CD denotes 16
T27297 760-763 IN denotes for
T27296 749-759 JJ denotes uninfected
T27295 744-748 VB denotes left
T27294 741-743 CC denotes or
T27293 739-740 -RRB- denotes )
T27292 726-739 NN denotes cells∶bacilli
T27291 722-725 CD denotes 1∶1
T27290 721-722 -LRB- denotes (
T27289 713-720 NN denotes CDC1551
T27288 706-712 NN denotes strain
T27287 702-705 NN denotes MTb
T27286 697-701 IN denotes with
T27285 688-696 VB denotes infected
T27284 683-687 VB denotes were
T27283 677-682 NNP denotes Cells
T27282 668-676 NNP denotes Methods.
T27281 664-667 CC denotes and
T27280 654-663 NNP denotes Materials
T27279 651-653 IN denotes in
T27278 641-650 VB denotes described
T27277 638-640 IN denotes as
T27276 626-637 VB denotes constructed
T27275 621-625 VB denotes were
T27274 617-620 NN denotes GFP
T27273 607-616 VB denotes targeting
T27272 601-606 NN denotes shRNA
T27271 593-600 NN denotes control
T27270 590-592 CC denotes or
T27269 584-589 NN denotes MyD88
T27268 574-583 VB denotes targeting
T27267 568-573 NN denotes shRNA
T27266 545-567 JJ denotes lentivirally-delivered
T27265 537-544 VB denotes express
T27264 522-536 RB denotes constitutively
T27263 517-521 WDT denotes that
T27262 511-516 NN denotes cells
T27261 505-510 NN denotes THP-1
T27260 485-494 NN denotes in human
T27259 479-484 JJ denotes ssion
T27258 477-479 IN denotes re
T27257 467-477 NN denotes 5 gene exp
T27256 463-467 NN denotes NFAT
T27255 457-462 NN denotes on of
T27254 455-457 IN denotes ti
T27253 446-455 NN denotes MTb induc
T27252 442-445 NN denotes for
T27251 438-441 IN denotes ant
T27250 429-438 JJ denotes is import
T27249 426-428 VB denotes 88
T27248 421-426 NN denotes ) MyD
T27247 420-421 -RRB- denotes B
T27246 419-420 NN denotes (
T27245 417-418 -LRB- denotes .
T27244 416-417 -RRB- denotes )
T27243 412-416 CD denotes 0.01
T27242 411-412 SYM denotes <
T27241 410-411 NN denotes p
T27240 408-409 -COMMA- denotes ,
T27239 406-408 SYM denotes **
T27238 405-406 -LRB- denotes (
T27237 401-404 NN denotes MTb
T27236 396-400 IN denotes with
T27235 387-395 VB denotes infected
T27234 384-386 CC denotes or
T27233 382-383 -RRB- denotes )
T27232 378-382 CD denotes 0.05
T27231 377-378 SYM denotes <
T27230 376-377 NN denotes p
T27229 374-375 -COMMA- denotes ,
T27228 373-374 SYM denotes *
T27227 372-373 -LRB- denotes (
T27226 364-371 NN denotes Pam3Cys
T27225 359-363 IN denotes with
T27224 349-358 VB denotes incubated
T27223 344-348 VB denotes were
T27222 338-343 NN denotes cells
T27221 334-337 DT denotes the
T27220 329-333 WRB denotes when
T27219 319-328 VB denotes increased
T27218 305-318 RB denotes significantly
T27217 301-304 VB denotes was
T27216 290-300 NN denotes expression
R19675 T27166 T27165 arg2Of A,(
R19676 T27167 T27165 arg3Of ),(
R19677 T27168 T27165 arg1Of Engagement,(
R19678 T27168 T27169 arg1Of Engagement,of
R19679 T27168 T27172 arg1Of Engagement,enhances
R19680 T27170 T27169 arg2Of TLR2,of
R19681 T27172 T27171 arg1Of enhances,significantly
R19682 T27174 T27173 arg1Of mRNA,NFAT5
R19683 T27175 T27172 arg2Of synthesis,enhances
R19684 T27175 T27174 arg1Of synthesis,mRNA
R19685 T27175 T27176 arg1Of synthesis,in
R19686 T27177 T27176 arg2Of monocytes,in
R19687 T27179 T27178 arg1Of cells,THP-1
R19688 T27179 T27180 arg1Of cells,were
R19689 T27179 T27181 arg2Of cells,incubated
R19690 T27181 T27180 arg2Of incubated,were
R19691 T27181 T27182 arg1Of incubated,with
R19692 T27186 T27183 arg1Of Pam3Cys,the
R19693 T27186 T27184 arg1Of Pam3Cys,TLR2-specific
R19694 T27186 T27185 arg1Of Pam3Cys,ligand
R19695 T27186 T27187 arg1Of Pam3Cys,(
R19696 T27186 T27191 arg1Of Pam3Cys,","
R19697 T27186 T27192 arg2Of Pam3Cys,infected
R19698 T27186 T27202 arg1Of Pam3Cys,or
R19699 T27186 T27203 arg2Of Pam3Cys,left
R19700 T27186 T27204 arg1Of Pam3Cys,untreated
R19701 T27189 T27187 arg2Of µg/ml,(
R19702 T27189 T27188 arg1Of µg/ml,5
R19703 T27190 T27187 arg3Of ),(
R19704 T27192 T27193 arg1Of infected,with
R19705 T27196 T27193 arg2Of CDC1551,with
R19706 T27196 T27194 arg1Of CDC1551,MTb
R19707 T27196 T27195 arg1Of CDC1551,strain
R19708 T27196 T27197 arg1Of CDC1551,(
R19709 T27199 T27197 arg2Of cells∶bacilli,(
R19710 T27199 T27198 arg1Of cells∶bacilli,1∶1
R19711 T27200 T27197 arg3Of ),(
R19712 T27202 T27201 arg1Of or,","
R19713 T27204 T27182 arg2Of untreated,with
R19714 T27207 T27205 arg2Of hours,After
R19715 T27207 T27206 arg1Of hours,16
R19716 T27211 T27209 arg1Of levels,NFAT5
R19717 T27211 T27210 arg1Of levels,mRNA
R19718 T27211 T27212 arg1Of levels,were
R19719 T27211 T27213 arg2Of levels,measured
R19720 T27213 T27205 arg1Of measured,After
R19721 T27213 T27208 arg1Of measured,","
R19722 T27213 T27212 arg2Of measured,were
R19723 T27216 T27214 arg1Of expression,NFAT5
R19724 T27216 T27215 arg1Of expression,mRNA
R19725 T27216 T27217 arg1Of expression,was
R19726 T27216 T27219 arg2Of expression,increased
R19727 T27219 T27217 arg2Of increased,was
R19728 T27219 T27218 arg1Of increased,significantly
R19729 T27219 T27220 arg1Of increased,when
R19730 T27222 T27221 arg1Of cells,the
R19731 T27222 T27223 arg1Of cells,were
R19732 T27222 T27224 arg2Of cells,incubated
R19733 T27222 T27235 arg2Of cells,infected
R19734 T27224 T27225 arg1Of incubated,with
R19735 T27224 T27234 arg1Of incubated,or
R19736 T27226 T27225 arg2Of Pam3Cys,with
R19737 T27226 T27227 arg1Of Pam3Cys,(
R19738 T27228 T27229 arg1Of *,","
R19739 T27230 T27229 arg2Of p,","
R19740 T27230 T27231 arg1Of p,<
R19741 T27232 T27227 arg2Of 0.05,(
R19742 T27232 T27228 arg1Of 0.05,*
R19743 T27233 T27227 arg3Of ),(
R19744 T27234 T27220 arg2Of or,when
R19745 T27234 T27223 arg2Of or,were
R19746 T27235 T27234 arg2Of infected,or
R19747 T27235 T27236 arg1Of infected,with
R19748 T27237 T27236 arg2Of MTb,with
R19749 T27237 T27238 arg1Of MTb,(
R19750 T27237 T27245 arg1Of MTb,.
R19751 T27237 T27249 modOf MTb,88
R19752 T27239 T27238 arg2Of **,(
R19753 T27239 T27240 arg1Of **,","
R19754 T27241 T27240 arg2Of p,","
R19755 T27241 T27242 arg1Of p,<
R19756 T27241 T27243 arg1Of p,0.01
R19757 T27244 T27238 arg3Of ),(
R19758 T27246 T27245 arg2Of (,.
R19759 T27247 T27245 arg3Of B,.
R19760 T27248 T27249 arg1Of ) MyD,88
R19761 T27248 T27250 arg1Of ) MyD,is import
R19762 T27250 T27249 arg2Of is import,88
R19763 T27250 T27251 arg1Of is import,ant
R19764 T27253 T27251 arg2Of MTb induc,ant
R19765 T27253 T27252 arg1Of MTb induc,for
R19766 T27253 T27254 arg1Of MTb induc,ti
R19767 T27253 T27258 arg1Of MTb induc,re
R19768 T27257 T27254 arg2Of 5 gene exp,ti
R19769 T27257 T27255 arg1Of 5 gene exp,on of
R19770 T27257 T27256 arg1Of 5 gene exp,NFAT
R19771 T27260 T27258 arg2Of in human ,re
R19772 T27260 T27259 arg1Of in human ,ssion
R19773 T27262 T27261 arg1Of cells,THP-1
R19774 T27262 T27263 arg1Of cells,that
R19775 T27262 T27265 arg1Of cells,express
R19776 T27262 T27275 arg1Of cells,were
R19777 T27262 T27276 arg2Of cells,constructed
R19778 T27265 T27264 arg1Of express,constitutively
R19779 T27267 T27265 arg2Of shRNA,express
R19780 T27267 T27266 arg1Of shRNA,lentivirally-delivered
R19781 T27267 T27268 arg1Of shRNA,targeting
R19782 T27269 T27270 arg1Of MyD88,or
R19783 T27270 T27268 arg2Of or,targeting
R19784 T27270 T27273 arg1Of or,targeting
R19785 T27272 T27270 arg2Of shRNA,or
R19786 T27272 T27271 arg1Of shRNA,control
R19787 T27274 T27273 arg2Of GFP,targeting
R19788 T27276 T27275 arg2Of constructed,were
R19789 T27276 T27277 arg1Of constructed,as
R19790 T27276 T27281 arg1Of constructed,and
R19791 T27278 T27277 arg2Of described,as
R19792 T27278 T27279 arg1Of described,in
R19793 T27280 T27279 arg2Of Materials,in
R19794 T27281 T27303 arg1Of and,and
R19795 T27283 T27282 arg1Of Cells,Methods.
R19796 T27283 T27284 arg1Of Cells,were
R19797 T27283 T27285 arg2Of Cells,infected
R19798 T27283 T27295 arg1Of Cells,left
R19799 T27285 T27284 arg2Of infected,were
R19800 T27285 T27286 arg1Of infected,with
R19801 T27285 T27294 arg1Of infected,or
R19802 T27289 T27286 arg2Of CDC1551,with
R19803 T27289 T27287 arg1Of CDC1551,MTb
R19804 T27289 T27288 arg1Of CDC1551,strain
R19805 T27289 T27290 arg1Of CDC1551,(
R19806 T27292 T27290 arg2Of cells∶bacilli,(
R19807 T27292 T27291 arg1Of cells∶bacilli,1∶1
R19808 T27293 T27290 arg3Of ),(
R19809 T27294 T27281 arg2Of or,and
R19810 T27295 T27294 arg2Of left,or
R19811 T27295 T27297 arg1Of left,for
R19812 T27295 T27300 arg1Of left,at
R19813 T27297 T27296 arg1Of for,uninfected
R19814 T27299 T27297 arg2Of hours,for
R19815 T27299 T27298 arg1Of hours,16
R19816 T27301 T27300 arg2Of 37°C,at
R19817 T27303 T27302 arg1Of and,","
R19818 T27304 T27305 arg1Of RNA,was
R19819 T27304 T27306 arg2Of RNA,analyzed
R19820 T27306 T27303 arg2Of analyzed,and
R19821 T27306 T27305 arg2Of analyzed,was
R19822 T27309 T27307 arg1Of levels,NFAT5
R19823 T27309 T27308 arg1Of levels,mRNA
R19824 T27309 T27310 arg1Of levels,were
R19825 T27309 T27312 arg2Of levels,inhibited
R19826 T27312 T27310 arg2Of inhibited,were
R19827 T27312 T27311 arg1Of inhibited,significantly
R19828 T27312 T27313 arg1Of inhibited,in
R19829 T27312 T27324 arg1Of inhibited,compared
R19830 T27315 T27313 arg2Of cells,in
R19831 T27315 T27314 arg1Of cells,the
R19832 T27315 T27316 arg2Of cells,transduced
R19833 T27316 T27317 arg1Of transduced,with
R19834 T27319 T27317 arg2Of shRNA,with
R19835 T27319 T27318 arg1Of shRNA,MyD88-specific
R19836 T27319 T27320 arg1Of shRNA,(
R19837 T27322 T27320 arg2Of bars,(
R19838 T27322 T27321 arg1Of bars,black
R19839 T27323 T27320 arg3Of ),(
R19840 T27325 T27324 arg2Of with,compared
R19841 T27327 T27325 arg2Of cells,with
R19842 T27327 T27326 arg1Of cells,the
R19843 T27327 T27328 arg2Of cells,transduced
R19844 T27328 T27329 arg1Of transduced,with
R19845 T27331 T27329 arg2Of shRNA,with
R19846 T27331 T27330 arg1Of shRNA,control
R19847 T27331 T27332 arg1Of shRNA,(
R19848 T27331 T27336 arg1Of shRNA,in
R19849 T27334 T27332 arg2Of bars,(
R19850 T27334 T27333 arg1Of bars,open
R19851 T27335 T27332 arg3Of ),(
R19852 T27336 T27337 arg1Of in,both
R19853 T27340 T27341 arg1Of absence,or
R19854 T27341 T27336 arg2Of or,in
R19855 T27341 T27338 arg1Of or,","
R19856 T27341 T27339 arg1Of or,the
R19857 T27341 T27343 arg1Of or,of
R19858 T27342 T27341 arg2Of presence,or
R19859 T27345 T27343 arg2Of infection,of
R19860 T27345 T27344 arg1Of infection,MTb
R19861 T27346 T27347 arg1Of TNF,and
R19862 T27348 T27347 arg2Of CD86,and
R19863 T27349 T27346 arg1Of mRNAs,TNF
R19864 T27349 T27348 arg1Of mRNAs,CD86
R19865 T27349 T27353 arg2Of mRNAs,of
R19866 T27349 T27354 arg1Of mRNAs,which
R19867 T27349 T27378 arg1Of mRNAs,are
R19868 T27349 T27379 arg2Of mRNAs,required
R19869 T27352 T27351 arg1Of expression,the
R19870 T27352 T27353 arg1Of expression,of
R19871 T27352 T27355 arg1Of expression,are
R19872 T27352 T27356 arg1Of expression,MyD88-dependent
R19873 T27352 T27358 arg1Of expression,-independent
R19874 T27352 T27366 arg1Of expression,were
R19875 T27352 T27367 arg2Of expression,measured
R19876 T27355 T27361 arg1Of are,","
R19877 T27356 T27357 arg1Of MyD88-dependent,and
R19878 T27357 T27355 arg2Of and,are
R19879 T27357 T27359 arg1Of and,","
R19880 T27357 T27360 arg1Of and,respectively
R19881 T27358 T27357 arg2Of -independent,and
R19882 T27361 T27350 arg1Of ",",","
R19883 T27364 T27362 arg2Of infection,during
R19884 T27364 T27363 arg1Of infection,MTb
R19885 T27367 T27361 arg2Of measured,","
R19886 T27367 T27362 arg1Of measured,during
R19887 T27367 T27365 arg1Of measured,","
R19888 T27367 T27366 arg2Of measured,were
R19889 T27367 T27368 arg1Of measured,as
R19890 T27369 T27370 arg1Of controls.,(
R19891 T27371 T27370 arg2Of C,(
R19892 T27371 T27372 arg1Of C,","
R19893 T27373 T27372 arg2Of D,","
R19894 T27374 T27370 arg3Of ),(
R19895 T27375 T27376 arg1Of IRAK1,and
R19896 T27376 T27368 arg2Of and,as
R19897 T27376 T27369 arg1Of and,controls.
R19898 T27377 T27376 arg2Of TRAF6,and
R19899 T27379 T27378 arg2Of required,are
R19900 T27379 T27380 arg1Of required,for
R19901 T27382 T27380 arg2Of induction,for
R19902 T27382 T27381 arg1Of induction,MTb
R19903 T27382 T27383 arg1Of induction,of
R19904 T27382 T27387 arg1Of induction,in
R19905 T27386 T27383 arg2Of expression,of
R19906 T27386 T27384 arg1Of expression,NFAT5
R19907 T27386 T27385 arg1Of expression,gene
R19908 T27389 T27387 arg2Of monocytes,in
R19909 T27389 T27388 arg1Of monocytes,human
R19910 T27391 T27390 arg1Of cells,THP-1
R19911 T27391 T27392 arg1Of cells,that
R19912 T27391 T27394 arg1Of cells,express
R19913 T27391 T27400 arg1Of cells,were
R19914 T27391 T27401 arg2Of cells,constructed
R19915 T27394 T27393 arg1Of express,constitutively
R19916 T27396 T27395 arg1Of IRAK1-,lentivirally-delivered
R19917 T27396 T27397 arg1Of IRAK1-,or
R19918 T27397 T27394 arg2Of or,express
R19919 T27399 T27397 arg2Of shRNA,or
R19920 T27399 T27398 arg1Of shRNA,TRAF6-specific
R19921 T27401 T27400 arg2Of constructed,were
R19922 T27401 T27402 arg1Of constructed,as
R19923 T27401 T27406 arg1Of constructed,and
R19924 T27403 T27402 arg2Of described,as
R19925 T27403 T27404 arg1Of described,in
R19926 T27405 T27404 arg2Of Materials,in
R19927 T27409 T27407 arg1Of cells,Methods.
R19928 T27409 T27408 arg1Of cells,THP-1
R19929 T27409 T27410 arg1Of cells,expressing
R19930 T27409 T27413 arg1Of cells,were
R19931 T27409 T27414 arg2Of cells,used
R19932 T27412 T27410 arg2Of shRNA,expressing
R19933 T27412 T27411 arg1Of shRNA,control
R19934 T27414 T27406 arg2Of used,and
R19935 T27414 T27413 arg2Of used,were
R19936 T27414 T27415 arg1Of used,as
R19937 T27416 T27415 arg2Of described,as
R19938 T27416 T27417 arg1Of described,in
R19939 T27418 T27417 arg2Of 7B,in
R19940 T27419 T27420 arg1Of Cells,were
R19941 T27419 T27421 arg2Of Cells,infected
R19942 T27419 T27427 arg1Of Cells,left
R19943 T27421 T27420 arg2Of infected,were
R19944 T27421 T27422 arg1Of infected,with
R19945 T27421 T27426 arg1Of infected,or
R19946 T27425 T27422 arg2Of CDC1551,with
R19947 T27425 T27423 arg1Of CDC1551,MTb
R19948 T27425 T27424 arg1Of CDC1551,strain
R19949 T27426 T27435 arg1Of or,and
R19950 T27427 T27426 arg2Of left,or
R19951 T27427 T27429 arg1Of left,for
R19952 T27427 T27432 arg1Of left,at
R19953 T27429 T27428 arg1Of for,uninfected
R19954 T27431 T27429 arg2Of hours,for
R19955 T27431 T27430 arg1Of hours,16
R19956 T27433 T27432 arg2Of 37°C,at
R19957 T27435 T27434 arg1Of and,","
R19958 T27436 T27437 arg1Of RNA,was
R19959 T27436 T27438 arg2Of RNA,analyzed
R19960 T27438 T27435 arg2Of analyzed,and
R19961 T27438 T27437 arg2Of analyzed,was
R19962 T27440 T27439 arg1Of expression,NFAT5
R19963 T27440 T27441 arg1Of expression,was
R19964 T27440 T27443 arg2Of expression,inhibited
R19965 T27443 T27441 arg2Of inhibited,was
R19966 T27443 T27442 arg1Of inhibited,significantly
R19967 T27443 T27444 arg1Of inhibited,in
R19968 T27447 T27444 arg2Of cells,in
R19969 T27447 T27445 arg1Of cells,the
R19970 T27447 T27446 arg1Of cells,MTb-infected
R19971 T27447 T27448 arg1Of cells,expressing
R19972 T27448 T27464 arg1Of expressing,compared
R19973 T27450 T27449 arg1Of IRAK1,either
R19974 T27450 T27451 arg1Of IRAK1,(
R19975 T27450 T27454 arg1Of IRAK1,or
R19976 T27452 T27451 arg2Of C,(
R19977 T27453 T27451 arg3Of ),(
R19978 T27454 T27448 arg2Of or,expressing
R19979 T27457 T27456 arg2Of D,(
R19980 T27458 T27456 arg3Of ),(
R19981 T27459 T27454 arg2Of shRNA,or
R19982 T27459 T27455 arg1Of shRNA,TRAF6
R19983 T27459 T27456 arg1Of shRNA,(
R19984 T27459 T27460 arg1Of shRNA,(
R19985 T27462 T27460 arg2Of bars,(
R19986 T27462 T27461 arg1Of bars,black
R19987 T27463 T27460 arg3Of ),(
R19988 T27465 T27464 arg2Of to,compared
R19989 T27466 T27465 arg2Of cells,to
R19990 T27466 T27467 arg1Of cells,expressing
R19991 T27469 T27467 arg2Of shRNA,expressing
R19992 T27469 T27468 arg1Of shRNA,control
R19993 T27469 T27470 arg1Of shRNA,(
R19994 T27472 T27470 arg2Of bars,(
R19995 T27472 T27471 arg1Of bars,open
R19996 T27473 T27470 arg3Of ),(
R19997 T27474 T27475 arg1Of TNF,and
R19998 T27476 T27475 arg2Of CD86,and
R19999 T27477 T27474 arg1Of mRNAs,TNF
R20000 T27477 T27476 arg1Of mRNAs,CD86
R20001 T27477 T27478 arg1Of mRNAs,","
R20002 T27477 T27480 arg2Of mRNAs,of
R20003 T27477 T27481 arg1Of mRNAs,which
R20004 T27477 T27493 arg1Of mRNAs,were
R20005 T27477 T27494 arg2Of mRNAs,measured
R20006 T27479 T27480 arg1Of both,of
R20007 T27479 T27482 arg1Of both,require
R20008 T27483 T27484 arg1Of IRAK1,and
R20009 T27484 T27482 arg2Of and,require
R20010 T27484 T27486 modOf and,to
R20011 T27484 T27487 arg1Of and,be
R20012 T27484 T27488 arg2Of and,induced
R20013 T27485 T27484 arg2Of TRAF6,and
R20014 T27488 T27486 arg1Of induced,to
R20015 T27488 T27487 arg2Of induced,be
R20016 T27491 T27488 arg1Of activation,induced
R20017 T27491 T27489 arg2Of activation,by
R20018 T27491 T27490 arg1Of activation,PRR
R20019 T27494 T27492 arg1Of measured,","
R20020 T27494 T27493 arg2Of measured,were
R20021 T27494 T27495 arg1Of measured,as
R20022 T27496 T27495 arg2Of controls.,as
R20023 T27496 T27497 arg1Of controls.,(
R20024 T27498 T27499 arg1Of *,","
R20025 T27500 T27499 arg2Of p,","
R20026 T27502 T27497 arg2Of 0.05,(
R20027 T27502 T27498 arg1Of 0.05,*
R20028 T27502 T27501 arg1Of 0.05,<
R20029 T27502 T27503 arg1Of 0.05,;
R20030 T27504 T27503 arg2Of **,;
R20031 T27504 T27505 arg1Of **,","
R20032 T27506 T27505 arg2Of p,","
R20033 T27506 T27507 arg1Of p,<
R20034 T27506 T27508 arg1Of p,0.01
R20035 T27509 T27497 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T27043 1794-1798 Antecedent denotes CD86
T27042 1786-1789 Antecedent denotes TNF
T27041 1814-1819 Anaphor denotes which
T27040 1039-1043 Antecedent denotes CD86
T27039 1031-1034 Antecedent denotes TNF
T27038 1069-1074 Anaphor denotes which
R19651 T27038 T27039 boundBy which,TNF
R19652 T27038 T27040 boundBy which,CD86
R19653 T27041 T27042 boundBy which,TNF
R19654 T27041 T27043 boundBy which,CD86

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T27046 18-22 Protein denotes TLR2
T27070 1786-1789 Protein denotes TNF
T27069 1767-1772 Protein denotes shRNA
T27068 1701-1706 Protein denotes TRAF6
T27067 1688-1693 Protein denotes IRAK1
T27066 1599-1604 Protein denotes NFAT5
T27065 1456-1461 Protein denotes shRNA
T27064 1348-1353 Protein denotes TRAF6
T27063 1338-1343 Protein denotes IRAK1
T27062 1233-1238 Protein denotes NFAT5
T27061 1193-1198 Protein denotes TRAF6
T27060 1183-1188 Protein denotes IRAK1
T27059 1079-1084 Protein denotes MyD88
T27058 1039-1043 Protein denotes CD86
T27057 1031-1034 Protein denotes TNF
T27056 880-885 Protein denotes MyD88
T27055 804-809 Protein denotes NFAT5
T27054 617-620 Protein denotes GFP
T27053 584-589 Protein denotes MyD88
T27052 463-468 Protein denotes NFAT5
T27051 423-428 Protein denotes MyD88
T27050 279-284 Protein denotes NFAT5
T27049 246-251 Protein denotes NFAT5
T27048 117-121 Protein denotes TLR2
T27047 46-51 Protein denotes NFAT5
T27073 1838-1843 Protein denotes TRAF6
T27072 1828-1833 Protein denotes IRAK1
T27071 1794-1798 Protein denotes CD86

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T27529 1794-1798 http://www.uniprot.org/uniprot/P42081 denotes CD86
T27528 1039-1043 http://www.uniprot.org/uniprot/P42081 denotes CD86
T27527 1786-1789 http://www.uniprot.org/uniprot/P01375 denotes TNF
T27526 1031-1034 http://www.uniprot.org/uniprot/P01375 denotes TNF
T27525 617-620 http://www.uniprot.org/uniprot/Q9U6Y4 denotes GFP
T27524 117-121 http://www.uniprot.org/uniprot/O60603 denotes TLR2
T27523 18-22 http://www.uniprot.org/uniprot/O60603 denotes TLR2
T27522 1599-1604 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27521 1233-1238 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27520 804-809 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27519 463-468 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27518 279-284 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27517 246-251 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27516 46-51 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27514 1079-1084 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27513 880-885 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27512 584-589 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27511 423-428 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27533 1838-1843 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T27532 1701-1706 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T27531 1348-1353 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T27530 1193-1198 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T27079 1239-1254 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T27078 469-484 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T27077 57-66 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T27076 52-66 http://purl.obolibrary.org/obo/GO_0009299 denotes mRNA synthesis

GO-MF

Id Subject Object Predicate Lexical cue
T27080 131-137 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand

GO-CC

Id Subject Object Predicate Lexical cue
T27089 1742-1747 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27088 1664-1669 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27087 1431-1436 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27086 1281-1286 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27085 932-937 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27084 858-863 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27083 511-516 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27082 338-343 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27081 87-92 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T26970 1786-1928 Sentence denotes TNF and CD86 mRNAs, both of which require IRAK1 and TRAF6 to be induced by PRR activation, were measured as controls. (*, p<0.05; **, p<0.01).
T26969 1599-1785 Sentence denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D) shRNA (black bars) compared to cells expressing control shRNA (open bars).
T26968 1492-1598 Sentence denotes Cells were infected with MTb strain CDC1551 or left uninfected for 16 hours at 37°C, and RNA was analyzed.
T26967 1275-1491 Sentence denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA were constructed as described in Materials and Methods. THP-1 cells expressing control shRNA were used as described in 7B.
T26966 1031-1274 Sentence denotes TNF and CD86 mRNAs, the expression of which are MyD88-dependent and -independent, respectively, during MTb infection, were measured as controls. (C, D) IRAK1 and TRAF6 are required for MTb induction of NFAT5 gene expression in human monocytes.
T26965 804-1030 Sentence denotes NFAT5 mRNA levels were significantly inhibited in the cells transduced with MyD88-specific shRNA (black bars) compared with the cells transduced with control shRNA (open bars) in both, the absence or presence of MTb infection.
T26964 505-803 Sentence denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP were constructed as described in Materials and Methods. Cells were infected with MTb strain CDC1551 (1∶1 cells∶bacilli) or left uninfected for 16 hours at 37°C, and RNA was analyzed.
T26963 279-504 Sentence denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys (*, p<0.05) or infected with MTb (**, p<0.01). (B) MyD88 is important for MTb induction of NFAT5 gene expression in human monocytes.
T26962 230-278 Sentence denotes After 16 hours, NFAT5 mRNA levels were measured.
T26961 81-229 Sentence denotes THP-1 cells were incubated with the TLR2-specific ligand Pam3Cys (5 µg/ml), infected with MTb strain CDC1551 (1∶1 cells∶bacilli), or left untreated.
T26960 0-80 Sentence denotes (A) Engagement of TLR2 significantly enhances NFAT5 mRNA synthesis in monocytes.
T246 0-80 Sentence denotes (A) Engagement of TLR2 significantly enhances NFAT5 mRNA synthesis in monocytes.
T247 81-229 Sentence denotes THP-1 cells were incubated with the TLR2-specific ligand Pam3Cys (5 µg/ml), infected with MTb strain CDC1551 (1∶1 cells∶bacilli), or left untreated.
T248 230-278 Sentence denotes After 16 hours, NFAT5 mRNA levels were measured.
T249 279-504 Sentence denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys (*, p<0.05) or infected with MTb (**, p<0.01). (B) MyD88 is important for MTb induction of NFAT5 gene expression in human monocytes.
T250 505-676 Sentence denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP were constructed as described in Materials and Methods.
T251 677-803 Sentence denotes Cells were infected with MTb strain CDC1551 (1∶1 cells∶bacilli) or left uninfected for 16 hours at 37°C, and RNA was analyzed.
T252 804-1030 Sentence denotes NFAT5 mRNA levels were significantly inhibited in the cells transduced with MyD88-specific shRNA (black bars) compared with the cells transduced with control shRNA (open bars) in both, the absence or presence of MTb infection.
T253 1031-1274 Sentence denotes TNF and CD86 mRNAs, the expression of which are MyD88-dependent and -independent, respectively, during MTb infection, were measured as controls. (C, D) IRAK1 and TRAF6 are required for MTb induction of NFAT5 gene expression in human monocytes.
T254 1275-1424 Sentence denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA were constructed as described in Materials and Methods.
T255 1425-1491 Sentence denotes THP-1 cells expressing control shRNA were used as described in 7B.
T256 1492-1598 Sentence denotes Cells were infected with MTb strain CDC1551 or left uninfected for 16 hours at 37°C, and RNA was analyzed.
T257 1599-1785 Sentence denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D) shRNA (black bars) compared to cells expressing control shRNA (open bars).
T258 1786-1928 Sentence denotes TNF and CD86 mRNAs, both of which require IRAK1 and TRAF6 to be induced by PRR activation, were measured as controls. (*, p<0.05; **, p<0.01).

simple1

Id Subject Object Predicate Lexical cue
T27124 1838-1843 Protein denotes TRAF6
T27123 1828-1833 Protein denotes IRAK1
T27122 1794-1798 Protein denotes CD86
T27121 1786-1789 Protein denotes TNF
T27120 1767-1772 Protein denotes shRNA
T27119 1701-1706 Protein denotes TRAF6
T27118 1688-1693 Protein denotes IRAK1
T27117 1599-1604 Protein denotes NFAT5
T27116 1456-1461 Protein denotes shRNA
T27115 1348-1353 Protein denotes TRAF6
T27114 1338-1343 Protein denotes IRAK1
T27113 1233-1238 Protein denotes NFAT5
T27112 1193-1198 Protein denotes TRAF6
T27111 1183-1188 Protein denotes IRAK1
T27110 1079-1084 Protein denotes MyD88
T27109 1039-1043 Protein denotes CD86
T27108 1031-1034 Protein denotes TNF
T27107 880-885 Protein denotes MyD88
T27106 804-809 Protein denotes NFAT5
T27105 617-620 Protein denotes GFP
T27104 584-589 Protein denotes MyD88
T27103 463-468 Protein denotes NFAT5
T27102 423-428 Protein denotes MyD88
T27101 279-284 Protein denotes NFAT5
T27100 246-251 Protein denotes NFAT5
T27099 117-121 Protein denotes TLR2
T27098 46-51 Protein denotes NFAT5
T27097 18-22 Protein denotes TLR2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T28243 1820-1827 Positive_regulation denotes require
T28242 1850-1857 Positive_regulation denotes induced
T28241 1605-1615 Gene_expression denotes expression
T28240 1634-1643 Negative_regulation denotes inhibited
T28239 1748-1758 Gene_expression denotes expressing
T28238 1670-1680 Gene_expression denotes expressing
T28237 1437-1447 Gene_expression denotes expressing
T28236 1307-1314 Gene_expression denotes express
T28235 1203-1211 Positive_regulation denotes required
T28234 1220-1229 Positive_regulation denotes induction
T28233 1244-1254 Gene_expression denotes expression
T28232 1085-1094 Regulation denotes dependent
T28231 1055-1065 Gene_expression denotes expression
T28230 841-850 Negative_regulation denotes inhibited
T28229 815-821 Transcription denotes levels
T28228 537-544 Gene_expression denotes express
T28227 474-484 Gene_expression denotes expression
T28226 450-459 Positive_regulation denotes induction
T28225 319-328 Positive_regulation denotes increased
T28224 290-300 Transcription denotes expression
T28223 257-263 Transcription denotes levels
T28222 57-66 Transcription denotes synthesis
T28221 37-45 Positive_regulation denotes enhances
T28220 4-14 Binding denotes Engagement
T28217 1838-1843 Protein denotes TRAF6
T28216 1828-1833 Protein denotes IRAK1
T28215 1794-1798 Protein denotes CD86
T28214 1786-1789 Protein denotes TNF
T28213 1767-1772 Protein denotes shRNA
T28212 1701-1706 Protein denotes TRAF6
T28211 1688-1693 Protein denotes IRAK1
T28210 1599-1604 Protein denotes NFAT5
T28209 1456-1461 Protein denotes shRNA
T28208 1348-1353 Protein denotes TRAF6
T28207 1338-1343 Protein denotes IRAK1
T28206 1233-1238 Protein denotes NFAT5
T28205 1193-1198 Protein denotes TRAF6
T28204 1183-1188 Protein denotes IRAK1
T28203 1079-1084 Protein denotes MyD88
T28202 1039-1043 Protein denotes CD86
T28201 1031-1034 Protein denotes TNF
T28200 880-885 Protein denotes MyD88
T28199 804-809 Protein denotes NFAT5
T28198 617-620 Protein denotes GFP
T28197 584-589 Protein denotes MyD88
T28196 463-468 Protein denotes NFAT5
T28195 423-428 Protein denotes MyD88
T28194 279-284 Protein denotes NFAT5
T28193 246-251 Protein denotes NFAT5
T28192 117-121 Protein denotes TLR2
T28191 46-51 Protein denotes NFAT5
T28190 18-22 Protein denotes TLR2
R20576 T28190 T28220 themeOf TLR2,Engagement
R20577 T28191 T28222 themeOf NFAT5,synthesis
R20578 T28193 T28223 themeOf NFAT5,levels
R20579 T28194 T28224 themeOf NFAT5,expression
R20580 T28196 T28227 themeOf NFAT5,expression
R20587 T28204 T28235 themeOf IRAK1,required
R20588 T28205 T28235 causeOf TRAF6,required
R20589 T28206 T28233 themeOf NFAT5,expression
R20590 T28207 T28236 themeOf IRAK1,express
R20591 T28209 T28237 themeOf shRNA,expressing
R20592 T28210 T28241 themeOf NFAT5,expression
R20593 T28211 T28238 themeOf IRAK1,expressing
R20594 T28212 T28238 themeOf TRAF6,expressing
R20595 T28213 T28239 themeOf shRNA,expressing
R20596 T28216 T28243 themeOf IRAK1,require
R20597 T28216 T28242 themeOf IRAK1,induced
R20599 T28222 T28221 themeOf synthesis,enhances
R20600 T28224 T28225 themeOf expression,increased
R20604 T28233 T28234 themeOf expression,induction
R20605 T28241 T28240 themeOf expression,inhibited
R20581 T28197 T28228 themeOf MyD88,express
R20582 T28198 T28228 themeOf GFP,express
R20583 T28199 T28229 themeOf NFAT5,levels
R20584 T28199 T28230 themeOf NFAT5,inhibited
R20585 T28201 T28231 themeOf TNF,expression
R20586 T28202 T28231 themeOf CD86,expression
R20601 T28227 T28226 themeOf expression,induction
R20602 T28231 T28232 themeOf expression,dependent
R20603 T28231 T28232 themeOf expression,dependent

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T27671 537-544 Gene_expression denotes express
T27670 450-459 Positive_regulation denotes induction
T27669 474-484 Gene_expression denotes expression
T27668 290-300 Transcription denotes expression
T27667 319-328 Positive_regulation denotes increased
T27666 37-45 Positive_regulation denotes enhances
T27665 57-66 Transcription denotes synthesis
T27664 4-14 Binding denotes Engagement
T27661 1838-1843 Protein denotes TRAF6
T27660 1828-1833 Protein denotes IRAK1
T27659 1794-1798 Protein denotes CD86
T27658 1786-1789 Protein denotes TNF
T27657 1767-1772 Protein denotes shRNA
T27656 1701-1706 Protein denotes TRAF6
T27655 1688-1693 Protein denotes IRAK1
T27654 1599-1604 Protein denotes NFAT5
T27653 1456-1461 Protein denotes shRNA
T27652 1348-1353 Protein denotes TRAF6
T27651 1338-1343 Protein denotes IRAK1
T27650 1233-1238 Protein denotes NFAT5
T27649 1193-1198 Protein denotes TRAF6
T27648 1183-1188 Protein denotes IRAK1
T27647 1079-1084 Protein denotes MyD88
T27646 1039-1043 Protein denotes CD86
T27645 1031-1034 Protein denotes TNF
T27644 880-885 Protein denotes MyD88
T27643 804-809 Protein denotes NFAT5
T27642 617-620 Protein denotes GFP
T27641 584-589 Protein denotes MyD88
T27640 463-468 Protein denotes NFAT5
T27639 423-428 Protein denotes MyD88
T27638 279-284 Protein denotes NFAT5
T27637 246-251 Protein denotes NFAT5
T27636 117-121 Protein denotes TLR2
T27635 46-51 Protein denotes NFAT5
T27634 18-22 Protein denotes TLR2
T27684 1850-1857 Positive_regulation denotes induced
T27683 1820-1827 Positive_regulation denotes require
T27682 1670-1680 Gene_expression denotes expressing
T27681 1605-1615 Gene_expression denotes expression
T27680 1748-1758 Gene_expression denotes expressing
T27679 1634-1643 Negative_regulation denotes inhibited
T27678 1437-1447 Gene_expression denotes expressing
T27677 1307-1314 Gene_expression denotes express
T27676 1220-1229 Positive_regulation denotes induction
T27675 1244-1254 Gene_expression denotes expression
T27674 1203-1211 Positive_regulation denotes required
T27673 1055-1065 Gene_expression denotes expression
T27672 841-850 Negative_regulation denotes inhibited
R20089 T27634 T27664 themeOf TLR2,Engagement
R20090 T27635 T27665 themeOf NFAT5,synthesis
R20091 T27638 T27668 themeOf NFAT5,expression
R20092 T27640 T27669 themeOf NFAT5,expression
R20093 T27641 T27671 themeOf MyD88,express
R20094 T27642 T27671 themeOf GFP,express
R20095 T27643 T27672 themeOf NFAT5,inhibited
R20096 T27645 T27673 themeOf TNF,expression
R20097 T27646 T27673 themeOf CD86,expression
R20098 T27648 T27674 causeOf IRAK1,required
R20099 T27649 T27674 causeOf TRAF6,required
R20100 T27650 T27675 themeOf NFAT5,expression
R20101 T27651 T27677 themeOf IRAK1,express
R20102 T27653 T27678 themeOf shRNA,expressing
R20103 T27654 T27681 themeOf NFAT5,expression
R20104 T27655 T27682 themeOf IRAK1,expressing
R20105 T27656 T27682 themeOf TRAF6,expressing
R20106 T27657 T27680 themeOf shRNA,expressing
R20107 T27658 T27684 themeOf TNF,induced
R20108 T27660 T27683 themeOf IRAK1,require
R20109 T27660 T27684 themeOf IRAK1,induced
R20111 T27665 T27666 themeOf synthesis,enhances
R20112 T27668 T27667 themeOf expression,increased
R20113 T27669 T27670 themeOf expression,induction
R20114 T27675 T27676 themeOf expression,induction
R20115 T27676 T27674 themeOf induction,required
R20116 T27676 T27674 themeOf induction,required
R20117 T27681 T27679 themeOf expression,inhibited

DLUT931

Id Subject Object Predicate Lexical cue
T27553 1338-1343 Protein denotes IRAK1
T27552 1233-1238 Protein denotes NFAT5
T27551 1193-1198 Protein denotes TRAF6
T27550 1183-1188 Protein denotes IRAK1
T27549 1079-1084 Protein denotes MyD88
T27548 1039-1043 Protein denotes CD86
T27547 1031-1034 Protein denotes TNF
T27546 880-885 Protein denotes MyD88
T27545 804-809 Protein denotes NFAT5
T27544 617-620 Protein denotes GFP
T27543 584-589 Protein denotes MyD88
T27542 463-468 Protein denotes NFAT5
T27541 423-428 Protein denotes MyD88
T27540 279-284 Protein denotes NFAT5
T27539 246-251 Protein denotes NFAT5
T27538 117-121 Protein denotes TLR2
T27537 46-51 Protein denotes NFAT5
T27536 18-22 Protein denotes TLR2
T27566 4-14 Binding denotes Engagement
T27563 1838-1843 Protein denotes TRAF6
T27562 1828-1833 Protein denotes IRAK1
T27561 1794-1798 Protein denotes CD86
T27560 1786-1789 Protein denotes TNF
T27559 1767-1772 Protein denotes shRNA
T27558 1701-1706 Protein denotes TRAF6
T27557 1688-1693 Protein denotes IRAK1
T27556 1599-1604 Protein denotes NFAT5
T27555 1456-1461 Protein denotes shRNA
T27554 1348-1353 Protein denotes TRAF6
T27589 1820-1827 Positive_regulation denotes require
T27588 1748-1758 Gene_expression denotes expressing
T27587 1711-1716 Negative_regulation denotes shRNA
T27586 1670-1680 Gene_expression denotes expressing
T27585 1634-1643 Negative_regulation denotes inhibited
T27584 1605-1615 Gene_expression denotes expression
T27583 1437-1447 Gene_expression denotes expressing
T27582 1307-1314 Gene_expression denotes express
T27581 1203-1211 Positive_regulation denotes required
T27580 1220-1229 Positive_regulation denotes induction
T27579 1244-1254 Gene_expression denotes expression
T27578 1085-1094 Regulation denotes dependent
T27577 1055-1065 Gene_expression denotes expression
T27576 841-850 Negative_regulation denotes inhibited
T27575 815-821 Transcription denotes levels
T27574 537-544 Gene_expression denotes express
T27573 450-459 Positive_regulation denotes induction
T27572 474-484 Gene_expression denotes expression
T27571 319-328 Positive_regulation denotes increased
T27570 290-300 Transcription denotes expression
T27569 257-263 Transcription denotes levels
T27568 37-45 Positive_regulation denotes enhances
T27567 57-66 Transcription denotes synthesis
R20037 T27536 T27566 themeOf TLR2,Engagement
R20038 T27537 T27567 themeOf NFAT5,synthesis
R20039 T27539 T27569 themeOf NFAT5,levels
R20040 T27540 T27570 themeOf NFAT5,expression
R20041 T27542 T27572 themeOf NFAT5,expression
R20042 T27543 T27574 themeOf MyD88,express
R20043 T27544 T27574 themeOf GFP,express
R20044 T27545 T27575 themeOf NFAT5,levels
R20045 T27547 T27577 themeOf TNF,expression
R20046 T27548 T27577 themeOf CD86,expression
R20047 T27549 T27578 causeOf MyD88,dependent
R20049 T27550 T27581 causeOf IRAK1,required
R20051 T27552 T27579 themeOf NFAT5,expression
R20052 T27553 T27582 themeOf IRAK1,express
R20053 T27555 T27583 themeOf shRNA,expressing
R20054 T27556 T27584 themeOf NFAT5,expression
R20055 T27557 T27586 themeOf IRAK1,expressing
R20056 T27558 T27587 themeOf TRAF6,shRNA
R20058 T27559 T27588 themeOf shRNA,expressing
R20059 T27562 T27589 themeOf IRAK1,require
R20062 T27566 T27568 causeOf Engagement,enhances
R20063 T27567 T27568 themeOf synthesis,enhances
R20064 T27570 T27571 themeOf expression,increased
R20065 T27572 T27573 themeOf expression,induction
R20066 T27575 T27576 themeOf levels,inhibited
R20067 T27577 T27578 themeOf expression,dependent
R20068 T27577 T27578 themeOf expression,dependent
R20069 T27579 T27580 themeOf expression,induction
R20070 T27580 T27581 themeOf induction,required
R20072 T27584 T27585 themeOf expression,inhibited
R20048 T27549 T27578 causeOf MyD88,dependent
R20050 T27551 T27581 causeOf TRAF6,required
R20057 T27558 T27586 themeOf TRAF6,expressing
R20060 T27563 T27589 themeOf TRAF6,require
R20071 T27580 T27581 themeOf induction,required

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T28331 1013-1029 Regulation denotes of MTb infection
T28330 460-484 Gene_expression denotes of NFAT5 gene expression
T28328 1425-1461 Transcription denotes THP-1 cells expressing control shRNA
T28327 1425-1461 Gene_expression denotes THP-1 cells expressing control shRNA
T28326 505-620 Gene_expression denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
T28325 505-620 Transcription denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
T28324 279-300 Gene_expression denotes NFAT5 mRNA expression
T28323 1230-1254 Gene_expression denotes of NFAT5 gene expression
T28322 279-371 Positive_regulation denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys
T28321 1858-1875 Positive_regulation denotes by PRR activation
T28320 1275-1368 Gene_expression denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
T28319 1275-1368 Gene_expression denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
T28318 1275-1368 Transcription denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
T28317 1599-1710 Negative_regulation denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)
T28316 1134-1148 Regulation denotes MTb infection,
T28315 1599-1615 Gene_expression denotes NFAT5 expression
T28314 1134-1137 Protein denotes MTb
T28313 1193-1198 Protein denotes TRAF6
T28312 804-821 Protein denotes NFAT5 mRNA levels
T28311 376-377 Entity denotes p
T28308 880-913 Protein denotes MyD88-specific shRNA (black bars)
T28307 488-503 Entity denotes human monocytes
T28306 1315-1344 Protein denotes lentivirally-delivered IRAK1-
T28305 1348-1362 Protein denotes TRAF6-specific
T28304 1701-1706 Protein denotes TRAF6
T28303 1517-1520 Protein denotes MTb
T28302 722-739 Entity denotes 1∶1 cells∶bacilli
T28301 1492-1497 Entity denotes Cells
T28300 18-22 Protein denotes TLR2
T28299 1786-1789 Protein denotes TNF
T28298 962-979 Protein denotes shRNA (open bars)
T28297 786-789 Protein denotes RNA
T28296 246-251 Protein denotes NFAT5
T28295 545-620 Protein denotes lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
T28294 131-137 Entity denotes ligand
T28292 702-705 Protein denotes MTb
T28291 279-284 Protein denotes NFAT5
T28290 1581-1584 Protein denotes RNA
T28289 584-620 Protein denotes MyD88 or control shRNA targeting GFP
T28288 1031-1050 Protein denotes TNF and CD86 mRNAs,
T28287 1838-1843 Protein denotes TRAF6
T28285 505-620 Entity denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
T28284 410-411 Entity denotes p
T28283 1786-1804 Protein denotes TNF and CD86 mRNAs
T28282 1739-1747 Entity denotes to cells
T28281 1425-1461 Entity denotes THP-1 cells expressing control shRNA
T28280 880-894 Protein denotes MyD88-specific
T28279 1258-1273 Entity denotes human monocytes
T28278 1233-1238 Protein denotes NFAT5
T28277 334-343 Entity denotes the cells
T28276 117-130 Protein denotes TLR2-specific
T28275 1275-1368 Entity denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
T28274 1794-1798 Protein denotes CD86
T28273 1599-1604 Protein denotes NFAT5
T28272 677-682 Entity denotes Cells
T28271 401-404 Protein denotes MTb
T28270 1767-1772 Protein denotes shRNA
T28269 617-620 Protein denotes GFP
T28268 923-961 Entity denotes with the cells transduced with control
T28267 1031-1034 Protein denotes TNF
T28266 1861-1864 Protein denotes PRR
T28265 854-961 Entity denotes the cells transduced with MyD88-specific shRNA (black bars) compared with the cells transduced with control
T28264 1039-1043 Protein denotes CD86
T28263 1688-1697 Protein denotes IRAK1 (C)
T28262 1647-1710 Protein denotes the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)
T28261 446-449 Protein denotes MTb
T28260 279-289 Protein denotes NFAT5 mRNA
T28259 1711-1716 Protein denotes shRNA
T28258 584-589 Protein denotes MyD88
T28257 171-174 Protein denotes MTb
T28256 810-814 Protein denotes mRNA
T28255 1016-1019 Protein denotes MTb
T28254 463-468 Protein denotes NFAT5
T28253 1828-1833 Protein denotes IRAK1
T28252 1216-1219 Protein denotes MTb
T28251 1183-1188 Protein denotes IRAK1
T28250 46-51 Protein denotes NFAT5
T28249 1079-1094 Protein denotes MyD88-dependent
T28248 1448-1461 Protein denotes control shRNA
T28247 70-79 Entity denotes monocytes
T28246 1348-1368 Protein denotes TRAF6-specific shRNA
T28245 423-428 Protein denotes MyD88
T28244 46-66 Protein denotes NFAT5 mRNA synthesis
R20606 T28246 T28318 themeOf TRAF6-specific shRNA,THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
R20607 T28246 T28319 themeOf TRAF6-specific shRNA,THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
R20608 T28248 T28327 themeOf control shRNA,THP-1 cells expressing control shRNA
R20609 T28248 T28328 themeOf control shRNA,THP-1 cells expressing control shRNA
R20610 T28254 T28330 themeOf NFAT5,of NFAT5 gene expression
R20611 T28255 T28331 themeOf MTb,of MTb infection
R20612 T28260 T28324 themeOf NFAT5 mRNA,NFAT5 mRNA expression
R20613 T28266 T28321 themeOf PRR,by PRR activation
R20614 T28273 T28315 themeOf NFAT5,NFAT5 expression
R20615 T28278 T28323 themeOf NFAT5,of NFAT5 gene expression
R20617 T28295 T28325 themeOf lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP,THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
R20618 T28295 T28326 themeOf lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP,THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
R20619 T28306 T28320 themeOf lentivirally-delivered IRAK1-,THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
R20620 T28314 T28316 themeOf MTb,"MTb infection,"
R20621 T28315 T28317 themeOf NFAT5 expression,NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)
R20622 T28324 T28322 themeOf NFAT5 mRNA expression,NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T28187 1927-1928 . denotes .
T28089 1488-1490 NN denotes 7B
T28088 1485-1487 IN denotes in
T28087 1475-1484 VBN denotes described
T28086 1472-1474 IN denotes as
T28085 1467-1471 VBN denotes used
T28084 1462-1466 VBD denotes were
T28083 1456-1461 NNP denotes shRNA
T28082 1448-1455 NN denotes control
T28081 1437-1447 VBG denotes expressing
T28080 1431-1436 NNS denotes cells
T28079 1425-1430 CD denotes THP-1
T28078 1423-1424 . denotes .
T28077 1416-1423 NNPS denotes Methods
T28076 1412-1415 CC denotes and
T28075 1402-1411 NNPS denotes Materials
T28074 1399-1401 IN denotes in
T28073 1389-1398 VBN denotes described
T28072 1386-1388 IN denotes as
T28071 1374-1385 VBN denotes constructed
T28070 1369-1373 VBD denotes were
T28069 1363-1368 NN denotes shRNA
T28068 1348-1362 JJ denotes TRAF6-specific
T28067 1345-1347 CC denotes or
T28066 1343-1344 : denotes -
T28065 1338-1343 NNP denotes IRAK1
T28064 1315-1337 JJ denotes lentivirally-delivered
T28063 1307-1314 VBP denotes express
T28062 1292-1306 RB denotes constitutively
T28061 1287-1291 WDT denotes that
T28060 1281-1286 NNS denotes cells
T28059 1275-1280 CD denotes THP-1
T28058 1273-1274 . denotes .
T28057 1264-1273 NNS denotes monocytes
T28056 1258-1263 JJ denotes human
T28055 1255-1257 IN denotes in
T28054 1244-1254 NN denotes expression
T28053 1239-1243 NN denotes gene
T28052 1233-1238 CD denotes NFAT5
T28051 1230-1232 IN denotes of
T28050 1220-1229 NN denotes induction
T28049 1216-1219 NNP denotes MTb
T28048 1212-1215 IN denotes for
T28047 1203-1211 VBN denotes required
T28046 1199-1202 VBP denotes are
T28045 1193-1198 NNP denotes TRAF6
T28044 1189-1192 CC denotes and
T28043 1183-1188 NNP denotes IRAK1
T28042 1181-1182 -RRB- denotes )
T28041 1180-1181 NNP denotes D
T28040 1178-1179 , denotes ,
T28039 1177-1178 NNP denotes C
T28038 1176-1177 -LRB- denotes (
T28037 1174-1175 . denotes .
T28036 1166-1174 NNS denotes controls
T28035 1163-1165 IN denotes as
T28034 1154-1162 VBN denotes measured
T28033 1149-1153 VBD denotes were
T28032 1147-1148 , denotes ,
T28031 1138-1147 NN denotes infection
T28030 1134-1137 NNP denotes MTb
T28029 1127-1133 IN denotes during
T28028 1125-1126 , denotes ,
T28027 1113-1125 RB denotes respectively
T28026 1111-1112 , denotes ,
T28025 1100-1111 JJ denotes independent
T28024 1099-1100 : denotes -
T28023 1095-1098 CC denotes and
T28022 1079-1094 JJ denotes MyD88-dependent
T28021 1075-1078 VBP denotes are
T28020 1069-1074 WDT denotes which
T28019 1066-1068 IN denotes of
T28018 1055-1065 NN denotes expression
T28017 1051-1054 DT denotes the
T28016 1049-1050 , denotes ,
T28015 1044-1049 NNP denotes mRNAs
T28014 1039-1043 NNP denotes CD86
T28013 1035-1038 CC denotes and
T28012 1031-1034 NNP denotes TNF
T28011 1029-1030 . denotes .
T28010 1020-1029 NN denotes infection
T28009 1016-1019 NNP denotes MTb
T28008 1013-1015 IN denotes of
T28007 1004-1012 NN denotes presence
T28006 1001-1003 CC denotes or
T28005 993-1000 NN denotes absence
T28004 989-992 DT denotes the
T28003 987-988 , denotes ,
T28002 983-987 DT denotes both
T28001 980-982 IN denotes in
T28000 978-979 -RRB- denotes )
T27999 974-978 NNS denotes bars
T27998 969-973 JJ denotes open
T27997 968-969 -LRB- denotes (
T27996 962-967 NNP denotes shRNA
T27995 954-961 NN denotes control
T27994 949-953 IN denotes with
T27993 938-948 VBN denotes transduced
T27992 932-937 NNS denotes cells
T27991 928-931 DT denotes the
T27990 923-927 IN denotes with
T27989 914-922 VBN denotes compared
T27988 912-913 -RRB- denotes )
T27987 908-912 NNS denotes bars
T27986 902-907 JJ denotes black
T27985 901-902 -LRB- denotes (
T27984 895-900 NNP denotes shRNA
T27983 880-894 JJ denotes MyD88-specific
T27982 875-879 IN denotes with
T27981 864-874 VBN denotes transduced
T27980 858-863 NNS denotes cells
T27979 854-857 DT denotes the
T27978 851-853 IN denotes in
T27977 841-850 VBN denotes inhibited
T27976 827-840 RB denotes significantly
T27975 822-826 VBD denotes were
T27974 815-821 NNS denotes levels
T27973 810-814 NNP denotes mRNA
T27972 804-809 CD denotes NFAT5
T27971 802-803 . denotes .
T27970 794-802 VBN denotes analyzed
T27969 790-793 VBD denotes was
T27968 786-789 NNP denotes RNA
T27967 782-785 CC denotes and
T27966 780-781 , denotes ,
T27965 779-780 NNP denotes C
T27964 778-779 CD denotes °
T27963 776-778 CD denotes 37
T27962 773-775 IN denotes at
T27961 767-772 NNS denotes hours
T27960 764-766 CD denotes 16
T27959 760-763 IN denotes for
T27958 749-759 JJ denotes uninfected
T27957 744-748 VBN denotes left
T27956 741-743 CC denotes or
T27955 739-740 -RRB- denotes )
T27954 732-739 NNS denotes bacilli
T27953 731-732 VBP denotes ∶
T27952 726-731 NNS denotes cells
T27951 724-725 CD denotes 1
T27950 723-724 CD denotes ∶
T27949 722-723 CD denotes 1
T27948 721-722 -LRB- denotes (
T27947 713-720 NNP denotes CDC1551
T27946 706-712 NN denotes strain
T27945 702-705 NNP denotes MTb
T27944 697-701 IN denotes with
T27943 688-696 VBN denotes infected
T27942 683-687 VBD denotes were
T27941 677-682 NNS denotes Cells
T27940 675-676 . denotes .
T27939 668-675 NNPS denotes Methods
T27938 664-667 CC denotes and
T27937 654-663 NNPS denotes Materials
T27936 651-653 IN denotes in
T27935 641-650 VBN denotes described
T27934 638-640 IN denotes as
T27933 626-637 VBN denotes constructed
T27932 621-625 VBD denotes were
T27931 617-620 NNP denotes GFP
T27930 607-616 VBG denotes targeting
T27929 601-606 NNP denotes shRNA
T27928 593-600 VB denotes control
T27927 590-592 CC denotes or
T27926 584-589 NNP denotes MyD88
T27925 574-583 VBG denotes targeting
T27924 568-573 NNP denotes shRNA
T27923 545-567 JJ denotes lentivirally-delivered
T27922 537-544 VBP denotes express
T27921 522-536 RB denotes constitutively
T27920 517-521 WDT denotes that
T27919 511-516 NNS denotes cells
T27918 505-510 CD denotes THP-1
T27917 503-504 . denotes .
T27916 494-503 NNS denotes monocytes
T27915 488-493 JJ denotes human
T27914 485-487 IN denotes in
T27913 474-484 NN denotes expression
T27912 469-473 NN denotes gene
T27911 463-468 CD denotes NFAT5
T27910 460-462 IN denotes of
T27909 450-459 NN denotes induction
T27908 446-449 NNP denotes MTb
T27907 442-445 IN denotes for
T27906 432-441 JJ denotes important
T27905 429-431 VBZ denotes is
T27904 423-428 NNP denotes MyD88
T27903 421-422 -RRB- denotes )
T27902 420-421 NNP denotes B
T27901 419-420 -LRB- denotes (
T27900 417-418 . denotes .
T27899 416-417 -RRB- denotes )
T27898 412-416 CD denotes 0.01
T27897 411-412 NN denotes <
T27896 410-411 JJ denotes p
T27895 408-409 , denotes ,
T27894 406-408 SYM denotes **
T27893 405-406 -LRB- denotes (
T27892 401-404 NNP denotes MTb
T27891 396-400 IN denotes with
T27890 387-395 VBN denotes infected
T27889 384-386 CC denotes or
T27888 382-383 -RRB- denotes )
T27887 378-382 CD denotes 0.05
T27886 377-378 RB denotes <
T27885 376-377 VB denotes p
T27884 374-375 , denotes ,
T27883 373-374 SYM denotes *
T27882 372-373 -LRB- denotes (
T27881 364-371 NNS denotes Pam3Cys
T27880 359-363 IN denotes with
T27879 349-358 VBN denotes incubated
T27878 344-348 VBD denotes were
T27877 338-343 NNS denotes cells
T27876 334-337 DT denotes the
T27875 329-333 WRB denotes when
T27874 319-328 VBN denotes increased
T28186 1926-1927 -RRB- denotes )
T28185 1922-1926 CD denotes 0.01
T28184 1921-1922 NN denotes <
T28183 1920-1921 JJ denotes p
T28182 1918-1919 , denotes ,
T28181 1916-1918 SYM denotes **
T28180 1914-1915 : denotes ;
T28179 1910-1914 CD denotes 0.05
T28178 1909-1910 RB denotes <
T28177 1908-1909 VB denotes p
T28176 1906-1907 , denotes ,
T28175 1905-1906 SYM denotes *
T28174 1904-1905 -LRB- denotes (
T28173 1902-1903 . denotes .
T28172 1894-1902 NNS denotes controls
T28171 1891-1893 IN denotes as
T28170 1882-1890 VBN denotes measured
T28169 1877-1881 VBD denotes were
T28168 1875-1876 , denotes ,
T28167 1865-1875 NN denotes activation
T28166 1861-1864 NNP denotes PRR
T28165 1858-1860 IN denotes by
T28164 1850-1857 VBN denotes induced
T28163 1847-1849 VB denotes be
T28162 1844-1846 TO denotes to
T28161 1838-1843 CD denotes TRAF6
T28160 1834-1837 CC denotes and
T28159 1828-1833 CD denotes IRAK1
T28158 1820-1827 VBP denotes require
T28157 1814-1819 WDT denotes which
T28156 1811-1813 IN denotes of
T28155 1806-1810 DT denotes both
T28154 1804-1805 , denotes ,
T28153 1799-1804 NNP denotes mRNAs
T28152 1794-1798 NNP denotes CD86
T28151 1790-1793 CC denotes and
T28150 1786-1789 NNP denotes TNF
T28149 1784-1785 . denotes .
T28148 1783-1784 -RRB- denotes )
T28147 1779-1783 NNS denotes bars
T28146 1774-1778 JJ denotes open
T28145 1773-1774 -LRB- denotes (
T28144 1767-1772 NNP denotes shRNA
T28143 1759-1766 NN denotes control
T28142 1748-1758 VBG denotes expressing
T28141 1742-1747 NNS denotes cells
T28140 1739-1741 TO denotes to
T28139 1730-1738 VBN denotes compared
T28138 1728-1729 -RRB- denotes )
T28137 1724-1728 NNS denotes bars
T28136 1718-1723 JJ denotes black
T28135 1717-1718 -LRB- denotes (
T28134 1711-1716 NNP denotes shRNA
T28133 1709-1710 -RRB- denotes )
T28132 1708-1709 NNP denotes D
T28131 1707-1708 -LRB- denotes (
T28130 1701-1706 CD denotes TRAF6
T28129 1698-1700 CC denotes or
T28128 1696-1697 -RRB- denotes )
T28127 1695-1696 NNP denotes C
T28126 1694-1695 -LRB- denotes (
T28125 1688-1693 NNP denotes IRAK1
T28124 1681-1687 CC denotes either
T28123 1670-1680 VBG denotes expressing
T28122 1664-1669 NNS denotes cells
T28121 1651-1663 JJ denotes MTb-infected
T28120 1647-1650 DT denotes the
T28119 1644-1646 IN denotes in
T28118 1634-1643 VBN denotes inhibited
T28117 1620-1633 RB denotes significantly
T28116 1616-1619 VBD denotes was
T28115 1605-1615 NN denotes expression
T28114 1599-1604 CD denotes NFAT5
T28113 1597-1598 . denotes .
T28112 1589-1597 VBN denotes analyzed
T28111 1585-1588 VBD denotes was
T28110 1581-1584 NNP denotes RNA
T28109 1577-1580 CC denotes and
T28108 1575-1576 , denotes ,
T28107 1574-1575 NNP denotes C
T28106 1573-1574 CD denotes °
T28105 1571-1573 CD denotes 37
T28104 1568-1570 IN denotes at
T28103 1562-1567 NNS denotes hours
T28102 1559-1561 CD denotes 16
T28101 1555-1558 IN denotes for
T28100 1544-1554 JJ denotes uninfected
T28099 1539-1543 VBD denotes left
T28098 1536-1538 CC denotes or
T28097 1528-1535 CD denotes CDC1551
T28096 1521-1527 NN denotes strain
T28095 1517-1520 NNP denotes MTb
T28094 1512-1516 IN denotes with
T28093 1503-1511 VBN denotes infected
T28092 1498-1502 VBD denotes were
T28091 1492-1497 NNS denotes Cells
T28090 1490-1491 . denotes .
T27873 305-318 RB denotes significantly
T27872 301-304 VBD denotes was
T27871 290-300 NN denotes expression
T27870 285-289 NNP denotes mRNA
T27869 279-284 CD denotes NFAT5
T27868 277-278 . denotes .
T27867 269-277 VBN denotes measured
T27866 264-268 VBD denotes were
T27865 257-263 NNS denotes levels
T27864 252-256 NNP denotes mRNA
T27863 246-251 NNP denotes NFAT5
T27848 192-193 CD denotes ∶
T27847 191-192 CD denotes 1
T27846 190-191 -LRB- denotes (
T27845 182-189 NNP denotes CDC1551
T27844 175-181 NN denotes strain
T27843 171-174 NNP denotes MTb
T27842 166-170 IN denotes with
T27841 157-165 VBN denotes infected
T27840 155-156 , denotes ,
T27839 154-155 -RRB- denotes )
T27838 152-154 NN denotes ml
T27837 151-152 NN denotes /
T27836 149-151 NN denotes µg
T27835 147-148 CD denotes 5
T27834 146-147 -LRB- denotes (
T27833 138-145 NNS denotes Pam3Cys
T27832 131-137 NN denotes ligand
T27831 117-130 JJ denotes TLR2-specific
T27830 113-116 DT denotes the
T27829 108-112 IN denotes with
T27828 98-107 VBN denotes incubated
T27827 93-97 VBD denotes were
T27826 87-92 NNS denotes cells
T27825 81-86 CD denotes THP-1
T27824 79-80 . denotes .
T27823 70-79 NNS denotes monocytes
T27822 67-69 IN denotes in
T27821 57-66 NN denotes synthesis
T27820 52-56 NNP denotes mRNA
T27819 46-51 CD denotes NFAT5
T27818 37-45 VBZ denotes enhances
T27817 23-36 RB denotes significantly
T27816 18-22 CD denotes TLR2
T27815 15-17 IN denotes of
T27814 4-14 NNP denotes Engagement
T27813 2-3 -RRB- denotes )
T27812 1-2 NNP denotes A
T27811 0-1 -LRB- denotes (
T27858 228-229 . denotes .
T27857 219-228 JJ denotes untreated
T27856 214-218 VBD denotes left
T27855 211-213 CC denotes or
T27854 209-210 , denotes ,
T27853 208-209 -RRB- denotes )
T27852 201-208 NNS denotes bacilli
T27851 200-201 VBP denotes ∶
T27850 195-200 NNS denotes cells
T27849 193-194 CD denotes 1
T27862 244-245 , denotes ,
T27861 239-244 NNS denotes hours
T27860 236-238 CD denotes 16
T27859 230-235 IN denotes After
R20198 T27811 T27814 punct (,Engagement
R20199 T27812 T27814 nmod A,Engagement
R20200 T27813 T27814 punct ),Engagement
R20201 T27814 T27818 nsubj Engagement,enhances
R20202 T27815 T27814 prep of,Engagement
R20203 T27816 T27815 pobj TLR2,of
R20204 T27817 T27818 advmod significantly,enhances
R20205 T27818 T27818 ROOT enhances,enhances
R20206 T27819 T27821 nummod NFAT5,synthesis
R20207 T27820 T27821 compound mRNA,synthesis
R20208 T27821 T27818 dobj synthesis,enhances
R20209 T27822 T27821 prep in,synthesis
R20210 T27823 T27822 pobj monocytes,in
R20211 T27824 T27818 punct .,enhances
R20212 T27825 T27826 nummod THP-1,cells
R20213 T27826 T27828 nsubjpass cells,incubated
R20214 T27827 T27828 auxpass were,incubated
R20215 T27828 T27828 ROOT incubated,incubated
R20216 T27829 T27828 prep with,incubated
R20217 T27830 T27833 det the,Pam3Cys
R20218 T27831 T27833 amod TLR2-specific,Pam3Cys
R20219 T27832 T27833 compound ligand,Pam3Cys
R20220 T27833 T27829 pobj Pam3Cys,with
R20221 T27834 T27833 punct (,Pam3Cys
R20222 T27835 T27836 nummod 5,µg
R20223 T27836 T27838 nmod µg,ml
R20224 T27837 T27838 compound /,ml
R20225 T27838 T27833 appos ml,Pam3Cys
R20226 T27839 T27833 punct ),Pam3Cys
R20227 T27840 T27828 punct ",",incubated
R20228 T27841 T27828 conj infected,incubated
R20229 T27842 T27841 prep with,infected
R20230 T27843 T27844 compound MTb,strain
R20231 T27844 T27845 compound strain,CDC1551
R20262 T27875 T27879 advmod when,incubated
R20263 T27876 T27877 det the,cells
R20264 T27877 T27879 nsubjpass cells,incubated
R20265 T27878 T27879 auxpass were,incubated
R20266 T27879 T27874 advcl incubated,increased
R20267 T27880 T27879 prep with,incubated
R20268 T27881 T27880 pobj Pam3Cys,with
R20269 T27882 T27881 punct (,Pam3Cys
R20270 T27883 T27881 appos *,Pam3Cys
R20271 T27884 T27885 punct ",",p
R20272 T27885 T27881 appos p,Pam3Cys
R20273 T27886 T27887 compound <,0.05
R20274 T27887 T27885 dobj 0.05,p
R20275 T27888 T27885 punct ),p
R20276 T27889 T27885 cc or,p
R20277 T27890 T27885 conj infected,p
R20278 T27891 T27890 prep with,infected
R20279 T27892 T27891 pobj MTb,with
R20280 T27893 T27892 punct (,MTb
R20281 T27894 T27890 punct **,infected
R20282 T27895 T27898 punct ",",0.01
R20283 T27896 T27898 compound p,0.01
R20284 T27897 T27898 compound <,0.01
R20285 T27898 T27890 npadvmod 0.01,infected
R20286 T27899 T27890 punct ),infected
R20287 T27900 T27885 punct .,p
R20288 T27901 T27904 punct (,MyD88
R20289 T27902 T27904 nmod B,MyD88
R20290 T27903 T27904 punct ),MyD88
R20291 T27904 T27905 nsubj MyD88,is
R20292 T27905 T27905 ROOT is,is
R20293 T27906 T27905 acomp important,is
R20294 T27907 T27905 prep for,is
R20295 T27908 T27909 compound MTb,induction
R20296 T27909 T27907 pobj induction,for
R20297 T27910 T27909 prep of,induction
R20298 T27911 T27913 nummod NFAT5,expression
R20299 T27912 T27913 compound gene,expression
R20300 T27913 T27910 pobj expression,of
R20301 T27914 T27913 prep in,expression
R20302 T27915 T27916 amod human,monocytes
R20303 T27916 T27914 pobj monocytes,in
R20304 T27917 T27905 punct .,is
R20305 T27918 T27919 nummod THP-1,cells
R20306 T27919 T27933 nsubjpass cells,constructed
R20307 T27920 T27922 nsubj that,express
R20308 T27921 T27922 advmod constitutively,express
R20309 T27922 T27919 relcl express,cells
R20310 T27923 T27924 compound lentivirally-delivered,shRNA
R20311 T27924 T27933 nsubjpass shRNA,constructed
R20312 T27925 T27924 acl targeting,shRNA
R20313 T27926 T27925 dobj MyD88,targeting
R20314 T27927 T27925 cc or,targeting
R20315 T27928 T27931 compound control,GFP
R20316 T27929 T27931 compound shRNA,GFP
R20317 T27930 T27931 compound targeting,GFP
R20318 T27931 T27924 conj GFP,shRNA
R20319 T27932 T27933 auxpass were,constructed
R20320 T27933 T27933 ROOT constructed,constructed
R20321 T27934 T27935 mark as,described
R20322 T27935 T27933 advcl described,constructed
R20323 T27936 T27935 prep in,described
R20324 T27937 T27936 pobj Materials,in
R20325 T27938 T27937 cc and,Materials
R20326 T27939 T27937 conj Methods,Materials
R20327 T27940 T27933 punct .,constructed
R20328 T27941 T27943 nsubjpass Cells,infected
R20329 T27942 T27943 auxpass were,infected
R20330 T27943 T27943 ROOT infected,infected
R20331 T27944 T27943 prep with,infected
R20332 T27945 T27946 compound MTb,strain
R20333 T27946 T27947 compound strain,CDC1551
R20334 T27947 T27944 pobj CDC1551,with
R20335 T27948 T27949 punct (,1
R20336 T27949 T27952 nummod 1,cells
R20337 T27950 T27952 nummod ∶,cells
R20338 T27951 T27952 nummod 1,cells
R20339 T27952 T27957 nsubj cells,left
R20340 T27953 T27954 compound ∶,bacilli
R20341 T27954 T27952 appos bacilli,cells
R20342 T27955 T27952 punct ),cells
R20343 T27956 T27952 cc or,cells
R20344 T27957 T27943 advcl left,infected
R20345 T27958 T27957 oprd uninfected,left
R20346 T27959 T27957 prep for,left
R20347 T27960 T27961 nummod 16,hours
R20348 T27961 T27959 pobj hours,for
R20349 T27962 T27957 prep at,left
R20350 T27963 T27964 nummod 37,°
R20351 T27964 T27965 nummod °,C
R20352 T27965 T27962 pobj C,at
R20353 T27966 T27957 punct ",",left
R20354 T27967 T27957 cc and,left
R20355 T27968 T27970 nsubjpass RNA,analyzed
R20356 T27969 T27970 auxpass was,analyzed
R20357 T27970 T27957 conj analyzed,left
R20358 T27971 T27970 punct .,analyzed
R20359 T27972 T27974 nummod NFAT5,levels
R20360 T27973 T27974 compound mRNA,levels
R20361 T27974 T27977 nsubjpass levels,inhibited
R20362 T27975 T27977 auxpass were,inhibited
R20363 T27976 T27977 advmod significantly,inhibited
R20364 T27977 T27977 ROOT inhibited,inhibited
R20365 T27978 T27977 prep in,inhibited
R20366 T27979 T27980 det the,cells
R20367 T27980 T27978 pobj cells,in
R20368 T27981 T27977 conj transduced,inhibited
R20369 T27982 T27981 prep with,transduced
R20370 T27983 T27984 compound MyD88-specific,shRNA
R20371 T27984 T27982 pobj shRNA,with
R20372 T27985 T27987 punct (,bars
R20373 T27986 T27987 amod black,bars
R20374 T27987 T27984 appos bars,shRNA
R20375 T27988 T27981 punct ),transduced
R20376 T27989 T27977 prep compared,inhibited
R20377 T27990 T27989 prep with,compared
R20378 T27991 T27992 det the,cells
R20379 T27992 T27990 pobj cells,with
R20380 T27993 T27992 acl transduced,cells
R20381 T27994 T27993 prep with,transduced
R20382 T27995 T27996 compound control,shRNA
R20383 T27996 T27994 pobj shRNA,with
R20384 T27997 T27996 punct (,shRNA
R20385 T27998 T27999 amod open,bars
R20386 T27999 T27996 appos bars,shRNA
R20387 T28000 T27996 punct ),shRNA
R20388 T28001 T27993 prep in,transduced
R20389 T28002 T28001 pobj both,in
R20390 T28003 T27977 punct ",",inhibited
R20391 T28004 T28005 det the,absence
R20392 T28005 T27977 dobj absence,inhibited
R20393 T28006 T28005 cc or,absence
R20394 T28007 T28005 conj presence,absence
R20395 T28008 T28005 prep of,absence
R20396 T28009 T28010 compound MTb,infection
R20397 T28010 T28008 pobj infection,of
R20398 T28011 T27977 punct .,inhibited
R20399 T28012 T28021 nsubj TNF,are
R20400 T28013 T28012 cc and,TNF
R20401 T28014 T28015 compound CD86,mRNAs
R20402 T28015 T28012 conj mRNAs,TNF
R20403 T28016 T28015 punct ",",mRNAs
R20404 T28017 T28018 det the,expression
R20405 T28018 T28015 appos expression,mRNAs
R20406 T28019 T28018 prep of,expression
R20407 T28020 T28019 pobj which,of
R20408 T28021 T28021 ROOT are,are
R20409 T28022 T28021 acomp MyD88-dependent,are
R20410 T28023 T28021 cc and,are
R20411 T28024 T28034 punct -,measured
R20412 T28025 T28034 advcl independent,measured
R20413 T28026 T28025 punct ",",independent
R20414 T28027 T28025 advmod respectively,independent
R20415 T28028 T28034 punct ",",measured
R20416 T28029 T28034 prep during,measured
R20417 T28030 T28031 compound MTb,infection
R20418 T28031 T28029 pobj infection,during
R20419 T28032 T28034 punct ",",measured
R20420 T28033 T28034 auxpass were,measured
R20421 T28034 T28021 conj measured,are
R20422 T28035 T28034 prep as,measured
R20423 T28036 T28035 pobj controls,as
R20424 T28037 T28034 punct .,measured
R20425 T28038 T28043 punct (,IRAK1
R20426 T28039 T28043 nmod C,IRAK1
R20427 T28040 T28039 punct ",",C
R20428 T28041 T28039 appos D,C
R20429 T28042 T28043 punct ),IRAK1
R20430 T28043 T28047 nsubjpass IRAK1,required
R20431 T28044 T28043 cc and,IRAK1
R20432 T28045 T28043 conj TRAF6,IRAK1
R20433 T28046 T28047 auxpass are,required
R20434 T28047 T28047 ROOT required,required
R20435 T28048 T28047 prep for,required
R20436 T28049 T28050 compound MTb,induction
R20437 T28050 T28048 pobj induction,for
R20438 T28051 T28050 prep of,induction
R20439 T28052 T28054 nummod NFAT5,expression
R20440 T28053 T28054 compound gene,expression
R20441 T28054 T28051 pobj expression,of
R20442 T28055 T28050 prep in,induction
R20443 T28056 T28057 amod human,monocytes
R20444 T28057 T28055 pobj monocytes,in
R20445 T28058 T28047 punct .,required
R20446 T28059 T28060 nummod THP-1,cells
R20447 T28060 T28071 nsubjpass cells,constructed
R20448 T28061 T28063 nsubj that,express
R20449 T28062 T28063 advmod constitutively,express
R20450 T28063 T28060 relcl express,cells
R20451 T28064 T28065 compound lentivirally-delivered,IRAK1
R20452 T28065 T28063 dobj IRAK1,express
R20453 T28066 T28065 punct -,IRAK1
R20454 T28067 T28065 cc or,IRAK1
R20455 T28068 T28069 amod TRAF6-specific,shRNA
R20456 T28069 T28071 nsubjpass shRNA,constructed
R20457 T28070 T28071 auxpass were,constructed
R20458 T28071 T28071 ROOT constructed,constructed
R20459 T28072 T28073 mark as,described
R20460 T28073 T28071 advcl described,constructed
R20461 T28074 T28073 prep in,described
R20462 T28075 T28074 pobj Materials,in
R20463 T28076 T28075 cc and,Materials
R20464 T28077 T28075 conj Methods,Materials
R20465 T28078 T28071 punct .,constructed
R20466 T28079 T28080 nummod THP-1,cells
R20467 T28080 T28085 nsubjpass cells,used
R20468 T28081 T28080 acl expressing,cells
R20469 T28082 T28083 compound control,shRNA
R20470 T28083 T28081 dobj shRNA,expressing
R20471 T28084 T28085 auxpass were,used
R20472 T28085 T28085 ROOT used,used
R20473 T28086 T28087 mark as,described
R20474 T28087 T28085 advcl described,used
R20475 T28088 T28087 prep in,described
R20476 T28089 T28088 pobj 7B,in
R20477 T28090 T28085 punct .,used
R20478 T28091 T28093 nsubjpass Cells,infected
R20479 T28092 T28093 auxpass were,infected
R20480 T28093 T28093 ROOT infected,infected
R20481 T28094 T28093 prep with,infected
R20482 T28095 T28096 compound MTb,strain
R20483 T28096 T28094 pobj strain,with
R20484 T28097 T28096 nummod CDC1551,strain
R20485 T28098 T28093 cc or,infected
R20486 T28099 T28093 conj left,infected
R20487 T28100 T28099 oprd uninfected,left
R20488 T28101 T28099 prep for,left
R20489 T28102 T28103 nummod 16,hours
R20490 T28103 T28101 pobj hours,for
R20491 T28104 T28099 prep at,left
R20492 T28105 T28106 nummod 37,°
R20493 T28106 T28107 nummod °,C
R20494 T28107 T28104 pobj C,at
R20495 T28108 T28099 punct ",",left
R20496 T28109 T28099 cc and,left
R20497 T28110 T28112 nsubjpass RNA,analyzed
R20498 T28111 T28112 auxpass was,analyzed
R20499 T28112 T28099 conj analyzed,left
R20500 T28113 T28112 punct .,analyzed
R20501 T28114 T28115 nummod NFAT5,expression
R20502 T28115 T28118 nsubjpass expression,inhibited
R20503 T28116 T28118 auxpass was,inhibited
R20504 T28117 T28118 advmod significantly,inhibited
R20505 T28118 T28118 ROOT inhibited,inhibited
R20506 T28119 T28118 prep in,inhibited
R20507 T28120 T28122 det the,cells
R20508 T28121 T28122 amod MTb-infected,cells
R20548 T28161 T28159 conj TRAF6,IRAK1
R20549 T28162 T28164 aux to,induced
R20550 T28163 T28164 auxpass be,induced
R20551 T28164 T28158 xcomp induced,require
R20552 T28165 T28164 agent by,induced
R20553 T28166 T28167 compound PRR,activation
R20554 T28167 T28165 pobj activation,by
R20555 T28168 T28170 punct ",",measured
R20556 T28169 T28170 auxpass were,measured
R20557 T28170 T28158 conj measured,require
R20558 T28171 T28170 prep as,measured
R20559 T28172 T28171 pobj controls,as
R20560 T28173 T28158 punct .,require
R20561 T28174 T28177 punct (,p
R20562 T28175 T28177 punct *,p
R20563 T28176 T28177 punct ",",p
R20564 T28177 T28177 ROOT p,p
R20565 T28178 T28177 advmod <,p
R20566 T28179 T28177 npadvmod 0.05,p
R20567 T28180 T28186 punct ;,)
R20568 T28181 T28186 punct **,)
R20569 T28182 T28186 punct ",",)
R20570 T28183 T28186 nmod p,)
R20571 T28184 T28185 compound <,0.01
R20572 T28185 T28183 npadvmod 0.01,p
R20573 T28186 T28177 punct ),p
R20574 T28187 T28177 punct .,p
R20232 T27845 T27842 pobj CDC1551,with
R20233 T27846 T27847 punct (,1
R20234 T27847 T27850 nummod 1,cells
R20235 T27848 T27850 nummod ∶,cells
R20236 T27849 T27850 nummod 1,cells
R20237 T27850 T27856 nsubj cells,left
R20238 T27851 T27852 compound ∶,bacilli
R20239 T27852 T27850 appos bacilli,cells
R20240 T27853 T27850 punct ),cells
R20241 T27854 T27850 punct ",",cells
R20242 T27855 T27850 cc or,cells
R20243 T27856 T27828 conj left,incubated
R20244 T27857 T27856 oprd untreated,left
R20245 T27858 T27856 punct .,left
R20246 T27859 T27867 prep After,measured
R20247 T27860 T27861 nummod 16,hours
R20248 T27861 T27859 pobj hours,After
R20249 T27862 T27867 punct ",",measured
R20250 T27863 T27864 compound NFAT5,mRNA
R20251 T27864 T27865 compound mRNA,levels
R20252 T27865 T27867 nsubjpass levels,measured
R20253 T27866 T27867 auxpass were,measured
R20254 T27867 T27867 ROOT measured,measured
R20255 T27868 T27867 punct .,measured
R20256 T27869 T27871 nummod NFAT5,expression
R20257 T27870 T27871 compound mRNA,expression
R20258 T27871 T27874 nsubjpass expression,increased
R20259 T27872 T27874 auxpass was,increased
R20260 T27873 T27874 advmod significantly,increased
R20261 T27874 T27874 ROOT increased,increased
R20509 T28122 T28119 pobj cells,in
R20510 T28123 T28122 acl expressing,cells
R20511 T28124 T28139 preconj either,compared
R20512 T28125 T28139 nsubj IRAK1,compared
R20513 T28126 T28125 punct (,IRAK1
R20514 T28127 T28125 appos C,IRAK1
R20515 T28128 T28125 punct ),IRAK1
R20516 T28129 T28125 cc or,IRAK1
R20517 T28130 T28125 conj TRAF6,IRAK1
R20518 T28131 T28134 punct (,shRNA
R20519 T28132 T28134 nmod D,shRNA
R20520 T28133 T28134 punct ),shRNA
R20521 T28134 T28134 ROOT shRNA,shRNA
R20522 T28135 T28137 punct (,bars
R20523 T28136 T28137 amod black,bars
R20524 T28137 T28134 appos bars,shRNA
R20525 T28138 T28134 punct ),shRNA
R20526 T28139 T28118 conj compared,inhibited
R20527 T28140 T28139 prep to,compared
R20528 T28141 T28140 pobj cells,to
R20529 T28142 T28141 acl expressing,cells
R20530 T28143 T28144 compound control,shRNA
R20531 T28144 T28142 dobj shRNA,expressing
R20532 T28145 T28144 punct (,shRNA
R20533 T28146 T28147 amod open,bars
R20534 T28147 T28144 appos bars,shRNA
R20535 T28148 T28144 punct ),shRNA
R20536 T28149 T28118 punct .,inhibited
R20537 T28150 T28158 nsubj TNF,require
R20538 T28151 T28150 cc and,TNF
R20539 T28152 T28153 compound CD86,mRNAs
R20540 T28153 T28150 conj mRNAs,TNF
R20541 T28154 T28153 punct ",",mRNAs
R20542 T28155 T28158 nsubj both,require
R20543 T28156 T28155 prep of,both
R20544 T28157 T28156 pobj which,of
R20545 T28158 T28158 ROOT require,require
R20546 T28159 T28158 dobj IRAK1,require
R20547 T28160 T28159 cc and,IRAK1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T27737 1820-1827 Positive_regulation denotes require
T27736 1820-1827 Positive_regulation denotes require
T27735 1861-1864 Protein denotes PRR
T27734 1838-1843 Protein denotes TRAF6
T27733 1828-1833 Protein denotes IRAK1
T27732 1794-1804 Protein denotes CD86 mRNAs
T27731 1786-1789 Protein denotes TNF
T27730 1670-1680 Gene_expression denotes expressing
T27729 1670-1680 Gene_expression denotes expressing
T27728 1634-1643 Negative_regulation denotes inhibited
T27727 1605-1615 Gene_expression denotes expression
T27726 1701-1706 Protein denotes TRAF6
T27725 1688-1693 Protein denotes IRAK1
T27724 1599-1604 Protein denotes NFAT5
T27723 1307-1314 Gene_expression denotes express
T27722 1348-1353 Protein denotes TRAF6
T27721 1338-1343 Protein denotes IRAK1
T27720 1203-1211 Positive_regulation denotes required
T27719 1203-1211 Positive_regulation denotes required
T27718 1220-1229 Positive_regulation denotes induction
T27717 1244-1254 Gene_expression denotes expression
T27716 1233-1243 Protein denotes NFAT5 gene
T27715 1193-1198 Protein denotes TRAF6
T27714 1183-1188 Protein denotes IRAK1
T27713 1085-1094 Positive_regulation denotes dependent
T27712 1085-1094 Positive_regulation denotes dependent
T27711 1055-1065 Gene_expression denotes expression
T27710 1055-1065 Gene_expression denotes expression
T27709 1079-1084 Protein denotes MyD88
T27708 1039-1049 Protein denotes CD86 mRNAs
T27707 1031-1034 Protein denotes TNF
T27706 841-850 Negative_regulation denotes inhibited
T27705 880-885 Protein denotes MyD88
T27704 804-814 Protein denotes NFAT5 mRNA
T27703 537-544 Gene_expression denotes express
T27702 537-544 Gene_expression denotes express
T27701 617-620 Protein denotes GFP
T27700 584-589 Protein denotes MyD88
T27699 450-459 Positive_regulation denotes induction
T27698 474-484 Gene_expression denotes expression
T27697 463-473 Protein denotes NFAT5 gene
T27696 423-428 Protein denotes MyD88
T27695 319-328 Positive_regulation denotes increased
T27694 290-300 Gene_expression denotes expression
T27693 279-289 Protein denotes NFAT5 mRNA
T27692 246-256 Protein denotes NFAT5 mRNA
T27691 37-45 Positive_regulation denotes enhances
T27690 57-66 Gene_expression denotes synthesis
T27689 46-56 Protein denotes NFAT5 mRNA
T27739 1850-1857 Positive_regulation denotes induced
T27738 1865-1875 Positive_regulation denotes activation
R20120 T27689 T27690 themeOf NFAT5 mRNA,synthesis
R20121 T27690 T27691 themeOf synthesis,enhances
R20122 T27693 T27694 themeOf NFAT5 mRNA,expression
R20123 T27694 T27695 themeOf expression,increased
R20124 T27697 T27698 themeOf NFAT5 gene,expression
R20125 T27698 T27699 themeOf expression,induction
R20126 T27700 T27702 themeOf MyD88,express
R20127 T27701 T27703 themeOf GFP,express
R20128 T27704 T27706 themeOf NFAT5 mRNA,inhibited
R20129 T27707 T27710 themeOf TNF,expression
R20130 T27708 T27711 themeOf CD86 mRNAs,expression
R20131 T27709 T27712 causeOf MyD88,dependent
R20132 T27709 T27713 causeOf MyD88,dependent
R20133 T27710 T27712 themeOf expression,dependent
R20134 T27711 T27713 themeOf expression,dependent
R20135 T27714 T27719 causeOf IRAK1,required
R20136 T27715 T27720 causeOf TRAF6,required
R20137 T27716 T27717 themeOf NFAT5 gene,expression
R20138 T27717 T27718 themeOf expression,induction
R20139 T27718 T27719 themeOf induction,required
R20140 T27718 T27720 themeOf induction,required
R20141 T27721 T27723 themeOf IRAK1,express
R20142 T27724 T27727 themeOf NFAT5,expression
R20143 T27725 T27729 themeOf IRAK1,expressing
R20144 T27726 T27730 themeOf TRAF6,expressing
R20145 T27727 T27728 themeOf expression,inhibited
R20146 T27733 T27736 themeOf IRAK1,require
R20147 T27734 T27737 themeOf TRAF6,require
R20148 T27735 T27738 themeOf PRR,activation
R20149 T27738 T27739 themeOf activation,induced

testone

Id Subject Object Predicate Lexical cue
T26880 1850-1857 Positive_regulation denotes induced
T26879 1799-1804 Transcription denotes mRNAs
T26878 1670-1680 Gene_expression denotes expressing
T26877 1634-1643 Negative_regulation denotes inhibited
T26876 1605-1615 Gene_expression denotes expression
T26875 1307-1314 Gene_expression denotes express
T26874 1244-1254 Gene_expression denotes expression
T26873 1220-1229 Positive_regulation denotes induction
T26872 474-484 Gene_expression denotes expression
T26871 450-459 Positive_regulation denotes induction
T26870 285-300 Transcription denotes mRNA expression
T26869 37-45 Positive_regulation denotes enhances
T26868 4-14 Binding denotes Engagement
T26865 1838-1843 Protein denotes TRAF6
T26864 1828-1833 Protein denotes IRAK1
T26863 1794-1798 Protein denotes CD86
T26862 1786-1789 Protein denotes TNF
T26861 1767-1772 Protein denotes shRNA
T26860 1701-1706 Protein denotes TRAF6
T26859 1688-1693 Protein denotes IRAK1
T26858 1599-1604 Protein denotes NFAT5
T26857 1456-1461 Protein denotes shRNA
T26856 1348-1353 Protein denotes TRAF6
T26855 1338-1343 Protein denotes IRAK1
T26854 1233-1238 Protein denotes NFAT5
T26853 1193-1198 Protein denotes TRAF6
T26852 1183-1188 Protein denotes IRAK1
T26851 1079-1084 Protein denotes MyD88
T26850 1039-1043 Protein denotes CD86
T26849 1031-1034 Protein denotes TNF
T26848 880-885 Protein denotes MyD88
T26847 804-809 Protein denotes NFAT5
T26846 617-620 Protein denotes GFP
T26845 584-589 Protein denotes MyD88
T26844 463-468 Protein denotes NFAT5
T26843 423-428 Protein denotes MyD88
T26842 279-284 Protein denotes NFAT5
T26841 246-251 Protein denotes NFAT5
T26840 117-121 Protein denotes TLR2
T26839 46-51 Protein denotes NFAT5
T26838 18-22 Protein denotes TLR2
R19571 T26868 T26869 causeOf Engagement,enhances
R19572 T26872 T26871 themeOf expression,induction
R19573 T26874 T26873 themeOf expression,induction
R19574 T26876 T26877 themeOf expression,inhibited
R19575 T26878 T26877 themeOf expressing,inhibited
R19554 T26838 T26868 themeOf TLR2,Engagement
R19555 T26842 T26870 themeOf NFAT5,mRNA expression
R19556 T26843 T26871 causeOf MyD88,induction
R19557 T26844 T26872 themeOf NFAT5,expression
R19558 T26852 T26873 causeOf IRAK1,induction
R19559 T26854 T26874 themeOf NFAT5,expression
R19560 T26855 T26875 themeOf IRAK1,express
R19561 T26856 T26875 themeOf TRAF6,express
R19562 T26858 T26876 themeOf NFAT5,expression
R19563 T26859 T26878 themeOf IRAK1,expressing
R19564 T26860 T26878 themeOf TRAF6,expressing
R19565 T26861 T26878 themeOf shRNA,expressing
R19566 T26862 T26879 themeOf TNF,mRNAs
R19567 T26863 T26879 themeOf CD86,mRNAs
R19568 T26864 T26880 themeOf IRAK1,induced
R19569 T26865 T26880 themeOf TRAF6,induced
R19576 T26879 T26880 themeOf mRNAs,induced

test3

Id Subject Object Predicate Lexical cue
T26958 1850-1857 Positive_regulation denotes induced
T26957 1838-1843 Protein denotes TRAF6
T26956 1828-1833 Protein denotes IRAK1
T26955 1794-1798 Protein denotes CD86
T26954 1786-1789 Protein denotes TNF
T26953 1767-1772 Protein denotes shRNA
T26952 1701-1706 Protein denotes TRAF6
T26951 1688-1693 Protein denotes IRAK1
T26950 1670-1680 Gene_expression denotes expressing
T26949 1634-1643 Negative_regulation denotes inhibited
T26948 1605-1615 Gene_expression denotes expression
T26947 1599-1604 Protein denotes NFAT5
T26946 1456-1461 Protein denotes shRNA
T26945 1348-1353 Protein denotes TRAF6
T26944 1338-1343 Protein denotes IRAK1
T26943 1307-1314 Gene_expression denotes express
T26942 1244-1254 Gene_expression denotes expression
T26941 1233-1238 Protein denotes NFAT5
T26940 1220-1229 Positive_regulation denotes induction
T26939 1203-1211 Positive_regulation denotes required
T26938 1193-1198 Protein denotes TRAF6
T26937 1183-1188 Protein denotes IRAK1
T26936 1085-1094 Regulation denotes dependent
T26935 1079-1084 Protein denotes MyD88
T26934 1039-1043 Protein denotes CD86
T26933 1031-1034 Protein denotes TNF
T26932 880-885 Protein denotes MyD88
T26931 804-809 Protein denotes NFAT5
T26930 617-620 Protein denotes GFP
T26929 584-589 Protein denotes MyD88
T26928 474-484 Gene_expression denotes expression
T26927 463-468 Protein denotes NFAT5
T26926 450-459 Positive_regulation denotes induction
T26925 423-428 Protein denotes MyD88
T26924 319-328 Positive_regulation denotes increased
T26923 285-300 Transcription denotes mRNA expression
T26922 279-284 Protein denotes NFAT5
T26921 246-251 Protein denotes NFAT5
T26920 117-121 Protein denotes TLR2
T26919 57-66 Transcription denotes synthesis
T26918 52-56 Transcription denotes mRNA
T26917 46-51 Protein denotes NFAT5
T26916 18-22 Protein denotes TLR2
T26915 4-14 Binding denotes Engagement
T26910 1838-1843 Protein denotes TRAF6
T26909 1828-1833 Protein denotes IRAK1
T26908 1794-1798 Protein denotes CD86
T26907 1786-1789 Protein denotes TNF
T26906 1767-1772 Protein denotes shRNA
T26905 1701-1706 Protein denotes TRAF6
T26904 1688-1693 Protein denotes IRAK1
T26903 1599-1604 Protein denotes NFAT5
T26902 1456-1461 Protein denotes shRNA
T26901 1348-1353 Protein denotes TRAF6
T26900 1338-1343 Protein denotes IRAK1
T26899 1233-1238 Protein denotes NFAT5
T26898 1193-1198 Protein denotes TRAF6
T26897 1183-1188 Protein denotes IRAK1
T26896 1079-1084 Protein denotes MyD88
T26895 1039-1043 Protein denotes CD86
T26894 1031-1034 Protein denotes TNF
T26893 880-885 Protein denotes MyD88
T26892 804-809 Protein denotes NFAT5
T26891 617-620 Protein denotes GFP
T26890 584-589 Protein denotes MyD88
T26889 463-468 Protein denotes NFAT5
T26888 423-428 Protein denotes MyD88
T26887 279-284 Protein denotes NFAT5
T26886 246-251 Protein denotes NFAT5
T26885 117-121 Protein denotes TLR2
T26884 46-51 Protein denotes NFAT5
T26883 18-22 Protein denotes TLR2
R19579 T26916 T26915 themeOf TLR2,Engagement
R19580 T26922 T26923 themeOf NFAT5,mRNA expression
R19581 T26923 T26924 themeOf mRNA expression,increased
R19582 T26925 T26926 causeOf MyD88,induction
R19583 T26927 T26928 themeOf NFAT5,expression
R19584 T26928 T26926 themeOf expression,induction
R19585 T26937 T26939 causeOf IRAK1,required
R19586 T26938 T26939 causeOf TRAF6,required
R19587 T26940 T26939 themeOf induction,required
R19588 T26941 T26942 themeOf NFAT5,expression
R19589 T26942 T26940 themeOf expression,induction
R19590 T26944 T26943 themeOf IRAK1,express
R19591 T26945 T26943 themeOf TRAF6,express
R19592 T26947 T26948 themeOf NFAT5,expression
R19593 T26948 T26949 themeOf expression,inhibited
R19594 T26950 T26949 causeOf expressing,inhibited
R19595 T26951 T26950 themeOf IRAK1,expressing
R19596 T26951 T26949 causeOf IRAK1,inhibited
R19597 T26952 T26950 themeOf TRAF6,expressing
R19598 T26952 T26949 causeOf TRAF6,inhibited
R19599 T26953 T26950 themeOf shRNA,expressing
R19600 T26953 T26949 causeOf shRNA,inhibited
R19601 T26956 T26958 themeOf IRAK1,induced
R19602 T26957 T26958 themeOf TRAF6,induced