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PMC:3320587 / 41912-43992 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27509 2078-2079 -RRB- denotes )
T27508 2074-2078 CD denotes 0.01
T27507 2073-2074 SYM denotes <
T27506 2072-2073 NN denotes p
T27505 2070-2071 -COMMA- denotes ,
T27504 2068-2070 SYM denotes **
T27503 2066-2067 -COLON- denotes ;
T27502 2062-2066 CD denotes 0.05
T27501 2061-2062 SYM denotes <
T27500 2060-2061 NN denotes p
T27499 2058-2059 -COMMA- denotes ,
T27498 2057-2058 SYM denotes *
T27497 2056-2057 -LRB- denotes (
T27496 2046-2055 NN denotes controls.
T27495 2043-2045 IN denotes as
T27494 2034-2042 VB denotes measured
T27493 2029-2033 VB denotes were
T27492 2027-2028 -COMMA- denotes ,
T27491 2017-2027 NN denotes activation
T27490 2013-2016 NN denotes PRR
T27489 2010-2012 IN denotes by
T27488 2002-2009 VB denotes induced
T27487 1999-2001 VB denotes be
T27486 1996-1998 TO denotes to
T27485 1990-1995 NN denotes TRAF6
T27484 1986-1989 CC denotes and
T27483 1980-1985 NN denotes IRAK1
T27482 1972-1979 VB denotes require
T27481 1966-1971 WDT denotes which
T27480 1963-1965 IN denotes of
T27479 1958-1962 DT denotes both
T27478 1956-1957 -COMMA- denotes ,
T27477 1951-1956 NN denotes mRNAs
T27476 1946-1950 NN denotes CD86
T27475 1942-1945 CC denotes and
T27474 1938-1941 NN denotes TNF
T27473 1935-1936 -RRB- denotes )
T27472 1931-1935 NN denotes bars
T27471 1926-1930 JJ denotes open
T27470 1925-1926 -LRB- denotes (
T27469 1919-1924 NN denotes shRNA
T27468 1911-1918 NN denotes control
T27467 1900-1910 VB denotes expressing
T27466 1894-1899 NN denotes cells
T27465 1891-1893 TO denotes to
T27464 1882-1890 VB denotes compared
T27463 1880-1881 -RRB- denotes )
T27462 1876-1880 NN denotes bars
T27461 1870-1875 JJ denotes black
T27460 1869-1870 -LRB- denotes (
T27459 1863-1868 NN denotes shRNA
T27458 1861-1862 -RRB- denotes )
T27457 1860-1861 NN denotes D
T27456 1859-1860 -LRB- denotes (
T27455 1853-1858 NN denotes TRAF6
T27454 1850-1852 CC denotes or
T27453 1848-1849 -RRB- denotes )
T27452 1847-1848 NN denotes C
T27451 1846-1847 -LRB- denotes (
T27450 1840-1845 NN denotes IRAK1
T27449 1833-1839 CC denotes either
T27448 1822-1832 VB denotes expressing
T27447 1816-1821 NN denotes cells
T27446 1803-1815 JJ denotes MTb-infected
T27445 1799-1802 DT denotes the
T27444 1796-1798 IN denotes in
T27443 1786-1795 VB denotes inhibited
T27442 1772-1785 RB denotes significantly
T27441 1768-1771 VB denotes was
T27440 1757-1767 NN denotes expression
T27439 1751-1756 NN denotes NFAT5
T27438 1741-1749 VB denotes analyzed
T27437 1737-1740 VB denotes was
T27436 1733-1736 NN denotes RNA
T27435 1729-1732 CC denotes and
T27434 1727-1728 -COMMA- denotes ,
T27433 1723-1727 NN denotes 37°C
T27432 1720-1722 IN denotes at
T27431 1714-1719 NN denotes hours
T27430 1711-1713 CD denotes 16
T27429 1707-1710 IN denotes for
T27428 1696-1706 JJ denotes uninfected
T27427 1691-1695 VB denotes left
T27426 1688-1690 CC denotes or
T27425 1680-1687 NN denotes CDC1551
T27424 1673-1679 NN denotes strain
T27423 1669-1672 NN denotes MTb
T27422 1664-1668 IN denotes with
T27421 1655-1663 VB denotes infected
T27420 1650-1654 VB denotes were
T27419 1644-1649 NN denotes Cells
T27418 1640-1642 NN denotes 7B
T27417 1637-1639 IN denotes in
T27416 1627-1636 VB denotes described
T27415 1624-1626 IN denotes as
T27414 1619-1623 VB denotes used
T27413 1614-1618 VB denotes were
T27412 1608-1613 NN denotes shRNA
T27411 1600-1607 NN denotes control
T27410 1589-1599 VB denotes expressing
T27409 1583-1588 NN denotes cells
T27408 1577-1582 NN denotes THP-1
T27407 1568-1576 NN denotes Methods.
T27406 1564-1567 CC denotes and
T27405 1554-1563 NNP denotes Materials
T27404 1551-1553 IN denotes in
T27403 1541-1550 VB denotes described
T27402 1538-1540 IN denotes as
T27401 1526-1537 VB denotes constructed
T27400 1521-1525 VB denotes were
T27399 1515-1520 NN denotes shRNA
T27398 1500-1514 JJ denotes TRAF6-specific
T27397 1497-1499 CC denotes or
T27396 1490-1496 NN denotes IRAK1-
T27395 1467-1489 JJ denotes lentivirally-delivered
T27394 1459-1466 VB denotes express
T27393 1444-1458 RB denotes constitutively
T27392 1439-1443 WDT denotes that
T27391 1433-1438 NN denotes cells
T27390 1427-1432 NN denotes THP-1
T27389 1416-1425 NN denotes monocytes
T27388 1410-1415 JJ denotes human
T27387 1407-1409 IN denotes in
T27386 1396-1406 NN denotes expression
T27385 1391-1395 NN denotes gene
T27384 1385-1390 NN denotes NFAT5
T27383 1382-1384 IN denotes of
T27382 1372-1381 NN denotes induction
T27381 1368-1371 NN denotes MTb
T27380 1364-1367 IN denotes for
T27379 1355-1363 VB denotes required
T27378 1351-1354 VB denotes are
T27377 1345-1350 NN denotes TRAF6
T27376 1341-1344 CC denotes and
T27375 1335-1340 NN denotes IRAK1
T27374 1333-1334 -RRB- denotes )
T27373 1332-1333 NN denotes D
T27372 1330-1331 -COMMA- denotes ,
T27371 1329-1330 NN denotes C
T27370 1328-1329 -LRB- denotes (
T27369 1318-1327 NN denotes controls.
T27368 1315-1317 IN denotes as
T27367 1306-1314 VB denotes measured
T27366 1301-1305 VB denotes were
T27365 1299-1300 -COMMA- denotes ,
T27364 1290-1299 NN denotes infection
T27363 1286-1289 NN denotes MTb
T27362 1279-1285 IN denotes during
T27361 1277-1278 -COMMA- denotes ,
T27360 1265-1277 RB denotes respectively
T27359 1263-1264 -COMMA- denotes ,
T27358 1251-1263 JJ denotes -independent
T27357 1247-1250 CC denotes and
T27356 1231-1246 JJ denotes MyD88-dependent
T27355 1227-1230 VB denotes are
T27354 1221-1226 WDT denotes which
T27353 1218-1220 IN denotes of
T27352 1207-1217 NN denotes expression
T27351 1203-1206 DT denotes the
T27215 437-441 NN denotes mRNA
T27214 431-436 NN denotes NFAT5
T27213 421-429 VB denotes measured
T27212 416-420 VB denotes were
T27211 409-415 NN denotes levels
T27210 404-408 NN denotes mRNA
T27209 398-403 NN denotes NFAT5
T27208 396-397 -COMMA- denotes ,
T27207 391-396 NN denotes hours
T27206 388-390 CD denotes 16
T27205 382-387 IN denotes After
T27204 371-380 JJ denotes untreated
T27203 366-370 VB denotes left
T27202 363-365 CC denotes or
T27201 361-362 -COMMA- denotes ,
T27200 360-361 -RRB- denotes )
T27199 347-360 NN denotes cells∶bacilli
T27198 343-346 CD denotes 1∶1
T27197 342-343 -LRB- denotes (
T27196 334-341 NN denotes CDC1551
T27195 327-333 NN denotes strain
T27194 323-326 NN denotes MTb
T27193 318-322 IN denotes with
T27192 309-317 VB denotes infected
T27191 307-308 -COMMA- denotes ,
T27190 306-307 -RRB- denotes )
T27189 301-306 NN denotes µg/ml
T27188 299-300 CD denotes 5
T27187 298-299 -LRB- denotes (
T27186 290-297 NN denotes Pam3Cys
T27185 283-289 NN denotes ligand
T27184 269-282 JJ denotes TLR2-specific
T27183 265-268 DT denotes the
T27182 260-264 IN denotes with
T27181 250-259 VB denotes incubated
T27180 245-249 VB denotes were
T27179 239-244 NN denotes cells
T27178 233-238 NN denotes THP-1
T27177 222-231 NN denotes monocytes
T27176 219-221 IN denotes in
T27175 209-218 NN denotes synthesis
T27174 204-208 NN denotes mRNA
T27173 198-203 NN denotes NFAT5
T27172 189-197 VB denotes enhances
T27171 175-188 RB denotes significantly
T27170 170-174 NN denotes TLR2
T27169 167-169 IN denotes of
T27168 156-166 NN denotes Engagement
T27167 154-155 -RRB- denotes )
T27166 153-154 NN denotes A
T27165 152-153 -LRB- denotes (
T27164 141-150 NN denotes monocytes
T27163 135-140 JJ denotes human
T27162 132-134 IN denotes in
T27161 121-131 NN denotes expression
T27160 115-120 NN denotes NFAT5
T27159 112-114 IN denotes of
T27158 102-111 NN denotes induction
T27157 98-101 NN denotes MTb
T27156 94-97 IN denotes for
T27155 84-93 JJ denotes important
T27154 81-83 VB denotes is
T27153 73-80 NN denotes cascade
T27152 63-72 NN denotes signaling
T27151 48-62 JJ denotes MyD88-mediated
T27150 44-47 DT denotes The
T27350 1201-1202 -COMMA- denotes ,
T27349 1196-1201 NN denotes mRNAs
T27348 1191-1195 NN denotes CD86
T27347 1187-1190 CC denotes and
T27346 1183-1186 NN denotes TNF
T27345 1172-1181 NN denotes infection
T27344 1168-1171 NN denotes MTb
T27343 1165-1167 IN denotes of
T27342 1156-1164 NN denotes presence
T27341 1153-1155 CC denotes or
T27340 1145-1152 NN denotes absence
T27339 1141-1144 DT denotes the
T27338 1139-1140 -COMMA- denotes ,
T27337 1135-1139 CC denotes both
T27336 1132-1134 IN denotes in
T27335 1130-1131 -RRB- denotes )
T27334 1126-1130 NN denotes bars
T27333 1121-1125 JJ denotes open
T27332 1120-1121 -LRB- denotes (
T27331 1114-1119 NN denotes shRNA
T27330 1106-1113 NN denotes control
T27329 1101-1105 IN denotes with
T27328 1090-1100 VB denotes transduced
T27327 1084-1089 NN denotes cells
T27326 1080-1083 DT denotes the
T27325 1075-1079 IN denotes with
T27324 1066-1074 VB denotes compared
T27323 1064-1065 -RRB- denotes )
T27322 1060-1064 NN denotes bars
T27321 1054-1059 JJ denotes black
T27320 1053-1054 -LRB- denotes (
T27319 1047-1052 NN denotes shRNA
T27318 1032-1046 JJ denotes MyD88-specific
T27317 1027-1031 IN denotes with
T27316 1016-1026 VB denotes transduced
T27315 1010-1015 NN denotes cells
T27314 1006-1009 DT denotes the
T27313 1003-1005 IN denotes in
T27312 993-1002 VB denotes inhibited
T27311 979-992 RB denotes significantly
T27310 974-978 VB denotes were
T27309 967-973 NN denotes levels
T27308 962-966 NN denotes mRNA
T27307 956-961 NN denotes NFAT5
T27306 946-954 VB denotes analyzed
T27305 942-945 VB denotes was
T27304 938-941 NN denotes RNA
T27303 934-937 CC denotes and
T27302 932-933 -COMMA- denotes ,
T27301 928-932 NN denotes 37°C
T27300 925-927 IN denotes at
T27299 919-924 NN denotes hours
T27298 916-918 CD denotes 16
T27297 912-915 IN denotes for
T27296 901-911 JJ denotes uninfected
T27295 896-900 VB denotes left
T27294 893-895 CC denotes or
T27293 891-892 -RRB- denotes )
T27292 878-891 NN denotes cells∶bacilli
T27291 874-877 CD denotes 1∶1
T27290 873-874 -LRB- denotes (
T27289 865-872 NN denotes CDC1551
T27288 858-864 NN denotes strain
T27287 854-857 NN denotes MTb
T27286 849-853 IN denotes with
T27285 840-848 VB denotes infected
T27284 835-839 VB denotes were
T27283 829-834 NNP denotes Cells
T27282 820-828 NNP denotes Methods.
T27281 816-819 CC denotes and
T27280 806-815 NNP denotes Materials
T27279 803-805 IN denotes in
T27278 793-802 VB denotes described
T27277 790-792 IN denotes as
T27276 778-789 VB denotes constructed
T27275 773-777 VB denotes were
T27274 769-772 NN denotes GFP
T27273 759-768 VB denotes targeting
T27272 753-758 NN denotes shRNA
T27271 745-752 NN denotes control
T27270 742-744 CC denotes or
T27269 736-741 NN denotes MyD88
T27268 726-735 VB denotes targeting
T27267 720-725 NN denotes shRNA
T27266 697-719 JJ denotes lentivirally-delivered
T27265 689-696 VB denotes express
T27264 674-688 RB denotes constitutively
T27263 669-673 WDT denotes that
T27262 663-668 NN denotes cells
T27261 657-662 NN denotes THP-1
T27260 637-646 NN denotes in human
T27259 631-636 JJ denotes ssion
T27258 629-631 IN denotes re
T27257 619-629 NN denotes 5 gene exp
T27256 615-619 NN denotes NFAT
T27255 609-614 NN denotes on of
T27254 607-609 IN denotes ti
T27253 598-607 NN denotes MTb induc
T27252 594-597 NN denotes for
T27251 590-593 IN denotes ant
T27250 581-590 JJ denotes is import
T27249 578-580 VB denotes 88
T27248 573-578 NN denotes ) MyD
T27247 572-573 -RRB- denotes B
T27246 571-572 NN denotes (
T27245 569-570 -LRB- denotes .
T27244 568-569 -RRB- denotes )
T27243 564-568 CD denotes 0.01
T27242 563-564 SYM denotes <
T27241 562-563 NN denotes p
T27240 560-561 -COMMA- denotes ,
T27239 558-560 SYM denotes **
T27238 557-558 -LRB- denotes (
T27237 553-556 NN denotes MTb
T27236 548-552 IN denotes with
T27235 539-547 VB denotes infected
T27234 536-538 CC denotes or
T27233 534-535 -RRB- denotes )
T27232 530-534 CD denotes 0.05
T27231 529-530 SYM denotes <
T27230 528-529 NN denotes p
T27229 526-527 -COMMA- denotes ,
T27228 525-526 SYM denotes *
T27227 524-525 -LRB- denotes (
T27226 516-523 NN denotes Pam3Cys
T27225 511-515 IN denotes with
T27224 501-510 VB denotes incubated
T27223 496-500 VB denotes were
T27222 490-495 NN denotes cells
T27221 486-489 DT denotes the
T27220 481-485 WRB denotes when
T27219 471-480 VB denotes increased
T27218 457-470 RB denotes significantly
T27217 453-456 VB denotes was
T27216 442-452 NN denotes expression
R19660 T27153 T27150 arg1Of cascade,The
R19661 T27153 T27151 arg1Of cascade,MyD88-mediated
R19662 T27153 T27152 arg1Of cascade,signaling
R19663 T27153 T27154 arg1Of cascade,is
R19664 T27153 T27155 arg1Of cascade,important
R19665 T27155 T27154 arg2Of important,is
R19666 T27155 T27156 arg1Of important,for
R19667 T27158 T27156 arg2Of induction,for
R19668 T27158 T27157 arg1Of induction,MTb
R19669 T27158 T27159 arg1Of induction,of
R19670 T27158 T27162 arg1Of induction,in
R19671 T27161 T27159 arg2Of expression,of
R19672 T27161 T27160 arg1Of expression,NFAT5
R19673 T27164 T27162 arg2Of monocytes,in
R19674 T27164 T27163 arg1Of monocytes,human
R19675 T27166 T27165 arg2Of A,(
R19676 T27167 T27165 arg3Of ),(
R19677 T27168 T27165 arg1Of Engagement,(
R19678 T27168 T27169 arg1Of Engagement,of
R19679 T27168 T27172 arg1Of Engagement,enhances
R19680 T27170 T27169 arg2Of TLR2,of
R19681 T27172 T27171 arg1Of enhances,significantly
R19682 T27174 T27173 arg1Of mRNA,NFAT5
R19683 T27175 T27172 arg2Of synthesis,enhances
R19684 T27175 T27174 arg1Of synthesis,mRNA
R19685 T27175 T27176 arg1Of synthesis,in
R19686 T27177 T27176 arg2Of monocytes,in
R19687 T27179 T27178 arg1Of cells,THP-1
R19688 T27179 T27180 arg1Of cells,were
R19689 T27179 T27181 arg2Of cells,incubated
R19690 T27181 T27180 arg2Of incubated,were
R19691 T27181 T27182 arg1Of incubated,with
R19692 T27186 T27183 arg1Of Pam3Cys,the
R19693 T27186 T27184 arg1Of Pam3Cys,TLR2-specific
R19694 T27186 T27185 arg1Of Pam3Cys,ligand
R19695 T27186 T27187 arg1Of Pam3Cys,(
R19696 T27186 T27191 arg1Of Pam3Cys,","
R19697 T27186 T27192 arg2Of Pam3Cys,infected
R19698 T27186 T27202 arg1Of Pam3Cys,or
R19699 T27186 T27203 arg2Of Pam3Cys,left
R19700 T27186 T27204 arg1Of Pam3Cys,untreated
R19701 T27189 T27187 arg2Of µg/ml,(
R19702 T27189 T27188 arg1Of µg/ml,5
R19703 T27190 T27187 arg3Of ),(
R19704 T27192 T27193 arg1Of infected,with
R19705 T27196 T27193 arg2Of CDC1551,with
R19706 T27196 T27194 arg1Of CDC1551,MTb
R19707 T27196 T27195 arg1Of CDC1551,strain
R19708 T27196 T27197 arg1Of CDC1551,(
R19709 T27199 T27197 arg2Of cells∶bacilli,(
R19710 T27199 T27198 arg1Of cells∶bacilli,1∶1
R19711 T27200 T27197 arg3Of ),(
R19712 T27202 T27201 arg1Of or,","
R19713 T27204 T27182 arg2Of untreated,with
R19714 T27207 T27205 arg2Of hours,After
R19715 T27207 T27206 arg1Of hours,16
R19716 T27211 T27209 arg1Of levels,NFAT5
R19717 T27211 T27210 arg1Of levels,mRNA
R19718 T27211 T27212 arg1Of levels,were
R19719 T27211 T27213 arg2Of levels,measured
R19720 T27213 T27205 arg1Of measured,After
R19721 T27213 T27208 arg1Of measured,","
R19722 T27213 T27212 arg2Of measured,were
R19723 T27216 T27214 arg1Of expression,NFAT5
R19724 T27216 T27215 arg1Of expression,mRNA
R19725 T27216 T27217 arg1Of expression,was
R19726 T27216 T27219 arg2Of expression,increased
R19727 T27219 T27217 arg2Of increased,was
R19728 T27219 T27218 arg1Of increased,significantly
R19729 T27219 T27220 arg1Of increased,when
R19730 T27222 T27221 arg1Of cells,the
R19731 T27222 T27223 arg1Of cells,were
R19732 T27222 T27224 arg2Of cells,incubated
R19733 T27222 T27235 arg2Of cells,infected
R19734 T27224 T27225 arg1Of incubated,with
R19735 T27224 T27234 arg1Of incubated,or
R19736 T27226 T27225 arg2Of Pam3Cys,with
R19737 T27226 T27227 arg1Of Pam3Cys,(
R19738 T27228 T27229 arg1Of *,","
R19739 T27230 T27229 arg2Of p,","
R19740 T27230 T27231 arg1Of p,<
R19741 T27232 T27227 arg2Of 0.05,(
R19742 T27232 T27228 arg1Of 0.05,*
R19743 T27233 T27227 arg3Of ),(
R19744 T27234 T27220 arg2Of or,when
R19745 T27234 T27223 arg2Of or,were
R19746 T27235 T27234 arg2Of infected,or
R19747 T27235 T27236 arg1Of infected,with
R19748 T27237 T27236 arg2Of MTb,with
R19749 T27237 T27238 arg1Of MTb,(
R19750 T27237 T27245 arg1Of MTb,.
R19751 T27237 T27249 modOf MTb,88
R19752 T27239 T27238 arg2Of **,(
R19753 T27239 T27240 arg1Of **,","
R19754 T27241 T27240 arg2Of p,","
R19755 T27241 T27242 arg1Of p,<
R19756 T27241 T27243 arg1Of p,0.01
R19757 T27244 T27238 arg3Of ),(
R19758 T27246 T27245 arg2Of (,.
R19759 T27247 T27245 arg3Of B,.
R19760 T27248 T27249 arg1Of ) MyD,88
R19761 T27248 T27250 arg1Of ) MyD,is import
R19762 T27250 T27249 arg2Of is import,88
R19763 T27250 T27251 arg1Of is import,ant
R19764 T27253 T27251 arg2Of MTb induc,ant
R19765 T27253 T27252 arg1Of MTb induc,for
R19766 T27253 T27254 arg1Of MTb induc,ti
R19767 T27253 T27258 arg1Of MTb induc,re
R19768 T27257 T27254 arg2Of 5 gene exp,ti
R19769 T27257 T27255 arg1Of 5 gene exp,on of
R19770 T27257 T27256 arg1Of 5 gene exp,NFAT
R19771 T27260 T27258 arg2Of in human ,re
R19772 T27260 T27259 arg1Of in human ,ssion
R19773 T27262 T27261 arg1Of cells,THP-1
R19774 T27262 T27263 arg1Of cells,that
R19775 T27262 T27265 arg1Of cells,express
R19776 T27262 T27275 arg1Of cells,were
R19777 T27262 T27276 arg2Of cells,constructed
R19778 T27265 T27264 arg1Of express,constitutively
R19779 T27267 T27265 arg2Of shRNA,express
R19780 T27267 T27266 arg1Of shRNA,lentivirally-delivered
R19781 T27267 T27268 arg1Of shRNA,targeting
R19782 T27269 T27270 arg1Of MyD88,or
R19783 T27270 T27268 arg2Of or,targeting
R19784 T27270 T27273 arg1Of or,targeting
R19785 T27272 T27270 arg2Of shRNA,or
R19786 T27272 T27271 arg1Of shRNA,control
R19787 T27274 T27273 arg2Of GFP,targeting
R19788 T27276 T27275 arg2Of constructed,were
R19789 T27276 T27277 arg1Of constructed,as
R19790 T27276 T27281 arg1Of constructed,and
R19791 T27278 T27277 arg2Of described,as
R19792 T27278 T27279 arg1Of described,in
R19793 T27280 T27279 arg2Of Materials,in
R19794 T27281 T27303 arg1Of and,and
R19795 T27283 T27282 arg1Of Cells,Methods.
R19796 T27283 T27284 arg1Of Cells,were
R19797 T27283 T27285 arg2Of Cells,infected
R19798 T27283 T27295 arg1Of Cells,left
R19799 T27285 T27284 arg2Of infected,were
R19800 T27285 T27286 arg1Of infected,with
R19801 T27285 T27294 arg1Of infected,or
R19802 T27289 T27286 arg2Of CDC1551,with
R19803 T27289 T27287 arg1Of CDC1551,MTb
R19804 T27289 T27288 arg1Of CDC1551,strain
R19805 T27289 T27290 arg1Of CDC1551,(
R19806 T27292 T27290 arg2Of cells∶bacilli,(
R19807 T27292 T27291 arg1Of cells∶bacilli,1∶1
R19808 T27293 T27290 arg3Of ),(
R19809 T27294 T27281 arg2Of or,and
R19810 T27295 T27294 arg2Of left,or
R19811 T27295 T27297 arg1Of left,for
R19812 T27295 T27300 arg1Of left,at
R19813 T27297 T27296 arg1Of for,uninfected
R19814 T27299 T27297 arg2Of hours,for
R19815 T27299 T27298 arg1Of hours,16
R19816 T27301 T27300 arg2Of 37°C,at
R19817 T27303 T27302 arg1Of and,","
R19818 T27304 T27305 arg1Of RNA,was
R19819 T27304 T27306 arg2Of RNA,analyzed
R19820 T27306 T27303 arg2Of analyzed,and
R19821 T27306 T27305 arg2Of analyzed,was
R19822 T27309 T27307 arg1Of levels,NFAT5
R19823 T27309 T27308 arg1Of levels,mRNA
R19824 T27309 T27310 arg1Of levels,were
R19825 T27309 T27312 arg2Of levels,inhibited
R19826 T27312 T27310 arg2Of inhibited,were
R19827 T27312 T27311 arg1Of inhibited,significantly
R19828 T27312 T27313 arg1Of inhibited,in
R19829 T27312 T27324 arg1Of inhibited,compared
R19830 T27315 T27313 arg2Of cells,in
R19831 T27315 T27314 arg1Of cells,the
R19832 T27315 T27316 arg2Of cells,transduced
R19833 T27316 T27317 arg1Of transduced,with
R19834 T27319 T27317 arg2Of shRNA,with
R19835 T27319 T27318 arg1Of shRNA,MyD88-specific
R19836 T27319 T27320 arg1Of shRNA,(
R19837 T27322 T27320 arg2Of bars,(
R19838 T27322 T27321 arg1Of bars,black
R19839 T27323 T27320 arg3Of ),(
R19840 T27325 T27324 arg2Of with,compared
R19841 T27327 T27325 arg2Of cells,with
R19842 T27327 T27326 arg1Of cells,the
R19843 T27327 T27328 arg2Of cells,transduced
R19844 T27328 T27329 arg1Of transduced,with
R19845 T27331 T27329 arg2Of shRNA,with
R19846 T27331 T27330 arg1Of shRNA,control
R19847 T27331 T27332 arg1Of shRNA,(
R19848 T27331 T27336 arg1Of shRNA,in
R19849 T27334 T27332 arg2Of bars,(
R19850 T27334 T27333 arg1Of bars,open
R19851 T27335 T27332 arg3Of ),(
R19852 T27336 T27337 arg1Of in,both
R19853 T27340 T27341 arg1Of absence,or
R19854 T27341 T27336 arg2Of or,in
R19855 T27341 T27338 arg1Of or,","
R19856 T27341 T27339 arg1Of or,the
R19857 T27341 T27343 arg1Of or,of
R19858 T27342 T27341 arg2Of presence,or
R19859 T27345 T27343 arg2Of infection,of
R19860 T27345 T27344 arg1Of infection,MTb
R19861 T27346 T27347 arg1Of TNF,and
R19862 T27348 T27347 arg2Of CD86,and
R19863 T27349 T27346 arg1Of mRNAs,TNF
R19864 T27349 T27348 arg1Of mRNAs,CD86
R19865 T27349 T27353 arg2Of mRNAs,of
R19866 T27349 T27354 arg1Of mRNAs,which
R19867 T27349 T27378 arg1Of mRNAs,are
R19868 T27349 T27379 arg2Of mRNAs,required
R19869 T27352 T27351 arg1Of expression,the
R19870 T27352 T27353 arg1Of expression,of
R19871 T27352 T27355 arg1Of expression,are
R19872 T27352 T27356 arg1Of expression,MyD88-dependent
R19873 T27352 T27358 arg1Of expression,-independent
R19874 T27352 T27366 arg1Of expression,were
R19875 T27352 T27367 arg2Of expression,measured
R19876 T27355 T27361 arg1Of are,","
R19877 T27356 T27357 arg1Of MyD88-dependent,and
R19878 T27357 T27355 arg2Of and,are
R19879 T27357 T27359 arg1Of and,","
R19880 T27357 T27360 arg1Of and,respectively
R19881 T27358 T27357 arg2Of -independent,and
R19882 T27361 T27350 arg1Of ",",","
R19883 T27364 T27362 arg2Of infection,during
R19884 T27364 T27363 arg1Of infection,MTb
R19885 T27367 T27361 arg2Of measured,","
R19886 T27367 T27362 arg1Of measured,during
R19887 T27367 T27365 arg1Of measured,","
R19888 T27367 T27366 arg2Of measured,were
R19889 T27367 T27368 arg1Of measured,as
R19890 T27369 T27370 arg1Of controls.,(
R19891 T27371 T27370 arg2Of C,(
R19892 T27371 T27372 arg1Of C,","
R19893 T27373 T27372 arg2Of D,","
R19894 T27374 T27370 arg3Of ),(
R19895 T27375 T27376 arg1Of IRAK1,and
R19896 T27376 T27368 arg2Of and,as
R19897 T27376 T27369 arg1Of and,controls.
R19898 T27377 T27376 arg2Of TRAF6,and
R19899 T27379 T27378 arg2Of required,are
R19900 T27379 T27380 arg1Of required,for
R19901 T27382 T27380 arg2Of induction,for
R19902 T27382 T27381 arg1Of induction,MTb
R19903 T27382 T27383 arg1Of induction,of
R19904 T27382 T27387 arg1Of induction,in
R19905 T27386 T27383 arg2Of expression,of
R19906 T27386 T27384 arg1Of expression,NFAT5
R19907 T27386 T27385 arg1Of expression,gene
R19908 T27389 T27387 arg2Of monocytes,in
R19909 T27389 T27388 arg1Of monocytes,human
R19910 T27391 T27390 arg1Of cells,THP-1
R19911 T27391 T27392 arg1Of cells,that
R19912 T27391 T27394 arg1Of cells,express
R19913 T27391 T27400 arg1Of cells,were
R19914 T27391 T27401 arg2Of cells,constructed
R19915 T27394 T27393 arg1Of express,constitutively
R19916 T27396 T27395 arg1Of IRAK1-,lentivirally-delivered
R19917 T27396 T27397 arg1Of IRAK1-,or
R19918 T27397 T27394 arg2Of or,express
R19919 T27399 T27397 arg2Of shRNA,or
R19920 T27399 T27398 arg1Of shRNA,TRAF6-specific
R19921 T27401 T27400 arg2Of constructed,were
R19922 T27401 T27402 arg1Of constructed,as
R19923 T27401 T27406 arg1Of constructed,and
R19924 T27403 T27402 arg2Of described,as
R19925 T27403 T27404 arg1Of described,in
R19926 T27405 T27404 arg2Of Materials,in
R19927 T27409 T27407 arg1Of cells,Methods.
R19928 T27409 T27408 arg1Of cells,THP-1
R19929 T27409 T27410 arg1Of cells,expressing
R19930 T27409 T27413 arg1Of cells,were
R19931 T27409 T27414 arg2Of cells,used
R19932 T27412 T27410 arg2Of shRNA,expressing
R19933 T27412 T27411 arg1Of shRNA,control
R19934 T27414 T27406 arg2Of used,and
R19935 T27414 T27413 arg2Of used,were
R19936 T27414 T27415 arg1Of used,as
R19937 T27416 T27415 arg2Of described,as
R19938 T27416 T27417 arg1Of described,in
R19939 T27418 T27417 arg2Of 7B,in
R19940 T27419 T27420 arg1Of Cells,were
R19941 T27419 T27421 arg2Of Cells,infected
R19942 T27419 T27427 arg1Of Cells,left
R19943 T27421 T27420 arg2Of infected,were
R19944 T27421 T27422 arg1Of infected,with
R19945 T27421 T27426 arg1Of infected,or
R19946 T27425 T27422 arg2Of CDC1551,with
R19947 T27425 T27423 arg1Of CDC1551,MTb
R19948 T27425 T27424 arg1Of CDC1551,strain
R19949 T27426 T27435 arg1Of or,and
R19950 T27427 T27426 arg2Of left,or
R19951 T27427 T27429 arg1Of left,for
R19952 T27427 T27432 arg1Of left,at
R19953 T27429 T27428 arg1Of for,uninfected
R19954 T27431 T27429 arg2Of hours,for
R19955 T27431 T27430 arg1Of hours,16
R19956 T27433 T27432 arg2Of 37°C,at
R19957 T27435 T27434 arg1Of and,","
R19958 T27436 T27437 arg1Of RNA,was
R19959 T27436 T27438 arg2Of RNA,analyzed
R19960 T27438 T27435 arg2Of analyzed,and
R19961 T27438 T27437 arg2Of analyzed,was
R19962 T27440 T27439 arg1Of expression,NFAT5
R19963 T27440 T27441 arg1Of expression,was
R19964 T27440 T27443 arg2Of expression,inhibited
R19965 T27443 T27441 arg2Of inhibited,was
R19966 T27443 T27442 arg1Of inhibited,significantly
R19967 T27443 T27444 arg1Of inhibited,in
R19968 T27447 T27444 arg2Of cells,in
R19969 T27447 T27445 arg1Of cells,the
R19970 T27447 T27446 arg1Of cells,MTb-infected
R19971 T27447 T27448 arg1Of cells,expressing
R19972 T27448 T27464 arg1Of expressing,compared
R19973 T27450 T27449 arg1Of IRAK1,either
R19974 T27450 T27451 arg1Of IRAK1,(
R19975 T27450 T27454 arg1Of IRAK1,or
R19976 T27452 T27451 arg2Of C,(
R19977 T27453 T27451 arg3Of ),(
R19978 T27454 T27448 arg2Of or,expressing
R19979 T27457 T27456 arg2Of D,(
R19980 T27458 T27456 arg3Of ),(
R19981 T27459 T27454 arg2Of shRNA,or
R19982 T27459 T27455 arg1Of shRNA,TRAF6
R19983 T27459 T27456 arg1Of shRNA,(
R19984 T27459 T27460 arg1Of shRNA,(
R19985 T27462 T27460 arg2Of bars,(
R19986 T27462 T27461 arg1Of bars,black
R19987 T27463 T27460 arg3Of ),(
R19988 T27465 T27464 arg2Of to,compared
R19989 T27466 T27465 arg2Of cells,to
R19990 T27466 T27467 arg1Of cells,expressing
R19991 T27469 T27467 arg2Of shRNA,expressing
R19992 T27469 T27468 arg1Of shRNA,control
R19993 T27469 T27470 arg1Of shRNA,(
R19994 T27472 T27470 arg2Of bars,(
R19995 T27472 T27471 arg1Of bars,open
R19996 T27473 T27470 arg3Of ),(
R19997 T27474 T27475 arg1Of TNF,and
R19998 T27476 T27475 arg2Of CD86,and
R19999 T27477 T27474 arg1Of mRNAs,TNF
R20000 T27477 T27476 arg1Of mRNAs,CD86
R20001 T27477 T27478 arg1Of mRNAs,","
R20002 T27477 T27480 arg2Of mRNAs,of
R20003 T27477 T27481 arg1Of mRNAs,which
R20004 T27477 T27493 arg1Of mRNAs,were
R20005 T27477 T27494 arg2Of mRNAs,measured
R20006 T27479 T27480 arg1Of both,of
R20007 T27479 T27482 arg1Of both,require
R20008 T27483 T27484 arg1Of IRAK1,and
R20009 T27484 T27482 arg2Of and,require
R20010 T27484 T27486 modOf and,to
R20011 T27484 T27487 arg1Of and,be
R20012 T27484 T27488 arg2Of and,induced
R20013 T27485 T27484 arg2Of TRAF6,and
R20014 T27488 T27486 arg1Of induced,to
R20015 T27488 T27487 arg2Of induced,be
R20016 T27491 T27488 arg1Of activation,induced
R20017 T27491 T27489 arg2Of activation,by
R20018 T27491 T27490 arg1Of activation,PRR
R20019 T27494 T27492 arg1Of measured,","
R20020 T27494 T27493 arg2Of measured,were
R20021 T27494 T27495 arg1Of measured,as
R20022 T27496 T27495 arg2Of controls.,as
R20023 T27496 T27497 arg1Of controls.,(
R20024 T27498 T27499 arg1Of *,","
R20025 T27500 T27499 arg2Of p,","
R20026 T27502 T27497 arg2Of 0.05,(
R20027 T27502 T27498 arg1Of 0.05,*
R20028 T27502 T27501 arg1Of 0.05,<
R20029 T27502 T27503 arg1Of 0.05,;
R20030 T27504 T27503 arg2Of **,;
R20031 T27504 T27505 arg1Of **,","
R20032 T27506 T27505 arg2Of p,","
R20033 T27506 T27507 arg1Of p,<
R20034 T27506 T27508 arg1Of p,0.01
R20035 T27509 T27497 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T27043 1946-1950 Antecedent denotes CD86
T27042 1938-1941 Antecedent denotes TNF
T27041 1966-1971 Anaphor denotes which
T27040 1191-1195 Antecedent denotes CD86
T27039 1183-1186 Antecedent denotes TNF
T27038 1221-1226 Anaphor denotes which
R19651 T27038 T27039 boundBy which,TNF
R19652 T27038 T27040 boundBy which,CD86
R19653 T27041 T27042 boundBy which,TNF
R19654 T27041 T27043 boundBy which,CD86

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T27046 170-174 Protein denotes TLR2
T27045 115-120 Protein denotes NFAT5
T27044 48-53 Protein denotes MyD88
T27070 1938-1941 Protein denotes TNF
T27069 1919-1924 Protein denotes shRNA
T27068 1853-1858 Protein denotes TRAF6
T27067 1840-1845 Protein denotes IRAK1
T27066 1751-1756 Protein denotes NFAT5
T27065 1608-1613 Protein denotes shRNA
T27064 1500-1505 Protein denotes TRAF6
T27063 1490-1495 Protein denotes IRAK1
T27062 1385-1390 Protein denotes NFAT5
T27061 1345-1350 Protein denotes TRAF6
T27060 1335-1340 Protein denotes IRAK1
T27059 1231-1236 Protein denotes MyD88
T27058 1191-1195 Protein denotes CD86
T27057 1183-1186 Protein denotes TNF
T27056 1032-1037 Protein denotes MyD88
T27055 956-961 Protein denotes NFAT5
T27054 769-772 Protein denotes GFP
T27053 736-741 Protein denotes MyD88
T27052 615-620 Protein denotes NFAT5
T27051 575-580 Protein denotes MyD88
T27050 431-436 Protein denotes NFAT5
T27049 398-403 Protein denotes NFAT5
T27048 269-273 Protein denotes TLR2
T27047 198-203 Protein denotes NFAT5
T27073 1990-1995 Protein denotes TRAF6
T27072 1980-1985 Protein denotes IRAK1
T27071 1946-1950 Protein denotes CD86

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T27529 1946-1950 http://www.uniprot.org/uniprot/P42081 denotes CD86
T27528 1191-1195 http://www.uniprot.org/uniprot/P42081 denotes CD86
T27527 1938-1941 http://www.uniprot.org/uniprot/P01375 denotes TNF
T27526 1183-1186 http://www.uniprot.org/uniprot/P01375 denotes TNF
T27525 769-772 http://www.uniprot.org/uniprot/Q9U6Y4 denotes GFP
T27524 269-273 http://www.uniprot.org/uniprot/O60603 denotes TLR2
T27523 170-174 http://www.uniprot.org/uniprot/O60603 denotes TLR2
T27522 1751-1756 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27521 1385-1390 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27520 956-961 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27519 615-620 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27518 431-436 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27517 398-403 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27516 198-203 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27515 115-120 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27514 1231-1236 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27513 1032-1037 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27512 736-741 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27511 575-580 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27510 48-53 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T27533 1990-1995 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T27532 1853-1858 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T27531 1500-1505 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T27530 1345-1350 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T27079 1391-1406 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T27078 621-636 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T27077 209-218 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T27076 204-218 http://purl.obolibrary.org/obo/GO_0009299 denotes mRNA synthesis
T27075 63-80 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling cascade
T27074 63-72 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T27080 283-289 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand

GO-CC

Id Subject Object Predicate Lexical cue
T27089 1894-1899 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27088 1816-1821 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27087 1583-1588 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27086 1433-1438 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27085 1084-1089 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27084 1010-1015 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27083 663-668 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27082 490-495 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27081 239-244 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T26970 1938-2080 Sentence denotes TNF and CD86 mRNAs, both of which require IRAK1 and TRAF6 to be induced by PRR activation, were measured as controls. (*, p<0.05; **, p<0.01).
T26969 1751-1937 Sentence denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D) shRNA (black bars) compared to cells expressing control shRNA (open bars).
T26968 1644-1750 Sentence denotes Cells were infected with MTb strain CDC1551 or left uninfected for 16 hours at 37°C, and RNA was analyzed.
T26967 1427-1643 Sentence denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA were constructed as described in Materials and Methods. THP-1 cells expressing control shRNA were used as described in 7B.
T26966 1183-1426 Sentence denotes TNF and CD86 mRNAs, the expression of which are MyD88-dependent and -independent, respectively, during MTb infection, were measured as controls. (C, D) IRAK1 and TRAF6 are required for MTb induction of NFAT5 gene expression in human monocytes.
T26965 956-1182 Sentence denotes NFAT5 mRNA levels were significantly inhibited in the cells transduced with MyD88-specific shRNA (black bars) compared with the cells transduced with control shRNA (open bars) in both, the absence or presence of MTb infection.
T26964 657-955 Sentence denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP were constructed as described in Materials and Methods. Cells were infected with MTb strain CDC1551 (1∶1 cells∶bacilli) or left uninfected for 16 hours at 37°C, and RNA was analyzed.
T26963 431-656 Sentence denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys (*, p<0.05) or infected with MTb (**, p<0.01). (B) MyD88 is important for MTb induction of NFAT5 gene expression in human monocytes.
T26962 382-430 Sentence denotes After 16 hours, NFAT5 mRNA levels were measured.
T26961 233-381 Sentence denotes THP-1 cells were incubated with the TLR2-specific ligand Pam3Cys (5 µg/ml), infected with MTb strain CDC1551 (1∶1 cells∶bacilli), or left untreated.
T26960 152-232 Sentence denotes (A) Engagement of TLR2 significantly enhances NFAT5 mRNA synthesis in monocytes.
T26959 44-151 Sentence denotes The MyD88-mediated signaling cascade is important for MTb induction of NFAT5 expression in human monocytes.
T245 0-151 Sentence denotes 10.1371/journal.ppat.1002620.g007 Figure 7 The MyD88-mediated signaling cascade is important for MTb induction of NFAT5 expression in human monocytes.
T246 152-232 Sentence denotes (A) Engagement of TLR2 significantly enhances NFAT5 mRNA synthesis in monocytes.
T247 233-381 Sentence denotes THP-1 cells were incubated with the TLR2-specific ligand Pam3Cys (5 µg/ml), infected with MTb strain CDC1551 (1∶1 cells∶bacilli), or left untreated.
T248 382-430 Sentence denotes After 16 hours, NFAT5 mRNA levels were measured.
T249 431-656 Sentence denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys (*, p<0.05) or infected with MTb (**, p<0.01). (B) MyD88 is important for MTb induction of NFAT5 gene expression in human monocytes.
T250 657-828 Sentence denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP were constructed as described in Materials and Methods.
T251 829-955 Sentence denotes Cells were infected with MTb strain CDC1551 (1∶1 cells∶bacilli) or left uninfected for 16 hours at 37°C, and RNA was analyzed.
T252 956-1182 Sentence denotes NFAT5 mRNA levels were significantly inhibited in the cells transduced with MyD88-specific shRNA (black bars) compared with the cells transduced with control shRNA (open bars) in both, the absence or presence of MTb infection.
T253 1183-1426 Sentence denotes TNF and CD86 mRNAs, the expression of which are MyD88-dependent and -independent, respectively, during MTb infection, were measured as controls. (C, D) IRAK1 and TRAF6 are required for MTb induction of NFAT5 gene expression in human monocytes.
T254 1427-1576 Sentence denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA were constructed as described in Materials and Methods.
T255 1577-1643 Sentence denotes THP-1 cells expressing control shRNA were used as described in 7B.
T256 1644-1750 Sentence denotes Cells were infected with MTb strain CDC1551 or left uninfected for 16 hours at 37°C, and RNA was analyzed.
T257 1751-1937 Sentence denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D) shRNA (black bars) compared to cells expressing control shRNA (open bars).
T258 1938-2080 Sentence denotes TNF and CD86 mRNAs, both of which require IRAK1 and TRAF6 to be induced by PRR activation, were measured as controls. (*, p<0.05; **, p<0.01).

simple1

Id Subject Object Predicate Lexical cue
T27124 1990-1995 Protein denotes TRAF6
T27123 1980-1985 Protein denotes IRAK1
T27122 1946-1950 Protein denotes CD86
T27121 1938-1941 Protein denotes TNF
T27120 1919-1924 Protein denotes shRNA
T27119 1853-1858 Protein denotes TRAF6
T27118 1840-1845 Protein denotes IRAK1
T27117 1751-1756 Protein denotes NFAT5
T27116 1608-1613 Protein denotes shRNA
T27115 1500-1505 Protein denotes TRAF6
T27114 1490-1495 Protein denotes IRAK1
T27113 1385-1390 Protein denotes NFAT5
T27112 1345-1350 Protein denotes TRAF6
T27111 1335-1340 Protein denotes IRAK1
T27110 1231-1236 Protein denotes MyD88
T27109 1191-1195 Protein denotes CD86
T27108 1183-1186 Protein denotes TNF
T27107 1032-1037 Protein denotes MyD88
T27106 956-961 Protein denotes NFAT5
T27105 769-772 Protein denotes GFP
T27104 736-741 Protein denotes MyD88
T27103 615-620 Protein denotes NFAT5
T27102 575-580 Protein denotes MyD88
T27101 431-436 Protein denotes NFAT5
T27100 398-403 Protein denotes NFAT5
T27099 269-273 Protein denotes TLR2
T27098 198-203 Protein denotes NFAT5
T27097 170-174 Protein denotes TLR2
T27096 115-120 Protein denotes NFAT5
T27095 48-53 Protein denotes MyD88

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T28243 1972-1979 Positive_regulation denotes require
T28242 2002-2009 Positive_regulation denotes induced
T28241 1757-1767 Gene_expression denotes expression
T28240 1786-1795 Negative_regulation denotes inhibited
T28239 1900-1910 Gene_expression denotes expressing
T28238 1822-1832 Gene_expression denotes expressing
T28237 1589-1599 Gene_expression denotes expressing
T28236 1459-1466 Gene_expression denotes express
T28235 1355-1363 Positive_regulation denotes required
T28234 1372-1381 Positive_regulation denotes induction
T28233 1396-1406 Gene_expression denotes expression
T28232 1237-1246 Regulation denotes dependent
T28231 1207-1217 Gene_expression denotes expression
T28230 993-1002 Negative_regulation denotes inhibited
T28229 967-973 Transcription denotes levels
T28228 689-696 Gene_expression denotes express
T28227 626-636 Gene_expression denotes expression
T28226 602-611 Positive_regulation denotes induction
T28225 471-480 Positive_regulation denotes increased
T28224 442-452 Transcription denotes expression
T28223 409-415 Transcription denotes levels
T28222 209-218 Transcription denotes synthesis
T28221 189-197 Positive_regulation denotes enhances
T28220 156-166 Binding denotes Engagement
T28219 121-131 Gene_expression denotes expression
T28218 102-111 Positive_regulation denotes induction
T28217 1990-1995 Protein denotes TRAF6
T28216 1980-1985 Protein denotes IRAK1
T28215 1946-1950 Protein denotes CD86
T28214 1938-1941 Protein denotes TNF
T28213 1919-1924 Protein denotes shRNA
T28212 1853-1858 Protein denotes TRAF6
T28211 1840-1845 Protein denotes IRAK1
T28210 1751-1756 Protein denotes NFAT5
T28209 1608-1613 Protein denotes shRNA
T28208 1500-1505 Protein denotes TRAF6
T28207 1490-1495 Protein denotes IRAK1
T28206 1385-1390 Protein denotes NFAT5
T28205 1345-1350 Protein denotes TRAF6
T28204 1335-1340 Protein denotes IRAK1
T28203 1231-1236 Protein denotes MyD88
T28202 1191-1195 Protein denotes CD86
T28201 1183-1186 Protein denotes TNF
T28200 1032-1037 Protein denotes MyD88
T28199 956-961 Protein denotes NFAT5
T28198 769-772 Protein denotes GFP
T28197 736-741 Protein denotes MyD88
T28196 615-620 Protein denotes NFAT5
T28195 575-580 Protein denotes MyD88
T28194 431-436 Protein denotes NFAT5
T28193 398-403 Protein denotes NFAT5
T28192 269-273 Protein denotes TLR2
T28191 198-203 Protein denotes NFAT5
T28190 170-174 Protein denotes TLR2
T28189 115-120 Protein denotes NFAT5
T28188 48-53 Protein denotes MyD88
R20575 T28189 T28219 themeOf NFAT5,expression
R20576 T28190 T28220 themeOf TLR2,Engagement
R20577 T28191 T28222 themeOf NFAT5,synthesis
R20578 T28193 T28223 themeOf NFAT5,levels
R20579 T28194 T28224 themeOf NFAT5,expression
R20580 T28196 T28227 themeOf NFAT5,expression
R20587 T28204 T28235 themeOf IRAK1,required
R20588 T28205 T28235 causeOf TRAF6,required
R20589 T28206 T28233 themeOf NFAT5,expression
R20590 T28207 T28236 themeOf IRAK1,express
R20591 T28209 T28237 themeOf shRNA,expressing
R20592 T28210 T28241 themeOf NFAT5,expression
R20593 T28211 T28238 themeOf IRAK1,expressing
R20594 T28212 T28238 themeOf TRAF6,expressing
R20595 T28213 T28239 themeOf shRNA,expressing
R20596 T28216 T28243 themeOf IRAK1,require
R20597 T28216 T28242 themeOf IRAK1,induced
R20598 T28219 T28218 themeOf expression,induction
R20599 T28222 T28221 themeOf synthesis,enhances
R20600 T28224 T28225 themeOf expression,increased
R20604 T28233 T28234 themeOf expression,induction
R20605 T28241 T28240 themeOf expression,inhibited
R20581 T28197 T28228 themeOf MyD88,express
R20582 T28198 T28228 themeOf GFP,express
R20583 T28199 T28229 themeOf NFAT5,levels
R20584 T28199 T28230 themeOf NFAT5,inhibited
R20585 T28201 T28231 themeOf TNF,expression
R20586 T28202 T28231 themeOf CD86,expression
R20601 T28227 T28226 themeOf expression,induction
R20602 T28231 T28232 themeOf expression,dependent
R20603 T28231 T28232 themeOf expression,dependent

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T27671 689-696 Gene_expression denotes express
T27670 602-611 Positive_regulation denotes induction
T27669 626-636 Gene_expression denotes expression
T27668 442-452 Transcription denotes expression
T27667 471-480 Positive_regulation denotes increased
T27666 189-197 Positive_regulation denotes enhances
T27665 209-218 Transcription denotes synthesis
T27664 156-166 Binding denotes Engagement
T27663 121-131 Gene_expression denotes expression
T27662 102-111 Positive_regulation denotes induction
T27661 1990-1995 Protein denotes TRAF6
T27660 1980-1985 Protein denotes IRAK1
T27659 1946-1950 Protein denotes CD86
T27658 1938-1941 Protein denotes TNF
T27657 1919-1924 Protein denotes shRNA
T27656 1853-1858 Protein denotes TRAF6
T27655 1840-1845 Protein denotes IRAK1
T27654 1751-1756 Protein denotes NFAT5
T27653 1608-1613 Protein denotes shRNA
T27652 1500-1505 Protein denotes TRAF6
T27651 1490-1495 Protein denotes IRAK1
T27650 1385-1390 Protein denotes NFAT5
T27649 1345-1350 Protein denotes TRAF6
T27648 1335-1340 Protein denotes IRAK1
T27647 1231-1236 Protein denotes MyD88
T27646 1191-1195 Protein denotes CD86
T27645 1183-1186 Protein denotes TNF
T27644 1032-1037 Protein denotes MyD88
T27643 956-961 Protein denotes NFAT5
T27642 769-772 Protein denotes GFP
T27641 736-741 Protein denotes MyD88
T27640 615-620 Protein denotes NFAT5
T27639 575-580 Protein denotes MyD88
T27638 431-436 Protein denotes NFAT5
T27637 398-403 Protein denotes NFAT5
T27636 269-273 Protein denotes TLR2
T27635 198-203 Protein denotes NFAT5
T27634 170-174 Protein denotes TLR2
T27633 115-120 Protein denotes NFAT5
T27632 48-53 Protein denotes MyD88
T27684 2002-2009 Positive_regulation denotes induced
T27683 1972-1979 Positive_regulation denotes require
T27682 1822-1832 Gene_expression denotes expressing
T27681 1757-1767 Gene_expression denotes expression
T27680 1900-1910 Gene_expression denotes expressing
T27679 1786-1795 Negative_regulation denotes inhibited
T27678 1589-1599 Gene_expression denotes expressing
T27677 1459-1466 Gene_expression denotes express
T27676 1372-1381 Positive_regulation denotes induction
T27675 1396-1406 Gene_expression denotes expression
T27674 1355-1363 Positive_regulation denotes required
T27673 1207-1217 Gene_expression denotes expression
T27672 993-1002 Negative_regulation denotes inhibited
R20088 T27633 T27663 themeOf NFAT5,expression
R20089 T27634 T27664 themeOf TLR2,Engagement
R20090 T27635 T27665 themeOf NFAT5,synthesis
R20091 T27638 T27668 themeOf NFAT5,expression
R20092 T27640 T27669 themeOf NFAT5,expression
R20093 T27641 T27671 themeOf MyD88,express
R20094 T27642 T27671 themeOf GFP,express
R20095 T27643 T27672 themeOf NFAT5,inhibited
R20096 T27645 T27673 themeOf TNF,expression
R20097 T27646 T27673 themeOf CD86,expression
R20098 T27648 T27674 causeOf IRAK1,required
R20099 T27649 T27674 causeOf TRAF6,required
R20100 T27650 T27675 themeOf NFAT5,expression
R20101 T27651 T27677 themeOf IRAK1,express
R20102 T27653 T27678 themeOf shRNA,expressing
R20103 T27654 T27681 themeOf NFAT5,expression
R20104 T27655 T27682 themeOf IRAK1,expressing
R20105 T27656 T27682 themeOf TRAF6,expressing
R20106 T27657 T27680 themeOf shRNA,expressing
R20107 T27658 T27684 themeOf TNF,induced
R20108 T27660 T27683 themeOf IRAK1,require
R20109 T27660 T27684 themeOf IRAK1,induced
R20110 T27663 T27662 themeOf expression,induction
R20111 T27665 T27666 themeOf synthesis,enhances
R20112 T27668 T27667 themeOf expression,increased
R20113 T27669 T27670 themeOf expression,induction
R20114 T27675 T27676 themeOf expression,induction
R20115 T27676 T27674 themeOf induction,required
R20116 T27676 T27674 themeOf induction,required
R20117 T27681 T27679 themeOf expression,inhibited

DLUT931

Id Subject Object Predicate Lexical cue
T27553 1490-1495 Protein denotes IRAK1
T27552 1385-1390 Protein denotes NFAT5
T27551 1345-1350 Protein denotes TRAF6
T27550 1335-1340 Protein denotes IRAK1
T27549 1231-1236 Protein denotes MyD88
T27548 1191-1195 Protein denotes CD86
T27547 1183-1186 Protein denotes TNF
T27546 1032-1037 Protein denotes MyD88
T27545 956-961 Protein denotes NFAT5
T27544 769-772 Protein denotes GFP
T27543 736-741 Protein denotes MyD88
T27542 615-620 Protein denotes NFAT5
T27541 575-580 Protein denotes MyD88
T27540 431-436 Protein denotes NFAT5
T27539 398-403 Protein denotes NFAT5
T27538 269-273 Protein denotes TLR2
T27537 198-203 Protein denotes NFAT5
T27536 170-174 Protein denotes TLR2
T27535 115-120 Protein denotes NFAT5
T27534 48-53 Protein denotes MyD88
T27566 156-166 Binding denotes Engagement
T27565 102-111 Positive_regulation denotes induction
T27564 121-131 Gene_expression denotes expression
T27563 1990-1995 Protein denotes TRAF6
T27562 1980-1985 Protein denotes IRAK1
T27561 1946-1950 Protein denotes CD86
T27560 1938-1941 Protein denotes TNF
T27559 1919-1924 Protein denotes shRNA
T27558 1853-1858 Protein denotes TRAF6
T27557 1840-1845 Protein denotes IRAK1
T27556 1751-1756 Protein denotes NFAT5
T27555 1608-1613 Protein denotes shRNA
T27554 1500-1505 Protein denotes TRAF6
T27589 1972-1979 Positive_regulation denotes require
T27588 1900-1910 Gene_expression denotes expressing
T27587 1863-1868 Negative_regulation denotes shRNA
T27586 1822-1832 Gene_expression denotes expressing
T27585 1786-1795 Negative_regulation denotes inhibited
T27584 1757-1767 Gene_expression denotes expression
T27583 1589-1599 Gene_expression denotes expressing
T27582 1459-1466 Gene_expression denotes express
T27581 1355-1363 Positive_regulation denotes required
T27580 1372-1381 Positive_regulation denotes induction
T27579 1396-1406 Gene_expression denotes expression
T27578 1237-1246 Regulation denotes dependent
T27577 1207-1217 Gene_expression denotes expression
T27576 993-1002 Negative_regulation denotes inhibited
T27575 967-973 Transcription denotes levels
T27574 689-696 Gene_expression denotes express
T27573 602-611 Positive_regulation denotes induction
T27572 626-636 Gene_expression denotes expression
T27571 471-480 Positive_regulation denotes increased
T27570 442-452 Transcription denotes expression
T27569 409-415 Transcription denotes levels
T27568 189-197 Positive_regulation denotes enhances
T27567 209-218 Transcription denotes synthesis
R20036 T27535 T27564 themeOf NFAT5,expression
R20037 T27536 T27566 themeOf TLR2,Engagement
R20038 T27537 T27567 themeOf NFAT5,synthesis
R20039 T27539 T27569 themeOf NFAT5,levels
R20040 T27540 T27570 themeOf NFAT5,expression
R20041 T27542 T27572 themeOf NFAT5,expression
R20042 T27543 T27574 themeOf MyD88,express
R20043 T27544 T27574 themeOf GFP,express
R20044 T27545 T27575 themeOf NFAT5,levels
R20045 T27547 T27577 themeOf TNF,expression
R20046 T27548 T27577 themeOf CD86,expression
R20047 T27549 T27578 causeOf MyD88,dependent
R20049 T27550 T27581 causeOf IRAK1,required
R20051 T27552 T27579 themeOf NFAT5,expression
R20052 T27553 T27582 themeOf IRAK1,express
R20053 T27555 T27583 themeOf shRNA,expressing
R20054 T27556 T27584 themeOf NFAT5,expression
R20055 T27557 T27586 themeOf IRAK1,expressing
R20056 T27558 T27587 themeOf TRAF6,shRNA
R20058 T27559 T27588 themeOf shRNA,expressing
R20059 T27562 T27589 themeOf IRAK1,require
R20061 T27564 T27565 themeOf expression,induction
R20062 T27566 T27568 causeOf Engagement,enhances
R20063 T27567 T27568 themeOf synthesis,enhances
R20064 T27570 T27571 themeOf expression,increased
R20065 T27572 T27573 themeOf expression,induction
R20066 T27575 T27576 themeOf levels,inhibited
R20067 T27577 T27578 themeOf expression,dependent
R20068 T27577 T27578 themeOf expression,dependent
R20069 T27579 T27580 themeOf expression,induction
R20070 T27580 T27581 themeOf induction,required
R20072 T27584 T27585 themeOf expression,inhibited
R20048 T27549 T27578 causeOf MyD88,dependent
R20050 T27551 T27581 causeOf TRAF6,required
R20057 T27558 T27586 themeOf TRAF6,expressing
R20060 T27563 T27589 themeOf TRAF6,require
R20071 T27580 T27581 themeOf induction,required

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T28331 1165-1181 Regulation denotes of MTb infection
T28330 612-636 Gene_expression denotes of NFAT5 gene expression
T28329 112-131 Gene_expression denotes of NFAT5 expression
T28328 1577-1613 Transcription denotes THP-1 cells expressing control shRNA
T28327 1577-1613 Gene_expression denotes THP-1 cells expressing control shRNA
T28326 657-772 Gene_expression denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
T28325 657-772 Transcription denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
T28324 431-452 Gene_expression denotes NFAT5 mRNA expression
T28323 1382-1406 Gene_expression denotes of NFAT5 gene expression
T28322 431-523 Positive_regulation denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys
T28321 2010-2027 Positive_regulation denotes by PRR activation
T28320 1427-1520 Gene_expression denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
T28319 1427-1520 Gene_expression denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
T28318 1427-1520 Transcription denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
T28317 1751-1862 Negative_regulation denotes NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)
T28316 1286-1300 Regulation denotes MTb infection,
T28315 1751-1767 Gene_expression denotes NFAT5 expression
T28314 1286-1289 Protein denotes MTb
T28313 1345-1350 Protein denotes TRAF6
T28312 956-973 Protein denotes NFAT5 mRNA levels
T28311 528-529 Entity denotes p
T28310 48-62 Protein denotes MyD88-mediated
T28309 141-150 Entity denotes monocytes
T28308 1032-1065 Protein denotes MyD88-specific shRNA (black bars)
T28307 640-655 Entity denotes human monocytes
T28306 1467-1496 Protein denotes lentivirally-delivered IRAK1-
T28305 1500-1514 Protein denotes TRAF6-specific
T28304 1853-1858 Protein denotes TRAF6
T28303 1669-1672 Protein denotes MTb
T28302 874-891 Entity denotes 1∶1 cells∶bacilli
T28301 1644-1649 Entity denotes Cells
T28300 170-174 Protein denotes TLR2
T28299 1938-1941 Protein denotes TNF
T28298 1114-1131 Protein denotes shRNA (open bars)
T28297 938-941 Protein denotes RNA
T28296 398-403 Protein denotes NFAT5
T28295 697-772 Protein denotes lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
T28294 283-289 Entity denotes ligand
T28293 98-101 Protein denotes MTb
T28292 854-857 Protein denotes MTb
T28291 431-436 Protein denotes NFAT5
T28290 1733-1736 Protein denotes RNA
T28289 736-772 Protein denotes MyD88 or control shRNA targeting GFP
T28288 1183-1202 Protein denotes TNF and CD86 mRNAs,
T28287 1990-1995 Protein denotes TRAF6
T28286 115-120 Protein denotes NFAT5
T28285 657-772 Entity denotes THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
T28284 562-563 Entity denotes p
T28283 1938-1956 Protein denotes TNF and CD86 mRNAs
T28282 1891-1899 Entity denotes to cells
T28281 1577-1613 Entity denotes THP-1 cells expressing control shRNA
T28280 1032-1046 Protein denotes MyD88-specific
T28279 1410-1425 Entity denotes human monocytes
T28278 1385-1390 Protein denotes NFAT5
T28277 486-495 Entity denotes the cells
T28276 269-282 Protein denotes TLR2-specific
T28275 1427-1520 Entity denotes THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
T28274 1946-1950 Protein denotes CD86
T28273 1751-1756 Protein denotes NFAT5
T28272 829-834 Entity denotes Cells
T28271 553-556 Protein denotes MTb
T28270 1919-1924 Protein denotes shRNA
T28269 769-772 Protein denotes GFP
T28268 1075-1113 Entity denotes with the cells transduced with control
T28267 1183-1186 Protein denotes TNF
T28266 2013-2016 Protein denotes PRR
T28265 1006-1113 Entity denotes the cells transduced with MyD88-specific shRNA (black bars) compared with the cells transduced with control
T28264 1191-1195 Protein denotes CD86
T28263 1840-1849 Protein denotes IRAK1 (C)
T28262 1799-1862 Protein denotes the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)
T28261 598-601 Protein denotes MTb
T28260 431-441 Protein denotes NFAT5 mRNA
T28259 1863-1868 Protein denotes shRNA
T28258 736-741 Protein denotes MyD88
T28257 323-326 Protein denotes MTb
T28256 962-966 Protein denotes mRNA
T28255 1168-1171 Protein denotes MTb
T28254 615-620 Protein denotes NFAT5
T28253 1980-1985 Protein denotes IRAK1
T28252 1368-1371 Protein denotes MTb
T28251 1335-1340 Protein denotes IRAK1
T28250 198-203 Protein denotes NFAT5
T28249 1231-1246 Protein denotes MyD88-dependent
T28248 1600-1613 Protein denotes control shRNA
T28247 222-231 Entity denotes monocytes
T28246 1500-1520 Protein denotes TRAF6-specific shRNA
T28245 575-580 Protein denotes MyD88
T28244 198-218 Protein denotes NFAT5 mRNA synthesis
R20606 T28246 T28318 themeOf TRAF6-specific shRNA,THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
R20607 T28246 T28319 themeOf TRAF6-specific shRNA,THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
R20608 T28248 T28327 themeOf control shRNA,THP-1 cells expressing control shRNA
R20609 T28248 T28328 themeOf control shRNA,THP-1 cells expressing control shRNA
R20610 T28254 T28330 themeOf NFAT5,of NFAT5 gene expression
R20611 T28255 T28331 themeOf MTb,of MTb infection
R20612 T28260 T28324 themeOf NFAT5 mRNA,NFAT5 mRNA expression
R20613 T28266 T28321 themeOf PRR,by PRR activation
R20614 T28273 T28315 themeOf NFAT5,NFAT5 expression
R20615 T28278 T28323 themeOf NFAT5,of NFAT5 gene expression
R20616 T28286 T28329 themeOf NFAT5,of NFAT5 expression
R20617 T28295 T28325 themeOf lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP,THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
R20618 T28295 T28326 themeOf lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP,THP-1 cells that constitutively express lentivirally-delivered shRNA targeting MyD88 or control shRNA targeting GFP
R20619 T28306 T28320 themeOf lentivirally-delivered IRAK1-,THP-1 cells that constitutively express lentivirally-delivered IRAK1- or TRAF6-specific shRNA
R20620 T28314 T28316 themeOf MTb,"MTb infection,"
R20621 T28315 T28317 themeOf NFAT5 expression,NFAT5 expression was significantly inhibited in the MTb-infected cells expressing either IRAK1 (C) or TRAF6 (D)
R20622 T28324 T28322 themeOf NFAT5 mRNA expression,NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T28187 2079-2080 . denotes .
T28089 1640-1642 NN denotes 7B
T28088 1637-1639 IN denotes in
T28087 1627-1636 VBN denotes described
T28086 1624-1626 IN denotes as
T28085 1619-1623 VBN denotes used
T28084 1614-1618 VBD denotes were
T28083 1608-1613 NNP denotes shRNA
T28082 1600-1607 NN denotes control
T28081 1589-1599 VBG denotes expressing
T28080 1583-1588 NNS denotes cells
T28079 1577-1582 CD denotes THP-1
T28078 1575-1576 . denotes .
T28077 1568-1575 NNPS denotes Methods
T28076 1564-1567 CC denotes and
T28075 1554-1563 NNPS denotes Materials
T28074 1551-1553 IN denotes in
T28073 1541-1550 VBN denotes described
T28072 1538-1540 IN denotes as
T28071 1526-1537 VBN denotes constructed
T28070 1521-1525 VBD denotes were
T28069 1515-1520 NN denotes shRNA
T28068 1500-1514 JJ denotes TRAF6-specific
T28067 1497-1499 CC denotes or
T28066 1495-1496 : denotes -
T28065 1490-1495 NNP denotes IRAK1
T28064 1467-1489 JJ denotes lentivirally-delivered
T28063 1459-1466 VBP denotes express
T28062 1444-1458 RB denotes constitutively
T28061 1439-1443 WDT denotes that
T28060 1433-1438 NNS denotes cells
T28059 1427-1432 CD denotes THP-1
T28058 1425-1426 . denotes .
T28057 1416-1425 NNS denotes monocytes
T28056 1410-1415 JJ denotes human
T28055 1407-1409 IN denotes in
T28054 1396-1406 NN denotes expression
T28053 1391-1395 NN denotes gene
T28052 1385-1390 CD denotes NFAT5
T28051 1382-1384 IN denotes of
T28050 1372-1381 NN denotes induction
T28049 1368-1371 NNP denotes MTb
T28048 1364-1367 IN denotes for
T28047 1355-1363 VBN denotes required
T28046 1351-1354 VBP denotes are
T28045 1345-1350 NNP denotes TRAF6
T28044 1341-1344 CC denotes and
T28043 1335-1340 NNP denotes IRAK1
T28042 1333-1334 -RRB- denotes )
T28041 1332-1333 NNP denotes D
T28040 1330-1331 , denotes ,
T28039 1329-1330 NNP denotes C
T28038 1328-1329 -LRB- denotes (
T28037 1326-1327 . denotes .
T28036 1318-1326 NNS denotes controls
T28035 1315-1317 IN denotes as
T28034 1306-1314 VBN denotes measured
T28033 1301-1305 VBD denotes were
T28032 1299-1300 , denotes ,
T28031 1290-1299 NN denotes infection
T28030 1286-1289 NNP denotes MTb
T28029 1279-1285 IN denotes during
T28028 1277-1278 , denotes ,
T28027 1265-1277 RB denotes respectively
T28026 1263-1264 , denotes ,
T28025 1252-1263 JJ denotes independent
T28024 1251-1252 : denotes -
T28023 1247-1250 CC denotes and
T28022 1231-1246 JJ denotes MyD88-dependent
T28021 1227-1230 VBP denotes are
T28020 1221-1226 WDT denotes which
T28019 1218-1220 IN denotes of
T28018 1207-1217 NN denotes expression
T28017 1203-1206 DT denotes the
T28016 1201-1202 , denotes ,
T28015 1196-1201 NNP denotes mRNAs
T28014 1191-1195 NNP denotes CD86
T28013 1187-1190 CC denotes and
T28012 1183-1186 NNP denotes TNF
T28011 1181-1182 . denotes .
T28010 1172-1181 NN denotes infection
T28009 1168-1171 NNP denotes MTb
T28008 1165-1167 IN denotes of
T28007 1156-1164 NN denotes presence
T28006 1153-1155 CC denotes or
T28005 1145-1152 NN denotes absence
T28004 1141-1144 DT denotes the
T28003 1139-1140 , denotes ,
T28002 1135-1139 DT denotes both
T28001 1132-1134 IN denotes in
T28000 1130-1131 -RRB- denotes )
T27999 1126-1130 NNS denotes bars
T27998 1121-1125 JJ denotes open
T27997 1120-1121 -LRB- denotes (
T27996 1114-1119 NNP denotes shRNA
T27995 1106-1113 NN denotes control
T27994 1101-1105 IN denotes with
T27993 1090-1100 VBN denotes transduced
T27992 1084-1089 NNS denotes cells
T27991 1080-1083 DT denotes the
T27990 1075-1079 IN denotes with
T27989 1066-1074 VBN denotes compared
T27988 1064-1065 -RRB- denotes )
T27987 1060-1064 NNS denotes bars
T27986 1054-1059 JJ denotes black
T27985 1053-1054 -LRB- denotes (
T27984 1047-1052 NNP denotes shRNA
T27983 1032-1046 JJ denotes MyD88-specific
T27982 1027-1031 IN denotes with
T27981 1016-1026 VBN denotes transduced
T27980 1010-1015 NNS denotes cells
T27979 1006-1009 DT denotes the
T27978 1003-1005 IN denotes in
T27977 993-1002 VBN denotes inhibited
T27976 979-992 RB denotes significantly
T27975 974-978 VBD denotes were
T27974 967-973 NNS denotes levels
T27973 962-966 NNP denotes mRNA
T27972 956-961 CD denotes NFAT5
T27971 954-955 . denotes .
T27970 946-954 VBN denotes analyzed
T27969 942-945 VBD denotes was
T27968 938-941 NNP denotes RNA
T27967 934-937 CC denotes and
T27966 932-933 , denotes ,
T27965 931-932 NNP denotes C
T27964 930-931 CD denotes °
T27963 928-930 CD denotes 37
T27962 925-927 IN denotes at
T27961 919-924 NNS denotes hours
T27960 916-918 CD denotes 16
T27959 912-915 IN denotes for
T27958 901-911 JJ denotes uninfected
T27957 896-900 VBN denotes left
T27956 893-895 CC denotes or
T27955 891-892 -RRB- denotes )
T27954 884-891 NNS denotes bacilli
T27953 883-884 VBP denotes ∶
T27952 878-883 NNS denotes cells
T27951 876-877 CD denotes 1
T27950 875-876 CD denotes ∶
T27949 874-875 CD denotes 1
T27948 873-874 -LRB- denotes (
T27947 865-872 NNP denotes CDC1551
T27946 858-864 NN denotes strain
T27945 854-857 NNP denotes MTb
T27944 849-853 IN denotes with
T27943 840-848 VBN denotes infected
T27942 835-839 VBD denotes were
T27941 829-834 NNS denotes Cells
T27940 827-828 . denotes .
T27939 820-827 NNPS denotes Methods
T27938 816-819 CC denotes and
T27937 806-815 NNPS denotes Materials
T27936 803-805 IN denotes in
T27935 793-802 VBN denotes described
T27934 790-792 IN denotes as
T27933 778-789 VBN denotes constructed
T27932 773-777 VBD denotes were
T27931 769-772 NNP denotes GFP
T27930 759-768 VBG denotes targeting
T27929 753-758 NNP denotes shRNA
T27928 745-752 VB denotes control
T27927 742-744 CC denotes or
T27926 736-741 NNP denotes MyD88
T27925 726-735 VBG denotes targeting
T27924 720-725 NNP denotes shRNA
T27923 697-719 JJ denotes lentivirally-delivered
T27922 689-696 VBP denotes express
T27921 674-688 RB denotes constitutively
T27920 669-673 WDT denotes that
T27919 663-668 NNS denotes cells
T27918 657-662 CD denotes THP-1
T27917 655-656 . denotes .
T27916 646-655 NNS denotes monocytes
T27915 640-645 JJ denotes human
T27914 637-639 IN denotes in
T27913 626-636 NN denotes expression
T27912 621-625 NN denotes gene
T27911 615-620 CD denotes NFAT5
T27910 612-614 IN denotes of
T27909 602-611 NN denotes induction
T27908 598-601 NNP denotes MTb
T27907 594-597 IN denotes for
T27906 584-593 JJ denotes important
T27905 581-583 VBZ denotes is
T27904 575-580 NNP denotes MyD88
T27903 573-574 -RRB- denotes )
T27902 572-573 NNP denotes B
T27901 571-572 -LRB- denotes (
T27900 569-570 . denotes .
T27899 568-569 -RRB- denotes )
T27898 564-568 CD denotes 0.01
T27897 563-564 NN denotes <
T27896 562-563 JJ denotes p
T27895 560-561 , denotes ,
T27894 558-560 SYM denotes **
T27893 557-558 -LRB- denotes (
T27892 553-556 NNP denotes MTb
T27891 548-552 IN denotes with
T27890 539-547 VBN denotes infected
T27889 536-538 CC denotes or
T27888 534-535 -RRB- denotes )
T27887 530-534 CD denotes 0.05
T27886 529-530 RB denotes <
T27885 528-529 VB denotes p
T27884 526-527 , denotes ,
T27883 525-526 SYM denotes *
T27882 524-525 -LRB- denotes (
T27881 516-523 NNS denotes Pam3Cys
T27880 511-515 IN denotes with
T27879 501-510 VBN denotes incubated
T27878 496-500 VBD denotes were
T27877 490-495 NNS denotes cells
T27876 486-489 DT denotes the
T27875 481-485 WRB denotes when
T27874 471-480 VBN denotes increased
T28186 2078-2079 -RRB- denotes )
T28185 2074-2078 CD denotes 0.01
T28184 2073-2074 NN denotes <
T28183 2072-2073 JJ denotes p
T28182 2070-2071 , denotes ,
T28181 2068-2070 SYM denotes **
T28180 2066-2067 : denotes ;
T28179 2062-2066 CD denotes 0.05
T28178 2061-2062 RB denotes <
T28177 2060-2061 VB denotes p
T28176 2058-2059 , denotes ,
T28175 2057-2058 SYM denotes *
T28174 2056-2057 -LRB- denotes (
T28173 2054-2055 . denotes .
T28172 2046-2054 NNS denotes controls
T28171 2043-2045 IN denotes as
T28170 2034-2042 VBN denotes measured
T28169 2029-2033 VBD denotes were
T28168 2027-2028 , denotes ,
T28167 2017-2027 NN denotes activation
T28166 2013-2016 NNP denotes PRR
T28165 2010-2012 IN denotes by
T28164 2002-2009 VBN denotes induced
T28163 1999-2001 VB denotes be
T28162 1996-1998 TO denotes to
T28161 1990-1995 CD denotes TRAF6
T28160 1986-1989 CC denotes and
T28159 1980-1985 CD denotes IRAK1
T28158 1972-1979 VBP denotes require
T28157 1966-1971 WDT denotes which
T28156 1963-1965 IN denotes of
T28155 1958-1962 DT denotes both
T28154 1956-1957 , denotes ,
T28153 1951-1956 NNP denotes mRNAs
T28152 1946-1950 NNP denotes CD86
T28151 1942-1945 CC denotes and
T28150 1938-1941 NNP denotes TNF
T28149 1936-1937 . denotes .
T28148 1935-1936 -RRB- denotes )
T28147 1931-1935 NNS denotes bars
T28146 1926-1930 JJ denotes open
T28145 1925-1926 -LRB- denotes (
T28144 1919-1924 NNP denotes shRNA
T28143 1911-1918 NN denotes control
T28142 1900-1910 VBG denotes expressing
T28141 1894-1899 NNS denotes cells
T28140 1891-1893 TO denotes to
T28139 1882-1890 VBN denotes compared
T28138 1880-1881 -RRB- denotes )
T28137 1876-1880 NNS denotes bars
T28136 1870-1875 JJ denotes black
T28135 1869-1870 -LRB- denotes (
T28134 1863-1868 NNP denotes shRNA
T28133 1861-1862 -RRB- denotes )
T28132 1860-1861 NNP denotes D
T28131 1859-1860 -LRB- denotes (
T28130 1853-1858 CD denotes TRAF6
T28129 1850-1852 CC denotes or
T28128 1848-1849 -RRB- denotes )
T28127 1847-1848 NNP denotes C
T28126 1846-1847 -LRB- denotes (
T28125 1840-1845 NNP denotes IRAK1
T28124 1833-1839 CC denotes either
T28123 1822-1832 VBG denotes expressing
T28122 1816-1821 NNS denotes cells
T28121 1803-1815 JJ denotes MTb-infected
T28120 1799-1802 DT denotes the
T28119 1796-1798 IN denotes in
T28118 1786-1795 VBN denotes inhibited
T28117 1772-1785 RB denotes significantly
T28116 1768-1771 VBD denotes was
T28115 1757-1767 NN denotes expression
T28114 1751-1756 CD denotes NFAT5
T28113 1749-1750 . denotes .
T28112 1741-1749 VBN denotes analyzed
T28111 1737-1740 VBD denotes was
T28110 1733-1736 NNP denotes RNA
T28109 1729-1732 CC denotes and
T28108 1727-1728 , denotes ,
T28107 1726-1727 NNP denotes C
T28106 1725-1726 CD denotes °
T28105 1723-1725 CD denotes 37
T28104 1720-1722 IN denotes at
T28103 1714-1719 NNS denotes hours
T28102 1711-1713 CD denotes 16
T28101 1707-1710 IN denotes for
T28100 1696-1706 JJ denotes uninfected
T28099 1691-1695 VBD denotes left
T28098 1688-1690 CC denotes or
T28097 1680-1687 CD denotes CDC1551
T28096 1673-1679 NN denotes strain
T28095 1669-1672 NNP denotes MTb
T28094 1664-1668 IN denotes with
T28093 1655-1663 VBN denotes infected
T28092 1650-1654 VBD denotes were
T28091 1644-1649 NNS denotes Cells
T28090 1642-1643 . denotes .
T27873 457-470 RB denotes significantly
T27872 453-456 VBD denotes was
T27871 442-452 NN denotes expression
T27870 437-441 NNP denotes mRNA
T27869 431-436 CD denotes NFAT5
T27868 429-430 . denotes .
T27867 421-429 VBN denotes measured
T27866 416-420 VBD denotes were
T27865 409-415 NNS denotes levels
T27864 404-408 NNP denotes mRNA
T27863 398-403 NNP denotes NFAT5
T27848 344-345 CD denotes ∶
T27847 343-344 CD denotes 1
T27846 342-343 -LRB- denotes (
T27845 334-341 NNP denotes CDC1551
T27844 327-333 NN denotes strain
T27843 323-326 NNP denotes MTb
T27842 318-322 IN denotes with
T27841 309-317 VBN denotes infected
T27840 307-308 , denotes ,
T27839 306-307 -RRB- denotes )
T27838 304-306 NN denotes ml
T27837 303-304 NN denotes /
T27836 301-303 NN denotes µg
T27835 299-300 CD denotes 5
T27834 298-299 -LRB- denotes (
T27833 290-297 NNS denotes Pam3Cys
T27832 283-289 NN denotes ligand
T27831 269-282 JJ denotes TLR2-specific
T27830 265-268 DT denotes the
T27829 260-264 IN denotes with
T27828 250-259 VBN denotes incubated
T27827 245-249 VBD denotes were
T27826 239-244 NNS denotes cells
T27825 233-238 CD denotes THP-1
T27824 231-232 . denotes .
T27823 222-231 NNS denotes monocytes
T27822 219-221 IN denotes in
T27821 209-218 NN denotes synthesis
T27820 204-208 NNP denotes mRNA
T27819 198-203 CD denotes NFAT5
T27818 189-197 VBZ denotes enhances
T27817 175-188 RB denotes significantly
T27816 170-174 CD denotes TLR2
T27815 167-169 IN denotes of
T27814 156-166 NNP denotes Engagement
T27813 154-155 -RRB- denotes )
T27812 153-154 NNP denotes A
T27811 152-153 -LRB- denotes (
T27810 150-151 . denotes .
T27809 141-150 NNS denotes monocytes
T27808 135-140 JJ denotes human
T27807 132-134 IN denotes in
T27806 121-131 NN denotes expression
T27805 115-120 CD denotes NFAT5
T27804 112-114 IN denotes of
T27803 102-111 NN denotes induction
T27802 98-101 NNP denotes MTb
T27801 94-97 IN denotes for
T27800 84-93 JJ denotes important
T27799 81-83 VBZ denotes is
T27798 73-80 NN denotes cascade
T27797 63-72 VBG denotes signaling
T27796 48-62 JJ denotes MyD88-mediated
T27795 44-47 DT denotes The
T27858 380-381 . denotes .
T27857 371-380 JJ denotes untreated
T27856 366-370 VBD denotes left
T27855 363-365 CC denotes or
T27854 361-362 , denotes ,
T27853 360-361 -RRB- denotes )
T27852 353-360 NNS denotes bacilli
T27851 352-353 VBP denotes ∶
T27850 347-352 NNS denotes cells
T27849 345-346 CD denotes 1
T27862 396-397 , denotes ,
T27861 391-396 NNS denotes hours
T27860 388-390 CD denotes 16
T27859 382-387 IN denotes After
R20182 T27795 T27798 det The,cascade
R20183 T27796 T27798 amod MyD88-mediated,cascade
R20184 T27797 T27798 amod signaling,cascade
R20185 T27798 T27799 nsubj cascade,is
R20186 T27799 T27799 ROOT is,is
R20187 T27800 T27799 acomp important,is
R20188 T27801 T27800 prep for,important
R20189 T27802 T27803 compound MTb,induction
R20190 T27803 T27801 pobj induction,for
R20191 T27804 T27803 prep of,induction
R20192 T27805 T27806 nummod NFAT5,expression
R20193 T27806 T27804 pobj expression,of
R20194 T27807 T27803 prep in,induction
R20195 T27808 T27809 amod human,monocytes
R20196 T27809 T27807 pobj monocytes,in
R20197 T27810 T27799 punct .,is
R20198 T27811 T27814 punct (,Engagement
R20199 T27812 T27814 nmod A,Engagement
R20200 T27813 T27814 punct ),Engagement
R20201 T27814 T27818 nsubj Engagement,enhances
R20202 T27815 T27814 prep of,Engagement
R20203 T27816 T27815 pobj TLR2,of
R20204 T27817 T27818 advmod significantly,enhances
R20205 T27818 T27818 ROOT enhances,enhances
R20206 T27819 T27821 nummod NFAT5,synthesis
R20207 T27820 T27821 compound mRNA,synthesis
R20208 T27821 T27818 dobj synthesis,enhances
R20209 T27822 T27821 prep in,synthesis
R20210 T27823 T27822 pobj monocytes,in
R20211 T27824 T27818 punct .,enhances
R20212 T27825 T27826 nummod THP-1,cells
R20213 T27826 T27828 nsubjpass cells,incubated
R20214 T27827 T27828 auxpass were,incubated
R20215 T27828 T27828 ROOT incubated,incubated
R20216 T27829 T27828 prep with,incubated
R20217 T27830 T27833 det the,Pam3Cys
R20218 T27831 T27833 amod TLR2-specific,Pam3Cys
R20219 T27832 T27833 compound ligand,Pam3Cys
R20220 T27833 T27829 pobj Pam3Cys,with
R20221 T27834 T27833 punct (,Pam3Cys
R20222 T27835 T27836 nummod 5,µg
R20223 T27836 T27838 nmod µg,ml
R20224 T27837 T27838 compound /,ml
R20225 T27838 T27833 appos ml,Pam3Cys
R20226 T27839 T27833 punct ),Pam3Cys
R20227 T27840 T27828 punct ",",incubated
R20228 T27841 T27828 conj infected,incubated
R20229 T27842 T27841 prep with,infected
R20230 T27843 T27844 compound MTb,strain
R20231 T27844 T27845 compound strain,CDC1551
R20262 T27875 T27879 advmod when,incubated
R20263 T27876 T27877 det the,cells
R20264 T27877 T27879 nsubjpass cells,incubated
R20265 T27878 T27879 auxpass were,incubated
R20266 T27879 T27874 advcl incubated,increased
R20267 T27880 T27879 prep with,incubated
R20268 T27881 T27880 pobj Pam3Cys,with
R20269 T27882 T27881 punct (,Pam3Cys
R20270 T27883 T27881 appos *,Pam3Cys
R20271 T27884 T27885 punct ",",p
R20272 T27885 T27881 appos p,Pam3Cys
R20273 T27886 T27887 compound <,0.05
R20274 T27887 T27885 dobj 0.05,p
R20275 T27888 T27885 punct ),p
R20276 T27889 T27885 cc or,p
R20277 T27890 T27885 conj infected,p
R20278 T27891 T27890 prep with,infected
R20279 T27892 T27891 pobj MTb,with
R20280 T27893 T27892 punct (,MTb
R20281 T27894 T27890 punct **,infected
R20282 T27895 T27898 punct ",",0.01
R20283 T27896 T27898 compound p,0.01
R20284 T27897 T27898 compound <,0.01
R20285 T27898 T27890 npadvmod 0.01,infected
R20286 T27899 T27890 punct ),infected
R20287 T27900 T27885 punct .,p
R20288 T27901 T27904 punct (,MyD88
R20289 T27902 T27904 nmod B,MyD88
R20290 T27903 T27904 punct ),MyD88
R20291 T27904 T27905 nsubj MyD88,is
R20292 T27905 T27905 ROOT is,is
R20293 T27906 T27905 acomp important,is
R20294 T27907 T27905 prep for,is
R20295 T27908 T27909 compound MTb,induction
R20296 T27909 T27907 pobj induction,for
R20297 T27910 T27909 prep of,induction
R20298 T27911 T27913 nummod NFAT5,expression
R20299 T27912 T27913 compound gene,expression
R20300 T27913 T27910 pobj expression,of
R20301 T27914 T27913 prep in,expression
R20302 T27915 T27916 amod human,monocytes
R20303 T27916 T27914 pobj monocytes,in
R20304 T27917 T27905 punct .,is
R20305 T27918 T27919 nummod THP-1,cells
R20306 T27919 T27933 nsubjpass cells,constructed
R20307 T27920 T27922 nsubj that,express
R20308 T27921 T27922 advmod constitutively,express
R20309 T27922 T27919 relcl express,cells
R20310 T27923 T27924 compound lentivirally-delivered,shRNA
R20311 T27924 T27933 nsubjpass shRNA,constructed
R20312 T27925 T27924 acl targeting,shRNA
R20313 T27926 T27925 dobj MyD88,targeting
R20314 T27927 T27925 cc or,targeting
R20315 T27928 T27931 compound control,GFP
R20316 T27929 T27931 compound shRNA,GFP
R20317 T27930 T27931 compound targeting,GFP
R20318 T27931 T27924 conj GFP,shRNA
R20319 T27932 T27933 auxpass were,constructed
R20320 T27933 T27933 ROOT constructed,constructed
R20321 T27934 T27935 mark as,described
R20322 T27935 T27933 advcl described,constructed
R20323 T27936 T27935 prep in,described
R20324 T27937 T27936 pobj Materials,in
R20325 T27938 T27937 cc and,Materials
R20326 T27939 T27937 conj Methods,Materials
R20327 T27940 T27933 punct .,constructed
R20328 T27941 T27943 nsubjpass Cells,infected
R20329 T27942 T27943 auxpass were,infected
R20330 T27943 T27943 ROOT infected,infected
R20331 T27944 T27943 prep with,infected
R20332 T27945 T27946 compound MTb,strain
R20333 T27946 T27947 compound strain,CDC1551
R20334 T27947 T27944 pobj CDC1551,with
R20335 T27948 T27949 punct (,1
R20336 T27949 T27952 nummod 1,cells
R20337 T27950 T27952 nummod ∶,cells
R20338 T27951 T27952 nummod 1,cells
R20339 T27952 T27957 nsubj cells,left
R20340 T27953 T27954 compound ∶,bacilli
R20341 T27954 T27952 appos bacilli,cells
R20342 T27955 T27952 punct ),cells
R20343 T27956 T27952 cc or,cells
R20344 T27957 T27943 advcl left,infected
R20345 T27958 T27957 oprd uninfected,left
R20346 T27959 T27957 prep for,left
R20347 T27960 T27961 nummod 16,hours
R20348 T27961 T27959 pobj hours,for
R20349 T27962 T27957 prep at,left
R20350 T27963 T27964 nummod 37,°
R20351 T27964 T27965 nummod °,C
R20352 T27965 T27962 pobj C,at
R20353 T27966 T27957 punct ",",left
R20354 T27967 T27957 cc and,left
R20355 T27968 T27970 nsubjpass RNA,analyzed
R20356 T27969 T27970 auxpass was,analyzed
R20357 T27970 T27957 conj analyzed,left
R20358 T27971 T27970 punct .,analyzed
R20359 T27972 T27974 nummod NFAT5,levels
R20360 T27973 T27974 compound mRNA,levels
R20361 T27974 T27977 nsubjpass levels,inhibited
R20362 T27975 T27977 auxpass were,inhibited
R20363 T27976 T27977 advmod significantly,inhibited
R20364 T27977 T27977 ROOT inhibited,inhibited
R20365 T27978 T27977 prep in,inhibited
R20366 T27979 T27980 det the,cells
R20367 T27980 T27978 pobj cells,in
R20368 T27981 T27977 conj transduced,inhibited
R20369 T27982 T27981 prep with,transduced
R20370 T27983 T27984 compound MyD88-specific,shRNA
R20371 T27984 T27982 pobj shRNA,with
R20372 T27985 T27987 punct (,bars
R20373 T27986 T27987 amod black,bars
R20374 T27987 T27984 appos bars,shRNA
R20375 T27988 T27981 punct ),transduced
R20376 T27989 T27977 prep compared,inhibited
R20377 T27990 T27989 prep with,compared
R20378 T27991 T27992 det the,cells
R20379 T27992 T27990 pobj cells,with
R20380 T27993 T27992 acl transduced,cells
R20381 T27994 T27993 prep with,transduced
R20382 T27995 T27996 compound control,shRNA
R20383 T27996 T27994 pobj shRNA,with
R20384 T27997 T27996 punct (,shRNA
R20385 T27998 T27999 amod open,bars
R20386 T27999 T27996 appos bars,shRNA
R20387 T28000 T27996 punct ),shRNA
R20388 T28001 T27993 prep in,transduced
R20389 T28002 T28001 pobj both,in
R20390 T28003 T27977 punct ",",inhibited
R20391 T28004 T28005 det the,absence
R20392 T28005 T27977 dobj absence,inhibited
R20393 T28006 T28005 cc or,absence
R20394 T28007 T28005 conj presence,absence
R20395 T28008 T28005 prep of,absence
R20396 T28009 T28010 compound MTb,infection
R20397 T28010 T28008 pobj infection,of
R20398 T28011 T27977 punct .,inhibited
R20399 T28012 T28021 nsubj TNF,are
R20400 T28013 T28012 cc and,TNF
R20401 T28014 T28015 compound CD86,mRNAs
R20402 T28015 T28012 conj mRNAs,TNF
R20403 T28016 T28015 punct ",",mRNAs
R20404 T28017 T28018 det the,expression
R20405 T28018 T28015 appos expression,mRNAs
R20406 T28019 T28018 prep of,expression
R20407 T28020 T28019 pobj which,of
R20408 T28021 T28021 ROOT are,are
R20409 T28022 T28021 acomp MyD88-dependent,are
R20410 T28023 T28021 cc and,are
R20411 T28024 T28034 punct -,measured
R20412 T28025 T28034 advcl independent,measured
R20413 T28026 T28025 punct ",",independent
R20414 T28027 T28025 advmod respectively,independent
R20415 T28028 T28034 punct ",",measured
R20416 T28029 T28034 prep during,measured
R20417 T28030 T28031 compound MTb,infection
R20418 T28031 T28029 pobj infection,during
R20419 T28032 T28034 punct ",",measured
R20420 T28033 T28034 auxpass were,measured
R20421 T28034 T28021 conj measured,are
R20422 T28035 T28034 prep as,measured
R20423 T28036 T28035 pobj controls,as
R20424 T28037 T28034 punct .,measured
R20425 T28038 T28043 punct (,IRAK1
R20426 T28039 T28043 nmod C,IRAK1
R20427 T28040 T28039 punct ",",C
R20428 T28041 T28039 appos D,C
R20429 T28042 T28043 punct ),IRAK1
R20430 T28043 T28047 nsubjpass IRAK1,required
R20431 T28044 T28043 cc and,IRAK1
R20432 T28045 T28043 conj TRAF6,IRAK1
R20433 T28046 T28047 auxpass are,required
R20434 T28047 T28047 ROOT required,required
R20435 T28048 T28047 prep for,required
R20436 T28049 T28050 compound MTb,induction
R20437 T28050 T28048 pobj induction,for
R20438 T28051 T28050 prep of,induction
R20439 T28052 T28054 nummod NFAT5,expression
R20440 T28053 T28054 compound gene,expression
R20441 T28054 T28051 pobj expression,of
R20442 T28055 T28050 prep in,induction
R20443 T28056 T28057 amod human,monocytes
R20444 T28057 T28055 pobj monocytes,in
R20445 T28058 T28047 punct .,required
R20446 T28059 T28060 nummod THP-1,cells
R20447 T28060 T28071 nsubjpass cells,constructed
R20448 T28061 T28063 nsubj that,express
R20449 T28062 T28063 advmod constitutively,express
R20450 T28063 T28060 relcl express,cells
R20451 T28064 T28065 compound lentivirally-delivered,IRAK1
R20452 T28065 T28063 dobj IRAK1,express
R20453 T28066 T28065 punct -,IRAK1
R20454 T28067 T28065 cc or,IRAK1
R20455 T28068 T28069 amod TRAF6-specific,shRNA
R20456 T28069 T28071 nsubjpass shRNA,constructed
R20457 T28070 T28071 auxpass were,constructed
R20458 T28071 T28071 ROOT constructed,constructed
R20459 T28072 T28073 mark as,described
R20460 T28073 T28071 advcl described,constructed
R20461 T28074 T28073 prep in,described
R20462 T28075 T28074 pobj Materials,in
R20463 T28076 T28075 cc and,Materials
R20464 T28077 T28075 conj Methods,Materials
R20465 T28078 T28071 punct .,constructed
R20466 T28079 T28080 nummod THP-1,cells
R20467 T28080 T28085 nsubjpass cells,used
R20468 T28081 T28080 acl expressing,cells
R20469 T28082 T28083 compound control,shRNA
R20470 T28083 T28081 dobj shRNA,expressing
R20471 T28084 T28085 auxpass were,used
R20472 T28085 T28085 ROOT used,used
R20473 T28086 T28087 mark as,described
R20474 T28087 T28085 advcl described,used
R20475 T28088 T28087 prep in,described
R20476 T28089 T28088 pobj 7B,in
R20477 T28090 T28085 punct .,used
R20478 T28091 T28093 nsubjpass Cells,infected
R20479 T28092 T28093 auxpass were,infected
R20480 T28093 T28093 ROOT infected,infected
R20481 T28094 T28093 prep with,infected
R20482 T28095 T28096 compound MTb,strain
R20483 T28096 T28094 pobj strain,with
R20484 T28097 T28096 nummod CDC1551,strain
R20485 T28098 T28093 cc or,infected
R20486 T28099 T28093 conj left,infected
R20487 T28100 T28099 oprd uninfected,left
R20488 T28101 T28099 prep for,left
R20489 T28102 T28103 nummod 16,hours
R20490 T28103 T28101 pobj hours,for
R20491 T28104 T28099 prep at,left
R20492 T28105 T28106 nummod 37,°
R20493 T28106 T28107 nummod °,C
R20494 T28107 T28104 pobj C,at
R20495 T28108 T28099 punct ",",left
R20496 T28109 T28099 cc and,left
R20497 T28110 T28112 nsubjpass RNA,analyzed
R20498 T28111 T28112 auxpass was,analyzed
R20499 T28112 T28099 conj analyzed,left
R20500 T28113 T28112 punct .,analyzed
R20501 T28114 T28115 nummod NFAT5,expression
R20502 T28115 T28118 nsubjpass expression,inhibited
R20503 T28116 T28118 auxpass was,inhibited
R20504 T28117 T28118 advmod significantly,inhibited
R20505 T28118 T28118 ROOT inhibited,inhibited
R20506 T28119 T28118 prep in,inhibited
R20507 T28120 T28122 det the,cells
R20508 T28121 T28122 amod MTb-infected,cells
R20548 T28161 T28159 conj TRAF6,IRAK1
R20549 T28162 T28164 aux to,induced
R20550 T28163 T28164 auxpass be,induced
R20551 T28164 T28158 xcomp induced,require
R20552 T28165 T28164 agent by,induced
R20553 T28166 T28167 compound PRR,activation
R20554 T28167 T28165 pobj activation,by
R20555 T28168 T28170 punct ",",measured
R20556 T28169 T28170 auxpass were,measured
R20557 T28170 T28158 conj measured,require
R20558 T28171 T28170 prep as,measured
R20559 T28172 T28171 pobj controls,as
R20560 T28173 T28158 punct .,require
R20561 T28174 T28177 punct (,p
R20562 T28175 T28177 punct *,p
R20563 T28176 T28177 punct ",",p
R20564 T28177 T28177 ROOT p,p
R20565 T28178 T28177 advmod <,p
R20566 T28179 T28177 npadvmod 0.05,p
R20567 T28180 T28186 punct ;,)
R20568 T28181 T28186 punct **,)
R20569 T28182 T28186 punct ",",)
R20570 T28183 T28186 nmod p,)
R20571 T28184 T28185 compound <,0.01
R20572 T28185 T28183 npadvmod 0.01,p
R20573 T28186 T28177 punct ),p
R20574 T28187 T28177 punct .,p
R20232 T27845 T27842 pobj CDC1551,with
R20233 T27846 T27847 punct (,1
R20234 T27847 T27850 nummod 1,cells
R20235 T27848 T27850 nummod ∶,cells
R20236 T27849 T27850 nummod 1,cells
R20237 T27850 T27856 nsubj cells,left
R20238 T27851 T27852 compound ∶,bacilli
R20239 T27852 T27850 appos bacilli,cells
R20240 T27853 T27850 punct ),cells
R20241 T27854 T27850 punct ",",cells
R20242 T27855 T27850 cc or,cells
R20243 T27856 T27828 conj left,incubated
R20244 T27857 T27856 oprd untreated,left
R20245 T27858 T27856 punct .,left
R20246 T27859 T27867 prep After,measured
R20247 T27860 T27861 nummod 16,hours
R20248 T27861 T27859 pobj hours,After
R20249 T27862 T27867 punct ",",measured
R20250 T27863 T27864 compound NFAT5,mRNA
R20251 T27864 T27865 compound mRNA,levels
R20252 T27865 T27867 nsubjpass levels,measured
R20253 T27866 T27867 auxpass were,measured
R20254 T27867 T27867 ROOT measured,measured
R20255 T27868 T27867 punct .,measured
R20256 T27869 T27871 nummod NFAT5,expression
R20257 T27870 T27871 compound mRNA,expression
R20258 T27871 T27874 nsubjpass expression,increased
R20259 T27872 T27874 auxpass was,increased
R20260 T27873 T27874 advmod significantly,increased
R20261 T27874 T27874 ROOT increased,increased
R20509 T28122 T28119 pobj cells,in
R20510 T28123 T28122 acl expressing,cells
R20511 T28124 T28139 preconj either,compared
R20512 T28125 T28139 nsubj IRAK1,compared
R20513 T28126 T28125 punct (,IRAK1
R20514 T28127 T28125 appos C,IRAK1
R20515 T28128 T28125 punct ),IRAK1
R20516 T28129 T28125 cc or,IRAK1
R20517 T28130 T28125 conj TRAF6,IRAK1
R20518 T28131 T28134 punct (,shRNA
R20519 T28132 T28134 nmod D,shRNA
R20520 T28133 T28134 punct ),shRNA
R20521 T28134 T28134 ROOT shRNA,shRNA
R20522 T28135 T28137 punct (,bars
R20523 T28136 T28137 amod black,bars
R20524 T28137 T28134 appos bars,shRNA
R20525 T28138 T28134 punct ),shRNA
R20526 T28139 T28118 conj compared,inhibited
R20527 T28140 T28139 prep to,compared
R20528 T28141 T28140 pobj cells,to
R20529 T28142 T28141 acl expressing,cells
R20530 T28143 T28144 compound control,shRNA
R20531 T28144 T28142 dobj shRNA,expressing
R20532 T28145 T28144 punct (,shRNA
R20533 T28146 T28147 amod open,bars
R20534 T28147 T28144 appos bars,shRNA
R20535 T28148 T28144 punct ),shRNA
R20536 T28149 T28118 punct .,inhibited
R20537 T28150 T28158 nsubj TNF,require
R20538 T28151 T28150 cc and,TNF
R20539 T28152 T28153 compound CD86,mRNAs
R20540 T28153 T28150 conj mRNAs,TNF
R20541 T28154 T28153 punct ",",mRNAs
R20542 T28155 T28158 nsubj both,require
R20543 T28156 T28155 prep of,both
R20544 T28157 T28156 pobj which,of
R20545 T28158 T28158 ROOT require,require
R20546 T28159 T28158 dobj IRAK1,require
R20547 T28160 T28159 cc and,IRAK1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T27737 1972-1979 Positive_regulation denotes require
T27736 1972-1979 Positive_regulation denotes require
T27735 2013-2016 Protein denotes PRR
T27734 1990-1995 Protein denotes TRAF6
T27733 1980-1985 Protein denotes IRAK1
T27732 1946-1956 Protein denotes CD86 mRNAs
T27731 1938-1941 Protein denotes TNF
T27730 1822-1832 Gene_expression denotes expressing
T27729 1822-1832 Gene_expression denotes expressing
T27728 1786-1795 Negative_regulation denotes inhibited
T27727 1757-1767 Gene_expression denotes expression
T27726 1853-1858 Protein denotes TRAF6
T27725 1840-1845 Protein denotes IRAK1
T27724 1751-1756 Protein denotes NFAT5
T27723 1459-1466 Gene_expression denotes express
T27722 1500-1505 Protein denotes TRAF6
T27721 1490-1495 Protein denotes IRAK1
T27720 1355-1363 Positive_regulation denotes required
T27719 1355-1363 Positive_regulation denotes required
T27718 1372-1381 Positive_regulation denotes induction
T27717 1396-1406 Gene_expression denotes expression
T27716 1385-1395 Protein denotes NFAT5 gene
T27715 1345-1350 Protein denotes TRAF6
T27714 1335-1340 Protein denotes IRAK1
T27713 1237-1246 Positive_regulation denotes dependent
T27712 1237-1246 Positive_regulation denotes dependent
T27711 1207-1217 Gene_expression denotes expression
T27710 1207-1217 Gene_expression denotes expression
T27709 1231-1236 Protein denotes MyD88
T27708 1191-1201 Protein denotes CD86 mRNAs
T27707 1183-1186 Protein denotes TNF
T27706 993-1002 Negative_regulation denotes inhibited
T27705 1032-1037 Protein denotes MyD88
T27704 956-966 Protein denotes NFAT5 mRNA
T27703 689-696 Gene_expression denotes express
T27702 689-696 Gene_expression denotes express
T27701 769-772 Protein denotes GFP
T27700 736-741 Protein denotes MyD88
T27699 602-611 Positive_regulation denotes induction
T27698 626-636 Gene_expression denotes expression
T27697 615-625 Protein denotes NFAT5 gene
T27696 575-580 Protein denotes MyD88
T27695 471-480 Positive_regulation denotes increased
T27694 442-452 Gene_expression denotes expression
T27693 431-441 Protein denotes NFAT5 mRNA
T27692 398-408 Protein denotes NFAT5 mRNA
T27691 189-197 Positive_regulation denotes enhances
T27690 209-218 Gene_expression denotes synthesis
T27689 198-208 Protein denotes NFAT5 mRNA
T27688 102-111 Positive_regulation denotes induction
T27687 121-131 Gene_expression denotes expression
T27686 115-120 Protein denotes NFAT5
T27685 48-53 Protein denotes MyD88
T27739 2002-2009 Positive_regulation denotes induced
T27738 2017-2027 Positive_regulation denotes activation
R20118 T27686 T27687 themeOf NFAT5,expression
R20119 T27687 T27688 themeOf expression,induction
R20120 T27689 T27690 themeOf NFAT5 mRNA,synthesis
R20121 T27690 T27691 themeOf synthesis,enhances
R20122 T27693 T27694 themeOf NFAT5 mRNA,expression
R20123 T27694 T27695 themeOf expression,increased
R20124 T27697 T27698 themeOf NFAT5 gene,expression
R20125 T27698 T27699 themeOf expression,induction
R20126 T27700 T27702 themeOf MyD88,express
R20127 T27701 T27703 themeOf GFP,express
R20128 T27704 T27706 themeOf NFAT5 mRNA,inhibited
R20129 T27707 T27710 themeOf TNF,expression
R20130 T27708 T27711 themeOf CD86 mRNAs,expression
R20131 T27709 T27712 causeOf MyD88,dependent
R20132 T27709 T27713 causeOf MyD88,dependent
R20133 T27710 T27712 themeOf expression,dependent
R20134 T27711 T27713 themeOf expression,dependent
R20135 T27714 T27719 causeOf IRAK1,required
R20136 T27715 T27720 causeOf TRAF6,required
R20137 T27716 T27717 themeOf NFAT5 gene,expression
R20138 T27717 T27718 themeOf expression,induction
R20139 T27718 T27719 themeOf induction,required
R20140 T27718 T27720 themeOf induction,required
R20141 T27721 T27723 themeOf IRAK1,express
R20142 T27724 T27727 themeOf NFAT5,expression
R20143 T27725 T27729 themeOf IRAK1,expressing
R20144 T27726 T27730 themeOf TRAF6,expressing
R20145 T27727 T27728 themeOf expression,inhibited
R20146 T27733 T27736 themeOf IRAK1,require
R20147 T27734 T27737 themeOf TRAF6,require
R20148 T27735 T27738 themeOf PRR,activation
R20149 T27738 T27739 themeOf activation,induced

testone

Id Subject Object Predicate Lexical cue
T26880 2002-2009 Positive_regulation denotes induced
T26879 1951-1956 Transcription denotes mRNAs
T26878 1822-1832 Gene_expression denotes expressing
T26877 1786-1795 Negative_regulation denotes inhibited
T26876 1757-1767 Gene_expression denotes expression
T26875 1459-1466 Gene_expression denotes express
T26874 1396-1406 Gene_expression denotes expression
T26873 1372-1381 Positive_regulation denotes induction
T26872 626-636 Gene_expression denotes expression
T26871 602-611 Positive_regulation denotes induction
T26870 437-452 Transcription denotes mRNA expression
T26869 189-197 Positive_regulation denotes enhances
T26868 156-166 Binding denotes Engagement
T26867 121-131 Gene_expression denotes expression
T26866 102-111 Positive_regulation denotes induction
T26865 1990-1995 Protein denotes TRAF6
T26864 1980-1985 Protein denotes IRAK1
T26863 1946-1950 Protein denotes CD86
T26862 1938-1941 Protein denotes TNF
T26861 1919-1924 Protein denotes shRNA
T26860 1853-1858 Protein denotes TRAF6
T26859 1840-1845 Protein denotes IRAK1
T26858 1751-1756 Protein denotes NFAT5
T26857 1608-1613 Protein denotes shRNA
T26856 1500-1505 Protein denotes TRAF6
T26855 1490-1495 Protein denotes IRAK1
T26854 1385-1390 Protein denotes NFAT5
T26853 1345-1350 Protein denotes TRAF6
T26852 1335-1340 Protein denotes IRAK1
T26851 1231-1236 Protein denotes MyD88
T26850 1191-1195 Protein denotes CD86
T26849 1183-1186 Protein denotes TNF
T26848 1032-1037 Protein denotes MyD88
T26847 956-961 Protein denotes NFAT5
T26846 769-772 Protein denotes GFP
T26845 736-741 Protein denotes MyD88
T26844 615-620 Protein denotes NFAT5
T26843 575-580 Protein denotes MyD88
T26842 431-436 Protein denotes NFAT5
T26841 398-403 Protein denotes NFAT5
T26840 269-273 Protein denotes TLR2
T26839 198-203 Protein denotes NFAT5
T26838 170-174 Protein denotes TLR2
T26837 115-120 Protein denotes NFAT5
T26836 48-53 Protein denotes MyD88
R19571 T26868 T26869 causeOf Engagement,enhances
R19572 T26872 T26871 themeOf expression,induction
R19573 T26874 T26873 themeOf expression,induction
R19574 T26876 T26877 themeOf expression,inhibited
R19575 T26878 T26877 themeOf expressing,inhibited
R19553 T26837 T26867 themeOf NFAT5,expression
R19554 T26838 T26868 themeOf TLR2,Engagement
R19555 T26842 T26870 themeOf NFAT5,mRNA expression
R19556 T26843 T26871 causeOf MyD88,induction
R19557 T26844 T26872 themeOf NFAT5,expression
R19558 T26852 T26873 causeOf IRAK1,induction
R19559 T26854 T26874 themeOf NFAT5,expression
R19560 T26855 T26875 themeOf IRAK1,express
R19561 T26856 T26875 themeOf TRAF6,express
R19562 T26858 T26876 themeOf NFAT5,expression
R19563 T26859 T26878 themeOf IRAK1,expressing
R19564 T26860 T26878 themeOf TRAF6,expressing
R19565 T26861 T26878 themeOf shRNA,expressing
R19566 T26862 T26879 themeOf TNF,mRNAs
R19567 T26863 T26879 themeOf CD86,mRNAs
R19568 T26864 T26880 themeOf IRAK1,induced
R19569 T26865 T26880 themeOf TRAF6,induced
R19570 T26867 T26866 themeOf expression,induction
R19576 T26879 T26880 themeOf mRNAs,induced

test3

Id Subject Object Predicate Lexical cue
T26958 2002-2009 Positive_regulation denotes induced
T26957 1990-1995 Protein denotes TRAF6
T26956 1980-1985 Protein denotes IRAK1
T26955 1946-1950 Protein denotes CD86
T26954 1938-1941 Protein denotes TNF
T26953 1919-1924 Protein denotes shRNA
T26952 1853-1858 Protein denotes TRAF6
T26951 1840-1845 Protein denotes IRAK1
T26950 1822-1832 Gene_expression denotes expressing
T26949 1786-1795 Negative_regulation denotes inhibited
T26948 1757-1767 Gene_expression denotes expression
T26947 1751-1756 Protein denotes NFAT5
T26946 1608-1613 Protein denotes shRNA
T26945 1500-1505 Protein denotes TRAF6
T26944 1490-1495 Protein denotes IRAK1
T26943 1459-1466 Gene_expression denotes express
T26942 1396-1406 Gene_expression denotes expression
T26941 1385-1390 Protein denotes NFAT5
T26940 1372-1381 Positive_regulation denotes induction
T26939 1355-1363 Positive_regulation denotes required
T26938 1345-1350 Protein denotes TRAF6
T26937 1335-1340 Protein denotes IRAK1
T26936 1237-1246 Regulation denotes dependent
T26935 1231-1236 Protein denotes MyD88
T26934 1191-1195 Protein denotes CD86
T26933 1183-1186 Protein denotes TNF
T26932 1032-1037 Protein denotes MyD88
T26931 956-961 Protein denotes NFAT5
T26930 769-772 Protein denotes GFP
T26929 736-741 Protein denotes MyD88
T26928 626-636 Gene_expression denotes expression
T26927 615-620 Protein denotes NFAT5
T26926 602-611 Positive_regulation denotes induction
T26925 575-580 Protein denotes MyD88
T26924 471-480 Positive_regulation denotes increased
T26923 437-452 Transcription denotes mRNA expression
T26922 431-436 Protein denotes NFAT5
T26921 398-403 Protein denotes NFAT5
T26920 269-273 Protein denotes TLR2
T26919 209-218 Transcription denotes synthesis
T26918 204-208 Transcription denotes mRNA
T26917 198-203 Protein denotes NFAT5
T26916 170-174 Protein denotes TLR2
T26915 156-166 Binding denotes Engagement
T26914 121-131 Gene_expression denotes expression
T26913 115-120 Protein denotes NFAT5
T26912 102-111 Positive_regulation denotes induction
T26911 48-53 Protein denotes MyD88
T26910 1990-1995 Protein denotes TRAF6
T26909 1980-1985 Protein denotes IRAK1
T26908 1946-1950 Protein denotes CD86
T26907 1938-1941 Protein denotes TNF
T26906 1919-1924 Protein denotes shRNA
T26905 1853-1858 Protein denotes TRAF6
T26904 1840-1845 Protein denotes IRAK1
T26903 1751-1756 Protein denotes NFAT5
T26902 1608-1613 Protein denotes shRNA
T26901 1500-1505 Protein denotes TRAF6
T26900 1490-1495 Protein denotes IRAK1
T26899 1385-1390 Protein denotes NFAT5
T26898 1345-1350 Protein denotes TRAF6
T26897 1335-1340 Protein denotes IRAK1
T26896 1231-1236 Protein denotes MyD88
T26895 1191-1195 Protein denotes CD86
T26894 1183-1186 Protein denotes TNF
T26893 1032-1037 Protein denotes MyD88
T26892 956-961 Protein denotes NFAT5
T26891 769-772 Protein denotes GFP
T26890 736-741 Protein denotes MyD88
T26889 615-620 Protein denotes NFAT5
T26888 575-580 Protein denotes MyD88
T26887 431-436 Protein denotes NFAT5
T26886 398-403 Protein denotes NFAT5
T26885 269-273 Protein denotes TLR2
T26884 198-203 Protein denotes NFAT5
T26883 170-174 Protein denotes TLR2
T26882 115-120 Protein denotes NFAT5
T26881 48-53 Protein denotes MyD88
R19578 T26914 T26912 themeOf expression,induction
R19579 T26916 T26915 themeOf TLR2,Engagement
R19580 T26922 T26923 themeOf NFAT5,mRNA expression
R19581 T26923 T26924 themeOf mRNA expression,increased
R19582 T26925 T26926 causeOf MyD88,induction
R19583 T26927 T26928 themeOf NFAT5,expression
R19584 T26928 T26926 themeOf expression,induction
R19585 T26937 T26939 causeOf IRAK1,required
R19586 T26938 T26939 causeOf TRAF6,required
R19587 T26940 T26939 themeOf induction,required
R19588 T26941 T26942 themeOf NFAT5,expression
R19589 T26942 T26940 themeOf expression,induction
R19590 T26944 T26943 themeOf IRAK1,express
R19591 T26945 T26943 themeOf TRAF6,express
R19592 T26947 T26948 themeOf NFAT5,expression
R19593 T26948 T26949 themeOf expression,inhibited
R19594 T26950 T26949 causeOf expressing,inhibited
R19595 T26951 T26950 themeOf IRAK1,expressing
R19596 T26951 T26949 causeOf IRAK1,inhibited
R19597 T26952 T26950 themeOf TRAF6,expressing
R19598 T26952 T26949 causeOf TRAF6,inhibited
R19599 T26953 T26950 themeOf shRNA,expressing
R19600 T26953 T26949 causeOf shRNA,inhibited
R19601 T26956 T26958 themeOf IRAK1,induced
R19602 T26957 T26958 themeOf TRAF6,induced
R19577 T26913 T26914 themeOf NFAT5,expression