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PMC:3320587 / 415-668 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T268 241-252 NN denotes macrophages
T267 229-240 JJ denotes co-infected
T266 226-228 IN denotes in
T265 214-225 NN denotes replication
T264 208-213 NN denotes HIV-1
T263 196-207 JJ denotes -stimulated
T262 195-196 -RRB- denotes )
T261 192-195 NN denotes MTb
T260 191-192 -LRB- denotes (
T259 178-190 NN denotes tuberculosis
T258 164-177 NN denotes Mycobacterium
T257 155-163 VB denotes inhibits
T256 153-154 -RRB- denotes )
T255 149-153 NN denotes RNAi
T254 148-149 -LRB- denotes (
T253 135-147 NN denotes interference
T252 131-134 NN denotes RNA
T251 128-130 IN denotes by
T250 126-127 -RRB- denotes )
T249 121-126 NN denotes NFAT5
T248 120-121 -LRB- denotes (
T247 118-119 CD denotes 5
T246 112-117 NN denotes cells
T245 110-111 NN denotes T
T244 100-109 VB denotes activated
T243 97-99 IN denotes of
T242 90-96 NN denotes factor
T241 82-89 JJ denotes nuclear
T240 75-81 NN denotes factor
T239 61-74 NN denotes transcription
T238 57-60 DT denotes the
T237 54-56 IN denotes of
T236 43-53 NN denotes expression
T235 39-42 DT denotes the
T234 36-38 IN denotes of
T233 26-35 NN denotes silencing
T232 21-25 IN denotes that
T231 9-20 VB denotes demonstrate
T230 6-8 PRP denotes we
T229 4-5 -COMMA- denotes ,
T228 0-4 RB denotes Here
R58 T230 T231 arg1Of we,demonstrate
R59 T231 T228 arg1Of demonstrate,Here
R60 T231 T229 arg1Of demonstrate,","
R61 T233 T234 arg1Of silencing,of
R62 T233 T257 arg1Of silencing,inhibits
R63 T236 T234 arg2Of expression,of
R64 T236 T235 arg1Of expression,the
R65 T236 T237 arg1Of expression,of
R66 T242 T237 arg2Of factor,of
R67 T242 T238 arg1Of factor,the
R68 T242 T239 arg1Of factor,transcription
R69 T242 T240 arg1Of factor,factor
R70 T242 T241 arg1Of factor,nuclear
R71 T242 T243 arg1Of factor,of
R72 T242 T251 arg1Of factor,by
R73 T247 T243 arg2Of 5,of
R74 T247 T244 arg2Of 5,activated
R75 T247 T245 arg1Of 5,T
R76 T247 T246 arg1Of 5,cells
R77 T247 T248 arg1Of 5,(
R78 T249 T248 arg2Of NFAT5,(
R79 T250 T248 arg3Of ),(
R80 T253 T251 arg2Of interference,by
R81 T253 T252 arg1Of interference,RNA
R82 T253 T254 arg1Of interference,(
R83 T255 T254 arg2Of RNAi,(
R84 T256 T254 arg3Of ),(
R85 T257 T231 arg2Of inhibits,demonstrate
R86 T257 T232 arg1Of inhibits,that
R87 T261 T260 arg2Of MTb,(
R88 T262 T260 arg3Of ),(
R89 T265 T257 arg2Of replication,inhibits
R90 T265 T258 arg1Of replication,Mycobacterium
R91 T265 T259 arg1Of replication,tuberculosis
R92 T265 T260 arg1Of replication,(
R93 T265 T263 arg1Of replication,-stimulated
R94 T265 T264 arg1Of replication,HIV-1
R95 T265 T266 arg1Of replication,in
R96 T268 T266 arg2Of macrophages,in
R97 T268 T267 arg1Of macrophages,co-infected

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T86 82-119 Protein denotes nuclear factor of activated T cells 5
T87 121-126 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T412 121-126 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T104 149-153 http://purl.obolibrary.org/obo/GO_0016246 denotes RNAi
T103 131-147 http://purl.obolibrary.org/obo/GO_0016246 denotes RNA interference
T99 61-74 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T119 112-117 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T59 0-253 Sentence denotes Here, we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits Mycobacterium tuberculosis (MTb)-stimulated HIV-1 replication in co-infected macrophages.
T5 0-253 Sentence denotes Here, we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits Mycobacterium tuberculosis (MTb)-stimulated HIV-1 replication in co-infected macrophages.

ICD10

Id Subject Object Predicate Lexical cue
T116 178-190 http://purl.bioontology.org/ontology/ICD10/A15-A19.9 denotes tuberculosis

simple1

Id Subject Object Predicate Lexical cue
T169 82-119 Protein denotes nuclear factor of activated T cells 5
T170 121-126 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T756 82-119 Protein denotes nuclear factor of activated T cells 5
T757 121-126 Protein denotes NFAT5
T767 26-35 Negative_regulation denotes silencing
T768 43-53 Gene_expression denotes expression
R582 T757 T768 themeOf NFAT5,expression
R591 T768 T767 themeOf expression,silencing

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T442 82-119 Protein denotes nuclear factor of activated T cells 5
T443 121-126 Protein denotes NFAT5
T452 43-53 Gene_expression denotes expression
T453 26-35 Negative_regulation denotes silencing
R508 T443 T452 themeOf NFAT5,expression
R517 T452 T453 themeOf expression,silencing

DLUT931

Id Subject Object Predicate Lexical cue
T422 82-119 Protein denotes nuclear factor of activated T cells 5
T423 121-126 Protein denotes NFAT5
T432 43-53 Gene_expression denotes expression
R500 T422 T432 themeOf nuclear factor of activated T cells 5,expression
R501 T423 T432 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T821 54-163 Negative_regulation denotes of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T813 6-163 Negative_regulation denotes we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T812 36-163 Gene_expression denotes of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T786 229-252 Entity denotes co-infected macrophages
T795 54-163 Protein denotes of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T797 82-127 Protein denotes nuclear factor of activated T cells 5 (NFAT5)
T803 121-126 Protein denotes NFAT5
T804 192-195 Protein denotes MTb
R603 T795 T812 themeOf of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R604 T795 T821 themeOf of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R605 T797 T821 causeOf nuclear factor of activated T cells 5 (NFAT5),of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R455 T812 T813 themeOf of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T607 252-253 . denotes .
T606 241-252 NNS denotes macrophages
T605 229-240 JJ denotes co-infected
T604 226-228 IN denotes in
T603 214-225 NN denotes replication
T602 208-213 NNP denotes HIV-1
T601 197-207 VBN denotes stimulated
T600 196-197 : denotes -
T599 195-196 -RRB- denotes )
T598 192-195 NNP denotes MTb
T597 191-192 -LRB- denotes (
T596 178-190 NN denotes tuberculosis
T595 164-177 NNP denotes Mycobacterium
T594 155-163 VBZ denotes inhibits
T593 153-154 -RRB- denotes )
T592 149-153 NNS denotes RNAi
T591 148-149 -LRB- denotes (
T590 135-147 NN denotes interference
T589 131-134 NNP denotes RNA
T588 128-130 IN denotes by
T568 9-20 VBP denotes demonstrate
T567 6-8 PRP denotes we
T566 4-5 , denotes ,
T565 0-4 RB denotes Here
T569 21-25 IN denotes that
T570 26-35 VBG denotes silencing
T571 36-38 IN denotes of
T572 39-42 DT denotes the
T573 43-53 NN denotes expression
T574 54-56 IN denotes of
T575 57-60 DT denotes the
T576 61-74 NN denotes transcription
T577 75-81 NN denotes factor
T578 82-89 JJ denotes nuclear
T579 90-96 NN denotes factor
T580 97-99 IN denotes of
T581 100-109 VBN denotes activated
T582 110-111 NNP denotes T
T583 112-117 NNS denotes cells
T584 118-119 CD denotes 5
T585 120-121 -LRB- denotes (
T586 121-126 CD denotes NFAT5
T587 126-127 -RRB- denotes )
R318 T565 T568 advmod Here,demonstrate
R319 T566 T568 punct ",",demonstrate
R320 T567 T568 nsubj we,demonstrate
R321 T568 T568 ROOT demonstrate,demonstrate
R322 T588 T570 prep by,silencing
R323 T589 T590 compound RNA,interference
R324 T590 T588 pobj interference,by
R325 T591 T592 punct (,RNAi
R326 T592 T570 appos RNAi,silencing
R327 T593 T570 punct ),silencing
R328 T594 T568 ccomp inhibits,demonstrate
R329 T595 T596 compound Mycobacterium,tuberculosis
R330 T596 T594 dobj tuberculosis,inhibits
R331 T597 T596 punct (,tuberculosis
R332 T598 T596 appos MTb,tuberculosis
R333 T599 T596 punct ),tuberculosis
R334 T600 T596 punct -,tuberculosis
R335 T601 T568 advcl stimulated,demonstrate
R336 T602 T603 compound HIV-1,replication
R337 T603 T601 dobj replication,stimulated
R338 T604 T603 prep in,replication
R339 T605 T606 amod co-infected,macrophages
R340 T606 T604 pobj macrophages,in
R341 T607 T568 punct .,demonstrate
R527 T569 T594 mark that,inhibits
R528 T570 T594 csubj silencing,inhibits
R529 T571 T570 prep of,silencing
R530 T572 T573 det the,expression
R531 T573 T571 pobj expression,of
R532 T574 T573 prep of,expression
R533 T575 T577 det the,factor
R534 T576 T577 compound transcription,factor
R535 T577 T574 pobj factor,of
R536 T578 T579 amod nuclear,factor
R537 T579 T573 conj factor,expression
R538 T580 T573 prep of,expression
R539 T581 T583 amod activated,cells
R540 T582 T583 compound T,cells
R541 T583 T580 pobj cells,of
R542 T584 T570 nummod 5,silencing
R543 T585 T586 punct (,NFAT5
R544 T586 T584 prep NFAT5,5
R545 T587 T584 punct ),5

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T130 26-35 Negative_regulation denotes silencing
T129 26-35 Negative_regulation denotes silencing
T128 26-35 Negative_regulation denotes silencing
T127 43-53 Gene_expression denotes expression
T122 61-96 Protein denotes transcription factor nuclear factor
T123 100-119 Protein denotes activated T cells 5
T124 121-126 Protein denotes NFAT5
T125 43-53 Gene_expression denotes expression
T126 43-53 Gene_expression denotes expression
R19 T127 T130 themeOf expression,silencing
R466 T122 T125 themeOf transcription factor nuclear factor,expression
R467 T123 T126 themeOf activated T cells 5,expression
R468 T124 T127 themeOf NFAT5,expression
R469 T125 T128 themeOf expression,silencing
R470 T126 T129 themeOf expression,silencing

testone

Id Subject Object Predicate Lexical cue
T23 26-35 Negative_regulation denotes silencing
T14 121-126 Protein denotes NFAT5
T13 82-119 Protein denotes nuclear factor of activated T cells 5
R1 T14 T13 equivalentTo NFAT5,nuclear factor of activated T cells 5

test3

Id Subject Object Predicate Lexical cue
T45 121-126 Protein denotes NFAT5
T44 82-119 Protein denotes nuclear factor of activated T cells 5
T34 121-126 Protein denotes NFAT5
T33 82-119 Protein denotes nuclear factor of activated T cells 5
R11 T45 T44 equivalentTo NFAT5,nuclear factor of activated T cells 5