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PMC:3320587 / 41353-41568 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15187 213-214 -RRB- denotes )
T15186 211-213 NN denotes 7A
T15185 204-210 NN denotes Figure
T15184 203-204 -LRB- denotes (
T15183 197-202 NN denotes cells
T15182 189-196 NN denotes control
T15181 173-188 JJ denotes mock-stimulated
T15180 170-172 TO denotes to
T15179 161-169 VB denotes compared
T15178 158-160 IN denotes as
T15177 152-157 NN denotes cells
T15176 133-151 JJ denotes Pam3Cys-stimulated
T15175 130-132 IN denotes in
T15174 120-129 VB denotes increased
T15173 106-119 RB denotes significantly
T15172 101-105 VB denotes were
T15171 94-100 NN denotes levels
T15170 89-93 NN denotes mRNA
T15169 83-88 NN denotes NFAT5
T15168 81-82 -COMMA- denotes ,
T15167 76-81 NN denotes hours
T15166 73-75 CD denotes 16
T15165 69-72 IN denotes for
T15164 61-68 NN denotes Pam3Cys
T15163 53-60 NN denotes agonist
T15162 39-52 JJ denotes TLR2-specific
T15161 35-38 DT denotes the
T15160 30-34 IN denotes with
T15159 22-29 VB denotes treated
T15158 17-21 VB denotes were
T15157 11-16 NN denotes cells
T15156 5-10 NN denotes THP-1
T15155 0-4 WRB denotes When
R11046 T15157 T15156 arg1Of cells,THP-1
R11047 T15157 T15158 arg1Of cells,were
R11048 T15157 T15159 arg2Of cells,treated
R11049 T15159 T15155 arg2Of treated,When
R11050 T15159 T15158 arg2Of treated,were
R11051 T15159 T15160 arg1Of treated,with
R11052 T15164 T15160 arg2Of Pam3Cys,with
R11053 T15164 T15161 arg1Of Pam3Cys,the
R11054 T15164 T15162 arg1Of Pam3Cys,TLR2-specific
R11055 T15164 T15163 arg1Of Pam3Cys,agonist
R11056 T15164 T15165 arg1Of Pam3Cys,for
R11057 T15167 T15165 arg2Of hours,for
R11058 T15167 T15166 arg1Of hours,16
R11059 T15171 T15169 arg1Of levels,NFAT5
R11060 T15171 T15170 arg1Of levels,mRNA
R11061 T15171 T15172 arg1Of levels,were
R11062 T15171 T15174 arg2Of levels,increased
R11063 T15174 T15155 arg1Of increased,When
R11064 T15174 T15168 arg1Of increased,","
R11065 T15174 T15172 arg2Of increased,were
R11066 T15174 T15173 arg1Of increased,significantly
R11067 T15174 T15175 arg1Of increased,in
R11068 T15174 T15178 arg1Of increased,as
R11069 T15177 T15175 arg2Of cells,in
R11070 T15177 T15176 arg1Of cells,Pam3Cys-stimulated
R11071 T15179 T15178 arg2Of compared,as
R11072 T15179 T15180 arg1Of compared,to
R11073 T15183 T15180 arg2Of cells,to
R11074 T15183 T15181 arg1Of cells,mock-stimulated
R11075 T15183 T15182 arg1Of cells,control
R11076 T15183 T15184 arg1Of cells,(
R11077 T15186 T15184 arg2Of 7A,(
R11078 T15186 T15185 arg1Of 7A,Figure
R11079 T15187 T15184 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14911 83-88 Protein denotes NFAT5
T14910 39-43 Protein denotes TLR2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15608 83-88 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T15633 39-43 http://www.uniprot.org/uniprot/O60603 denotes TLR2

GO-CC

Id Subject Object Predicate Lexical cue
T14977 197-202 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14976 152-157 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14975 11-16 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T14769 0-215 Sentence denotes When THP-1 cells were treated with the TLR2-specific agonist Pam3Cys for 16 hours, NFAT5 mRNA levels were significantly increased in Pam3Cys-stimulated cells as compared to mock-stimulated control cells (Figure 7A).
T242 0-215 Sentence denotes When THP-1 cells were treated with the TLR2-specific agonist Pam3Cys for 16 hours, NFAT5 mRNA levels were significantly increased in Pam3Cys-stimulated cells as compared to mock-stimulated control cells (Figure 7A).

simple1

Id Subject Object Predicate Lexical cue
T14991 83-88 Protein denotes NFAT5
T14990 39-43 Protein denotes TLR2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16747 94-100 Transcription denotes levels
T16746 120-129 Positive_regulation denotes increased
T16691 83-88 Protein denotes NFAT5
T16690 39-43 Protein denotes TLR2
R12368 T16691 T16747 themeOf NFAT5,levels
R12369 T16691 T16746 themeOf NFAT5,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15827 120-129 Positive_regulation denotes increased
T15774 83-88 Protein denotes NFAT5
T15773 39-43 Protein denotes TLR2
R11607 T15774 T15827 themeOf NFAT5,increased

DLUT931

Id Subject Object Predicate Lexical cue
T15716 120-129 Positive_regulation denotes increased
T15715 94-100 Transcription denotes levels
T15659 83-88 Protein denotes NFAT5
T15658 39-43 Protein denotes TLR2
R11505 T15659 T15715 themeOf NFAT5,levels
R11556 T15715 T15716 themeOf levels,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16900 170-196 Positive_regulation denotes to mock-stimulated control
T16883 83-88 Protein denotes NFAT5
T16859 53-60 Entity denotes agonist
T16831 133-136 Protein denotes Pam
T16811 35-52 Protein denotes the TLR2-specific
T16795 197-214 Entity denotes cells (Figure 7A)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16249 214-215 . denotes .
T16248 213-214 -RRB- denotes )
T16247 211-213 NN denotes 7A
T16246 204-210 NN denotes Figure
T16245 203-204 -LRB- denotes (
T16244 197-202 NNS denotes cells
T16243 189-196 NN denotes control
T16242 173-188 JJ denotes mock-stimulated
T16241 170-172 TO denotes to
T16240 161-169 VBN denotes compared
T16239 158-160 IN denotes as
T16238 152-157 NNS denotes cells
T16237 133-151 JJ denotes Pam3Cys-stimulated
T16236 130-132 IN denotes in
T16235 120-129 VBN denotes increased
T16234 106-119 RB denotes significantly
T16233 101-105 VBD denotes were
T16232 94-100 NNS denotes levels
T16231 89-93 NNP denotes mRNA
T16230 83-88 NNP denotes NFAT5
T16229 81-82 , denotes ,
T16228 76-81 NNS denotes hours
T16227 73-75 CD denotes 16
T16226 69-72 IN denotes for
T16225 61-68 NNS denotes Pam3Cys
T16224 53-60 NN denotes agonist
T16223 39-52 JJ denotes TLR2-specific
T16222 35-38 DT denotes the
T16221 30-34 IN denotes with
T16220 22-29 VBN denotes treated
T16219 17-21 VBD denotes were
T16218 11-16 NNS denotes cells
T16217 5-10 JJ denotes THP-1
T16216 0-4 WRB denotes When
R11895 T16216 T16220 advmod When,treated
R11896 T16217 T16218 amod THP-1,cells
R11897 T16218 T16220 nsubjpass cells,treated
R11898 T16219 T16220 auxpass were,treated
R11899 T16220 T16235 advcl treated,increased
R11900 T16221 T16220 prep with,treated
R11901 T16222 T16225 det the,Pam3Cys
R11902 T16223 T16225 amod TLR2-specific,Pam3Cys
R11903 T16224 T16225 compound agonist,Pam3Cys
R11904 T16225 T16221 pobj Pam3Cys,with
R11905 T16226 T16220 prep for,treated
R11906 T16227 T16228 nummod 16,hours
R11907 T16228 T16226 pobj hours,for
R11908 T16229 T16235 punct ",",increased
R11909 T16230 T16232 compound NFAT5,levels
R11910 T16231 T16232 compound mRNA,levels
R11911 T16232 T16235 nsubjpass levels,increased
R11912 T16233 T16235 auxpass were,increased
R11913 T16234 T16235 advmod significantly,increased
R11914 T16235 T16235 ROOT increased,increased
R11915 T16236 T16235 prep in,increased
R11916 T16237 T16238 amod Pam3Cys-stimulated,cells
R11917 T16238 T16236 pobj cells,in
R11918 T16239 T16235 prep as,increased
R11919 T16240 T16235 prep compared,increased
R11920 T16241 T16240 prep to,compared
R11921 T16242 T16244 amod mock-stimulated,cells
R11922 T16243 T16244 compound control,cells
R11923 T16244 T16241 pobj cells,to
R11924 T16245 T16247 punct (,7A
R11925 T16246 T16247 compound Figure,7A
R11926 T16247 T16244 appos 7A,cells
R11927 T16248 T16244 punct ),cells
R11928 T16249 T16235 punct .,increased

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15956 120-129 Positive_regulation denotes increased
T15955 83-93 Protein denotes NFAT5 mRNA
R11701 T15955 T15956 themeOf NFAT5 mRNA,increased

testone

Id Subject Object Predicate Lexical cue
T14548 83-88 Protein denotes NFAT5
T14547 39-43 Protein denotes TLR2

test3

Id Subject Object Predicate Lexical cue
T14694 120-129 Positive_regulation denotes increased
T14693 83-88 Protein denotes NFAT5
T14692 39-43 Protein denotes TLR2
T14637 83-88 Protein denotes NFAT5
T14636 39-43 Protein denotes TLR2
R10854 T14693 T14694 themeOf NFAT5,increased